<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:24:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455393" ref_strand="+" ref_description="SGN-E455393 [cSTS-26-M5]">
      <seq>atgggagcttacatccaccgcttgggaagcatcgtctgaagataatagagtttgtttcagtcttggtgagtgttagcagtgaagctgctgaaaaggagttgattcggcttggtgctgttaaacacatcttagaattgttttttgagtatccatacaacaactttttgcatcatcatgttgagactataataatttcgtgcctggagagtaagaatattcaatttgttgaacatcttcttagtgactgtaatcttctcgtgaaaattctggaggcggagaaaaactcaacgcttgctgctgatccatccaagccaacagcctctgttgagggaagatccccacccaggattggaaacattgggcacgtgacgcgaatagctaacaaacttgttcaactagggaacaacaataatggcatacagtcgcgtctgcagtgaatggattgattggcagacaaatattcttcaaaaacggaatgctgtggaaaatgttttccagtgggcttgtgggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctantacaatgatgaacttgatgaggctcgtggttcacttgagcaggatgatgangatgtctattttgatgatgagtctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="9746" stop="864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9446" g_stop="9406" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9405" i_stop="7170" i_length="2236">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7169" g_stop="7066" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="145" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7065" i_stop="6953" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6952" g_stop="6787" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="311" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6786" i_stop="6678" i_length="109">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6677" g_stop="6555" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="434" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6554" i_stop="4141" i_length="2414">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4140" g_stop="4066" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="509" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4065" i_stop="2271" i_length="1795">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2270" g_stop="2129" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="651" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915">
            <donor d_prob="0.877" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1213" g_stop="1184" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="681" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E455393" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9446" e_stop="9406"/>
          <exon e_start="7169" e_stop="7066"/>
          <exon e_start="6952" e_stop="6787"/>
          <exon e_start="6677" e_stop="6555"/>
          <exon e_start="4140" e_stop="4066"/>
          <exon e_start="2270" e_stop="2129"/>
          <exon e_start="1213" e_stop="1184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAGGTAGTTATCAAACATCTTCTTGTATGCAGAGATCGTAAATGCAAAGGTTGTTTATGCGGAGATTAATAATGAGGAGATCTTTATACATGAATTACTTGAACAGAATATTGTCTTTGAATAGTTTATTCCCCGTATTGCTAATACACGTATTTTCGATTCTCATTCTATCTTTAGATTCCACATGACTTTAATGTTTGTGTTAGTTAGTACTTCCAACCAAACGTTGCAGTTATGTTGTGATTATTTCTTTCTTATGAGGCTAACCAAATACTATACCATCTTTTCACCTTGAATTGGTCAAAATATGCAGACTTTCTTACTTTTCGTGGAGGATTAGAGGCGGAGTTTTATGGTTTGAGTAATTATTTCAAATCATCAAGTAAATGCTCTTCAAGCTTCTGTCTTGGAATTAGAAATGGATATAATTTAGTATCACTTTTGATCTAACTTAGAGAGGTCAGCATTGTCAAAGACGAAAAGTGCTTAACAACGTCAGGGTCTGATGAGCTTTAAGCGCAACACAATTCTTGAATACATTGTGCTGAATTTTATTTTGCAGGAAATGAAAAGTGTGTTCAAACTTTTTCTTCTTTCATTATTTGAGAGTTTTAATTGGTTTTTTTTTGTGAATAAAACACAAGTACACCCCACCCCCTTACTAAAATTGTTTTTCCTATACTTCGGCGGACTATTTTGAAGTGGAATTATTGTTCCCTCTTTTGCTGACATAGCATGGATTGATTTACTCTCTTAAAACGCATGAGAGGCATCGGGAAAACACTCTCTTGGCTTGGGAACTCAACTTTTGGTCGGCCAAGCTGTACCATTCAACTTCTACTTCACTCTATCTATCATTAAACGAGCTACATGACTCAGGTAGCTTGTCTCCAGAACCTCCACTTCCCACATCGAGCTTATCTCACTGACCTCCAATCCAACTCCTTTATCACACTAAGAGCTCCTTATTTAGCCGTAGCAAACAAACAATTAACATGTGCAGGAAACTACCCCATAACAAAATCCACTTACTTCACCTTGCAGACTTCAGTCCAAAACCACATCCTAGATCCATCTAAAGGGACCTTCTATATAGGTGCTTTCTGAAGAGATGCTTATAGCTCCAACTTAAGCTTGTTAGACTTAGTCCTAGGATTTTGCATTTGCTTTTTCAGTGAATGATCAGTTTTTTTTGCGTGTGATTTGTTGATTCGAGTGGTGAAAGTTGAGGTTTTTGTGTATAGAAAGGGAAGATGAAAGTGAAGCTAAAATAGGGAAAAAAAGGAGAAATGGGTAATGACATGGTGGCAGCACGTGTATATAAACACATTTTCTCATTTGGGTAAATAAATACTTCTTAGACCTGGAAGCATTCTAGATGTCCTAAGATGCTGGAATATGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTCCCAGCATGTATTTGGTGGTCAATCTGAATTGAGAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTAAAATGAATTGTTTAGGCCTTTATTATTTTTGGTGTGAGCAAAAACTACTAGCTCAAGCAGAAGATATTTGATGTTTTAAACTTTTGTAAGGCACAGAACTGAATCACAATATTTAAGTTGTAATACTTTTGAAGGGGTACTACATTATGGTTGTAGTATACCTGTGGATATATAGAAGTAAAGTTACCATTATAAAAAAAAAAGGGTGTGTGCTGTGAGATACAAGGAAGTGGGTAATTGAACCCCTCAAAATTCAACTGTGTAGTTCAGTAGTTGACAAATGAGGGGGCTAGTTTGGAGATCAATATTTAGCTTAAGCGTTAAAGTAGCGGCAAGTCCTCGTGTTTGTTGTACTTCGTTGAGTCCGTCAGTATTATATTTTTTGTAAATAAATTAATAAAGCTTTTCGAGCTCTCTTTAGACTTGTAAAAAAAGATTTTTGAGTATGTGAATAAGAGGACTATACTCTATCAGCCTTCCTTTATCAGAGATTTTTCATACTTCTTTGGTTTTTCCCTAGGCCCCTTTGCACTGTCCCTCCAAAAAAATGAATAATCATGTGATGCCCTCTGCTGTTCCATTCAATGAAACATTTACTTCATCAAAAAAAAAAAAAATCCTCCCGTCCACCTGCACTGTGTTTTAATGTTATGCTGGGTGGTAAATTAGACTTTGATTCCTCAAATTTTGATTTCGATCAACTGGGAATTTCAGATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGAGTAAGTGCTCTTTATAATTACTATGTTACTATATTATCAAATAACCTTCTGATTTCTGTTACTTGATAGAGTGTCTAGGTATTTGATGTCGGTTTCTTTGTTATTGAATCCAGGTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAGGTATTAATCAAAATTTAGGTGTTTTGACTCAATATTCTTAATATTACTTGTATATTGGGCTGTATATGTTGAAACCTTTGGTCACTTAAGTTTTTAAATGTGGATGCAGCCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAGGTGTTTGAAATATCTTGTTTCATGTGTTATTTGTTCATGTAGTTCTTCCAATTTGATTACGTCCTGTTTTACTGTGCTATTCAGCTACACAAGGCACAAGGATGTTTGCACTTTGAGTAGCTGATTTTGCATTTGATAAATAGAGATTTCTTAAGGTCCATTTGGCAGTTGCTAAAGTAATGTGTTCTGCATTTTCATCAAGTGGGGCAATTAGGGGAAGTAATGAGAAGCATGACACTATTGAATAGGGATAGAGGGAGTGAGAATTTTCACAGGACACAAGTGACTTCTTTATGCATATTTCATTGGTCATCGCAGAAGTTGCTCTACTCATACTACCTGGTAGTGTAATAGATGTTCAATCAACTACTCCTCAATCCCTAACTAGTTGGGATTAATTATATGAATCCTCAATATTCATTCTGCTTTATTAGAGCCCATTTCATTCCAATATTAAGTTATGTCTTTTAAAAAAGTCACTAAATCCCACATGTACATTGTTATCTAAGTCTATATGCAGACTAATGAGTCTTATGACAAATACCAAACTTAATTAAAGTGTATCAACAATTAAACTTTATTTCAGTTAGTTGGTATTGCATATATGAATCCTTTATATGAGAGATCCTGACTCTGTGTGTATGATTTTAGGTCTACCTCCTCTTTTAGCACCTTTACTCATTATAGTGTTGCACCTAGATTGCTGTACGTATGGAGGTTCACATATGACAGTGCAAACCATCTTAGACAACTTTCTCTGTTTTTATCCTCTGCATGGTATATGCACCTTGTGGTAATTTTTTTTGTCTTTTCAATCTTGTATTGCCGCACATCCATCTTAGGATTAATATTTTTATGACATCCATCTTGTGAGACCCAATATTTGATTACATATATACAACCACTCTGTGTAAATTTCTATTGCATAACACTGTCATTGTGTTCTCATATTTCAACCATCTTGTTTTAATGGATGGGTCACATCTTGATTGTCACACCTTTTCCTAGAGACTGAATGTAGATTTACATATCATTTTTTGATAACTGAGAAATCCGTTCGTGACCCGCCATTTGGACCAATCACAGCCTTTTAAACTCGGGGAATAATGGGCCTGCCCCTCTACACTTTTCCACTTAAATACCAAGCTTCGTTTTGCGTGGTGTGGTGCAGGGCGACCTAAGCCGCAAATCCTCCACCTTTTGCCACTAGAGCTAGCCTTGGGGGCAGATTTACAAATCTGTTGCATTAGACGCTACATTCTCCTGGTAGTTTACTTGTGTTGCTAGAAGAAGCTTGACTTACTAAAAGCTCTGTGTTTGGGAAGTTGATGTTGAGGTGATTCTTTTTCTTGTTTCTCTTAGATTACCTACAAAGTTGCTCTAATACCTAATCATATTTCTTAACATAGCTTCATTTTGGCAAAATTTCATGGCTGGTAGTGGACGAATGATTTTGGCTAAATTTCATTGACCTAAAGTAAGTAGGCAGTAGTGTGTTGTCTGCTGCTAGTAATTGTTGTATTGCTCGTGTATTTTTTTGTCCCTTGATTTGTGTTACTTTTTGTTGTTTCTTGTACTTCGATCAGATTGCTTTGTTATGCTTTCACTTCTATTTATTCTTTTTCTGTACTGTGTTGGAGTACTGTTTTTCCTTGAGCGGAGGGTCTATCGGAAACAACCTCTCTACCTCTACTGTAGGGTATCCTCCCCAGACCCTACTTTGTGGGACTACAGTTAGTATGTTGTTATTTAGTACCTAATGTAAGTTTTATAACTAAAATATACCTTCAGTTTCAAAAAAACAAACAAACTAAAATATACTTAAATTCTACATTTAAATAACAGAAAGTCCAGCCCACATTTTTTTGATGTGGAAGAACAATTTCCAGTACAAAATATGTACACAAATTATCAAGAAGATCCAACTCACCTATCAACTACTTTTTAAAACCTATTTACCCATTACCTAAAATATGCGATATGCCCACATGATTATAAGTTGTATAGTGTATTACCTGTACTTATTTAGTCTATACGTACTGAGAAATTACATTGACCTCTGATGGAGTGATTTTCAATTGACCATTTGGAAAAAAATCTATATAATCATTTGGGGATAATCATCTTGGGTACCTTGAGGTTAATTTCAGAAGATGCCTTTTATTATATAGAGAATTCACCTACTCACGTCAAGTCTCTTCTATTTGATTGTTTTTCTTTAGTGCAGTCTCACTTTAGTGATTTGATATGGTCAAATTTCCTATCTGCATTAGTTTGCGAGGTTGTTAGTGATTGCCTCCGTTATGTATTCAAGTAGGAGCCCTTCACAGTTCCTTTTTATGCTTGACATTTGCAATTTTTTTTAAATGTAAATTCCTTGTCCTAAATGCAAGTTCTTTTTGGCAGGAGAATAGTGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGGGTGAGTGCCTTATTGCCTGCTATCAATTTGTGCTGGTTATTTTTTTTTTTTTATAGTGTAGGGGGATGGGGGATTGCTTCCAAGTAAATAAACCACCTGCAGAGAAGAAGGCATGCACAAAGGATAGTGATGCAAATATGAAGATATTAGGTAGATTCATGTAGTGTCATACCGTGACTGCATTACTAGGATTATGAAATACTTGAGAACTGGAATTGAGCAGTCTTTGTTGTGGGATGTGTTGTGCATTGTTTGTTAATACAAGAGATGTATCAATCACACACTACTGCCCCCCTCCCCTTGCTACCTTCTTGTTGGAAAGGCATAACTTGATCTCTGTGAGTAACACAAATAATTTGGCTCAGCTATATTTCTCATTATTCGTTTTGCTCCAAATAATATTGTGAGGAGTCTTTGTTAATTGACTAGTTCTAGATTGGTTGTCAACCTATACACATCCACCTTTATCAGAATTCAGAAAAGGTTTGAGTTCTGCAACTTGTTTTATCCCGATTTAGGAATGGAAGTCTGAAATTCACAGACACTGAGCTGCCCAAGTTCAAAAACAGAGTTGGTTACATATTTGTTGAATTATTCAAAAACAGAAATTGAGCTGCGTAAGTTCTGGCTTCTCCTTTTGTTGGTTAACATGGATGATACTCATGATAGATCTCACTCTCACTCTCTCTCTCTCACACACACAAAAAAAAAAAAAATTAACACTTGCTAGCCATCTTGTTGAAAAGGCATTACCTGGACTCTGAATAAGGCAAATAGTAGCTGCATTGTTAGTACCTCTATTTTTATTTTGCTTGTTTTTTATTTGATACAGCAGGGGTGTGAGGCAGTGAAAACAAGGATTGTGTGTGTACTAAATTGTTGGTGTTGTTTGATTAAGAAGTGCAATGCAAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAG</genome_strand>
        <mrna_strand>ATGGGAGCTTACATCCACCGCTTGGGAAGCATCGTCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACACATCTTAGAATTGTTTTTTGA.................................................................................................................GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGAACATCTTCTTAGTGACTGTAATCTTCTCGTGAAAATTCTGGAGGCGGAGAAAAACTCAACGCTTGCTGCTGATCCATCCAAG.............................................................................................................CCAACAGCCTCTGTTGAGGGAAGATCCCCACCCAGGATTGGAAACATTGGGCACGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAACAATAATGGCATACAGTCGCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTANTACAATGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCAGGATGATGAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728361" ref_strand="+" ref_description="SGN-E728361 [LA17CD01]">
      <seq>caataataccttctttcaggaggcctcaggcagtggacatttttcttgttaattactctctccatctcaatttatgtggcggtgtttgagaccacaagtttcaaaagcctttctttctttcttgcctcacataaattgggagaagtatataaagatgtcattctttttggaactgactaaaaaggaatgagtgtcacatagtttaggaaaaagggagtaccatgtttcatgatatataacaaattgtgggccttgaatgtctcatttattctgtaaaaagcattttgagtttcctagccgaattcctctaatgatatttaccttaccttacaagaaattcttgccgcgattgaaggagagaatcatgcccagatttgactgttcctcacttttgatcgtttgtgtaaattttataaaagtacgccattttttcatttgagttggacacaacattttgaagaaaatataatcattacatcctttctaataccaatgggatattttcatcttttcattggattgatcatgattgtagtttgttagtctttataccagcataatattgacttttatttcatgtaacctctctcaggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataacttaagccaggccttccgctatggaatctataacaacgatgaacttgatgaggctcgtggttcacttgagcgggatgatgaggatgtctatcntgatgatgagtctgctgaagttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="3454" stop="876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3155" g_stop="3073" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3072" i_stop="2792" i_length="281">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2791" g_stop="2129" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="734" r_length="651" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1213" g_stop="1184" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="764" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E728361" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3155" e_stop="3073"/>
          <exon e_start="2791" e_stop="2129"/>
          <exon e_start="1213" e_stop="1184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAGGTGTTCTTCATATCCCTTAACAAAAGACAACATGATTGTGCATTTCTTGATCTCTCTCTATCTTTTAGCATTTAATAGTGCTGGCTAGGTTCCTGTGTTTATATCTGGAGAAGGTAATGACAGAAGGTTTGGAACATTGATAGGTAGTTGGAGAATTTATCTTTCTTATATTTAGAGTAGTTCTTTCTTAGAGCTGCATGCTATGTATAATCTTTAGAGATGAAGTAAAATGAGCACAGTAAATGTGCTTTTTGATTCATATTAAGTGCCCACACCTTTTTGCATATCTAATTATTTATAATTGAATTTGAAGTGTGGTTTTGATTTTTATCTGCAAGTCCCAATCACAGGAATGTTGTTCAGAATCGGTGGTTGAATTTTTGACTGTAAAAAGCCTCTGCTGAAAATGGTATAAGATCCATAATTCAATATAGATGTAGCAGGGTTAGACAGAGGGTCCGGGAATCTGTGCCAGCCTCTTGTAACTGTTATATGGTCATGGTATAACAGCCTAGATGTAGTAGGTTAAGACAGAAACCAGTGAGAGCTAGAATGAATTTTATTCTGTTAATAGCATCTTCCTAATTCTGTCATAATTAGGAATGTTGGTATTTAGTGATCTTCCTTATTAAATGACTTTCATTTTAAGTTTAAAGAAACCTTATCTCAAGTAGCCTAAACTATGGAGCACTCTGTAGATTGTCTGCAAGCAATTCAATACAAGTTATATCTTAAAGTGCCAAAACAATGGATGCTTGATTTTGCTTTTTTTTTTTCCTTTCCTGGTTTTTCTTGTTTTGAACCTTTTTTTGTTCAACTTCATCTTTAATCTTCACATATCAATTTTTTAAGCACATGGTCATTAAGTGTATAATCATTAAAAATGTACTAAAGGAAGACTTTATCTGCGTGCAGGCTCGTGGTTCACTTGAGCGGGATGATGAG</genome_strand>
        <mrna_strand>CAATAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT.........................................................................................................................................................................................................................................................................................GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATT-GG--G-AG-AAGT-------ATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGGATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTGGTTCACTTGAGCGGGATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425797" ref_strand="+" ref_description="SGN-E425797 [STM-45-H23]">
      <seq>atgggagcttacatccaccgcttgggaagcatcgtctgaagataatagagtttgtttcagtcttggtgagtgttagcagtgaagctgctgaaaaggagttgattcggcttggtgctgttaaacacatcttagaattgttttttgagtatccatacaacaactttttgcatcatcatgttgagactataataatttcgtgcctggagagtaagaatattcaatttgttgaacatcttcttagtgactgtaatcttctcgtgaaaattctggaggcggagaaaaactcaacgcttgctgctgatccatccaagccaacagcctctgttgagggaagatccccacccaggattggaaacattgggcacgtgacgcgaatagctaacaaacttgttcaactagggaacaacaataatggcatacagtcgcgtctgcagtgaatggattgattggcagacaaatattcttcaaaaacggaatgctgtggaaaatgttttccagtgggcttgtgggagacccacatcactgcatgaccgaatgagggacagtgatgatgatgattatcaagatagagactatgatgttgcagctctggcaaataatttaagtcaggccttccgctatggaatctataacaatgatgaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="9746" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9446" g_stop="9406" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9405" i_stop="7170" i_length="2236">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7169" g_stop="7066" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="145" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7065" i_stop="6953" i_length="113">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6952" g_stop="6787" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="311" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6786" i_stop="6678" i_length="109">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6677" g_stop="6555" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="434" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6554" i_stop="4141" i_length="2414">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4140" g_stop="4066" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="509" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4065" i_stop="2271" i_length="1795">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2270" g_stop="2133" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="647" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E425797" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9446" e_stop="9406"/>
          <exon e_start="7169" e_stop="7066"/>
          <exon e_start="6952" e_stop="6787"/>
          <exon e_start="6677" e_stop="6555"/>
          <exon e_start="4140" e_stop="4066"/>
          <exon e_start="2270" e_stop="2133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAGGTAGTTATCAAACATCTTCTTGTATGCAGAGATCGTAAATGCAAAGGTTGTTTATGCGGAGATTAATAATGAGGAGATCTTTATACATGAATTACTTGAACAGAATATTGTCTTTGAATAGTTTATTCCCCGTATTGCTAATACACGTATTTTCGATTCTCATTCTATCTTTAGATTCCACATGACTTTAATGTTTGTGTTAGTTAGTACTTCCAACCAAACGTTGCAGTTATGTTGTGATTATTTCTTTCTTATGAGGCTAACCAAATACTATACCATCTTTTCACCTTGAATTGGTCAAAATATGCAGACTTTCTTACTTTTCGTGGAGGATTAGAGGCGGAGTTTTATGGTTTGAGTAATTATTTCAAATCATCAAGTAAATGCTCTTCAAGCTTCTGTCTTGGAATTAGAAATGGATATAATTTAGTATCACTTTTGATCTAACTTAGAGAGGTCAGCATTGTCAAAGACGAAAAGTGCTTAACAACGTCAGGGTCTGATGAGCTTTAAGCGCAACACAATTCTTGAATACATTGTGCTGAATTTTATTTTGCAGGAAATGAAAAGTGTGTTCAAACTTTTTCTTCTTTCATTATTTGAGAGTTTTAATTGGTTTTTTTTTGTGAATAAAACACAAGTACACCCCACCCCCTTACTAAAATTGTTTTTCCTATACTTCGGCGGACTATTTTGAAGTGGAATTATTGTTCCCTCTTTTGCTGACATAGCATGGATTGATTTACTCTCTTAAAACGCATGAGAGGCATCGGGAAAACACTCTCTTGGCTTGGGAACTCAACTTTTGGTCGGCCAAGCTGTACCATTCAACTTCTACTTCACTCTATCTATCATTAAACGAGCTACATGACTCAGGTAGCTTGTCTCCAGAACCTCCACTTCCCACATCGAGCTTATCTCACTGACCTCCAATCCAACTCCTTTATCACACTAAGAGCTCCTTATTTAGCCGTAGCAAACAAACAATTAACATGTGCAGGAAACTACCCCATAACAAAATCCACTTACTTCACCTTGCAGACTTCAGTCCAAAACCACATCCTAGATCCATCTAAAGGGACCTTCTATATAGGTGCTTTCTGAAGAGATGCTTATAGCTCCAACTTAAGCTTGTTAGACTTAGTCCTAGGATTTTGCATTTGCTTTTTCAGTGAATGATCAGTTTTTTTTGCGTGTGATTTGTTGATTCGAGTGGTGAAAGTTGAGGTTTTTGTGTATAGAAAGGGAAGATGAAAGTGAAGCTAAAATAGGGAAAAAAAGGAGAAATGGGTAATGACATGGTGGCAGCACGTGTATATAAACACATTTTCTCATTTGGGTAAATAAATACTTCTTAGACCTGGAAGCATTCTAGATGTCCTAAGATGCTGGAATATGGATGGTAATGTGAGCAAGAAGGAAGAAAAATGGAAGATCGTCCCAGCATGTATTTGGTGGTCAATCTGAATTGAGAGGAACAAAAGGTGCTTTGAGGGGACTCAAAACAACATTCAGAATCTTAAAATGAATTGTTTAGGCCTTTATTATTTTTGGTGTGAGCAAAAACTACTAGCTCAAGCAGAAGATATTTGATGTTTTAAACTTTTGTAAGGCACAGAACTGAATCACAATATTTAAGTTGTAATACTTTTGAAGGGGTACTACATTATGGTTGTAGTATACCTGTGGATATATAGAAGTAAAGTTACCATTATAAAAAAAAAAGGGTGTGTGCTGTGAGATACAAGGAAGTGGGTAATTGAACCCCTCAAAATTCAACTGTGTAGTTCAGTAGTTGACAAATGAGGGGGCTAGTTTGGAGATCAATATTTAGCTTAAGCGTTAAAGTAGCGGCAAGTCCTCGTGTTTGTTGTACTTCGTTGAGTCCGTCAGTATTATATTTTTTGTAAATAAATTAATAAAGCTTTTCGAGCTCTCTTTAGACTTGTAAAAAAAGATTTTTGAGTATGTGAATAAGAGGACTATACTCTATCAGCCTTCCTTTATCAGAGATTTTTCATACTTCTTTGGTTTTTCCCTAGGCCCCTTTGCACTGTCCCTCCAAAAAAATGAATAATCATGTGATGCCCTCTGCTGTTCCATTCAATGAAACATTTACTTCATCAAAAAAAAAAAAAATCCTCCCGTCCACCTGCACTGTGTTTTAATGTTATGCTGGGTGGTAAATTAGACTTTGATTCCTCAAATTTTGATTTCGATCAACTGGGAATTTCAGATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGAGTAAGTGCTCTTTATAATTACTATGTTACTATATTATCAAATAACCTTCTGATTTCTGTTACTTGATAGAGTGTCTAGGTATTTGATGTCGGTTTCTTTGTTATTGAATCCAGGTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAGGTATTAATCAAAATTTAGGTGTTTTGACTCAATATTCTTAATATTACTTGTATATTGGGCTGTATATGTTGAAACCTTTGGTCACTTAAGTTTTTAAATGTGGATGCAGCCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAGGTGTTTGAAATATCTTGTTTCATGTGTTATTTGTTCATGTAGTTCTTCCAATTTGATTACGTCCTGTTTTACTGTGCTATTCAGCTACACAAGGCACAAGGATGTTTGCACTTTGAGTAGCTGATTTTGCATTTGATAAATAGAGATTTCTTAAGGTCCATTTGGCAGTTGCTAAAGTAATGTGTTCTGCATTTTCATCAAGTGGGGCAATTAGGGGAAGTAATGAGAAGCATGACACTATTGAATAGGGATAGAGGGAGTGAGAATTTTCACAGGACACAAGTGACTTCTTTATGCATATTTCATTGGTCATCGCAGAAGTTGCTCTACTCATACTACCTGGTAGTGTAATAGATGTTCAATCAACTACTCCTCAATCCCTAACTAGTTGGGATTAATTATATGAATCCTCAATATTCATTCTGCTTTATTAGAGCCCATTTCATTCCAATATTAAGTTATGTCTTTTAAAAAAGTCACTAAATCCCACATGTACATTGTTATCTAAGTCTATATGCAGACTAATGAGTCTTATGACAAATACCAAACTTAATTAAAGTGTATCAACAATTAAACTTTATTTCAGTTAGTTGGTATTGCATATATGAATCCTTTATATGAGAGATCCTGACTCTGTGTGTATGATTTTAGGTCTACCTCCTCTTTTAGCACCTTTACTCATTATAGTGTTGCACCTAGATTGCTGTACGTATGGAGGTTCACATATGACAGTGCAAACCATCTTAGACAACTTTCTCTGTTTTTATCCTCTGCATGGTATATGCACCTTGTGGTAATTTTTTTTGTCTTTTCAATCTTGTATTGCCGCACATCCATCTTAGGATTAATATTTTTATGACATCCATCTTGTGAGACCCAATATTTGATTACATATATACAACCACTCTGTGTAAATTTCTATTGCATAACACTGTCATTGTGTTCTCATATTTCAACCATCTTGTTTTAATGGATGGGTCACATCTTGATTGTCACACCTTTTCCTAGAGACTGAATGTAGATTTACATATCATTTTTTGATAACTGAGAAATCCGTTCGTGACCCGCCATTTGGACCAATCACAGCCTTTTAAACTCGGGGAATAATGGGCCTGCCCCTCTACACTTTTCCACTTAAATACCAAGCTTCGTTTTGCGTGGTGTGGTGCAGGGCGACCTAAGCCGCAAATCCTCCACCTTTTGCCACTAGAGCTAGCCTTGGGGGCAGATTTACAAATCTGTTGCATTAGACGCTACATTCTCCTGGTAGTTTACTTGTGTTGCTAGAAGAAGCTTGACTTACTAAAAGCTCTGTGTTTGGGAAGTTGATGTTGAGGTGATTCTTTTTCTTGTTTCTCTTAGATTACCTACAAAGTTGCTCTAATACCTAATCATATTTCTTAACATAGCTTCATTTTGGCAAAATTTCATGGCTGGTAGTGGACGAATGATTTTGGCTAAATTTCATTGACCTAAAGTAAGTAGGCAGTAGTGTGTTGTCTGCTGCTAGTAATTGTTGTATTGCTCGTGTATTTTTTTGTCCCTTGATTTGTGTTACTTTTTGTTGTTTCTTGTACTTCGATCAGATTGCTTTGTTATGCTTTCACTTCTATTTATTCTTTTTCTGTACTGTGTTGGAGTACTGTTTTTCCTTGAGCGGAGGGTCTATCGGAAACAACCTCTCTACCTCTACTGTAGGGTATCCTCCCCAGACCCTACTTTGTGGGACTACAGTTAGTATGTTGTTATTTAGTACCTAATGTAAGTTTTATAACTAAAATATACCTTCAGTTTCAAAAAAACAAACAAACTAAAATATACTTAAATTCTACATTTAAATAACAGAAAGTCCAGCCCACATTTTTTTGATGTGGAAGAACAATTTCCAGTACAAAATATGTACACAAATTATCAAGAAGATCCAACTCACCTATCAACTACTTTTTAAAACCTATTTACCCATTACCTAAAATATGCGATATGCCCACATGATTATAAGTTGTATAGTGTATTACCTGTACTTATTTAGTCTATACGTACTGAGAAATTACATTGACCTCTGATGGAGTGATTTTCAATTGACCATTTGGAAAAAAATCTATATAATCATTTGGGGATAATCATCTTGGGTACCTTGAGGTTAATTTCAGAAGATGCCTTTTATTATATAGAGAATTCACCTACTCACGTCAAGTCTCTTCTATTTGATTGTTTTTCTTTAGTGCAGTCTCACTTTAGTGATTTGATATGGTCAAATTTCCTATCTGCATTAGTTTGCGAGGTTGTTAGTGATTGCCTCCGTTATGTATTCAAGTAGGAGCCCTTCACAGTTCCTTTTTATGCTTGACATTTGCAATTTTTTTTAAATGTAAATTCCTTGTCCTAAATGCAAGTTCTTTTTGGCAGGAGAATAGTGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGGGTGAGTGCCTTATTGCCTGCTATCAATTTGTGCTGGTTATTTTTTTTTTTTTATAGTGTAGGGGGATGGGGGATTGCTTCCAAGTAAATAAACCACCTGCAGAGAAGAAGGCATGCACAAAGGATAGTGATGCAAATATGAAGATATTAGGTAGATTCATGTAGTGTCATACCGTGACTGCATTACTAGGATTATGAAATACTTGAGAACTGGAATTGAGCAGTCTTTGTTGTGGGATGTGTTGTGCATTGTTTGTTAATACAAGAGATGTATCAATCACACACTACTGCCCCCCTCCCCTTGCTACCTTCTTGTTGGAAAGGCATAACTTGATCTCTGTGAGTAACACAAATAATTTGGCTCAGCTATATTTCTCATTATTCGTTTTGCTCCAAATAATATTGTGAGGAGTCTTTGTTAATTGACTAGTTCTAGATTGGTTGTCAACCTATACACATCCACCTTTATCAGAATTCAGAAAAGGTTTGAGTTCTGCAACTTGTTTTATCCCGATTTAGGAATGGAAGTCTGAAATTCACAGACACTGAGCTGCCCAAGTTCAAAAACAGAGTTGGTTACATATTTGTTGAATTATTCAAAAACAGAAATTGAGCTGCGTAAGTTCTGGCTTCTCCTTTTGTTGGTTAACATGGATGATACTCATGATAGATCTCACTCTCACTCTCTCTCTCTCACACACACAAAAAAAAAAAAAATTAACACTTGCTAGCCATCTTGTTGAAAAGGCATTACCTGGACTCTGAATAAGGCAAATAGTAGCTGCATTGTTAGTACCTCTATTTTTATTTTGCTTGTTTTTTATTTGATACAGCAGGGGTGTGAGGCAGTGAAAACAAGGATTGTGTGTGTACTAAATTGTTGGTGTTGTTTGATTAAGAAGTGCAATGCAAAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGTGTTTGATTGGGCACAAAGTTTAAGAAAGAATGAATTTTGAAACTTGTGGTCTTGAACAAGCCGTAGATATTTGTATCATTAAAAATCTTCTCATTAAGGGTAGAATGGGAAGTATAAAATTCATTTGTTACTCCCTCTGTCCCGATTTATGTGGCAAACTTTCCTTTTTAGCCTGTCCCAAAAGGAATGATACATATCTATATTTAGTACAATTAAACTTTTTAAAATGTCTATGTTACCCTTAGTGAGATGATTTATAGCCACACCAACATCTATGGCTTGTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGA</genome_strand>
        <mrna_strand>ATGGGAGCTTACATCCACCGCTTGGGAAGCATCGTCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACACATCTTAGAATTGTTTTTTGA.................................................................................................................GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGAACATCTTCTTAGTGACTGTAATCTTCTCGTGAAAATTCTGGAGGCGGAGAAAAACTCAACGCTTGCTGCTGATCCATCCAAG.............................................................................................................CCAACAGCCTCTGTTGAGGGAAGATCCCCACCCAGGATTGGAAACATTGGGCACGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAACAATAATGGCATACAGTCGCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAATTTAAGTCAGGCCTTCCGCTATGGAATCTATAACAATGATGAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576858" ref_strand="+" ref_description="SGN-E576858 [60142]">
      <seq>gctaagtataattcttttatgagcatgataacaattgaaccgaatccaatcttatcaaagactctgctccccacctttttatagggcttcctgggttcaagatcattgttggggttgttttctttttgttcctagatccaaattgttgaaaattctcttcggggtcggttcttgattctgaaaaaatggctatgttttggcgtatggctggcctctccactgcttctccagtggagacaattttggataaggaaaattttgcactgggatgagctcttgggacgaggatgaaataattcaagaatgtaaagctcttaatggacgccttattaattttctgcgagaaagagctcaagttgaacaacttgtcaggtacatagtggaagaggctccagaagatgctgagaagaaacgaacttttaagtttccttttattgcttgtgaaatctttacatgcgaggtggacataattcttaaaggctttggttgagaatgaggaggctaatgagcctgctattctcattttttggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="19197" stop="13093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18895" g_stop="18693" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="230" r_length="205" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18692" i_stop="15313" i_length="3380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15312" g_stop="15209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="336" r_length="106" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15208" i_stop="13838" i_length="1371">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13837" g_stop="13751" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="423" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13750" i_stop="13608" i_length="143">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13607" g_stop="13532" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="500" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13531" i_stop="13424" i_length="108">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13423" g_stop="13393" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="533" r_length="33" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E576858" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18895" e_stop="18693"/>
          <exon e_start="15312" e_stop="15209"/>
          <exon e_start="13837" e_stop="13751"/>
          <exon e_start="13607" e_stop="13532"/>
          <exon e_start="13423" e_stop="13393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAACAATTGAACCGAATCCAATCTTATCAAAGA--CTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCAGTAACCCCTTTTATTCCCTGACTCATATTTTTATACTTTTTTGTGAAAGTTTATGTACGATTTGAATGTTTGGGGTGCTATATCATCTAGTGTTTATTTATTGGAATTGTATTGGGTGGTTTGTTTTTTAAGAATTTTGATTAATGCAAATGGGTTTTTGTTGAATTTCTTGTTATGCATGTTGTTTTGTGTTTTAGCAGTCTTAATTTTGAATTCAGAATTGTGTAAGGGAAGATTGGTAATGTGATTGTTCTGGACTTTTATAGTGGGGAGTACTTTTTTGGACTGAATTTCTAGTGGAAGTTAATGTTTTGGGGGTCTGGTGTTTACTTCTTATATTCAGATTGTCTTAATTATGCAACTCAAAGAGACTGAGTGTTAAATTCCTTATTGAAAGAGGGTAAAATGAAGAGAGTTGAGTGTTAGATGGACTTGGATGATGGTGGCATTTTTAAAGATATTTTTTGGGTTAATTTTTAGAGCAATGGAACAGTGGCAGAGGAGAAGTTTATGATGGACTGGTGGGCCTTATGATTGGATCTAATTTCTTGAACAAATAGCTGTGGTTTGATGAATTATACATCTTTATAACTGCTAATTGAAGAAAATAGTACCAATGAAGTTCCTGTCTATTAGGTCCTCAATGTTGAACCGCAATTCTACTTTGTGCAGCATTGTGGAATTTTTCGAGGAATGTACTTTTTGTAACTTGCTTTTTGTCTGAACTAAGTGCTAGATTATGTTGCAAATTTTAAGCTATTCTGCTTTCTAGATTGACATCAACGAAGTAAATGATATCTCTTGGTAAAATTATGTTCTTCCCAATGCACTATTTCACTTCAATTCTTATGCCACATACTTGGGCAATGTACCTTTTGCCCATACTAGACACCTTTTCTAAGCATGCCCCGGTAGCCTTTCATTTGGAATTTGTTGTTTTTATGGAATTTAGAGGAGCTGATCCGGGGAATGGAAATCCATTTCTTTGTACCACATACATAGGCCATTTCAAGTCCTATGCCATATACTTGGGCAATTTACCCTTTTCCCATCCTAGACACCTTTTCTAAGCATCTCCAGATAGCCTTTCATTAAGAAGTTGGTTGTTTTTATGGAAGTTAGAGGAGCAGATTCCAGGAATGGAAGTCCATTTGATCGTGCTCTGAAACTTTAAGCCATATAATTGTACTAAATAGGTACAATATATATTTTTCCCCTTTACCCAAGAGAATTCCCTGAGGATCAGTGGCGCACAGTTAGAAACTTGGTGGATAACCCCCTTCTTTTTTACACTTAATACCAGACTTTTGTCTCTAGAGGGTTCAAAACTTGTTATGTGTGCCTAAACCACACATAAAATATAACACCGATAGTATAAGATATCTAACACCTATTTGTTGACTCAATTGTTTGCTAGCTTATTTAATGGGCTAACTTGATAAAGGCTTAACTAATTGAATAATGATGTGACACAATGGCTATGAGTTTTTTTTTGGGGGGGGGGGGGTAAAGGATAAATATGGAATTTTGGAACGAGGTGGAGAACTAGAGACATCACTTTGCCTTTCAGGCGTTGTTTAATTTTGGGGAAATAGATGGCGCGGGGATGACACTTTGAAAGATGATTTCCAGTGTCTCTATAGAATTTCTTGCCAGAGAGATAGTTCAACAAATTAGGGGGACATAGGCGGAGAGACTTTTTGGGACTTGAGCTTTAGAAGGATGTTAAATGATTGGGAAGTATCAATTGTAATTTTAATTGTCTAAAATAATAAAATGATTGGGGAGTAGGTGAGCTCCAAAGATTGTTAGTCTTAGTACATAGGCAAGACAACCCTATTGATAAGCTTGATGCATGGTGGTAGAGATTTAAGGGAAAATGGCATGTTTATTGTGAAGACTTTCTATGAGAATCTATTGCTTAGGGAGGAGCAAGTGTTTCCATGTAATGCAATATGGATCCCAAAGGCACCAAGGAAGGTGTGCTTTTCACTTGGTTAGCCATAAGAGGCTCGATTTTACAATAAAGAACTTAAAAAAAGCAGAAGATTGTATTCATCGGCTGGTGTTACATCTGCAAGGAGGCGGGTGAGGATGTGGATCATCTTCTCCTACATTGCAGTTTGACAATGAGTGTATGGTGGGATATGTTTAGGTGGTTTGGCGCTCCATGGTTATGGAAAAAATGGTGAAAGAATTGATGTTCAGTTGGAAGAGTGGGAGGAGAAGAAGACGAAGGGATGAAATATGGTGCAACTTGCATAATGTGGGTTGTCTGGAGAGAGAAGAATAAAAGAGCTTTTGAAGGTGTAGAGTCGAGTTCCCCTCAAAGTATCATTCATTCCCTTATTTTATTTTGGTGCACTCAGAAAGTCCCCTATTGTGTAGACGATTGGGTGGAGTTTTTAGAGATTCAGTTGATTGTGTAGATTCTTTACCTTTTGGTATACCACTTGTGTATGGTCATTTTATGGCCTTGTTTATTATATGAAATATGTTTACTTGATCAAAAAGATGATGTGACACAAAGGGATGGTTTCATGATGATAATGTAGAGTGAACATGTCAGTTAACTGGACTAATGTAGATTGTTGACATAACAGTTAAATTGACATGTACTGTTCCCTAAAAAGCAGTTGTAGAGTGCTGATTTTACATGTTAGCTACGGGGACAAATGGATCTTCTTCTAGACAATGTGGATGTGTAGTCACTTTATATTACACTGGAAGGATACAGGGTTTCACCACAGCAATCAGTGTCATCTAGATGGTTAAAAGAGACGAAAATAATTGAATTATTAGGAAAGAAGAAAAAACTTTTTCTGTGCTCATGACCTATGGCAAGTCTACTAAATTGACATGTACTGTTCCCTAACAAGCAGTTGAGAGTTTCTGATATGAAGGATAAGGAGGAGACAAAAAAGAGAACTTTTCAAAGATTTTAGTAACAACGTAGGGACTCCATGTATAGTAGTTTGTCCTTTGGAAAACACAAGGTTCTTTATTAAATTGGACCTTGCTAGTGTTATTTAAACAGTAGGTAGGCAGTGAATGTATGACAACTATCTCTCAAGCACATCTTTAGTTCCAATCTCAATAATTAAATTGAATATTCTTCATCATATATTATGGAATTTAAAAATATTCTGCAACTTTTGCTTTGGAGTATTTCAGAAATATTCTTCTACATAAATTTTATGGATGCAAGCGCAAATTAATATTTGATTTCATTACTTCTCGGTTTTCAATATTGCTTACTCCAAAGCTTTGTATCAGTGTTCAATTGAATATTGATGTTGTTTCTCAATAAATAATGTGTGTGGATATTTTATAATAAAAATAATGTGCATAGATTTATAGGATACACTTACTATTTTCAGGTGGAGACAATTTTGGATAAGGAAAATTTTGCACT-GGATGAGCTCTT-GGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTTGTAAGCACCTTATTCGCTTGGTATGCTAGATATAAGTTGTAATAAAATCAAGTTCTATTAATCTTGGATGTGATGTACAAACTACAAAGTATATCCCAACCATTGATGTTTCATGGAAAATCCATTTAAAGTAAATATCTTTTATTGTGAAAAGAAAAGTCTGGATTTGCTGCTGTATGATGAGGTTTATCTGAGGGAGTCTAGTGATGCATGCGTGCATTTGAAGCTTTATTTACGGTTTAAAATTGGCTAGTCTGGATTTAGTAAGAACAAGTGGTTAACTTTGTAATTCTGGTATGTTAATTAGGACTACAACAATTTTAGTGTGCACCAAATAAACATGCCAAGTTATCCTTCTTGAACACAATTTTTTGTTTTTTGTTTTTGTGGGTAGGGTGGGGGTGTTGGTGGGCTGAGGCAGTGCTTGTATTTTAACAAAACTTAGTTTTGTTTCACTATAGACTGTAAAGATCAGTGTTCTTACGAGTTATCAATTAAATGGTGAAGCAATGGGCTTCATAAAAGTGTGCACTTGAAACAATGACAAGCAATGTGATCCCAATGCGAAGTAGTCTCGGTTATTTGAATCTCAACTTTGAATAGTCGGATTAATATTAGCGTTATTGTTTATTGGATTGTGTAATCAGTTATTTTAATTGCATTCTGATCATTATTTTACTAAATTCATGTAATTTTGGTGATCTTTTTAATGTTGTGAATTCTGAGTTTTACTTCAAAGAAGCATATGCTTCACTTCCAGTATTTTGCTTTAAGCATCATGGACCTTGTCGCTATTTTTTTTCGCTTTTGCTTTTTAAAATACGAGTAAACCCTTCGGGGTGACCCAGTGGTTTGAGCTGGGACTTCCATGTTGGAGGTCACAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTAGAGCTCGTCACACCAGGCTTGCCTAGTGCGGGTAACCTCTCCTATGTGGTCTGCGAACTATCGCATAGGAGCGGGGTTTTACCCTTTGCGCCCCCAAAAGGGTGGCGGCTGCGGGTTTTCCTTGTCGTCAAAAATAAAAATAAAAATACGAGTAAGATATTTTTGTTTGTTTAGACAATATGGAAGAAGTATCATGTGATGACAGGCTTCTATTTTGTAACTGTCTAACTTTGGGGGACTACCCAGTTTGGTATAGAATACCTGCTAATACATAGAATGTCACCATTATAAAAATGGTAATATTATGGAACTTCTGGTGCCATCTCTGCACAAAATTTTTCTTCTTGTAGGATTTAATGGTCATTTCTTGGAAGAACCTGTCAAAAAAGGAAGTCATTCCTTGGAAGAAACTGATCATATTATGCTTTTCTTTCTGACAGTCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAAGTGAGTGTCTGACTGGTGCTGGAAAGTTATTTACATTTCATATGTTATAGGCTCTGAATATTTCTTTGGATGAAAATATGAGTTCTCTTTTTCCTTGACCCCAGTGCATGTATGAAAAGATATCTTGTTTTACTGTGCCACAGGTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAA-GCATTGGTTGAGAATGAGGAGGTATTCACTCTTCTTTTTTTGTCATATATCTTTATTCTGCCTTTGTACTATATGCTCAGTTCCTTGAATATTGTTTATATAAATTGGCTTTGTCATTTTGGATGTCAG-CTAATGAACCTGCTATTCTCA-TTTTTGGAAC</genome_strand>
        <mrna_strand>TGATAACAATTGAACCGAATCCAATCTTATCAAAGACTCTGCTCCCCACCTTTTTATAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCGGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGGATGAGCTCTTGGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCTGAGAAGAAACGAACTTTTAA...............................................................................................................................................GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGGCTTTGGTTGAGAATGAGGAG............................................................................................................GCTAATGAGCCTGCTATTCTCATTTTTTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432609" ref_strand="-" ref_description="SGN-E432609 [STM-57-E10]">
      <seq>agaggaatctcaaattgatatttcgtgctccagcaacttcccttgaatgctgttgtttcatcaataatgatgagtttctatctggttctgatgatggaagtattgagcactggaacgtaacaaggaagaagcctgtccacattgtaaaaaatgcacatgcttcattgcaatctgtgggaattgaacagagcaatggggccctatcaaatggccacatggaaaatggcacccttaatcctcagtgtcattcctcatcagcactctcttgggttagtgcgctgacagtctgcagaaatagtgatcttgcagcatcaggagctggcaacgggtccgttcaactgtggacaattgaaaatgaatcaaaaggcatccggccattgtttgagctcccagtggctggatttataaattccttagttttttcaaaatcaggacagttcttggttgctgcagtagggcaggaacctcacctaggaaggtggggacgtattgctgatgttcgaaatggagtttttgtgcatcctttgaagcattcgtgatattgagcttgttgctcattgtccattttggctcatgctaaaaggaggaatagccttctctgtactttcttgtgaggtcaatatttatttttatgttggcaaaaattttgatctatcaattttgatatatttttattctctcttttcacatttgttcatattgattcagctacgtaatagagaaatacagaacaattttagtgtattaattgaaattccaatgacttcagtgagtttgaaggttttaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="25313" stop="20261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25013" g_stop="24796" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24655" g_stop="24480" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="395" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21864" g_stop="21799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="461" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21798" i_stop="20871" i_length="928">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20870" g_stop="20551" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="796" r_length="335" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E432609" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432609" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25013" e_stop="24796"/>
          <exon e_start="24655" e_stop="24480"/>
          <exon e_start="21864" e_stop="21799"/>
          <exon e_start="20870" e_stop="20551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAATCTC-AATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGGGTAAGCTTTCATTTTGTGTTTTTCTGTTATCTCTCTCCTATGATAGAATTCTTTTAGTTGTATTTTCAATATCGATATTTTGCTTCAATATGAATTCTTTCACCAAAAGTTAATTGAAAATCTAAATGTGTTTCTTGCAGAAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTGGTAAGGAATCTATCAGTGTGTACCCATATGTTTTGTTGGAACTTCTTTGGATTTAGTTTGGTAAACTAGGAGTCTGTGACTTAATTATACCCAGGAGTAGAGGGGATATTGTGGGTGAGGTGTACTGGATTTTGTGGCTCACATAACATCTGCTAGTATTACAAAGGCGGAAAATATTGTGTTATAAAGGCATGATGGGCTACCAACACTTTACAGGTCTAGTGACATGTAAACCCCACAACATTATGTTTCGACTCAATAGAAAAATGATAACTCTGCAGGGGTTTTAAGTTGGCTGTAAGAATGCAGAACTGGTATGAGTTTAGACTGTTCAGTATTTTATTCAAATCTATGGCTGTTCGTCCAAGCATGCCGAAAATGGGCAAGTCGAAATGTGCTGCCAATTCTTGTTCTTCTTCTCTTTTTTCCAAGCAAGTGCCAACTAAAACAAAATTCTGCCATTCCCAACATAGTTCATCTGAATATCAGATTAGTTTTATCAGTCCAATCACACTGAAGCTTATTCTGGAAAAAAATGAAGAGCTATTAACAAGATCATTTTTTAAAAGGTATTGTTAATGTTCAATTAGCACTAAGAAAGTGCAGATCTGTACTGGTATACAAGGCAAAGAGCATAGTTAGTCAATTACCATTTCTTTTCTTTTTTTTTCACCAAAAGAGAAAAACATGTATGCAATTTAACTTGATCTTCTGGATAGGATTGACTCTGCCTTTAGTATCCTTGCATCCCTTTCTTTCTGCTATACATGCAGGGATTGCGTTCCACCACCATTTGTTCTGCCTCTTTGAATTCCTTTGCTGCACCAGCATCTTAGAATGTCCATTGGTATCCCTAGGTATCATCCATTTTAGACCCACCATATATAAGAAAAGCTGCCAGGATATTTTCTAAAAAATTATGCCATGGTTGGTCTGTTATTGGACAATGAAGGAATAAATGGCTAACTGTTTCTGGGTTCCTCCGACAGAAAAATTCACCCAGAACACAGCTGAAAACCACTTTTCTGCCAATTTTCTTGTGTCAAGCACGATTCTTTCTCCACCAATCAGGAGAAGCATGCAAATTTCATTTGTATATCCACTTCCCAGATCTGTTTCCATGGCCAACATACAACATAGTGACTGTTGCACACACCTGTAGTGAGACAAGTGTATTATGATTTTACTGGGATATTGAATTGACATAGTCTCCTTTCCCTGCCAAAAAATGTGACAGTATATCAATTCTATCCACAATCTCCCTAATTCTCCCTAACTATCACAAAGGGGTTGACCTAGATATTAAAGATCTGGAGTGGAAAAAGAAGAAGAGATGACTGTTTCAAAACAAGAGAAAAAGAGCTGGAGTAACAGCCTTAGGATCAAGAATAAAATCTCAGCAGAGGTCAGATTTGGTGAATCATCCCATTCTACAAGTCTTGGTTGGATTAGTTGAGGTGCAAGCACAAGGTTGTTTGGAGAAACATTTTCTGAAAAAGGGGTCTCTTACTATCATCTCCTTTGTAATACAGTCTGACCTTTTTTTATCAGCAAACAAGACAAATCCGTGAGTTTAAAGTAAAGTATTCAACACTTATATTCTTAACTCATTGGCATTAGCACTGGTTTTAAACTAAAGTTCCCTCTGGATATGTAGAACAAATAGAGCTTTTAAAAGGTAACTGACTTCAGCAGCTGTCAACAATGTTTTTTTTTTTTTTTTTATGATAAGGAAAACCCTCAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCCCCGCTCCTATGTAATAGCTCGCAAACCACATAGGAGAGGTAACCCGTACTAGGCAAGCCTGGTGCGACGAGCTCAACCCAGAAGGCAAACCCCTTGCTTTTGTTGACAAGGGGTTTCGAACTTGAGAGTTGAGACCTCCAACATGGAAGTCTCAAGCTCGAAACACTGGGCCACCCCGAAGGGTCACAATGTTGTTTGTAGATTGCCTAGTTAGTTTGCATTATCTATGTTCAAGTTGAGTTCTTTGACATCTTAAATCAAAGTCAATCTTCCAGTTAGTTGTTTGATGTGAATATAAAGTAACCCTTTATCTTACAATGAATTTCTTAAGCAGTTAACCATATATGAACTCTGCTAAACGTTACAAGTTCCCCCACCCCCACATCGTATGTCGGAAAAGGATATATCCTCACCATAGGAATAAAGGATTGCGGTACTCTACCTTTTGGGTTACCCTTGTATAGTGCCAGCCTTTGGTCATGCTTGTGAATGAAAATACTTTTACTTGATTAAAAAAAGAATGAAGGTCTGCATTCTTGAAGATTTCTTAATAGCAAGATATTTTTTTACCTATCAATAGAAACAAAAAAAGTTTAACGTTCTTGCTTATCACGGTTGTTCATGCACTTAATAGTAAACATATATTGGCGTGTCTTTATCCTTGCTCACTGTTCTTGATGCTCAATGAAATTGGCAAATGAGATTAAGCGTGCTCAAGTCATTGGGCTTTATTATAAGCAATATTTCCGGGGCTATTTGAATGCTGCTTGTGCCTTGTAGACTAATGTTGCTTCTTTAGAACAATGCAATGCTGATATGTTCATTGTTTTAATGCAGGCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAGGTGAATGGTTCTATCTCTATTTTTATGTTTCAATGTTTTCCAACTTTGCAGAACAGATCCAAAAGATTTAATTTCTTCCATATTTGTTTGAATTGATGATCCATCTTCTGGATACAATTGTATAATACATCACTCAACAATTTTTTGCTTGGCCAATTCTTTTTGACTGTGATCAGTGTCCTCTTAGAACTATCGGTATTTGAGATGACAAGTTAATTCTTTTATTGACGGATTAGAATTTTTTTTTGGGATGATTAAGTTATAGTTTCTTAGTATGATTTCCTGTCTTTGCCGTTCCTTGTTTGGACGTTTTCAGTAAAAGTCTTAATTCTTCTTCGTCCTTCAAAGAACCAAATCTTTTTCCTTTTTTAGTTTTTCACGAAGTTATCATTTCTTCTGCTGTGTTCTATCCTTGAGTATGTTCAAAAGGTTTGCTAACATGTGCCTACGTGAAACTTGAAATTTGATTATTATGATGGTAGCAAGATTCCCTCCCTTGTTTGCACAAAGATTATTTAGAACTTCTTAGGGTATGGGGAACAGAGTGTGGAAATGATAAGAACATTTTGAGTTGGTTGCAGAAAGCTAGCATAGATATATGGCACATTTTTGGAGTTGAAAGTGACTACTTTTTCTCCCTTGTAGATGAAAGAACATTTAGTTCCATATCCAAAAAGCTTCTTAGATATAGGCGTAACTGTATCTGTGGACCAAGACTCGTCTGGGTAGAAAATACTATGTTTTGAGTCAGACTTGGGTTATTGATCTGAGTACCTTATTTTGTAATGAACATGGTTTCCTGATGATGTGCAAAATATCATCCAATATTCTCTAGCACAGGGATTCATTGAATTCACACCTGAAGCATCTTTAATAGTCCATATATTGCTATTTTATCTCATGCACCATCATCTGCTCTGATATGCAGGAACCTCGCCTAGGAAGGTGGGGGCGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATACTGAGCTTGTTGGTCATTGTCCACTTCGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGC----A-----A---A--AATTTTGATATA-TTTTATTCGCTCTTTTCACCTTTGTTCATATTAATTCAGCTACGTAATAGAGAAATACAGAACAATTTTAGTGTATTAATTGAAATTCAAATGATTTCAGTGAGTTTGAAGGTTTTACTTAATACTT</genome_strand>
        <mrna_strand>AGAGGAATCTCAAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCTGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG............................................................................................................................................AAAATGGCACCCTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAACTGTGGACAATTGAAAATGAATCAAAAGGCATCCGGCCATTGTTTGAGCTCCCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTCACCTAGGAAGGTGGGGACGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATATTGAGCTTGTTGCTCATTGTCCATTTTGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGCAAAAATTTTGATCTATCAATTTTGATATATTTTTATTCTCTCTTTTCACATTTGTTCATATTGATTCAGCTACGTAATAGAGAAATACAGAACAATTTTAGTGTATTAATTGAAATTCCAATGACTTCAGTGAGTTTGAAGGTTTTAAAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561397" ref_strand="-" ref_description="SGN-E561397 [17382]">
      <seq>atctggttctgatgatggaagtattgagcactggaacgtaaccaaggaagaagcctgtccacattgtaaaaaatgcacatgcttcattgcaatcagtgggaattgaacagagcaatggggccctatcaaatggccacatggaaaatggcacccttaatcctcagtgtcattcctcatcagcactctcttgggttagtgcgctgacagtctgcagaaatagtgatcttgcagcatcaggagctggcaacgggtccgttcaactgtggacaattgaaaatgaatcaaaaggcatccggccattgtttgagctcccagtggctggatttataaattccttagttttttcaaaatcaggacagttcttggttgctgcagtagggcaggaacctcgcctaggaaggtggggacgtattgctgatgttcgaaatggagtttttgtgcatcctttgaagcattcgtgatattgagcttgttgctcattgtccattttggctcatgctaaaaggaggaatagccttctctgtactttcttgtgaggtcaatatttatttttatgttggcaaaaattttgatctatcaattttgatatatttttattctctcttttcacatttgttcatattgattcagctacgtaatagagaaatacagaacaattttagtgtattaattgaaattccaatgacttaagtgagtttgaagggttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="25235" stop="20260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24935" g_stop="24796" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24655" g_stop="24480" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="317" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21864" g_stop="21799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="383" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21798" i_stop="20871" i_length="928">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20870" g_stop="20560" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="710" r_length="327" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E561397" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24935" e_stop="24796"/>
          <exon e_start="24655" e_stop="24480"/>
          <exon e_start="21864" e_stop="21799"/>
          <exon e_start="20870" e_stop="20560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAA-CAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGGGTAAGCTTTCATTTTGTGTTTTTCTGTTATCTCTCTCCTATGATAGAATTCTTTTAGTTGTATTTTCAATATCGATATTTTGCTTCAATATGAATTCTTTCACCAAAAGTTAATTGAAAATCTAAATGTGTTTCTTGCAGAAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTGGTAAGGAATCTATCAGTGTGTACCCATATGTTTTGTTGGAACTTCTTTGGATTTAGTTTGGTAAACTAGGAGTCTGTGACTTAATTATACCCAGGAGTAGAGGGGATATTGTGGGTGAGGTGTACTGGATTTTGTGGCTCACATAACATCTGCTAGTATTACAAAGGCGGAAAATATTGTGTTATAAAGGCATGATGGGCTACCAACACTTTACAGGTCTAGTGACATGTAAACCCCACAACATTATGTTTCGACTCAATAGAAAAATGATAACTCTGCAGGGGTTTTAAGTTGGCTGTAAGAATGCAGAACTGGTATGAGTTTAGACTGTTCAGTATTTTATTCAAATCTATGGCTGTTCGTCCAAGCATGCCGAAAATGGGCAAGTCGAAATGTGCTGCCAATTCTTGTTCTTCTTCTCTTTTTTCCAAGCAAGTGCCAACTAAAACAAAATTCTGCCATTCCCAACATAGTTCATCTGAATATCAGATTAGTTTTATCAGTCCAATCACACTGAAGCTTATTCTGGAAAAAAATGAAGAGCTATTAACAAGATCATTTTTTAAAAGGTATTGTTAATGTTCAATTAGCACTAAGAAAGTGCAGATCTGTACTGGTATACAAGGCAAAGAGCATAGTTAGTCAATTACCATTTCTTTTCTTTTTTTTTCACCAAAAGAGAAAAACATGTATGCAATTTAACTTGATCTTCTGGATAGGATTGACTCTGCCTTTAGTATCCTTGCATCCCTTTCTTTCTGCTATACATGCAGGGATTGCGTTCCACCACCATTTGTTCTGCCTCTTTGAATTCCTTTGCTGCACCAGCATCTTAGAATGTCCATTGGTATCCCTAGGTATCATCCATTTTAGACCCACCATATATAAGAAAAGCTGCCAGGATATTTTCTAAAAAATTATGCCATGGTTGGTCTGTTATTGGACAATGAAGGAATAAATGGCTAACTGTTTCTGGGTTCCTCCGACAGAAAAATTCACCCAGAACACAGCTGAAAACCACTTTTCTGCCAATTTTCTTGTGTCAAGCACGATTCTTTCTCCACCAATCAGGAGAAGCATGCAAATTTCATTTGTATATCCACTTCCCAGATCTGTTTCCATGGCCAACATACAACATAGTGACTGTTGCACACACCTGTAGTGAGACAAGTGTATTATGATTTTACTGGGATATTGAATTGACATAGTCTCCTTTCCCTGCCAAAAAATGTGACAGTATATCAATTCTATCCACAATCTCCCTAATTCTCCCTAACTATCACAAAGGGGTTGACCTAGATATTAAAGATCTGGAGTGGAAAAAGAAGAAGAGATGACTGTTTCAAAACAAGAGAAAAAGAGCTGGAGTAACAGCCTTAGGATCAAGAATAAAATCTCAGCAGAGGTCAGATTTGGTGAATCATCCCATTCTACAAGTCTTGGTTGGATTAGTTGAGGTGCAAGCACAAGGTTGTTTGGAGAAACATTTTCTGAAAAAGGGGTCTCTTACTATCATCTCCTTTGTAATACAGTCTGACCTTTTTTTATCAGCAAACAAGACAAATCCGTGAGTTTAAAGTAAAGTATTCAACACTTATATTCTTAACTCATTGGCATTAGCACTGGTTTTAAACTAAAGTTCCCTCTGGATATGTAGAACAAATAGAGCTTTTAAAAGGTAACTGACTTCAGCAGCTGTCAACAATGTTTTTTTTTTTTTTTTTATGATAAGGAAAACCCTCAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCCCCGCTCCTATGTAATAGCTCGCAAACCACATAGGAGAGGTAACCCGTACTAGGCAAGCCTGGTGCGACGAGCTCAACCCAGAAGGCAAACCCCTTGCTTTTGTTGACAAGGGGTTTCGAACTTGAGAGTTGAGACCTCCAACATGGAAGTCTCAAGCTCGAAACACTGGGCCACCCCGAAGGGTCACAATGTTGTTTGTAGATTGCCTAGTTAGTTTGCATTATCTATGTTCAAGTTGAGTTCTTTGACATCTTAAATCAAAGTCAATCTTCCAGTTAGTTGTTTGATGTGAATATAAAGTAACCCTTTATCTTACAATGAATTTCTTAAGCAGTTAACCATATATGAACTCTGCTAAACGTTACAAGTTCCCCCACCCCCACATCGTATGTCGGAAAAGGATATATCCTCACCATAGGAATAAAGGATTGCGGTACTCTACCTTTTGGGTTACCCTTGTATAGTGCCAGCCTTTGGTCATGCTTGTGAATGAAAATACTTTTACTTGATTAAAAAAAGAATGAAGGTCTGCATTCTTGAAGATTTCTTAATAGCAAGATATTTTTTTACCTATCAATAGAAACAAAAAAAGTTTAACGTTCTTGCTTATCACGGTTGTTCATGCACTTAATAGTAAACATATATTGGCGTGTCTTTATCCTTGCTCACTGTTCTTGATGCTCAATGAAATTGGCAAATGAGATTAAGCGTGCTCAAGTCATTGGGCTTTATTATAAGCAATATTTCCGGGGCTATTTGAATGCTGCTTGTGCCTTGTAGACTAATGTTGCTTCTTTAGAACAATGCAATGCTGATATGTTCATTGTTTTAATGCAGGCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAGGTGAATGGTTCTATCTCTATTTTTATGTTTCAATGTTTTCCAACTTTGCAGAACAGATCCAAAAGATTTAATTTCTTCCATATTTGTTTGAATTGATGATCCATCTTCTGGATACAATTGTATAATACATCACTCAACAATTTTTTGCTTGGCCAATTCTTTTTGACTGTGATCAGTGTCCTCTTAGAACTATCGGTATTTGAGATGACAAGTTAATTCTTTTATTGACGGATTAGAATTTTTTTTTGGGATGATTAAGTTATAGTTTCTTAGTATGATTTCCTGTCTTTGCCGTTCCTTGTTTGGACGTTTTCAGTAAAAGTCTTAATTCTTCTTCGTCCTTCAAAGAACCAAATCTTTTTCCTTTTTTAGTTTTTCACGAAGTTATCATTTCTTCTGCTGTGTTCTATCCTTGAGTATGTTCAAAAGGTTTGCTAACATGTGCCTACGTGAAACTTGAAATTTGATTATTATGATGGTAGCAAGATTCCCTCCCTTGTTTGCACAAAGATTATTTAGAACTTCTTAGGGTATGGGGAACAGAGTGTGGAAATGATAAGAACATTTTGAGTTGGTTGCAGAAAGCTAGCATAGATATATGGCACATTTTTGGAGTTGAAAGTGACTACTTTTTCTCCCTTGTAGATGAAAGAACATTTAGTTCCATATCCAAAAAGCTTCTTAGATATAGGCGTAACTGTATCTGTGGACCAAGACTCGTCTGGGTAGAAAATACTATGTTTTGAGTCAGACTTGGGTTATTGATCTGAGTACCTTATTTTGTAATGAACATGGTTTCCTGATGATGTGCAAAATATCATCCAATATTCTCTAGCACAGGGATTCATTGAATTCACACCTGAAGCATCTTTAATAGTCCATATATTGCTATTTTATCTCATGCACCATCATCTGCTCTGATATGCAGGAACCTCGCCTAGGAAGGTGGGGGCGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATACTGAGCTTGTTGGTCATTGTCCACTTCGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGC----A-----A---A--AATTTTGATATA-TTTTATTCGCTCTTTTCACCTTTGTTCATATTAATTCAGCTACGTAATAGAGAAATACAGAACAATTTTAGTGTATTAATTGAAATTCAAATGATTTCAGTGAGTTTGAA-GGTTTTAC</genome_strand>
        <mrna_strand>ATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACCAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG............................................................................................................................................AAAATGGCACCCTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAACTGTGGACAATTGAAAATGAATCAAAAGGCATCCGGCCATTGTTTGAGCTCCCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTCGCCTAGGAAGGTGGGGACGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATATTGAGCTTGTTGCTCATTGTCCATTTTGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGCAAAAATTTTGATCTATCAATTTTGATATATTTTTATTCTCTCTTTTCACATTTGTTCATATTGATTCAGCTACGTAATAGAGAAATACAGAACAATTTTAGTGTATTAATTGAAATTCCAATGACTTAAGTGAGTTTGAAGGGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597549" ref_strand="-" ref_description="SGN-E597549 [67419]">
      <seq>ggtcatcaaagtgaagttctaaccattgattctttgaggaaagaaagggttttgacagttggacgagaccgaaccatgcacttatggaaggttccagaggaatctcaattgatatttcgtgctccagcaacttcccttgaatgctgttgtttcatcaataatgatgagtttctatctggttctgatgatggaagtattgagcactggaacgtaacaaggaagaagcctgtccacattgtaaaaaatgcacatgcttcattgcaatcagtgggaattgaacagagcaatggggccctatcaaatggccacatggaaaatggcacccttaatcctcagtgtcattcctcatcagcactctcttgggttagtgcgctgacagtctgcagaaatagtgatcttgcagcatcaggagctggcaacgggtccgttcaactgtggacaattgaaaatgaatcaaaaggcatccggccattgtttgagctcccagtggctggatttataaattccttagttttttcaaaatcaggacagttcttggttgctgcagtagggcaggaacctcgcctaggaaggtggggacgtattgctgatgttcgaaatggagtttttgtgcatcctttgaagcattcgtgatattgagcttgttgctcattgtccattttggctcatgctaaaaggaggaatagccttctctgtactttcttgtgaggtcaatatttatttttatgttggcaaaaattttgatctatcaattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="27251" stop="20377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26951" g_stop="26862" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26861" i_stop="25019" i_length="1843">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25018" g_stop="24796" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="313" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24655" g_stop="24480" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="489" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21864" g_stop="21799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="555" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21798" i_stop="20871" i_length="928">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20870" g_stop="20668" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="758" r_length="203" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E597549" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26951" e_stop="26862"/>
          <exon e_start="25018" e_stop="24796"/>
          <exon e_start="24655" e_stop="24480"/>
          <exon e_start="21864" e_stop="21799"/>
          <exon e_start="20870" e_stop="20668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATCAAAGTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTCTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAGGTAGTTCATGGCCTTTCATCTGCTTTCAGGAATTCTTTTTCCTAGCTATGTATCTGTGTAGCGAAAGTAACTCTGGTTGTTTCATAAGTATTCAATGATTTGTTTCCATATGAGGAATTTAAACGAAGATTCGCGCCTTGTTGACAAAGAAGTCCTTCTCATGACAGGTGTATTTTTCCAGTAAAAGGCATAATTAGTTGAGTTGTCATCCACCATGTCCTTCCTTAGTGCCTGAGGTCTGAGCATTATCCTGATCCAAGAGTTTTTGTTTTCAAAACTCCTTTCAAGATTCCTTGAAGCTTGCTCTAGCAGTATTACCGGGTCTCTGATGTCAGATAACTTCAATTTGAAAAGCGAATAGTAAAAATGTTAGATTGATGTATTTTAAAAAGAACATTATATTCTTGAATATTGAGTTTGAGGATGTCCAACTAAAAAGGAACTAAGGCATGTAAATTCGGTTAACCCTACTTTTAGGATTTGCAATTTGTCATATTTAAGTTGGTGAATCCTTTTTTTTATGAAGTTGTAAGAATAGCCAGACAAAACATTCTTGCTTCCTTACTCCTAGCTTCAATGGGATGTTAGAAAATCTTTATGAAGATTATATGTTGGTTATAGGGTGTGGAATGTGGAGGAATATCATGAAGGGATGGTTAGATTTTTATGAAATATGAGATTCCGAGTATGTCATAATACAGTATCATGTCAAAGGAGGCAGTAGTCCAGCAAATTAGGTGGACACAAGTGGCAGAGATGGTTTGGGATTTGAGATTCAGGAGGGGTTTCCAGAACAGGGAAGTGAATGAATTTTAGGGGTTGCTAGCTTTACTACATCAACACTGTGAGCGAGTTGAAAGACTCGATACAGTGAGATGGAAATTGGGGAACAAATGTGTGTTTTAAGTCAAGTCCTTGAGAAGCTTTTGGTGAGGGTGAAGGAGGCTTTTTCTGTCAAGTCAATTCGGATTCCTAAGGTGCTGAGGTAGGTGTGCTTTTTCTCATGGTTAGCTTCTGGGGTGGTTTTGAGGGTGGAAGTCTTTAAGAGAAGGAAGGTTGTGTGTATCAGCTGTGGTACTTATGCAAGGAGGCGGCGAAGTTGTAGATCATCTTCTACTATACTGCAGCGTAGCAATGAGGGTGGGATATGTTTAGTTGATTTGGTATACCTTGGGTGATGCCAAGGTCTGTGAAGACTGAAGAAACTGTTGTTTTGCTGGAAAGCTTGAAAAAGCTGGATAAAGAGCAGGACATGGAATGTTGCCCTCTGGCTTTGATGTGGGTCATTTGGAGATGGCCTTTTGATTTATGAAATGAAACTGTTTTACCTGATAAAAAATGGTGTTGCTGAGCCATTTCTTCTGAGACTCTTGTGTAGTTGTGCTACTAAGGTTGTAGAATAGCGAAAGAAGTACTCTTGCTTGCTTGCTCCCAGATTCTATGGGATGTTAGAAAATCTTTAGAAAGATTATATGTTCAGGTTATGGGTGTGGCTGATCTATTCTTCTGAGAGTTGTCTTTTGCTACTATGAAGTTGCCTTGGGGATCTATTTTTCTGTTTTAAACACGATTACTTAATTTCTTTTTAGTGTATTATGGTTCACCACTGTGGTCATCATAGATATATCCTTGAAGTTCCATAAGCGAAAGTTAACTTGAGAGGGTTCTATGACTAGATTCCCCTCGCAAGGTTCTTTCTTGAATTAATAAGAACAAATCTTGAAGTGTCTTTGTTTACAAGTTAAATTCTTTTTACAATTTTTACTTTTCTAATGCATCCACAGATAGTTCTGACTCTTGATGATTTTCGTTACCACTTTGCCTCCCTCTATCCTGCCAATAGGTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGGGTAAGCTTTCATTTTGTGTTTTTCTGTTATCTCTCTCCTATGATAGAATTCTTTTAGTTGTATTTTCAATATCGATATTTTGCTTCAATATGAATTCTTTCACCAAAAGTTAATTGAAAATCTAAATGTGTTTCTTGCAGAAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTGGTAAGGAATCTATCAGTGTGTACCCATATGTTTTGTTGGAACTTCTTTGGATTTAGTTTGGTAAACTAGGAGTCTGTGACTTAATTATACCCAGGAGTAGAGGGGATATTGTGGGTGAGGTGTACTGGATTTTGTGGCTCACATAACATCTGCTAGTATTACAAAGGCGGAAAATATTGTGTTATAAAGGCATGATGGGCTACCAACACTTTACAGGTCTAGTGACATGTAAACCCCACAACATTATGTTTCGACTCAATAGAAAAATGATAACTCTGCAGGGGTTTTAAGTTGGCTGTAAGAATGCAGAACTGGTATGAGTTTAGACTGTTCAGTATTTTATTCAAATCTATGGCTGTTCGTCCAAGCATGCCGAAAATGGGCAAGTCGAAATGTGCTGCCAATTCTTGTTCTTCTTCTCTTTTTTCCAAGCAAGTGCCAACTAAAACAAAATTCTGCCATTCCCAACATAGTTCATCTGAATATCAGATTAGTTTTATCAGTCCAATCACACTGAAGCTTATTCTGGAAAAAAATGAAGAGCTATTAACAAGATCATTTTTTAAAAGGTATTGTTAATGTTCAATTAGCACTAAGAAAGTGCAGATCTGTACTGGTATACAAGGCAAAGAGCATAGTTAGTCAATTACCATTTCTTTTCTTTTTTTTTCACCAAAAGAGAAAAACATGTATGCAATTTAACTTGATCTTCTGGATAGGATTGACTCTGCCTTTAGTATCCTTGCATCCCTTTCTTTCTGCTATACATGCAGGGATTGCGTTCCACCACCATTTGTTCTGCCTCTTTGAATTCCTTTGCTGCACCAGCATCTTAGAATGTCCATTGGTATCCCTAGGTATCATCCATTTTAGACCCACCATATATAAGAAAAGCTGCCAGGATATTTTCTAAAAAATTATGCCATGGTTGGTCTGTTATTGGACAATGAAGGAATAAATGGCTAACTGTTTCTGGGTTCCTCCGACAGAAAAATTCACCCAGAACACAGCTGAAAACCACTTTTCTGCCAATTTTCTTGTGTCAAGCACGATTCTTTCTCCACCAATCAGGAGAAGCATGCAAATTTCATTTGTATATCCACTTCCCAGATCTGTTTCCATGGCCAACATACAACATAGTGACTGTTGCACACACCTGTAGTGAGACAAGTGTATTATGATTTTACTGGGATATTGAATTGACATAGTCTCCTTTCCCTGCCAAAAAATGTGACAGTATATCAATTCTATCCACAATCTCCCTAATTCTCCCTAACTATCACAAAGGGGTTGACCTAGATATTAAAGATCTGGAGTGGAAAAAGAAGAAGAGATGACTGTTTCAAAACAAGAGAAAAAGAGCTGGAGTAACAGCCTTAGGATCAAGAATAAAATCTCAGCAGAGGTCAGATTTGGTGAATCATCCCATTCTACAAGTCTTGGTTGGATTAGTTGAGGTGCAAGCACAAGGTTGTTTGGAGAAACATTTTCTGAAAAAGGGGTCTCTTACTATCATCTCCTTTGTAATACAGTCTGACCTTTTTTTATCAGCAAACAAGACAAATCCGTGAGTTTAAAGTAAAGTATTCAACACTTATATTCTTAACTCATTGGCATTAGCACTGGTTTTAAACTAAAGTTCCCTCTGGATATGTAGAACAAATAGAGCTTTTAAAAGGTAACTGACTTCAGCAGCTGTCAACAATGTTTTTTTTTTTTTTTTTATGATAAGGAAAACCCTCAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCCCCGCTCCTATGTAATAGCTCGCAAACCACATAGGAGAGGTAACCCGTACTAGGCAAGCCTGGTGCGACGAGCTCAACCCAGAAGGCAAACCCCTTGCTTTTGTTGACAAGGGGTTTCGAACTTGAGAGTTGAGACCTCCAACATGGAAGTCTCAAGCTCGAAACACTGGGCCACCCCGAAGGGTCACAATGTTGTTTGTAGATTGCCTAGTTAGTTTGCATTATCTATGTTCAAGTTGAGTTCTTTGACATCTTAAATCAAAGTCAATCTTCCAGTTAGTTGTTTGATGTGAATATAAAGTAACCCTTTATCTTACAATGAATTTCTTAAGCAGTTAACCATATATGAACTCTGCTAAACGTTACAAGTTCCCCCACCCCCACATCGTATGTCGGAAAAGGATATATCCTCACCATAGGAATAAAGGATTGCGGTACTCTACCTTTTGGGTTACCCTTGTATAGTGCCAGCCTTTGGTCATGCTTGTGAATGAAAATACTTTTACTTGATTAAAAAAAGAATGAAGGTCTGCATTCTTGAAGATTTCTTAATAGCAAGATATTTTTTTACCTATCAATAGAAACAAAAAAAGTTTAACGTTCTTGCTTATCACGGTTGTTCATGCACTTAATAGTAAACATATATTGGCGTGTCTTTATCCTTGCTCACTGTTCTTGATGCTCAATGAAATTGGCAAATGAGATTAAGCGTGCTCAAGTCATTGGGCTTTATTATAAGCAATATTTCCGGGGCTATTTGAATGCTGCTTGTGCCTTGTAGACTAATGTTGCTTCTTTAGAACAATGCAATGCTGATATGTTCATTGTTTTAATGCAGGCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAGGTGAATGGTTCTATCTCTATTTTTATGTTTCAATGTTTTCCAACTTTGCAGAACAGATCCAAAAGATTTAATTTCTTCCATATTTGTTTGAATTGATGATCCATCTTCTGGATACAATTGTATAATACATCACTCAACAATTTTTTGCTTGGCCAATTCTTTTTGACTGTGATCAGTGTCCTCTTAGAACTATCGGTATTTGAGATGACAAGTTAATTCTTTTATTGACGGATTAGAATTTTTTTTTGGGATGATTAAGTTATAGTTTCTTAGTATGATTTCCTGTCTTTGCCGTTCCTTGTTTGGACGTTTTCAGTAAAAGTCTTAATTCTTCTTCGTCCTTCAAAGAACCAAATCTTTTTCCTTTTTTAGTTTTTCACGAAGTTATCATTTCTTCTGCTGTGTTCTATCCTTGAGTATGTTCAAAAGGTTTGCTAACATGTGCCTACGTGAAACTTGAAATTTGATTATTATGATGGTAGCAAGATTCCCTCCCTTGTTTGCACAAAGATTATTTAGAACTTCTTAGGGTATGGGGAACAGAGTGTGGAAATGATAAGAACATTTTGAGTTGGTTGCAGAAAGCTAGCATAGATATATGGCACATTTTTGGAGTTGAAAGTGACTACTTTTTCTCCCTTGTAGATGAAAGAACATTTAGTTCCATATCCAAAAAGCTTCTTAGATATAGGCGTAACTGTATCTGTGGACCAAGACTCGTCTGGGTAGAAAATACTATGTTTTGAGTCAGACTTGGGTTATTGATCTGAGTACCTTATTTTGTAATGAACATGGTTTCCTGATGATGTGCAAAATATCATCCAATATTCTCTAGCACAGGGATTCATTGAATTCACACCTGAAGCATCTTTAATAGTCCATATATTGCTATTTTATCTCATGCACCATCATCTGCTCTGATATGCAGGAACCTCGCCTAGGAAGGTGGGGGCGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATACTGAGCTTGTTGGTCATTGTCCACTTCGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGCAAAAATTTTGATATATTTTATTCGC</genome_strand>
        <mrna_strand>GGTCATCAAAGTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTTTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG............................................................................................................................................AAAATGGCACCCTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAACTGTGGACAATTGAAAATGAATCAAAAGGCATCCGGCCATTGTTTGAGCTCCCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTCGCCTAGGAAGGTGGGGACGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATATTGAGCTTGTTGCTCATTGTCCATTTTGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGCAAAAATTTTGATCTATCAATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594814" ref_strand="+" ref_description="SGN-E594814 [38074]">
      <seq>tcaaaattgatagatcaaaatttttgccaacataaaaataaatattgacctcacaagaaagtacagagaaggctattcctccttttagcatgagccaaaatggacaatgagcaacaagctcaatatcacgaatgcttcaaaggatgcacaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="20377" stop="21124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20668" g_stop="20824" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E594814" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20668" e_stop="20824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATAAAATATATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCGAAGTGGACAATGACCAACAAGCTCAGTATCACGAATGCTTCAAAGGATGCACAAAAACTC</genome_strand>
        <mrna_strand>TCAAAATTGATAGATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCAAAATGGACAATGAGCAACAAGCTCAATATCACGAATGCTTCAAAGGATGCACAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432608" ref_strand="+" ref_description="SGN-E432608 [STM-57-E10]">
      <seq>gtgaagttctaaccattgattctttgaggaaagaaagggttttgacagttggacgagaccgaaccatgcacttatggaaggttccagaggaatctcaattgatatttcgtgctccagcaacttcccttgaatgctgttgtttcatcaataatgatgagtttctatctggttctgatgatggaagtattgagcactggaacgtaacaaggaagaagcctgtccacattgtaaaaaatgcacatgcttcattgcaatctgtgggaattgaacagagcaatggggccctatcaaatggccacatggaaaatggcacccttaatcctcagtgtcattcctcatcagcactctcttgggttagtgcgctgacagtctgcagaaatagtgatcttgcagcatcaggagctggcaacgggtccgttcaactgtggacaattgaaaatgaatcaaaaggcatccggccattgtttgagctcccagtggctggatttataaattccttagttttttcaaaatcaggacagttcttggttgctgcagtagggcaggaacctcacctaggaaggtggggacgtattgctgatgttcgaaatggagtttttgtgcatcctttgaagcattcgtgatattgagcttgntgctcattgtccattttggctcatgctaaaaggagaatagccttctctgtactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="27241" stop="20424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26941" g_stop="26862" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26861" i_stop="25019" i_length="1843">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25018" g_stop="24796" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="303" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24655" g_stop="24480" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="479" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21864" g_stop="21799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="545" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21798" i_stop="20871" i_length="928">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20870" g_stop="20724" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="691" r_length="146" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E432608" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26941" e_stop="26862"/>
          <exon e_start="25018" e_stop="24796"/>
          <exon e_start="24655" e_stop="24480"/>
          <exon e_start="21864" e_stop="21799"/>
          <exon e_start="20870" e_stop="20724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTCTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAGGTAGTTCATGGCCTTTCATCTGCTTTCAGGAATTCTTTTTCCTAGCTATGTATCTGTGTAGCGAAAGTAACTCTGGTTGTTTCATAAGTATTCAATGATTTGTTTCCATATGAGGAATTTAAACGAAGATTCGCGCCTTGTTGACAAAGAAGTCCTTCTCATGACAGGTGTATTTTTCCAGTAAAAGGCATAATTAGTTGAGTTGTCATCCACCATGTCCTTCCTTAGTGCCTGAGGTCTGAGCATTATCCTGATCCAAGAGTTTTTGTTTTCAAAACTCCTTTCAAGATTCCTTGAAGCTTGCTCTAGCAGTATTACCGGGTCTCTGATGTCAGATAACTTCAATTTGAAAAGCGAATAGTAAAAATGTTAGATTGATGTATTTTAAAAAGAACATTATATTCTTGAATATTGAGTTTGAGGATGTCCAACTAAAAAGGAACTAAGGCATGTAAATTCGGTTAACCCTACTTTTAGGATTTGCAATTTGTCATATTTAAGTTGGTGAATCCTTTTTTTTATGAAGTTGTAAGAATAGCCAGACAAAACATTCTTGCTTCCTTACTCCTAGCTTCAATGGGATGTTAGAAAATCTTTATGAAGATTATATGTTGGTTATAGGGTGTGGAATGTGGAGGAATATCATGAAGGGATGGTTAGATTTTTATGAAATATGAGATTCCGAGTATGTCATAATACAGTATCATGTCAAAGGAGGCAGTAGTCCAGCAAATTAGGTGGACACAAGTGGCAGAGATGGTTTGGGATTTGAGATTCAGGAGGGGTTTCCAGAACAGGGAAGTGAATGAATTTTAGGGGTTGCTAGCTTTACTACATCAACACTGTGAGCGAGTTGAAAGACTCGATACAGTGAGATGGAAATTGGGGAACAAATGTGTGTTTTAAGTCAAGTCCTTGAGAAGCTTTTGGTGAGGGTGAAGGAGGCTTTTTCTGTCAAGTCAATTCGGATTCCTAAGGTGCTGAGGTAGGTGTGCTTTTTCTCATGGTTAGCTTCTGGGGTGGTTTTGAGGGTGGAAGTCTTTAAGAGAAGGAAGGTTGTGTGTATCAGCTGTGGTACTTATGCAAGGAGGCGGCGAAGTTGTAGATCATCTTCTACTATACTGCAGCGTAGCAATGAGGGTGGGATATGTTTAGTTGATTTGGTATACCTTGGGTGATGCCAAGGTCTGTGAAGACTGAAGAAACTGTTGTTTTGCTGGAAAGCTTGAAAAAGCTGGATAAAGAGCAGGACATGGAATGTTGCCCTCTGGCTTTGATGTGGGTCATTTGGAGATGGCCTTTTGATTTATGAAATGAAACTGTTTTACCTGATAAAAAATGGTGTTGCTGAGCCATTTCTTCTGAGACTCTTGTGTAGTTGTGCTACTAAGGTTGTAGAATAGCGAAAGAAGTACTCTTGCTTGCTTGCTCCCAGATTCTATGGGATGTTAGAAAATCTTTAGAAAGATTATATGTTCAGGTTATGGGTGTGGCTGATCTATTCTTCTGAGAGTTGTCTTTTGCTACTATGAAGTTGCCTTGGGGATCTATTTTTCTGTTTTAAACACGATTACTTAATTTCTTTTTAGTGTATTATGGTTCACCACTGTGGTCATCATAGATATATCCTTGAAGTTCCATAAGCGAAAGTTAACTTGAGAGGGTTCTATGACTAGATTCCCCTCGCAAGGTTCTTTCTTGAATTAATAAGAACAAATCTTGAAGTGTCTTTGTTTACAAGTTAAATTCTTTTTACAATTTTTACTTTTCTAATGCATCCACAGATAGTTCTGACTCTTGATGATTTTCGTTACCACTTTGCCTCCCTCTATCCTGCCAATAGGTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGGGTAAGCTTTCATTTTGTGTTTTTCTGTTATCTCTCTCCTATGATAGAATTCTTTTAGTTGTATTTTCAATATCGATATTTTGCTTCAATATGAATTCTTTCACCAAAAGTTAATTGAAAATCTAAATGTGTTTCTTGCAGAAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTGGTAAGGAATCTATCAGTGTGTACCCATATGTTTTGTTGGAACTTCTTTGGATTTAGTTTGGTAAACTAGGAGTCTGTGACTTAATTATACCCAGGAGTAGAGGGGATATTGTGGGTGAGGTGTACTGGATTTTGTGGCTCACATAACATCTGCTAGTATTACAAAGGCGGAAAATATTGTGTTATAAAGGCATGATGGGCTACCAACACTTTACAGGTCTAGTGACATGTAAACCCCACAACATTATGTTTCGACTCAATAGAAAAATGATAACTCTGCAGGGGTTTTAAGTTGGCTGTAAGAATGCAGAACTGGTATGAGTTTAGACTGTTCAGTATTTTATTCAAATCTATGGCTGTTCGTCCAAGCATGCCGAAAATGGGCAAGTCGAAATGTGCTGCCAATTCTTGTTCTTCTTCTCTTTTTTCCAAGCAAGTGCCAACTAAAACAAAATTCTGCCATTCCCAACATAGTTCATCTGAATATCAGATTAGTTTTATCAGTCCAATCACACTGAAGCTTATTCTGGAAAAAAATGAAGAGCTATTAACAAGATCATTTTTTAAAAGGTATTGTTAATGTTCAATTAGCACTAAGAAAGTGCAGATCTGTACTGGTATACAAGGCAAAGAGCATAGTTAGTCAATTACCATTTCTTTTCTTTTTTTTTCACCAAAAGAGAAAAACATGTATGCAATTTAACTTGATCTTCTGGATAGGATTGACTCTGCCTTTAGTATCCTTGCATCCCTTTCTTTCTGCTATACATGCAGGGATTGCGTTCCACCACCATTTGTTCTGCCTCTTTGAATTCCTTTGCTGCACCAGCATCTTAGAATGTCCATTGGTATCCCTAGGTATCATCCATTTTAGACCCACCATATATAAGAAAAGCTGCCAGGATATTTTCTAAAAAATTATGCCATGGTTGGTCTGTTATTGGACAATGAAGGAATAAATGGCTAACTGTTTCTGGGTTCCTCCGACAGAAAAATTCACCCAGAACACAGCTGAAAACCACTTTTCTGCCAATTTTCTTGTGTCAAGCACGATTCTTTCTCCACCAATCAGGAGAAGCATGCAAATTTCATTTGTATATCCACTTCCCAGATCTGTTTCCATGGCCAACATACAACATAGTGACTGTTGCACACACCTGTAGTGAGACAAGTGTATTATGATTTTACTGGGATATTGAATTGACATAGTCTCCTTTCCCTGCCAAAAAATGTGACAGTATATCAATTCTATCCACAATCTCCCTAATTCTCCCTAACTATCACAAAGGGGTTGACCTAGATATTAAAGATCTGGAGTGGAAAAAGAAGAAGAGATGACTGTTTCAAAACAAGAGAAAAAGAGCTGGAGTAACAGCCTTAGGATCAAGAATAAAATCTCAGCAGAGGTCAGATTTGGTGAATCATCCCATTCTACAAGTCTTGGTTGGATTAGTTGAGGTGCAAGCACAAGGTTGTTTGGAGAAACATTTTCTGAAAAAGGGGTCTCTTACTATCATCTCCTTTGTAATACAGTCTGACCTTTTTTTATCAGCAAACAAGACAAATCCGTGAGTTTAAAGTAAAGTATTCAACACTTATATTCTTAACTCATTGGCATTAGCACTGGTTTTAAACTAAAGTTCCCTCTGGATATGTAGAACAAATAGAGCTTTTAAAAGGTAACTGACTTCAGCAGCTGTCAACAATGTTTTTTTTTTTTTTTTTATGATAAGGAAAACCCTCAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCCCCGCTCCTATGTAATAGCTCGCAAACCACATAGGAGAGGTAACCCGTACTAGGCAAGCCTGGTGCGACGAGCTCAACCCAGAAGGCAAACCCCTTGCTTTTGTTGACAAGGGGTTTCGAACTTGAGAGTTGAGACCTCCAACATGGAAGTCTCAAGCTCGAAACACTGGGCCACCCCGAAGGGTCACAATGTTGTTTGTAGATTGCCTAGTTAGTTTGCATTATCTATGTTCAAGTTGAGTTCTTTGACATCTTAAATCAAAGTCAATCTTCCAGTTAGTTGTTTGATGTGAATATAAAGTAACCCTTTATCTTACAATGAATTTCTTAAGCAGTTAACCATATATGAACTCTGCTAAACGTTACAAGTTCCCCCACCCCCACATCGTATGTCGGAAAAGGATATATCCTCACCATAGGAATAAAGGATTGCGGTACTCTACCTTTTGGGTTACCCTTGTATAGTGCCAGCCTTTGGTCATGCTTGTGAATGAAAATACTTTTACTTGATTAAAAAAAGAATGAAGGTCTGCATTCTTGAAGATTTCTTAATAGCAAGATATTTTTTTACCTATCAATAGAAACAAAAAAAGTTTAACGTTCTTGCTTATCACGGTTGTTCATGCACTTAATAGTAAACATATATTGGCGTGTCTTTATCCTTGCTCACTGTTCTTGATGCTCAATGAAATTGGCAAATGAGATTAAGCGTGCTCAAGTCATTGGGCTTTATTATAAGCAATATTTCCGGGGCTATTTGAATGCTGCTTGTGCCTTGTAGACTAATGTTGCTTCTTTAGAACAATGCAATGCTGATATGTTCATTGTTTTAATGCAGGCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAGGTGAATGGTTCTATCTCTATTTTTATGTTTCAATGTTTTCCAACTTTGCAGAACAGATCCAAAAGATTTAATTTCTTCCATATTTGTTTGAATTGATGATCCATCTTCTGGATACAATTGTATAATACATCACTCAACAATTTTTTGCTTGGCCAATTCTTTTTGACTGTGATCAGTGTCCTCTTAGAACTATCGGTATTTGAGATGACAAGTTAATTCTTTTATTGACGGATTAGAATTTTTTTTTGGGATGATTAAGTTATAGTTTCTTAGTATGATTTCCTGTCTTTGCCGTTCCTTGTTTGGACGTTTTCAGTAAAAGTCTTAATTCTTCTTCGTCCTTCAAAGAACCAAATCTTTTTCCTTTTTTAGTTTTTCACGAAGTTATCATTTCTTCTGCTGTGTTCTATCCTTGAGTATGTTCAAAAGGTTTGCTAACATGTGCCTACGTGAAACTTGAAATTTGATTATTATGATGGTAGCAAGATTCCCTCCCTTGTTTGCACAAAGATTATTTAGAACTTCTTAGGGTATGGGGAACAGAGTGTGGAAATGATAAGAACATTTTGAGTTGGTTGCAGAAAGCTAGCATAGATATATGGCACATTTTTGGAGTTGAAAGTGACTACTTTTTCTCCCTTGTAGATGAAAGAACATTTAGTTCCATATCCAAAAAGCTTCTTAGATATAGGCGTAACTGTATCTGTGGACCAAGACTCGTCTGGGTAGAAAATACTATGTTTTGAGTCAGACTTGGGTTATTGATCTGAGTACCTTATTTTGTAATGAACATGGTTTCCTGATGATGTGCAAAATATCATCCAATATTCTCTAGCACAGGGATTCATTGAATTCACACCTGAAGCATCTTTAATAGTCCATATATTGCTATTTTATCTCATGCACCATCATCTGCTCTGATATGCAGGAACCTCGCCTAGGAAGGTGGGGGCGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATACTGAGCTTGTTGGTCATTGTCCACTTCGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTC</genome_strand>
        <mrna_strand>GTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTTTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCTGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG............................................................................................................................................AAAATGGCACCCTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAACTGTGGACAATTGAAAATGAATCAAAAGGCATCCGGCCATTGTTTGAGCTCCCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTCACCTAGGAAGGTGGGGACGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATATTGAGCTTGNTGCTCATTGTCCATTTTGGCTCATGCTAAAAGGA-GAATAGCCTTCTCTGTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402116" ref_strand="+" ref_description="SGN-E402116 [PPC-6-B17]">
      <seq>gtgaagttctaaccattgattctttgaggaaagaaagggttttgacagttggacgagaccgaaccatgcacttatggaaggttccagaggaatctcaattgatatttcgtgctccagcaacttcccttgaatgctgttgtttcatcaataatgatgagtttctatctggttctgatgatggaagtattgagcactggaacgtaacaaggaagaagcctgtccacattgtaaaaaatgcacatgcttcattgcaatctgtgggaattgaacagagcaatggggccctatcaaatggccacatggaaaatggcacccttaatcctcagtgtcattcctcatcagcactctcttgggttagtgcgctgacagtctgcagaaatagtgatcttgcagcatcaggagctggcaacgggtccgttcaactgtggacaattgaaaatgaatcaaaaggcatccggccattgtttgagctcccagtggctggatttataaattccttagttttttcaaaatcangacagttcttggttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="27241" stop="21509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26941" g_stop="26862" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26861" i_stop="25019" i_length="1843">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25018" g_stop="24796" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="303" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24655" g_stop="24480" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="479" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21864" g_stop="21809" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="535" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E402116" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26941" e_stop="26862"/>
          <exon e_start="25018" e_stop="24796"/>
          <exon e_start="24655" e_stop="24480"/>
          <exon e_start="21864" e_stop="21809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTCTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAGGTAGTTCATGGCCTTTCATCTGCTTTCAGGAATTCTTTTTCCTAGCTATGTATCTGTGTAGCGAAAGTAACTCTGGTTGTTTCATAAGTATTCAATGATTTGTTTCCATATGAGGAATTTAAACGAAGATTCGCGCCTTGTTGACAAAGAAGTCCTTCTCATGACAGGTGTATTTTTCCAGTAAAAGGCATAATTAGTTGAGTTGTCATCCACCATGTCCTTCCTTAGTGCCTGAGGTCTGAGCATTATCCTGATCCAAGAGTTTTTGTTTTCAAAACTCCTTTCAAGATTCCTTGAAGCTTGCTCTAGCAGTATTACCGGGTCTCTGATGTCAGATAACTTCAATTTGAAAAGCGAATAGTAAAAATGTTAGATTGATGTATTTTAAAAAGAACATTATATTCTTGAATATTGAGTTTGAGGATGTCCAACTAAAAAGGAACTAAGGCATGTAAATTCGGTTAACCCTACTTTTAGGATTTGCAATTTGTCATATTTAAGTTGGTGAATCCTTTTTTTTATGAAGTTGTAAGAATAGCCAGACAAAACATTCTTGCTTCCTTACTCCTAGCTTCAATGGGATGTTAGAAAATCTTTATGAAGATTATATGTTGGTTATAGGGTGTGGAATGTGGAGGAATATCATGAAGGGATGGTTAGATTTTTATGAAATATGAGATTCCGAGTATGTCATAATACAGTATCATGTCAAAGGAGGCAGTAGTCCAGCAAATTAGGTGGACACAAGTGGCAGAGATGGTTTGGGATTTGAGATTCAGGAGGGGTTTCCAGAACAGGGAAGTGAATGAATTTTAGGGGTTGCTAGCTTTACTACATCAACACTGTGAGCGAGTTGAAAGACTCGATACAGTGAGATGGAAATTGGGGAACAAATGTGTGTTTTAAGTCAAGTCCTTGAGAAGCTTTTGGTGAGGGTGAAGGAGGCTTTTTCTGTCAAGTCAATTCGGATTCCTAAGGTGCTGAGGTAGGTGTGCTTTTTCTCATGGTTAGCTTCTGGGGTGGTTTTGAGGGTGGAAGTCTTTAAGAGAAGGAAGGTTGTGTGTATCAGCTGTGGTACTTATGCAAGGAGGCGGCGAAGTTGTAGATCATCTTCTACTATACTGCAGCGTAGCAATGAGGGTGGGATATGTTTAGTTGATTTGGTATACCTTGGGTGATGCCAAGGTCTGTGAAGACTGAAGAAACTGTTGTTTTGCTGGAAAGCTTGAAAAAGCTGGATAAAGAGCAGGACATGGAATGTTGCCCTCTGGCTTTGATGTGGGTCATTTGGAGATGGCCTTTTGATTTATGAAATGAAACTGTTTTACCTGATAAAAAATGGTGTTGCTGAGCCATTTCTTCTGAGACTCTTGTGTAGTTGTGCTACTAAGGTTGTAGAATAGCGAAAGAAGTACTCTTGCTTGCTTGCTCCCAGATTCTATGGGATGTTAGAAAATCTTTAGAAAGATTATATGTTCAGGTTATGGGTGTGGCTGATCTATTCTTCTGAGAGTTGTCTTTTGCTACTATGAAGTTGCCTTGGGGATCTATTTTTCTGTTTTAAACACGATTACTTAATTTCTTTTTAGTGTATTATGGTTCACCACTGTGGTCATCATAGATATATCCTTGAAGTTCCATAAGCGAAAGTTAACTTGAGAGGGTTCTATGACTAGATTCCCCTCGCAAGGTTCTTTCTTGAATTAATAAGAACAAATCTTGAAGTGTCTTTGTTTACAAGTTAAATTCTTTTTACAATTTTTACTTTTCTAATGCATCCACAGATAGTTCTGACTCTTGATGATTTTCGTTACCACTTTGCCTCCCTCTATCCTGCCAATAGGTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGGGTAAGCTTTCATTTTGTGTTTTTCTGTTATCTCTCTCCTATGATAGAATTCTTTTAGTTGTATTTTCAATATCGATATTTTGCTTCAATATGAATTCTTTCACCAAAAGTTAATTGAAAATCTAAATGTGTTTCTTGCAGAAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTGGTAAGGAATCTATCAGTGTGTACCCATATGTTTTGTTGGAACTTCTTTGGATTTAGTTTGGTAAACTAGGAGTCTGTGACTTAATTATACCCAGGAGTAGAGGGGATATTGTGGGTGAGGTGTACTGGATTTTGTGGCTCACATAACATCTGCTAGTATTACAAAGGCGGAAAATATTGTGTTATAAAGGCATGATGGGCTACCAACACTTTACAGGTCTAGTGACATGTAAACCCCACAACATTATGTTTCGACTCAATAGAAAAATGATAACTCTGCAGGGGTTTTAAGTTGGCTGTAAGAATGCAGAACTGGTATGAGTTTAGACTGTTCAGTATTTTATTCAAATCTATGGCTGTTCGTCCAAGCATGCCGAAAATGGGCAAGTCGAAATGTGCTGCCAATTCTTGTTCTTCTTCTCTTTTTTCCAAGCAAGTGCCAACTAAAACAAAATTCTGCCATTCCCAACATAGTTCATCTGAATATCAGATTAGTTTTATCAGTCCAATCACACTGAAGCTTATTCTGGAAAAAAATGAAGAGCTATTAACAAGATCATTTTTTAAAAGGTATTGTTAATGTTCAATTAGCACTAAGAAAGTGCAGATCTGTACTGGTATACAAGGCAAAGAGCATAGTTAGTCAATTACCATTTCTTTTCTTTTTTTTTCACCAAAAGAGAAAAACATGTATGCAATTTAACTTGATCTTCTGGATAGGATTGACTCTGCCTTTAGTATCCTTGCATCCCTTTCTTTCTGCTATACATGCAGGGATTGCGTTCCACCACCATTTGTTCTGCCTCTTTGAATTCCTTTGCTGCACCAGCATCTTAGAATGTCCATTGGTATCCCTAGGTATCATCCATTTTAGACCCACCATATATAAGAAAAGCTGCCAGGATATTTTCTAAAAAATTATGCCATGGTTGGTCTGTTATTGGACAATGAAGGAATAAATGGCTAACTGTTTCTGGGTTCCTCCGACAGAAAAATTCACCCAGAACACAGCTGAAAACCACTTTTCTGCCAATTTTCTTGTGTCAAGCACGATTCTTTCTCCACCAATCAGGAGAAGCATGCAAATTTCATTTGTATATCCACTTCCCAGATCTGTTTCCATGGCCAACATACAACATAGTGACTGTTGCACACACCTGTAGTGAGACAAGTGTATTATGATTTTACTGGGATATTGAATTGACATAGTCTCCTTTCCCTGCCAAAAAATGTGACAGTATATCAATTCTATCCACAATCTCCCTAATTCTCCCTAACTATCACAAAGGGGTTGACCTAGATATTAAAGATCTGGAGTGGAAAAAGAAGAAGAGATGACTGTTTCAAAACAAGAGAAAAAGAGCTGGAGTAACAGCCTTAGGATCAAGAATAAAATCTCAGCAGAGGTCAGATTTGGTGAATCATCCCATTCTACAAGTCTTGGTTGGATTAGTTGAGGTGCAAGCACAAGGTTGTTTGGAGAAACATTTTCTGAAAAAGGGGTCTCTTACTATCATCTCCTTTGTAATACAGTCTGACCTTTTTTTATCAGCAAACAAGACAAATCCGTGAGTTTAAAGTAAAGTATTCAACACTTATATTCTTAACTCATTGGCATTAGCACTGGTTTTAAACTAAAGTTCCCTCTGGATATGTAGAACAAATAGAGCTTTTAAAAGGTAACTGACTTCAGCAGCTGTCAACAATGTTTTTTTTTTTTTTTTTATGATAAGGAAAACCCTCAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCCCCGCTCCTATGTAATAGCTCGCAAACCACATAGGAGAGGTAACCCGTACTAGGCAAGCCTGGTGCGACGAGCTCAACCCAGAAGGCAAACCCCTTGCTTTTGTTGACAAGGGGTTTCGAACTTGAGAGTTGAGACCTCCAACATGGAAGTCTCAAGCTCGAAACACTGGGCCACCCCGAAGGGTCACAATGTTGTTTGTAGATTGCCTAGTTAGTTTGCATTATCTATGTTCAAGTTGAGTTCTTTGACATCTTAAATCAAAGTCAATCTTCCAGTTAGTTGTTTGATGTGAATATAAAGTAACCCTTTATCTTACAATGAATTTCTTAAGCAGTTAACCATATATGAACTCTGCTAAACGTTACAAGTTCCCCCACCCCCACATCGTATGTCGGAAAAGGATATATCCTCACCATAGGAATAAAGGATTGCGGTACTCTACCTTTTGGGTTACCCTTGTATAGTGCCAGCCTTTGGTCATGCTTGTGAATGAAAATACTTTTACTTGATTAAAAAAAGAATGAAGGTCTGCATTCTTGAAGATTTCTTAATAGCAAGATATTTTTTTACCTATCAATAGAAACAAAAAAAGTTTAACGTTCTTGCTTATCACGGTTGTTCATGCACTTAATAGTAAACATATATTGGCGTGTCTTTATCCTTGCTCACTGTTCTTGATGCTCAATGAAATTGGCAAATGAGATTAAGCGTGCTCAAGTCATTGGGCTTTATTATAAGCAATATTTCCGGGGCTATTTGAATGCTGCTTGTGCCTTGTAGACTAATGTTGCTTCTTTAGAACAATGCAATGCTGATATGTTCATTGTTTTAATGCAGGCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGC</genome_strand>
        <mrna_strand>GTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTTTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCTGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG............................................................................................................................................AAAATGGCACCCTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAACTGTGGACAATTGAAAATGAATCAAAAGGCATCCGGCCATTGTTTGAGCTCCCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCANGACAGTTCTTGGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571678" ref_strand="+" ref_description="SGN-E571678 [15627]">
      <seq>aagcaatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgttccagaaaagctattgcttccaggattcaaaagcctaccgagggatttcaccttttagtgaaacatcgacagtctgtaactgctgtgactttatctgatgatgacttaaagggattttcatcttctaaagatggtactattgttagctgggacgtggacagtggaaagacagaaaagtatgcatggcctactgatgaagctttgaagtcacatggtgcaaaggagccacaaggtcgagcaacaaaacatagtaagcatgttttacgctttggctgtcagctctgatggacgctatttggcaagtggaggcttggaccgtcacattcatttgtgggatgtccgaacacggcagcatattaaggcattccctggtcataagggacctgtttcatgtttgacattcagacaaggatcttctgaactgttttcaggggtcgtttgatcgatccatcaagatatggaatgtcgaagatagagcttatgtaaatactttatttggtcatcaaagtgaagttctaaccattgattctttgaggaaagaaagggttttgacagttggacgagaccgaaccatgcacttatggaaggttccagagaatctcaattgatatttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="28969" stop="24689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28669" g_stop="28582" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27375" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="426" r_length="338" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27374" i_stop="27087" i_length="288">
            <donor d_prob="0.784" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27086" g_stop="26862" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="652" r_length="226" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26861" i_stop="25019" i_length="1843">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25018" g_stop="24989" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="681" r_length="29" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E571678" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28669" e_stop="28582"/>
          <exon e_start="27711" e_stop="27375"/>
          <exon e_start="27086" e_stop="26862"/>
          <exon e_start="25018" e_stop="24989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTCTGAAGTCACATGGTGCAAAGGACCCACAAGGTCGAGCAACAAAACATAGTAAGAATGTTTTA-GCTTTGGCTGTCAGCTCTGATGGACGCTATTTGGCAAGTGGAGGCTTAGATCGTCACGTTCATTTGTGGGACATCCGAACACGGCAGCATATTAAGGTACCATGATCAACATTAGATTCTGACTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTTATTTCAAATTAAATCTGTTGAGCTAGATGATAGCTTGGAACTCGTGTTGGTCAGAGTTCTCTTTGCAAGTGCAACAAGCACTCAAGTGACTTAGTTGGCATTTCCATTGCAAGTTCAATTTTTTTTGGAGCTATTTGCACTCTTCAAATATGTAAGAGGCTAATTCATTGATTCTTTATTTAAACTCTTCATTGCTACTCTAATATGAAGATGATTCTTTTACAGGCATTCCCTGGTCATAAGGGACCTGTTTCATGTTTGACATTCAGACAAGGATCTTCTGAACTGTTTTC-GGGGTCGTTTGATCGATCCATCAAGATATGGAATGTGGAAGATAGAGCTTATGTAAATACTTTATTTGGTCATCAAAGTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTCTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAGGTAGTTCATGGCCTTTCATCTGCTTTCAGGAATTCTTTTTCCTAGCTATGTATCTGTGTAGCGAAAGTAACTCTGGTTGTTTCATAAGTATTCAATGATTTGTTTCCATATGAGGAATTTAAACGAAGATTCGCGCCTTGTTGACAAAGAAGTCCTTCTCATGACAGGTGTATTTTTCCAGTAAAAGGCATAATTAGTTGAGTTGTCATCCACCATGTCCTTCCTTAGTGCCTGAGGTCTGAGCATTATCCTGATCCAAGAGTTTTTGTTTTCAAAACTCCTTTCAAGATTCCTTGAAGCTTGCTCTAGCAGTATTACCGGGTCTCTGATGTCAGATAACTTCAATTTGAAAAGCGAATAGTAAAAATGTTAGATTGATGTATTTTAAAAAGAACATTATATTCTTGAATATTGAGTTTGAGGATGTCCAACTAAAAAGGAACTAAGGCATGTAAATTCGGTTAACCCTACTTTTAGGATTTGCAATTTGTCATATTTAAGTTGGTGAATCCTTTTTTTTATGAAGTTGTAAGAATAGCCAGACAAAACATTCTTGCTTCCTTACTCCTAGCTTCAATGGGATGTTAGAAAATCTTTATGAAGATTATATGTTGGTTATAGGGTGTGGAATGTGGAGGAATATCATGAAGGGATGGTTAGATTTTTATGAAATATGAGATTCCGAGTATGTCATAATACAGTATCATGTCAAAGGAGGCAGTAGTCCAGCAAATTAGGTGGACACAAGTGGCAGAGATGGTTTGGGATTTGAGATTCAGGAGGGGTTTCCAGAACAGGGAAGTGAATGAATTTTAGGGGTTGCTAGCTTTACTACATCAACACTGTGAGCGAGTTGAAAGACTCGATACAGTGAGATGGAAATTGGGGAACAAATGTGTGTTTTAAGTCAAGTCCTTGAGAAGCTTTTGGTGAGGGTGAAGGAGGCTTTTTCTGTCAAGTCAATTCGGATTCCTAAGGTGCTGAGGTAGGTGTGCTTTTTCTCATGGTTAGCTTCTGGGGTGGTTTTGAGGGTGGAAGTCTTTAAGAGAAGGAAGGTTGTGTGTATCAGCTGTGGTACTTATGCAAGGAGGCGGCGAAGTTGTAGATCATCTTCTACTATACTGCAGCGTAGCAATGAGGGTGGGATATGTTTAGTTGATTTGGTATACCTTGGGTGATGCCAAGGTCTGTGAAGACTGAAGAAACTGTTGTTTTGCTGGAAAGCTTGAAAAAGCTGGATAAAGAGCAGGACATGGAATGTTGCCCTCTGGCTTTGATGTGGGTCATTTGGAGATGGCCTTTTGATTTATGAAATGAAACTGTTTTACCTGATAAAAAATGGTGTTGCTGAGCCATTTCTTCTGAGACTCTTGTGTAGTTGTGCTACTAAGGTTGTAGAATAGCGAAAGAAGTACTCTTGCTTGCTTGCTCCCAGATTCTATGGGATGTTAGAAAATCTTTAGAAAGATTATATGTTCAGGTTATGGGTGTGGCTGATCTATTCTTCTGAGAGTTGTCTTTTGCTACTATGAAGTTGCCTTGGGGATCTATTTTTCTGTTTTAAACACGATTACTTAATTTCTTTTTAGTGTATTATGGTTCACCACTGTGGTCATCATAGATATATCCTTGAAGTTCCATAAGCGAAAGTTAACTTGAGAGGGTTCTATGACTAGATTCCCCTCGCAAGGTTCTTTCTTGAATTAATAAGAACAAATCTTGAAGTGTCTTTGTTTACAAGTTAAATTCTTTTTACAATTTTTACTTTTCTAATGCATCCACAGATAGTTCTGACTCTTGATGATTTTCGTTACCACTTTGCCTCCCTCTATCCTGCCAATAGGTTCCAGAGGAATCTCAATTGATATTTCGT</genome_strand>
        <mrna_strand>AAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAGCCTACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCTGTAACTGCTGTGACTTTATCTGATGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGTACTATTGTTAGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTTTGAAGTCACATGGTGCAAAGGAGCCACAAGGTCGAGCAACAAAACATAGTAAGCATGTTTTACGCTTTGGCTGTCAGCTCTGATGGACGCTATTTGGCAAGTGGAGGCTTGGACCGTCACATTCATTTGTGGGATGTCCGAACACGGCAGCATATTAAG................................................................................................................................................................................................................................................................................................GCATTCCCTGGTCATAAGGGACCTGTTTCATGTTTGACATTCAGACAAGGATCTTCTGAACTGTTTTCAGGGGTCGTTTGATCGATCCATCAAGATATGGAATGTCGAAGATAGAGCTTATGTAAATACTTTATTTGGTCATCAAAGTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTTTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGA-GAATCTCAATTGATATTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438764" ref_strand="+" ref_description="SGN-E438764 [cSTA-9-D23]">
      <seq>caatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgttccagaaaagctattgcttccaggattcaaaagcctaccgagggatttcaccttttagtgaaacatcgacagtctgtaactgctgtgactttatctgatgatgacttaaagggattttcatcttctaaagatggtactattgttagctgggacgtggacagtggaaagacagaaaagtatgcatggcctactgatgaagctttgaagtcacatggtgcaaaggaaccacaaggtcgagcaacaaaacatagtaagcatgttttagctttggctgtcagctctgatggacgctatttggcaagtggaggcttggaccgtcacattcatttgtgggatgtccgaacacggcagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="28966" stop="27080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28666" g_stop="28582" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27380" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="417" r_length="332" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E438764" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28666" e_stop="28582"/>
          <exon e_start="27711" e_stop="27380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTCTGAAGTCACATGGTGCAAAGGACCCACAAGGTCGAGCAACAAAACATAGTAAGAATGTTTTAGCTTTGGCTGTCAGCTCTGATGGACGCTATTTGGCAAGTGGAGGCTTAGATCGTCACGTTCATTTGTGGGACATCCGAACACGGCAGCATA</genome_strand>
        <mrna_strand>CAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAGCCTACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCTGTAACTGCTGTGACTTTATCTGATGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGTACTATTGTTAGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTTTGAAGTCACATGGTGCAAAGGAACCACAAGGTCGAGCAACAAAACATAGTAAGCATGTTTTAGCTTTGGCTGTCAGCTCTGATGGACGCTATTTGGCAAGTGGAGGCTTGGACCGTCACATTCATTTGTGGGATGTCCGAACACGGCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466271" ref_strand="+" ref_description="SGN-E466271 [cPRO-23-P21]">
      <seq>ccctagtcactgcattactgttcctttgcttttatttcaatatcaatccaaatttgcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacacccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgacgacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggaggagacggcagctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtggagaggaatatgatagagaggagagggaagcaatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgttccagaaaagctattgcttccaggattcaaaagcctaccgagggatttcaccttttagtgaaacatcgacagtctgtaactgctgtgactttatctgatgatgacttaaagggattttcatcttctaaagatggtactattgttagctgggacgtggacagtggaaagacagaaaagtatgcatggcctactgatgaagctttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29440" stop="27227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29140" g_stop="28582" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27527" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="744" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E466271" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29140" e_stop="28582"/>
          <exon e_start="27711" e_stop="27527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTCTGAAGT</genome_strand>
        <mrna_strand>CCCTAGTCACTGCATTACTGTTCCTTTGCTTTTATTTCAATATCAATCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGACGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGGAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAGCCTACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCTGTAACTGCTGTGACTTTATCTGATGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGTACTATTGTTAGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604486" ref_strand="+" ref_description="SGN-E604486 [74622]">
      <seq>aaaaccctagtcactgcattactgttcctttgcttttatttcaatatcaatccaaatttgcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacacccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgacgacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggaggagacggcagctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtggagaggaatatgatagagaggagagggaagcaatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgttccagaaaagctattgcttccaggattcaaaagcctaccgagggatttcaccttttagtgaaacatcggacagtctgtaactgctgtgactttatctgatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29444" stop="27330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29144" g_stop="28582" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27630" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="646" r_length="83" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E604486" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29144" e_stop="28582"/>
          <exon e_start="27711" e_stop="27630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATC-GACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGAC</genome_strand>
        <mrna_strand>AAAACCCTAGTCACTGCATTACTGTTCCTTTGCTTTTATTTCAATATCAATCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGACGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGGAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAGCCTACCGAGGGATTTCACCTTTTAGTGAAACATCGGACAGTCTGTAACTGCTGTGACTTTATCTGATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415761" ref_strand="+" ref_description="SGN-E415761 [STM-21-L6]">
      <seq>taaaaccctagtcactacattactgttcctttgcctttatttcaatttcaatccaaattagcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacatccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggaggagacggcagctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtggagaggaatatgatagagaggagagggaagcaatgagagactcatggatggtagacatgttgcagaaggagcagatgganggcagtggtcgttccagaaaagctattgcttccaggattcaaaagcctaccgagggatttcaccttttagtgaaacatcgacagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29445" stop="27361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29145" g_stop="28582" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27711" g_stop="27660" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="616" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E415761" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29145" e_stop="28582"/>
          <exon e_start="27711" e_stop="27660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAGGTGTGTGATAAATATGGATTGTTATTTCATTTTACCTGGATTTACTCTTTTCTGGCCTGGATAGCTGTAATTGCTATTGCTTCCAGATGTATTTTAGTAATTCATGTAATTGCTGGATTTTTGGGTTCCCAAGGGGATGGTGGTGTGGTTAGGTATGTATGCAAGTAACAACTTAGAGGTCATTTGGTTTAGGGACGAGCTATGCAGGGGTTATATGTGGAGTGATTAGTAATGCAATGATAAAAATGTTTGGATTGTAATGTAGGGCATGTATAATGTAAAGATTATGCCTTTTTGAATGTTTAGTTTCATATATTACATATTACTAGTGTACAGTGTATAACTAAAATATTTGTTATACTTTTTTAACAAAATAAACATTTGCTTGTTATAATGTTGATTTTTAGGTGGAGATTCACCTCCTTAAATCCCAACCAAACATTGTATAATTTATACTAATTTTAGTGAGATTGTATGTCCTACAATCTAAACTAAATGGCCCATGTTTGAATCCCATGCACAAGCTGATCTAGACTCCATTATCACTGAGCGAATGAATTGAATCAGTTGATTATTTTCAGTGGTCAACCAAATTGAGTAGAAGCGCCATGAATAGCCCATCTTTGTTTCTGTTTTAATGTTAGAAGTGTTGTGCTTGCACATAGGCTATAGCTGAGGTTCTTTTGAGTTGAAAGTTGCTACTTCATTATCTACTATCTAGATAATCAAATAATTGGTACGTATGCTGTTGTGTTCCAGTAAAACCATGATAGGAGATATTGTTCCATTCTTGCAAGTGGTTAAATAAAAAAGGACATAGGTTTTACTGTTTTAGATAGTTATTGAGTTGTACCATTATTCATTCTCCAGGATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCC</genome_strand>
        <mrna_strand>TAAAACCCTAGTCACTACATTACTGTTCCTTTGCCTTTATTTCAATTTCAATCCAAATTAGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACATCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGGAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGANGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAAAAGCCTACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418048" ref_strand="+" ref_description="SGN-E418048 [STM-26-F8]">
      <seq>gttcctttgcctttatttcaatttcaatccaaattagcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacatccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggaggagacggcagctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtggagaggaatatgatagagaggagagggaagcaatgagagactcatggatggtagacatgttgcagaaggagcagatggagggcagtggtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29421" stop="28305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29121" g_stop="28605" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E418048" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29121" e_stop="28605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGT</genome_strand>
        <mrna_strand>GTTCCTTTGCCTTTATTTCAATTTCAATCCAAATTAGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACATCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGGAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437444" ref_strand="+" ref_description="SGN-E437444 [cSTA-3-D20]">
      <seq>taaaaccctagtcactacattactgttcctttgcctttatttcaatttcaatccaaattagcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacatccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggaggagacggcagctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaagagagagtggagaggaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29445" stop="28386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29145" g_stop="28686" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E437444" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29145" e_stop="28686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATAT</genome_strand>
        <mrna_strand>TAAAACCCTAGTCACTACATTACTGTTCCTTTGCCTTTATTTCAATTTCAATCCAAATTAGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACATCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGGAGAGGAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447595" ref_strand="+" ref_description="SGN-E447595 [cSTA-27-F23]">
      <seq>gttcctttgcctttatttcaatttcaatccaaattagcaactgattgtaacatatttctgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacatccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaataacaggaggaggaggaggagacggcatctgagaagagaaagaggctggcggagacatttttgcatagtatgagggagtcgaagaggaaggaagaggaagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29421" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29121" g_stop="28705" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E447595" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29121" e_stop="28705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAG</genome_strand>
        <mrna_strand>GTTCCTTTGCCTTTATTTCAATTTCAATCCAAATTAGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACATCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAATAACAGGAGGAGGAGGAGGAGACGGCATCTGAGAAGAGAAAGAGGCTGGCGGAGACATTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437445" ref_strand="+" ref_description="SGN-E437445 [cSTA-3-D22]">
      <seq>taaaaccctgggcactacattactggtcctttgcctctatttcaatttcaatccaaattagcaactgattgtaacatatttttgcaaaagttgtgaactttaagctcacaattgaatcatgaagaacctgaaaaagaagaaagcttcagctcaaaacatccagaagggtagtaagaagagattttcagttgaaagcgacccatttttcaatgaagacaacgacttgaaaaggcgaaagagatttggagatgatgaagatattgagagcagtgatgattcagaggacatttatgggtctgatgatgaaggagtggataggaatgagaggaaggatgaagaagaggaggaggaggatgagacggcatctgtgaagagaaagaggctggcggagacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29445" stop="28451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29145" g_stop="28750" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E437445" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29145" e_stop="28750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTT</genome_strand>
        <mrna_strand>TAAAACCCTGGGCACTACATTACTGGTCCTTTGCCTCTATTTCAATTTCAATCCAAATTAGCAACTGATTGTAACATATTTTTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACATCCAGAAGGGTAGTAAGAAGAGATTTTCAGTTGAAAGCGACCCATTTTTCAATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATTGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGAGGAAGGATGAAGAAGAGGAGGAGGAGGATGAGACGGCATCTGTGAAGAGAAAGAGGCTGGCGGAGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="29254" stop="30282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29563" g_stop="29982" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="450" r_length="421" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29563" e_stop="29982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTTTAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTATAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGACG-CTGGAAAATTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGTTTATTAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389948" ref_strand="+" ref_description="SGN-E389948 [TUS-4-O2]">
      <seq>acacattgagctatcatactgttgttttgagtccttcaaggtgcttgctaatcattatctagacgttacgtctcatgatgattactttcctgagattcatcgtttattaggggaaactaatataactccagctgatgttgctgagagtttgatgcccaagtcttctaaggaaaatgcagatacttgcttggagaggttagttaaagctattgaaacagcaaaggtggaagcaaaattgaaggctgaggaagaaaaggcagagaaggagaaggaagagaacgagaacgaaaagaaaaagaaagaagcagcagctgctgcagaagacgcgaaaagggctgatgatgtgaacgaaaatgggacgtcgatggagactaaggaaaagccagaaagtgatggtgctaaggaaaattgcaagtctgagatagtaatggactaatgatgatgttagtaaagggttagtaaagtttgatcatggaaatatttgatcaattaggtgttgcccatagaaccaggattcagatattttgaataattttgttgttgaacattgttgattttgttattcaagagatactatgatgatgtaagaagtggttgttgcataatacatagtgtagtatcttatctttttgtggtaacaaatatttacatcttagtaacttggtgatatatatcaatttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="48082" stop="49364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48382" g_stop="49064" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E389948" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48382" e_stop="49064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATTTACATCTTAGTAACTTGGTGATATATGTCAATTTCCT</genome_strand>
        <mrna_strand>ACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATCATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAAGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGGTAACAAATATTTACATCTTAGTAACTTGGTGATATATATCAATTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550379" ref_strand="+" ref_description="SGN-E550379 [TUS-5-O2](-)">
      <seq>acacattgagctatcatactgttgttttgagtccttcaaggtgcttgctaataattatctagacgttacgtctcatgatgattactttcctgagattcatcgtttattaggggaaactaatataactccagctgatgttgctgagagtttgatgcccaagtcttctaaggaaaatgcagatacttgcttggagaggttagttaaagctattgaaacagcaaaggtggaagcaaaattgaaggctgaggaagaaaaggcagagaaggagaaggaagagaacgagaacgaaaagaaaaagaaagaagcagcagctgctgcagaagacgcgaaaagggctgatgatgtgaacgaaaatgggacgtcgatggagactaaggaaaagccagaaagtgatggtgctaaggaaaattgcaagtctgagatagtaatggactaatgatgatgttagtaaagggttagtaaagtttgatcatggaaatatttgatcaattaggtgttgcccatagaaccaggattcagatattttgaataattttgttgttgaacattgttgattttgttattcaagagatactatgatgatgtaggaagtggttgttgcataatacatagtgtagtatcttatctttttgtgtaacaaaatattgacatcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="48082" stop="49337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48382" g_stop="49037" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E550379" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48382" e_stop="49037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATTTACATCTTAG</genome_strand>
        <mrna_strand>ACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATTGACATCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389689" ref_strand="+" ref_description="SGN-E389689 [TUS-4-O2](-)">
      <seq>acacattgagctatcatactgttgtttgagtcccttcaaggtgcttgctaataattatctagacgttacgtctcatgatgattactttcctgagattcatcgtttattaggggaaactaatataactccagctgatgttgctgagagtttgatgcccaagtcttctaaggaaaatgcagatacttgcttggagaggttagttaaagctattgaaacagcaaaggtggaagcaaaattgaaggctgaggaagaaaaggcagagaaggagaaggaagagaacgagaacgaaaagaaaaagaaagaagcagcagctgctgcagaagacgcgaaaagggctgatgatgtgaacgaaaatgggacgtcgatggagactaaggaaaagccagaaagtgatggtgctaaggaaaattgcaagtctgagatagtaatggactaatgatgatgttagtaaagggttagtaaagtttgatcatggaaatatttgatcaattaggtgttgcccatagaaccaggattcagatattttgaataattttgttgttgaacattgttgattttgttattcaagagatactatgatgatgtaggaagtggttgttgcataatacatagtgtagtatcttatctttttgtgtaacaaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="48082" stop="49327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48382" g_stop="49027" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E389689" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48382" e_stop="49027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTGAGCTATCATACTGTTGTTTTGAGT-CCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATT</genome_strand>
        <mrna_strand>ACACATTGAGCTATCATACTGTTG-TTTGAGTCCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233057" ref_strand="+" ref_description="SGN-E233057 [cLED-6-C18]">
      <seq>cacattgagctatcatactgttgttttgagtccttcaaggtgcttgctaataattatctagacgttacgtctcatgatgattactttcctgagattcatcgtttattaggggaaactaatataactccagctgatgttgctgagagtttgatgcccaagtcttctaaggaaaatgcagatacttgcttggagaggttagttaaagctattgaaacagcaaaggtggaagcaaaattgaaggctgaggaagaaaaggcagagaaggagaaggaagagaacgagaacgaaaagaaaaagaaagaagcagcagctgctgcagaagacgcgaaaagggctgatgatgtgaacgaaaatgggacgtcgatggagactaaggaaaagccagaaagtgatggtgctaaggaaaattgcaagtctgagatagtaatggactaatgatgatgttagtaaagggttagtaaagtttgatcatggaaatatttgatcaattaggtgttgcccatagaaccaggattcagatattttgaataatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="48083" stop="49217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="48917" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E233057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="48917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTT</genome_strand>
        <mrna_strand>CACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331673" ref_strand="+" ref_description="SGN-E331673 [cTOD-7-M10]">
      <seq>aaacatttcgcaggcatttgattgcatgtgattccatggaaaattcaaaatcagtgaacaaggaggacgtgattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49499" stop="53638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49799" g_stop="50187" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="511" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53443" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="526" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E331673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49799" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTTCGCAGGCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGT</genome_strand>
        <mrna_strand>AAACATTTCGCAGGCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551507" ref_strand="+" ref_description="SGN-E551507 [TUS-50-E6]">
      <seq>caagggcatttgattgcatgtgattccatggaaaattcaaaatcagtgaacaaggaggacgtgattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49508" stop="53838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49812" g_stop="50187" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="381" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="503" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53538" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="613" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E551507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49812" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCA</genome_strand>
        <mrna_strand>GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688382" ref_strand="+" ref_description="SGN-E688382 [t3_tus_50_e06]">
      <seq>caagggcatttgattgcatgtgattccatggaaaattcaaaatcagtgaacaaggaggacgtgattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49508" stop="53838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49812" g_stop="50187" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="381" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="503" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53538" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="613" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E688382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49812" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCA</genome_strand>
        <mrna_strand>GCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202595" ref_strand="+" ref_description="SGN-E202595 [cLEC-19-J15]">
      <seq>catttgattgcatgtgattccatggaaaattcaaaatcagtgaacaaggaggacgtgattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaaaaccgtcatcctctgggatagactgcaaaattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49513" stop="53628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49813" g_stop="50187" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="497" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53436" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="505" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E202595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49813" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGC</genome_strand>
        <mrna_strand>CATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAAACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214745" ref_strand="+" ref_description="SGN-E214745 [cLEC-79-N18]">
      <seq>gattcctgaagaagcgaaggtgaaattgaagaaattggcgtcagaatgggacgatatagtggatccgaatgcattagatgtgttcagattgaagggcgcgatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctaggaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggcaatcatctaagcacgggatgctgccacaacgacttgcagtatgggaacataatgatggatgaagagacnagatcaataacctttattgactatgaatatgctggttacaaccatgttgcatttgatatagcaaatcatttttgtgaaatgggtgctgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49569" stop="54496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49869" g_stop="50187" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="441" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53624" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="637" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497">
            <donor d_prob="0.751" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54122" g_stop="54196" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="712" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E214745" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49869" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53624"/>
          <exon e_start="54122" e_stop="54196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATTGTAAGTACTAAGTTTTTTATTCATCAATGTTCAGATGAAAAACTAAGAGGACAAATACAATTTACTAAATGAGATGCATATCTCACTAAATTTTAGCTATAGCAGTGTCTGCATGTGGTGATTACATCTAAATCTAATTTGGGCTTCCATGATCAATAACTAGGCAGTGCTTTATCCTGACATGTTTGCTGCAGGATGTAGGTGGGTCCTGGTTCAAAAACTTCTTCAAGCTCTTACTTATTTAGGAGCTGCACTTTTGTTTCTCGCCTTTGTATTTTGTTTCAGTTATTGATCATCCACTTGATAAGGAGCAAAAGGATAAGATAAATATTTGAAAAACCTAAACATTTCAAGAAAAATTGACGGACTTTTCAATGATAAGTTCTGTTTCCTGCTAGGTTGGCAATTGCCTAATTTCTGCAAATAATTCTTGCTGTTCATACAGTTATTATTTGGACTTAATTTCTGGTATTTTCTTTAATCTTTCCTATTAACAGGACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTAC</genome_strand>
        <mrna_strand>GATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACNAGATCAATAACCTTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGGTGCTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313300" ref_strand="+" ref_description="SGN-E313300 [cTOA-13-I21]">
      <seq>gatgacgaacgaggtgtatcaaatcaaatggcccagtaagaacccggaaaagcaacgatctangaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggcaatcatctaagcacgggatgctgccacaacgacttgcagtatgggaacataatgatggatgaagagacaagatcaataacctttattgactatgaatatgctggttacaaccatgttgcatttgatatagcaaatcatttttgtgaaatggttgctgactaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49668" stop="54500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49968" g_stop="50187" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="342" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53624" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="538" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54122" g_stop="54200" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="617" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E313300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49968" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53624"/>
          <exon e_start="54122" e_stop="54200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATTGTAAGTACTAAGTTTTTTATTCATCAATGTTCAGATGAAAAACTAAGAGGACAAATACAATTTACTAAATGAGATGCATATCTCACTAAATTTTAGCTATAGCAGTGTCTGCATGTGGTGATTACATCTAAATCTAATTTGGGCTTCCATGATCAATAACTAGGCAGTGCTTTATCCTGACATGTTTGCTGCAGGATGTAGGTGGGTCCTGGTTCAAAAACTTCTTCAAGCTCTTACTTATTTAGGAGCTGCACTTTTGTTTCTCGCCTTTGTATTTTGTTTCAGTTATTGATCATCCACTTGATAAGGAGCAAAAGGATAAGATAAATATTTGAAAAACCTAAACATTTCAAGAAAAATTGACGGACTTTTCAATGATAAGTTCTGTTTCCTGCTAGGTTGGCAATTGCCTAATTTCTGCAAATAATTCTTGCTGTTCATACAGTTATTATTTGGACTTAATTTCTGGTATTTTCTTTAATCTTTCCTATTAACAGGACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</genome_strand>
        <mrna_strand>GATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTANGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313390" ref_strand="+" ref_description="SGN-E313390 [cTOA-13-I19]">
      <seq>tttagaacccggaaaagcaacgatctatgaaggtgttggtgaggatctatgggaaaggtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggcaatcatctaagcacgggatgctgccacaacgacttgcagtatgggaacataatgatggatgaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49704" stop="53904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50003" g_stop="50187" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="307" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53604" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="483" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E313390" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50003" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGA</genome_strand>
        <mrna_strand>TTTAGAACCCGGAAAAGCAACGATCTATGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313301" ref_strand="+" ref_description="SGN-E313301 [cTOA-13-I23]">
      <seq>agaacccggaaaagcaacgatctaagaaggtgttggtgaggatctatgggaaaagtgttgatgtgttctttgatcggcagaatgaaattaagatttttgagtttatgtctaagcaaggccaaggacctcgcttgcttggtcgatttcagagtggtcgtattgaggaattcattcgagctcggacattatcagctcctgatctgcgtgatccagagatatcttccttgatagctgccaaaatgagagaatttcatgtgcttgatatgcctggtcctaagaccgtcatcctctgggatagactgcaaaattggcttaatgtagccaaaggtctggcttctactgaagaagctaaggactttaagttggaccttctaaaagatgagattgtattgttggaaaagaatcttgctggcaatcatctaagcacgggatgctgccacaacgacttgcagtatgggaacataatgatggatgaagagacaagatcaataacctttattgactatgaatatgctggttacaaccatgttgcatttgatatagcaaatcatttttgtgaaatggttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="49706" stop="54491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50006" g_stop="50187" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53203" g_stop="53324" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="304" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53429" g_stop="53624" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="500" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54122" g_stop="54191" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="570" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E313301" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50006" e_stop="50187"/>
          <exon e_start="53203" e_stop="53324"/>
          <exon e_start="53429" e_stop="53624"/>
          <exon e_start="54122" e_stop="54191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGGGTTAGTTTTTTTTCTTTCTATTTGAAAACAACATTTTTCTTGGACCTGAAGTTTACATATGGATTTTTACAATTTTAGTGATCTGCATGGATGTGTAAAAATGCATTTTAGCTGAGATTCTCGTTCGATTATCATTAGTTTAACATGGAACCGGGATGTCCAGGCCATTTTTGGTACATCTGACTAATTCCACTGAATACATGCCACCTCCCTACTACAGATGGTTCTATGTAACTCTATCCACCAAGTTATCCACCAAGTCTAGGAAGAAATCACTAGTGTTTTTGGTACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACGACAGGTGATTCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACAAAGAAATCGCTAGTGTTTTTGGCACATTTGACTAATTCCACGAGCTACGTGCCACCTCCCAAGTCCAACTACAGGTGGTTTTACTTAACCCTGTCTACCAAGTCTAGGACATATAGGAAGAGATCGCTAGTGTTTTTGGCACATCTGACTAATTGCACGGGGTACATGCCACCTCCCAACTACTGGTGATCCTAGGTAACTCTGACCACCAAGTCTAGGATAGATACGGAGAAATCACTAGTGTTTTTGGAACATTTGACTAATTCCATGAGGTACATGCCACTTCCCAAGTCCAACTACAGGTGGTTCTACGTAACCCTGTCGACCAAGTCTAGGACATATAGGAAGAGATCACTAGTGATTTTGTCTTTGTTGGAATTCGAACATGAGACCTCATGGTCCTCAAACCACTGCATTGACCAATAGGCCCCATACTCTTGGGTGCTAACATGTATTATTTTAGGATGGATGGAGTATCTGATGGTGATCATCATCATCCTTGTGAATATTTTGTTTCTTTTTTTCCAGCCTGCTGTTGCTATTGTTTCTGTTTTTGTTATGACTGCTACAAGAATGGCGTATGATGCTTTTTAGCTGATACTTTGTGATTAAGAAGTGATTTTTCTGGCATGCACTGCTGGGTACAATTTGATAATATGGTATACAGTATAATCCTCAATATTGTATATATGCTTTTGTTTTCTCGCTGTTACTCCACTTTCCAGTTAAAAACAAAGAACCCATTTTGGATGTAAATGTAAGGTCTAATGCCCAAAAATAGACCATAGTATGATTTGATCATGTTTGACATATGTTCTTGCTTGATGACTCTATGAGGCGGAGGGGCAGCATAATAACCTTTGGCGGTTGGCCTATCAGTGTGATGTTGTTAACTTTGTTACTCAAGTGCAATCATAGTTATTTGAGGCACAAGATTTTAGGTTTTAGTTAGAGTTTAATACTCCCTGTATCTAAAAAGTTTAGAAGTATCTAATTCGGTCATCATTTTCTTCTCCATTCCTCTAGTTGGCAATGTCAGATGCTAACAATTTACATGTAAATGAGGGAGAATTTAGGGGTTAAGTTTCACTGGTACTCTATATTCATCCTTCCCTTCTCTGTGCTGTGTAATTTTTTCCTGTTGTTTATATACATCCGTGTACATAAACATTTGTGCAACAGAAAATTTAATAGGATTTCTCTCTTGGTATTTAGAATTTTAAAATTTTGACAAGATTCTGATAGTTTTCGTTGATCTGATAGTATCTCTAGGATGATGCTTTGCTAGATCCTGATATCCTCATCTAGGATCCAGAAGAATAATCACCTAGATGACCAGCTTAATCAACTGGTTAATTTCATAAATTTCTGTAGTATGCTTACCTTGATCCGAATTTGAAGCAAGTTTCTTAAATGATAATTTTTCTGGGCCTTCACAAGTGATTTTGTTTCAATACCACCTCTTCTCAAAGACTACATAAATTTCTTTTCCCTTTACTGAAAGGAATATATACCCGTTTGCTGTTTCTGCATAATATTTCGAAAGAATGATTGGTTTGGTAAAAATTTAGATCAAGTAATAGCTGCCAATACATAATTAACCTTTGTTATTCATATAATTCTTGTTTGGTATAAGCTGAACTAATAGGTCTAACCAAACATAATAATCTCGTCTTTCTTGCCCATTATCCTAAAAAACCAGCAAAGGGGTTCCTTAATCCATCTCCCCCACTACTGGTTACTGCTGTCTCCATGTTTCATGTCCATCAATAAACTTATTAGCACAGGATAAAGAAGAAATTAAAGGTGAAATTACTGCCGTGATTAATTGAAAGACATGTAAGAATTTTGAAGGAAGAAAATCGAAACAGATGAACAAGTTGGGACGCATAAAAAGTATTTCTGTTGAGATGAAGGATGTATATGTGATGTGGGGCAAGGGCAGCCTTTTCAGGTCACAACCAAGTGACCTTATGCTGCCTGGGGAAAGCTACAGGGTTTGAGGATACCAGGAGAGGGGTTGCGTAAATTCTGAATGATATGAGAAGCGATCTAGATTAACAGTTAAATGCATAATATCCACTTATATGTTAAGCTTATTAAACTAAGAACTCCAAGCTTTCTGTTAGCTTATCCGCCTCTCCTTAGAAAAAACAATTAATTTGGGGTTTTGAGCCCTCTCCTAGTGGTTTCTTATATGATGCATTCAAGTTAACCCACTATTTGGTTTTGTTTATTGGTGAAGTTCTGATCCGCCACCTCTGGATAATCTTGATGTGACTGGCTGGCTTAGATGCTCAAAGACTTATGTTTCATGTTAGTTCATAGTAATACTTTGACAAAAGCATCTGGCCTCCCTTTGCCAAACCTAATTATTATGAAGCCAAGCAGATTTAGATTCTTCAGAGCTCATGATCACCATATTGCAGTTTCTTTGTAAGAGCTCCTGGGATCGTCAAAGTTTGCCTGGTTCCTCTAGGATTGCCTAATTTTCCTAGGTTTATCTCATGCTTGATTGACACTATTCTTAACCTACCTCTAATCTATTATTATCTGTGATGCTGTTGTAATTACTGATACTTCAGGAGAATGGGCACATTCATTAAATGTAATGCAATCTCCATGATTGGTATTTCAGACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCAGTATGCTCTTCTTTTTACTGTATATATGATAAATAAAAACTGCTAAATTATGTTTATCTTATACCAAAATGTCTAAATAACCTTTTGTTCTCGTATTGCTCTAGAAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATTGTAAGTACTAAGTTTTTTATTCATCAATGTTCAGATGAAAAACTAAGAGGACAAATACAATTTACTAAATGAGATGCATATCTCACTAAATTTTAGCTATAGCAGTGTCTGCATGTGGTGATTACATCTAAATCTAATTTGGGCTTCCATGATCAATAACTAGGCAGTGCTTTATCCTGACATGTTTGCTGCAGGATGTAGGTGGGTCCTGGTTCAAAAACTTCTTCAAGCTCTTACTTATTTAGGAGCTGCACTTTTGTTTCTCGCCTTTGTATTTTGTTTCAGTTATTGATCATCCACTTGATAAGGAGCAAAAGGATAAGATAAATATTTGAAAAACCTAAACATTTCAAGAAAAATTGACGGACTTTTCAATGATAAGTTCTGTTTCCTGCTAGGTTGGCAATTGCCTAATTTCTGCAAATAATTCTTGCTGTTCATACAGTTATTATTTGGACTTAATTTCTGGTATTTTCTTTAATCTTTCCTATTAACAGGACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTG</genome_strand>
        <mrna_strand>AGAACCCGGAAAAGCAACGATCTAAGAAGGTGTTGGTGAGGATCTATGGGAAAAGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA........................................................................................................AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242003" ref_strand="+" ref_description="SGN-E242003 [cLED-27-I20]">
      <seq>tatctttatttcattacgaatctcagatgtattggtctggtaaacaggtcgctctcccagtgaaccggaactggagaaattagttcaagaagtggagaagtatactcttgccagtcatcttttttggggtctatggggaataatatcggtacttctcctgaccttatatattctgtcatgataagagtagttatgagctgcgtacacaaaaagaacagtgaatagtctaagtaggaacttggaactacctagtctttaactgtagaaaactttatattgaaagtccgtcaacaattaatagatacatggtttgccgcattttgtgcccaagccataacagatttggctctttttctaccttttttgccttcgacaacaatgttgttattgagctgcataggcctttcttaacatccttcatttcctcccctttttcagcatcatgtcaataagatagacttcgattacttggggtatgctaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="54262" stop="55345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54562" g_stop="55045" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E242003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54562" e_stop="55045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</genome_strand>
        <mrna_strand>TATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729956" ref_strand="+" ref_description="SGN-E729956 [LA22CE02]">
      <seq>aagcagtgcagctcatgctctgatgatgcaaccacctcgtatgcttcgaatcacagtagtggcaagaagttatttggggttgatctttccaggggttctcctagtgttcaacaaaacggaacatttgactcagaaatagatcccctgagcaccaaggtttcagaacgaacgcttttgtaccatgttgaccctctaaagttagggtcaatcgcctcaggaaagctttggtgcagtaagcaggcaatattccccataggatttagaagtcgtgttaagttcttcgatgccagcagtcctgagataactagtagctatatatgcgagatcctgaatggtgggctcattggacctctattcaaggttagcttagaagagtgtccagatacgaacttagtgagttcatcagcgcagaaatgctgggaaatgatctcgcatagagtctttgaagaactagcaacgaagttaaatccaggaaggcaagatttgccaccattgcaacctgacacagaatgcatcaacggtctcggaatgtttgggttactctccccaccgatagttcagtccattgaagctcttgatacaaactatcaatgtctggagtactggaaaaacaagctaaaactcaaggacgagtgtgtaactgtcaaagggccttcaggttcatcggagagtactgttgacatggcaagatctgctgtgatggaaagaggtcagtgttcgggaaccaaggtggctactgaggaggaacatgcttactatagttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="59146" stop="56803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58846" g_stop="58591" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58590" i_stop="58485" i_length="106">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58484" g_stop="58381" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="360" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58380" i_stop="57888" i_length="493">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57887" g_stop="57687" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="561" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57686" i_stop="57310" i_length="377">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57309" g_stop="57103" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="768" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E729956" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58846" e_stop="58591"/>
          <exon e_start="58484" e_stop="58381"/>
          <exon e_start="57887" e_stop="57687"/>
          <exon e_start="57309" e_stop="57103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAGGTTTGTTGAATATACTTTTCATACTAAGAAATTTTCATTTGATGCAACATTTTATTCAAATTGCAATGGTCTCACTGTATATTTCAATGTTGATGCTCTTTAACAGGATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAGGTAAGATGTTATTCATAACTTTGCCCGATAAAATATGCGAGTTGAGAAAAAAAATGGATAATGAGGATTACTGTTATTTTATGCTAGTACTTGGAAGAAAAATATGTGAGTTATTCTCATTATTTTTGCATAGGGGTTTGTGTAAGGAAAAATTCATATTATTTTGTGTGCAGAGGAGGTACATTTACTTTATTTGTCGCAGCTAAGAATCTAGCACTTGATCTCCAAAACTTAGTCCACCACTAACCCTTTCTAAGTCTTCTCGTTAATAATTTTTCATGTTTATGAGCTCATACAAAAGAACCTTTAGGCCTGTTATGCACGAACTATTTGCAATTGTGCTGCTTTTAAATTTTATTATTGTGGCTGTCGCCTTGCCTTCTGCCTTTTAATTTTCGTTAGTGGCCTTGCAAATGACGATTGTCTACTTGATTCTAGTTTCTATGAATTTGCTGGATGCTAATTATTGTCTACTTGGAGTTTCTGATTTCAGGTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAGGTATACCTATATTATGTTGCTGTGTGCATGATTTTGCTCTTTCAAGTTTGTGATTTACTGGCTTTAGTTTGACCAACGAATAATCTGACCTGCGATTTTGGATTAATGCGACATTTCCAGAAAAAATGGATCCCACTAAGGACAATAGGTTTCTATCTTGTGATCTTGTAATTGGTTTATTAGCGGAATCACCTTATTGTCATCAACTTAAGTTTTACATTCTTACGCACATTTCTTATTTGAAACCTAGGATCCATTCTTCGTTGTTGAGAAGACTCTCTTCTTATGCAGCTTTCTTATTTCTGACTCTTTCAATAAGTAAAACACTTCCTTCCAAGTGAATTATTCTTACATTGTGCTAACTCTGGTGTATACAGTCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTAACTATAGTTCATCT</genome_strand>
        <mrna_strand>AAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAG..........................................................................................................GATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................TCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTTACTATAGTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463936" ref_strand="+" ref_description="SGN-E463936 [cPRO-16-M20]">
      <seq>agaaggaaatggacaaaaaacagatgtggctaagcctaaggattactgtaattgggtgatgccattgttgaggtttttggcatttggtgcaacaatttcagcaacattagttatggcacttaacaaccaaaagaaaacttttgttgttgccactattggtaccactcctattcaagctactctcaatgctaagttccagcacactccagcttttgtgttttttgttatagcaaacggactgtgcagtctccataacctcctcatgctagcattttgttttattggaagcaaatatgattacaagggacttcgattatatgtaattggaatcctagacatgataaatgtggcactaatctctggtggagcaacctcagcagcttttatgggacaacttggtagagatggaaattctcatgcaagatggaataaaatttgtgataaattttatacattttgtagccatggtgaaggagcaattattgcttcttttattggtttgctcttaatgatattactactgccattaatataattaagcttaaaaacgtcaagaattatggcaataattgtgccattaatattcctttatcaagaatatccctattgtcatttcatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="72327" stop="70250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72027" g_stop="71812" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71811" i_stop="71019" i_length="793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71018" g_stop="70895" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="340" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70894" i_stop="70819" i_length="76">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70818" g_stop="70588" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="570" r_length="230" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="631"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E463936" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72027" e_stop="71812"/>
          <exon e_start="71018" e_stop="70895"/>
          <exon e_start="70818" e_stop="70588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAAATGGACAAAAAATAGATGTGGCTAAGTCTAAGGTATACTATAATTGGGTGATGCCATTGTTGAGGTTATTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTATTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAACATACTCCAGCTTTTGTGTAAGCCCTTTCTACTTCTTTTTTTTTTATAGTATATAACTGTGGTGTTTGAGTAAGTTTATGGGTATTTTGATTGATCTTATGAGGTACTTTGTTATTTTCTACTAGCATAAATGTATCGAGCAACTTTGTCCATTAAGATTTTGGACAAATGATAAAGAAATGATCACCTTGTGTATACCAGGTCACCATACTACTAGAAACAATGGTTTTTTTCCGTCACAAATTCAGTGAAAGAATTGCATTATAGAACCTTATTTTCCTATTGATTTCTCATTGAATCAGCTAGTTGAAAAATGCATGGTGGAAAACAGATTCTCACTGAAATAGTAAAAAAAATATTCTAATTTTTTGCATATGAAAACATTACTCCCTCCACATATTAGTTGATCATTTTACTAAATACAGGTGATTATTTTACTAAATCAAGAAAGTATTACTTAAATTTTTCCAATTACCCTTGTAATTACTTCTTTTTTAAAAGTGTCACCTTTGTCTGTAAAATTTCCGAGAATTTTTTTAAGAGGTGAATTAGTAAAATTATCTTTTTATTTTTAATTTCTTAATATACATGTTAAAAGGAAAGTGATCAATCAATATAAGACACATGAAATACTATTTTTTCTTTTCTCATCATTTCAGCCAAGATTTAATCCAATAATAAGAAATCACATAGTGTATAAAAATGTTATTTGTCTTATATATGTGCTTTGTTAATCTATCGATTAAAAAAAATTCAACGTTATTTTTTCTCTTAAATATACATTTGAAAACGATTTTTCTGTGAACGCAGGTTCTTTGTTATAGCAAACGGACTAGTTAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAATAAATATGATTACAAGGGACTACGATTTTATGTAATTGGAATCCTAGACATGGTAATTAATTAATTAATTAATTAATTACTCTTTTTTTTCAATTAATATTATTAATTAATCTCTTGTATTATGAAAGATAAATGTGGCATTAATCTCTGGTGGAGCAAGTTCAGCAGCATTTATGGGACAACTTGGTAGGAATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAACCATGGTGAAGGAGCTATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCAATTAATATAATTAAGCTTAAAAACATCAATAATTGTGCCATTAAT</genome_strand>
        <mrna_strand>AGAAGGAAATGGACAAAAAACAGATGTGGCTAAGCCTAAGGATTACTGTAATTGGGTGATGCCATTGTTGAGGTTTTTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTTTTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAGCACACTCCAGCTTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTGTTATAGCAAACGGACTGTGCAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAGCAAATATGATTACAAGGGACTTCGATTATATGTAATTGGAATCCTAGACATG............................................................................ATAAATGTGGCACTAATCTCTGGTGGAGCAACCTCAGCAGCTTTTATGGGACAACTTGGTAGAGATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAGCCATGGTGAAGGAGCAATTATTGCTTCTTTTATTGGTTTGCTCTTAATGAT-ATTACTACTGCCATTAATATAATTAAGCTTAAAAACGTCAAGAATTATGGCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431347" ref_strand="-" ref_description="SGN-E431347 [STM-55-E24]">
      <seq>agaaggaaatggacaaaaaacagatgtggctaagcctaaggattactgtaattgggtgatgccattgttgaggtttttggcatttggtgcaacaatttcagcaacattagttatggcacttaacaaccaaaagaaaacttttgttgttgccactattggtaccactcctattcaagctactctcaatgctaagttccagcacactccagcttttgtgttttttgttatagcaaacggactgtgcagtctccataacctcctcatgctagcattttgttttattggaagcaaatatgattacaagggacttcgattatatgtaattggaatcctagacatgataaatgtggcactaatctctggtggagcaacctcagcagcttttatgggacaacttggtagagatggaaattctcatgcaagatggaataaaatttgtgataaattttatacattttgtagccatggtgaaggagcaattattgcttcttttattggtttgctcttaatgataattactactgccattaatataattaagcttaaaaacgtcaagaattatggcaataattgtgccattaatattccttaatcaagaattcactaattgtcatttcattcaaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="72327" stop="70251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72027" g_stop="71812" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71811" i_stop="71019" i_length="793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71018" g_stop="70895" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="340" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70894" i_stop="70819" i_length="76">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70818" g_stop="70588" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="571" r_length="231" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E431347" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431347" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72027" e_stop="71812"/>
          <exon e_start="71018" e_stop="70895"/>
          <exon e_start="70818" e_stop="70588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAAATGGACAAAAAATAGATGTGGCTAAGTCTAAGGTATACTATAATTGGGTGATGCCATTGTTGAGGTTATTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTATTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAACATACTCCAGCTTTTGTGTAAGCCCTTTCTACTTCTTTTTTTTTTATAGTATATAACTGTGGTGTTTGAGTAAGTTTATGGGTATTTTGATTGATCTTATGAGGTACTTTGTTATTTTCTACTAGCATAAATGTATCGAGCAACTTTGTCCATTAAGATTTTGGACAAATGATAAAGAAATGATCACCTTGTGTATACCAGGTCACCATACTACTAGAAACAATGGTTTTTTTCCGTCACAAATTCAGTGAAAGAATTGCATTATAGAACCTTATTTTCCTATTGATTTCTCATTGAATCAGCTAGTTGAAAAATGCATGGTGGAAAACAGATTCTCACTGAAATAGTAAAAAAAATATTCTAATTTTTTGCATATGAAAACATTACTCCCTCCACATATTAGTTGATCATTTTACTAAATACAGGTGATTATTTTACTAAATCAAGAAAGTATTACTTAAATTTTTCCAATTACCCTTGTAATTACTTCTTTTTTAAAAGTGTCACCTTTGTCTGTAAAATTTCCGAGAATTTTTTTAAGAGGTGAATTAGTAAAATTATCTTTTTATTTTTAATTTCTTAATATACATGTTAAAAGGAAAGTGATCAATCAATATAAGACACATGAAATACTATTTTTTCTTTTCTCATCATTTCAGCCAAGATTTAATCCAATAATAAGAAATCACATAGTGTATAAAAATGTTATTTGTCTTATATATGTGCTTTGTTAATCTATCGATTAAAAAAAATTCAACGTTATTTTTTCTCTTAAATATACATTTGAAAACGATTTTTCTGTGAACGCAGGTTCTTTGTTATAGCAAACGGACTAGTTAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAATAAATATGATTACAAGGGACTACGATTTTATGTAATTGGAATCCTAGACATGGTAATTAATTAATTAATTAATTAATTACTCTTTTTTTTCAATTAATATTATTAATTAATCTCTTGTATTATGAAAGATAAATGTGGCATTAATCTCTGGTGGAGCAAGTTCAGCAGCATTTATGGGACAACTTGGTAGGAATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAACCATGGTGAAGGAGCTATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCAATTAATATAATTAAGCTTAAAAACATCAATAATTGTGCCATTAAT</genome_strand>
        <mrna_strand>AGAAGGAAATGGACAAAAAACAGATGTGGCTAAGCCTAAGGATTACTGTAATTGGGTGATGCCATTGTTGAGGTTTTTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTTTTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAGCACACTCCAGCTTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTGTTATAGCAAACGGACTGTGCAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAGCAAATATGATTACAAGGGACTTCGATTATATGTAATTGGAATCCTAGACATG............................................................................ATAAATGTGGCACTAATCTCTGGTGGAGCAACCTCAGCAGCTTTTATGGGACAACTTGGTAGAGATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAGCCATGGTGAAGGAGCAATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCCATTAATATAATTAAGCTTAAAAACGTCAAGAATTATGGCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431346" ref_strand="+" ref_description="SGN-E431346 [STM-55-E24]">
      <seq>agaaggaaatggacaaaaaacagatgtggctaagcctaaggattactgtaattgggtgatgccattgttgaggtttttggcatttggtgcaacaatttcagcaacattagttatggcacttaacaaccaaaagaaaacttttgttgttgccactattggtaccactcctattcaagctactctcaatgctaagttccagcacactccagcttttgtgttttttgttatagcaaacggactgtgcagtctccataacctcctcatgctagcattttgttttattggaagcaaatatgattacaagggacttcgattatatgtaattggaatcctagacatgataaatgtggcactaatctctggtggagcaacctcagcagcttttatgggacaacttggtagagatggaaattctcatgcaagatggaataaaatttgtgataaattttatacattttgtagccatggtgaaggagcaattattgcttcttttattggtttgctcttaatgataattactactgccattaatataattaagcttaaaaacgtcaagaattatggcaataattgtgccattaatattccttaatcaagaatatcctaattgtcatttcatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="72327" stop="70250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72027" g_stop="71812" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71811" i_stop="71019" i_length="793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71018" g_stop="70895" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="340" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70894" i_stop="70819" i_length="76">
            <donor d_prob="0.947" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70818" g_stop="70588" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="571" r_length="231" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="633"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E431346" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72027" e_stop="71812"/>
          <exon e_start="71018" e_stop="70895"/>
          <exon e_start="70818" e_stop="70588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAAATGGACAAAAAATAGATGTGGCTAAGTCTAAGGTATACTATAATTGGGTGATGCCATTGTTGAGGTTATTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTATTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAACATACTCCAGCTTTTGTGTAAGCCCTTTCTACTTCTTTTTTTTTTATAGTATATAACTGTGGTGTTTGAGTAAGTTTATGGGTATTTTGATTGATCTTATGAGGTACTTTGTTATTTTCTACTAGCATAAATGTATCGAGCAACTTTGTCCATTAAGATTTTGGACAAATGATAAAGAAATGATCACCTTGTGTATACCAGGTCACCATACTACTAGAAACAATGGTTTTTTTCCGTCACAAATTCAGTGAAAGAATTGCATTATAGAACCTTATTTTCCTATTGATTTCTCATTGAATCAGCTAGTTGAAAAATGCATGGTGGAAAACAGATTCTCACTGAAATAGTAAAAAAAATATTCTAATTTTTTGCATATGAAAACATTACTCCCTCCACATATTAGTTGATCATTTTACTAAATACAGGTGATTATTTTACTAAATCAAGAAAGTATTACTTAAATTTTTCCAATTACCCTTGTAATTACTTCTTTTTTAAAAGTGTCACCTTTGTCTGTAAAATTTCCGAGAATTTTTTTAAGAGGTGAATTAGTAAAATTATCTTTTTATTTTTAATTTCTTAATATACATGTTAAAAGGAAAGTGATCAATCAATATAAGACACATGAAATACTATTTTTTCTTTTCTCATCATTTCAGCCAAGATTTAATCCAATAATAAGAAATCACATAGTGTATAAAAATGTTATTTGTCTTATATATGTGCTTTGTTAATCTATCGATTAAAAAAAATTCAACGTTATTTTTTCTCTTAAATATACATTTGAAAACGATTTTTCTGTGAACGCAGGTTCTTTGTTATAGCAAACGGACTAGTTAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAATAAATATGATTACAAGGGACTACGATTTTATGTAATTGGAATCCTAGACATGGTAATTAATTAATTAATTAATTAATTACTCTTTTTTTTCAATTAATATTATTAATTAATCTCTTGTATTATGAAAGATAAATGTGGCATTAATCTCTGGTGGAGCAAGTTCAGCAGCATTTATGGGACAACTTGGTAGGAATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAACCATGGTGAAGGAGCTATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCAATTAATATAATTAAGCTTAAAAACATCAATAATTGTGCCATTAAT</genome_strand>
        <mrna_strand>AGAAGGAAATGGACAAAAAACAGATGTGGCTAAGCCTAAGGATTACTGTAATTGGGTGATGCCATTGTTGAGGTTTTTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTTTTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAGCACACTCCAGCTTTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTTGTTATAGCAAACGGACTGTGCAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAGCAAATATGATTACAAGGGACTTCGATTATATGTAATTGGAATCCTAGACATG............................................................................ATAAATGTGGCACTAATCTCTGGTGGAGCAACCTCAGCAGCTTTTATGGGACAACTTGGTAGAGATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAGCCATGGTGAAGGAGCAATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCCATTAATATAATTAAGCTTAAAAACGTCAAGAATTATGGCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352757" ref_strand="+" ref_description="SGN-E352757 [cTOS-11-H6]">
      <seq>ggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactacaagtgttgtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgctatgcccaaagtcataagtgaagaatgttattatgtaccttatatgccatattattgtatatgactgtataccgtgaaccttactgcctaaacaccttgcttttgagaggcgaattcaggatctagagactagagttagtgagctttgaatgagtgcggtttttattagatgtatgcatcttttccccttgtgcatgtgtgtaatggcacctgcagacttgtctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="75321" stop="72486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75021" g_stop="74971" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="201" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73303" g_stop="72786" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="720" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E352757" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75021" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTT-CCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</genome_strand>
        <mrna_strand>GGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACAAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425257" ref_strand="-" ref_description="SGN-E425257 [STM-44-F20]">
      <seq>ggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcncaggtcctaaccagtttgctcatgtctactgcgggaattgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcatctttgaaccctcctaacggcactgctacacctgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagcaatgtagttgttggtgtaacgacaacgtcatagattgtcagctatatttgctgttcgtggacgacaattgagagttttgctcttaacaattggaaagatgagtataaagacggccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttttttgtaacattttgaattatgattgtggggtgattgaagctacagcaagtgtggtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgaatatgcccatagtcattagtgaagaatgttattatgtaccttatatgccatattattgtatatgaccatagagtgagaaccttactgccttaaaaaaatggattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="76875" stop="72609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76575" g_stop="76464" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="225" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="303" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="375" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73303" g_stop="72909" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="766" r_length="391" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E425257" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425257" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76575" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTG-CTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCC-TAAACACCTTGCTTTTG</genome_strand>
        <mrna_strand>GGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCNCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAACCAGTTTGCTCATGTCTACTGCGGGAATTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCATCTTTGAACCCTCCTAACGGCACTGCTACACCTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGCAATGTAGTTGTTGGTGTAACGACAACGTCATAGATTGTCAGCTATATTTGCTGTTCGTGGACGACAATTGAGAGTTTTGCTCTTAACAATTGGAAAGATGAGTATAAAGACGGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTT-TTTTG-TAACATTTTGA-ATTATGATTGTGGGGTGATTGAAGCTAC-A--GCAAGTGTGGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGAATATGCCCATAGTCATTAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACCATAGAGTGAGAACCTTACTGCCTTAAAAAAATGGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224085" ref_strand="+" ref_description="SGN-E224085 [cLEL-19-G22](-)">
      <seq>aacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactacaagtgttgtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgctatgcccaaagtcataagtgaagaatgttattatgtaccttatatgccatattattgtatatgactgtataccgtgaacctttctgcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="73553" stop="72620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73253" g_stop="72922" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="349"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E224085" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73253" e_stop="72922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAA</genome_strand>
        <mrna_strand>AACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACAAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTTCTGCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621414" ref_strand="+" ref_description="SGN-E621414 [75160]">
      <seq>gccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcatctttgaaccctcctaacggcactgctacacctgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagcaatgtagttgttggtgtaacgacaacatcatagcttgtcagctaaacttgctgttcgcggacaacaattgagagttttgctcgcaacaattggaaagatgagtataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctggtttttttgtaacattttgaattatgattgtggggtgattgaagctacagcaagtgtggtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgaatatgcccatagtcataagtgaagaatgttattatgtaccttatatgccatattattgtatatgaccattaaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="75347" stop="72643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75047" g_stop="74971" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="155" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="227" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73303" g_stop="72948" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="577" r_length="350" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="592"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E621414" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75047" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTG-CTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACT</genome_strand>
        <mrna_strand>GCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCATCTTTGAACCCTCCTAACGGCACTGCTACACCTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGCAATGTAGTTGTTGGTGTAACGACAACATCATAGCTTGTCAGCTAAACTTGCTGTTCGCGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGATGAGTATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTG-GTTT-TTTTG-TAACATTTTGA-ATTATGATTGTGGGGTGATTGAAGCTAC-A--GCAAGTGTGGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGAATATGCCCATAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746341" ref_strand="+" ref_description="SGN-E746341 [GI|47104713]">
      <seq>caatatttaacaagaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatttttttttttcgtgtgtggggatatatatatatatatatatattataatagaggggtaccctatcttccagatttgttcattgactggaagaataaatttacctcacagatcggcagaaattagctcttctaactcagacgactcgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcaaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactcctgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgttgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcatcagctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagatgagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgtaacattttgatattatgattgtggggtgattgaagctactataacaagtgttgtgactatttggagtctgtaattgatgactacgcgttagatttgtggcgtgatatgcccaaagtcataagtgaagaatgttattatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78544" stop="72677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78244" g_stop="78009" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="324" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="438" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="549" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="662" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="740" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="812" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.740" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73303" g_stop="72980" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1135" r_length="323" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1138" polyA_stop="1156"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E746341" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>1127</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78244" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTT--T-T-T--CG---TGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTAT</genome_strand>
        <mrna_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATTTTTTTTTTTCGTGTGTGGGGATATATATATATATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTAACTCAGACGACTCGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCAAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTCCTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTTGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCATCAGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGATGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTG-TAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTATAACAAGTGTTGTGACTATTTGGAGTCTGTAATTGATGACTACGCGTTAGATTTGTGGCGTGATATGCCCAAAGTCATAAGTGAAGAATGTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701719" ref_strand="+" ref_description="SGN-E701719 [FA16DA06]">
      <seq>agggaagaataaatttacctcacagatcggcagaaattagctcttctacctcagacgactcgatattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactactagtgttgtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgctatgcccaaagtcataagtgaagaatgttattatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="77599" stop="72677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77301" g_stop="77220" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="196" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="307" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="420" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="498" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="570" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73303" g_stop="72980" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="894" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="897" polyA_stop="913"/>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E701719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77301" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="72980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTAT</genome_strand>
        <mrna_strand>AGGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714239" ref_strand="+" ref_description="SGN-E714239 [FB10DF01]">
      <seq>gaataaatttacctcacagatcggcagaaattagctcttctacctcagacgactcgatattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactactagtgttgtgactatttggagtctgtaattgataactacgcgttagatttgtggcgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="77595" stop="72712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77295" g_stop="77220" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="190" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="301" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="414" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="492" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="564" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73303" g_stop="73012" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="856" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E714239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77295" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="73012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTA</genome_strand>
        <mrna_strand>GAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279763" ref_strand="+" ref_description="SGN-E279763 [cLER-8-E19]">
      <seq>tgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgttaacattttgatattatgattgtggggtgattgaagctactactacaagtgttgtgactatttggagtctgtaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="75348" stop="72740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75048" g_stop="74971" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="156" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="228" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73303" g_stop="73040" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="492" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E279763" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75048" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="73040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGAT</genome_strand>
        <mrna_strand>TGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACAAGTGTTGTGACTATTTGGAGTCTGTAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621089" ref_strand="+" ref_description="SGN-E621089 [71796]">
      <seq>tatattaccaatgttaatgcaggagatggaagaagccatgcatctttgaaccctcctaacggcactgctacacctgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagcaatgtagttgttggtgtaacgacaacatcatagcttgtcagctaaacttgctgttcgcggacaacaattgagagttttgctcgcaacaattggaaagatgagtataaagacagccgttgcatataaatatggtagtgtttagtgttaatactacaagcatacccctgtttttttgtaacattttgaattatgattgtggggtgattgaagctacagcaagtgtggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="73959" stop="72765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="168" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73303" g_stop="73062" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="402" r_length="234" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E621089" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="73062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGA</genome_strand>
        <mrna_strand>GCAGGAGATGGAAGAAGCCATGCATCTTTGAACCCTCCTAACGGCACTGCTACACCTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGCAATGTAGTTGTTGGTGTAACGACAACATCATAGCTTGTCAGCTAAACTTGCTGTTCGCGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGATGAGTATAAAGACAGCCGTTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAAGCATACCCCTG--TTT-TTTTG-TAACATTTTGA-ATTATGATTGTGGGGTGATTGAAGCTAC-A--GCAAGTGTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305224" ref_strand="+" ref_description="SGN-E305224 [cLEX-15-K11]">
      <seq>ccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttgtaacattttgatattatgattgtggggtgattgaagctactactacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="75386" stop="72769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75087" g_stop="74971" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="195" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="267" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73303" g_stop="73069" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="501" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E305224" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75087" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="73069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGT</genome_strand>
        <mrna_strand>CCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTG-TAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698231" ref_strand="+" ref_description="SGN-E698231 [FA05CF11]">
      <seq>ggaagaataaatttacctcacagatcggcagaaattagctcttctacctcagacgactcgatattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgtcgatgagagtggcaagttggtgagtaatgtagttgttggtgtaacaacaacatcatagctcgtctgctaaacttgctgttcgtggacaacaattgagagttttgctcgcaacaattggaaagaggagaataaagacagccgctgcatataaatatggtagtgtttagtgttaatactacaaccatacccctgtttttcttttggtaacattttgatattatgattgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="77599" stop="72793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77299" g_stop="77220" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="194" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="305" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="418" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73481" g_stop="73410" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="568" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73303" g_stop="73093" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="779" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E698231" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77299" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73410"/>
          <exon e_start="73303" e_stop="73093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTGGTAAGTTTGTTTCCAACATGATTAACCTCCTTTCATTTATATCTTTTGGCTTCTTCACTCTCAAGTTATCCACCTTATCATTAACGATACCATTTTACATTTCTAGGTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGG</genome_strand>
        <mrna_strand>GGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG..........................................................................................................GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGGTAACATTTTGATATTATGATTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546059" ref_strand="+" ref_description="SGN-E546059 [TUS-69-D16]">
      <seq>caatatttaacaagaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatttttttttttcgtgtgtggggatatatatatatatatatatattataatagaggggtaccctatcttcgagatgtgttcattgactggaagaataaagttacctcacagatcggcagaaatgagctcttctaagtcagacgacgcgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcaaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatgcacctttgaaccctcctaacggcactgctactcctgcttcaagatcctcttcaactgccaaggctcgttcacaaaatcaaactgttgtcgtccaaaacccaatgtctgttgatgagagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78544" stop="73116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78244" g_stop="78009" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="324" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="438" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="549" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="662" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="740" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73481" g_stop="73418" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="804" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E546059" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78244" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTT--T-T-T--CG---TGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTG</genome_strand>
        <mrna_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATTTTTTTTTTTCGTGTGTGGGGATATATATATATATATATATATTATAATAGAGGGGTACCCTATCTTCGAGATGTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAAGTTACCTCACAGATCGGCAGAAATGAGCTCTTCTAAGTCAGACGACGCGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCAAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTCCTGCTTCAAGATCCTCTTCAACT.............................................................................................GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTTGATGAGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700064" ref_strand="+" ref_description="SGN-E700064 [FA12AB02]">
      <seq>agcctcaatttacctcacagatcggcagaaattagctcttctacctcttacgactcgatattcaaacagattgaaagatatgcacagtcagttgatgtgcagtgggtgcaggacaacgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcactatgccattatattacccatgctaatgcaggacatggaagaccccatgcacctttgaaccctcctaacggcactgctactactgcttcaggatcctcttcaactgccaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="77596" stop="73274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77296" g_stop="77220" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="191" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="302" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="415" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73652" g_stop="73575" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="493" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73481" g_stop="73473" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="502" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E700064" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77296" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73575"/>
          <exon e_start="73481" e_stop="73473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACTGTGAGTTCATAAGTCTGCCGCATGTTCTTTTCTTACTTACTAGGTTCTAAATTGACTAAATTGATTTCTGAAATATGTTCATATCTGCTTTAGGCCAAGGCT</genome_strand>
        <mrna_strand>AGCCTCAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCTTACGACTCGATATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCACAGTCAGTTGATGTGCAGTGGGTGCAGGACAACGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCACTATGCCATTATATTACCCATGCTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACATGGAAGACCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT.............................................................................................GCCAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454248" ref_strand="+" ref_description="SGN-E454248 [cSTS-22-L21]">
      <seq>caaaatttaacaagaagaataaggagatgtaagaaaaatatccaaaaaccaatctttggaaatcttgaattacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagacaatctcaagtaccctttactgtatttttttttttcgtttgtggggatatatataatagaggggtaccctatcttccagatttgttcattgattggaagaataaatttacctcacggatcggcagaaattagctcttctaactcagtcgatttgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtcctaaccagtttgctcatgtctactgcgggaattgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaatgcaggagatggaagagcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78544" stop="73331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78244" g_stop="78009" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="305" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="530" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="643" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318">
            <donor d_prob="0.402" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73652" g_stop="73631" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="665" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E454248" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78244" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
          <exon e_start="73652" e_stop="73631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAATGTGAGTATGATGATTCATTTTTCTTTTTGATCTTTGGTAAAAATTTTAGCTGATGCTTGGTCCATATAGTTAAAGAAGTAAAATAACAAAGAGGAATGAATTTTAAGATTGTGCTTTTGGTAATGAGAATTCTATTTTGTGCGTAATATAATATTTACTTACTTTGTTAGGATCAGAGAATAGCCAACTACCATATTGTCTTAGTTTAATTACAATTTAAAGTGAGAATATATATCAACTTGACTGTAAATAAGTGATAAAATGAGTGTATGAAAGACTTGTCTTGCATGCATTGGTTGGTGTAAACACCAGTGCGGGTAAGTTTTTTTATTTTGTTGCTCAAGGGTGATGCAAATCAATCAAAATGACAATGTTGAGCCTTTTATGTAAATAGTAAGATTTATGATATTAGAATGATCGGAATTGAAGAAGATAAGAAGGGAATAATTAGCACAGTGAACATGTTGTTGTTGATGCTTCAAAATAGCCAATTCCCGAGTCATTGTTACTCATGGAGAATTGTTGGGTTTGTCTCTGTTTAAGCTGCTCTTCTCTGGTTCTTCCTTCTCCACTTAATAGTCTGAACCTATAGGAATCAGTAGATTATAGCGATTAGCCTTGCTTCATATCATGGATTGTAAAGCAAGTAAATTAAATTGAAAATCGTCAGCACATTTCGAGGACTTTCACATAAAGCAAAGTGTTAAGAGTGGTTTAATCCTTATGAAAGTTTAACGGAGAAGGCTTATGTTGGAAGGTAAGTTTATCTTGAGCTTTTGATATCAGCATCATCAGCCCACTTAAATACAAACTTATTTTGAACTTTTAGTTGCAAATTTTAGAAGTTATTGATATCACAGATTGTGGAAAAAGAAGGGGTAAGTGGGTGAGTGAGGAAGCAAAATAAGGTCTTTTGGTTACTAGTCCATTGCTTATGTTATTTGCGTATGTATCGGAATACAACAAGAATATGCTCAGTGTAATCCCATAAGTGGAATCTGGTTAGTGTATACACAGCCTTACCCTTACATTCCGAAGGTAGAGAAGTTGTTTTTGATAGACCTTGACTCAAGTAAAGCATATCGAAATCAGTAAGAAAAGGAAATGCAGTAGTGAAGAAGCCATGTAGAAAATAATGGAGAAAAGAAACAAATAATATGATAACTAAAAGAAGGAAACAACAGGTACTAGTAGAATTGAAGAATAAGATAGTAGGAGAGTAATAATAATAATATTGATAAGAGAGACTAGACAACATGCGTACATGAATATGATAAGGAATTTCAGTTTTCATGTGTTTATATGTATTTTTTTGCAGGCAGGAGATGGAAGAGCCCATG</genome_strand>
        <mrna_strand>CAAAATTTAACAAGAAG-AATAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTGGAAATCTTGAA-TTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGACAATCTCAAGTACCCTTTACTG--TA-TTTTTTTTTTTCGTTTGTGGGG----ATATA-TATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACGGATCGGCAGAAATTAGCTCTTCTAACTCAGTCGATTTGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAACCAGTTTGCTCATGTCTACTGCGGGAATTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGATGGAAGAGCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425256" ref_strand="+" ref_description="SGN-E425256 [STM-44-F20]">
      <seq>ctatatttaacaagaagaataaggagatgtaagaaaaatatccaaaaaccaatctttggaaatcttgaattacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagacaatctcaagtaccctttactgtatttttttttttcgtttgtggggatatatataatagaggggtaccctatcttccagatttgttcattgattggaagaataaatttacctcacggatcggcagaaattagctcttctaactcagtcgatttgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcgaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtcctaaccagtttgctcatgtctactgcgggaattgccgtatgatgctgatgtatccatgtggagctccatcggttaaatgtgcagtatgccattatattaccaatgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78544" stop="74671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78244" g_stop="78009" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="305" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="419" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="530" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="74971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="643" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E425256" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78244" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="74971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT</genome_strand>
        <mrna_strand>CTATATTTAACAAGAAG-AATAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTGGAAATCTTGAA-TTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGACAATCTCAAGTACCCTTTACTG--TA-TTTTTTTTTTTCGTTTGTGGGG----ATATA-TATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACGGATCGGCAGAAATTAGCTCTTCTAACTCAGTCGATTTGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAACCAGTTTGCTCATGTCTACTGCGGGAATTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357176" ref_strand="+" ref_description="SGN-E357176 [cLHT-17-F2]">
      <seq>aatatttaacaagaagaaaaaaggagatgtaagaaaaatatccaaaaaccaatcttttgaaatcttgaatttacccaatttctgtcggaattttcgctcagatttccatttgaattccaacccattttcagataatctcaagtacccttcactgtatttttttttttcgtgtgtggggatatatatatatatatatatattataatagaggggtaccctatcttccagatttgttcattgactggaagaataaatttacctcacagatcggcagaaattagctcttctaactcagacgactcgacattcaaacagattgaaagatatgcagagtcagttgatgtgcagtgggtgcaggacaatgcttctttatcccagaggagcttctaatgtctgctgtgcagtgtgcaatgcactcacccctgtcccaccacctggaatggaaatggctcaattgatatgtggaggctgtcgtacattacttatgcatccacgtggagcaaacagtgtgagatgctcctgctgtcatacggtgaaccttgtcccaggtccaaaccagtttgctcatgtctactgcgggaactgccgtatgatgctgatgtatccatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="78543" stop="74719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78243" g_stop="78009" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710">
            <donor d_prob="0.664" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77298" g_stop="77220" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="323" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77056" g_stop="76943" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="437" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76574" g_stop="76464" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="548" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75083" g_stop="75019" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="613" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E357176" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78243" e_stop="78009"/>
          <exon e_start="77298" e_stop="77220"/>
          <exon e_start="77056" e_stop="76943"/>
          <exon e_start="76574" e_stop="76464"/>
          <exon e_start="75083" e_stop="75019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTT--T-T-T--CG---TGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTGGTAAGAAGATTGCTTTTTTTTTCTTTATCCAATTTCTTGGGGGGTTTTCCCTTTTAATTTGGTAGGCTAAACATGATATTTTTTTTACTTTTCAATCATGTTTGTGATGGGTGTAATTGATTGTGGATAAATTTTGGTTGGTGGGTAGGAAGAATTTGGGGCAAGGGCTCTCGTTTTGGTTAGCTCTAGAAATTACCTAGCTTTTTCTTCCTCTGCTGAGATTTGAACCTGGTTGATGAGCCACACTCATGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTGGTTATGGGTGTTTGATTAAACAATTTTTTTTGTAAGATTTGTGTTTGACCCGTCTTAGCATGAAAAACTTGATATAGGAATTTTTCTTGTGTGTATAATCTGTGAATCCTGAGAAAAAAGATTGTAGCTTCAACCATTGGATGAATAATTATGAAAGGAACTTTCTTGAAGAAAAGTATTTATTGTTCTCTTTCATTTTGTCAAGCAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAGGTGAAACCTTTTTGTCTCAACAGAGATTGTTAAGACGAAGTTCATTGTTTCATGATGGACTTTTAGATTTATTACAATCTTGAGAACTGTAACTCAAAGATCATTTTGCAATTTAGTTTGTGAGCTTGCCATTACTATTTGGTTAATGTTTTTTGTTCGACAGATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTGGTATCTGTGCTTTTCTTGATTCTGATGTGGTTATAAGTACTTTTTTTTTTCTTTCAAATTTGTGTGGCTGATTTTTGGATTATGGCCCCCTTCCATGTTGATTACAAGTGTTGTTGCTAGAAGATTGTTGTTAGGAAAGAAAATTAGTGCACTTAAAAACATTTTGAGTATCTAATAGTAACGCTATGCTTGATGCTGACATGGTAAATAAAGCCATAAAGTGGGCTAGGTTTGGGGAGGCTTGGTGTATAGATCTGTTTGGATTGAGATGTAGTATTGTTTGTTGTTTTGCCTTGACATGGATTGAAGCGTAGTTGTTATTGTGTTCTGTTACTCGAAGGTGTTGCTTAAATTTTGATCTTTCTCAGGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAGGTACAGTTTATAACATCCCTTCCCTTGATTTCGGAGACTAATGTTTGTCTGGTTATGAAAATCTAGTGTCTCTTTGCTGGAATGAAATGTTTCCTTCATTTGAACAGAATATGAATCTAACTTTTGATATTATCCACTTAAGCTTGACCTTCGGTTGTTTTCATTTATCATATGAGATCTTTTTCCTACATATTCATCAAAAGTTTATCATATGAGATCTCAAATTGAGATACCAGCATTTTTATTCTTGTATTACATCAGAAAAATCTGTTGGAAGAGTAACATTACTTTGATGATCTAACTATGTAATACATAAGTGAACATTTCGGTATGGTTGTGTTTTTAGTTGAACTATGTTATGACTTATGAGTTTAGAGTGTGGTCCCAGCTGAAATTCACAACTTTCGAGCACTTCAAGCTTTTGCCTGGGGGAAGGGAGCTGTATAAATTTATGTCTTTGTCAGACTTGGTGGAATATGGTTATGGGATCACCAAAAAGCTTCATTATTGTATGTTTGTGTTATGTTTTTTCCTATTGATGCTCAATTTATCAGAAGTTTTGCCTGACAGATAGGTGTAAGTCCAATTGATTTCTCTTGAGTGTGGTTATTCCTCGAAAATAATAACCTGATCTGGTGCTCTTTGTAAACTAGTAGCCAGTCACATAAGATATAGATATCTGCTGTTTAATCTTCTTATCAGCTTTACTTTTTGGTCATATCTGCTTCATTTTGCAGCACATCTGTAATTTGCAAACAGAACTTAGTTATGACTGGTAATTGGTGGATTTAACTTGGTGTATACATTTTTCTCCAAGCACATGTTCTTAAATGTCATTGACTAGTCTGTTCCTATGTGTCTTTTTTGGTTTTAAGAAGATATTACTGGAATCTATGCATGAGTAACCAGAGTGGGTGTATATTGAATTGTTCTCTTTCCTTTCCAATCTCAAAAGTTTTCTTTCCCCCTAGGTCTTCTATCTTGTTTATAGTGCTGGGAATATATTTTTTCATTCTTCCCTTGGTCAGAAGCTACATTATTTGAAGTTGGATGGTGGTCCTGAAGGCAACAACATTTGTAGGTTGACCATTCCAAGAAGTAAGAAATGTAGTGTCACAATGCTGATTGGGCACTAATGTTATGTGCAAAATCAGGTGCCTTTTACTAGAGCTAAGCGGTAAAGACAGATGTTTAAGATGAGATAGTAACTCATTGAATTTTAAGGGGACTATACCTGAATCATTTGCATGTTCTATCTTTCACTAGAATTTAATAGGGTAAAGAGCTACATGAATTGTTTGTGTTTGAGGATTTGTACATTCGATAGAGCTTAGGTTTCTTGTTACCTGGATGACATATAATTGTGCTGTCGATCTTCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGA</genome_strand>
        <mrna_strand>AATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATTTTTTTTTTTCGTGTGTGGGGATATATATATATATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTAACTCAGACGACTCGACATTCAAACAGATTGAAAG...................................................................................................................................................................ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCAAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460575" ref_strand="+" ref_description="SGN-E460575 [cPRO-31-P19]">
      <seq>catatcttacacatcagagatgaaaagatcagtgtcctttatcttgcttgacttagctaaacttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgcaccagcttaggaattggtggtcatatcactggaggagcttatggtcctatgatgaggaaatatggtcttggagcagacaatgctgtcgatgctcggattgttgatgccagtggcagagttcttgacagggccttaatgggagaggatttattttgggcaatcagagggggtggaggaggcagttttggcataattttggcttggaaagttagacttgttcctgttccatcaactgtgacagttttcacagttccaaagacactggaaactggtgcaacaaaagtcctaaacaaatggcaacatgttgcacacaagattgatgaagatctcttcatcagaatcctcataactacagtcaattcaacaaagggggagaaaacagtgcaaacagcttacaaagccttgtttctttggaaaactgataggcttcttgatgtgatgaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91662" stop="92895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91962" g_stop="92595" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E460575" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91962" e_stop="92595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCTTACACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAAGGGGAAGAAAACAGTGCAAACAGCTTACCAAGCTTTGTTTCTTGGAAAAACTGATAGGCTTCTTGATGTGATGAATCAT</genome_strand>
        <mrna_strand>CATATCTTACACATCAGAGATGAAAAGATCAGTGTCCTTTATCTTGCTTGACTTAGCTAAACTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGCACCAGCTTAGGAATTGGTGGTCATATCACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGCTGTCGATGCTCGGATTGTTGATGCCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTATTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATTTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCCTAAACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAAGGGGGAGAAAACAGTGCAAACAGCTTACAAAGCCTTGTTTCTTTGGAAAACTGATAGGCTTCTTGATGTGATGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460457" ref_strand="+" ref_description="SGN-E460457 [cPRO-31-I12]">
      <seq>catatcttacacatcagagatgaaaagatcagtgtcctttatcttgcttgacttagctaaacttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgcaccagcttaggaattggtggtcatatcactggaggagcttatggtcctatgatgaggaaatatggtcttggagcagacaatgctgtcgatgctcggattgttgatgccagtggcagagttcttgacagggccttaatgggagaggatttattttgggcaatcagagggggtggaggaggcagttttggcataattttggcttggaaagttagacttgttcctgttccatcaactgtgacagttttcacagttccaaagacactggaaactggtgcaacaaaagtcctaaacaaatggcaacatgttgcacacaagattgatgaagatctcttcatcagaatcctcataactacagtcaatttcacaaaggggaagaaaacagtgcaaacagcttaccaagccttttgttctggaaaactgataggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91662" stop="92875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91962" g_stop="92575" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E460457" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91962" e_stop="92575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCTTACACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAAGGGGAAGAAAACAGTGCAAACAGCTTACCAAGCTTTGTTTCTTGGAAAAACTGATAGGC</genome_strand>
        <mrna_strand>CATATCTTACACATCAGAGATGAAAAGATCAGTGTCCTTTATCTTGCTTGACTTAGCTAAACTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGCACCAGCTTAGGAATTGGTGGTCATATCACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGCTGTCGATGCTCGGATTGTTGATGCCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTATTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATTTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCCTAAACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTTCACAAAGGGGAAGAAAACAGTGCAAACAGCTTACCAAGCCTTTTGTTCTGG-AAAACTGATAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431391" ref_strand="+" ref_description="SGN-E431391 [STM-55-K2]">
      <seq>catatcttacacatcagagatgaaaagatcagtgtcctttatcttgcttgacttagctaaacttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgcaccagcttaggaattggtggtcatatcactggaggagcttatggtcctatgatgaggaaatatggtcttggagcagacaatgctgtcgatgctcggattgttgatgccagtggcagagttcttgacagggccttaatgggagaggatttattttgggcaatcagagggggtggaggaggcagttttggcataattttggcttggaaagttagacttgttcctgttccatcaactgtgacagttttcacagttccaaagacactggaaactggtgcaacaaaagtcctaaacaaatggcaacatgttgcacacaagattgatgaagatctcttcatcagaatcctcataactacagtcaattcaacaaagggggaagaaaacagtgcaaacagcttaccaagccttgtttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91662" stop="92860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91962" g_stop="92560" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E431391" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91962" e_stop="92560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCTTACACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAA-GGGGAAGAAAACAGTGCAAACAGCTTACCAAGCTTTGTTTCTTG</genome_strand>
        <mrna_strand>CATATCTTACACATCAGAGATGAAAAGATCAGTGTCCTTTATCTTGCTTGACTTAGCTAAACTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGCACCAGCTTAGGAATTGGTGGTCATATCACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGCTGTCGATGCTCGGATTGTTGATGCCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTATTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATTTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCCTAAACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAAGGGGGAAGAAAACAGTGCAAACAGCTTACCAAGCCTTGTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464210" ref_strand="+" ref_description="SGN-E464210 [cPRO-17-E18]">
      <seq>catatcttacacatcagagatgaaaagatcagtgtcctttatcttgcttgacttagctaaacttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgcaccagcttaggaattggtggtcatatcactggaggagcttatggtcctatgatgaggaaatatggtcttggagcagacaatgctgtccatgctcggattgttgatgccagtggcaaagttcttgacagggccttaatgggagaggatttattttgggcaatcaaagggggtggaggaagcaggtttggcataattttgggttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91662" stop="92654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91962" g_stop="92354" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E464210" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91962" e_stop="92354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAA</genome_strand>
        <mrna_strand>CATATCTTACACATCAGAGATGAAAAGATCAGTGTCCTTTATCTTGCTTGACTTAGCTAAACTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGCACCAGCTTAGGAATTGGTGGTCATATCACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGCTGTCCATGCTCGGATTGTTGATGCCAGTGGCAAAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTATTTTGGGCAATCAAAGGGGGTGGAGGAAGCAGGTTTGGCATAATTTTGGGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464195" ref_strand="+" ref_description="SGN-E464195 [cPRO-17-C8]">
      <seq>catatcttacacatcagagatgaaaagatcagtgtcctttatcttgcttgacttagctaaacttcgtgcgattaaagtggacattgaggacaacagtgcatgggttcaagctggtgcgacgattggtgaagtgtactataggattgcagaaaaaagcaagacacatggttaccctgctggcctatgcaccagcttaggaattggtggtcatatcactggaggagcttatggtcctatgatgaggaaatatggtcttggagcagacaatgctgtcgatgctcggattgttgatgccagtggcagagttcttgacagggccttaatgggagaggatttattttgggcaatcacagggggtggaggaggcaggtttggcataattttggcttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="91662" stop="92654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91962" g_stop="92354" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E464195" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91962" e_stop="92354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAA</genome_strand>
        <mrna_strand>CATATCTTACACATCAGAGATGAAAAGATCAGTGTCCTTTATCTTGCTTGACTTAGCTAAACTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGCACCAGCTTAGGAATTGGTGGTCATATCACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGCTGTCGATGCTCGGATTGTTGATGCCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTATTTTGGGCAATCACAGGGGGTGGAGGAGGCAGGTTTGGCATAATTTTGGCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431392" ref_strand="+" ref_description="SGN-E431392 [STM-55-K2]">
      <seq>ccgggccccccctcgagttttttttttttttttttgttgttgttcctcaaatttgtttcacatttcatttcaatacaaacttnctgctacaatacattacaggttatgaaaccaaatgaaaagcaaaacttgaacttatttttacttttttccttaaatattacaatataccctcaagccaaaagcagttcttcagtgaatcaaacttttcccatcttgaccaactttgaatggaaggattggtagactctgttcatgccagaagaagttatcaggatcaaccttagtcttgacaagcacaagcctgtcataattgttcttgtagtactttttcccccagacactagcttccaataaatttgagttagcatttttgttcatgcccaaatcaagatctctataattcacataagcttctcttgggaacttggatacaaaagtgcccatgtactcataaagtcctctgatccagttgatatgtttatctgcagttttcttatctccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98153" stop="92640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93446" g_stop="92940" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E431392" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93446" e_stop="92940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGCACCCACCCTCGTCATACCCCACTAGGTTTGTTGTTGTTCCTCAAATTTGTTTCACATTTCATATCAATACAAACTT-CTGCTACAATACATTACATGTCATGAAACCAAATGAAAAGCAAAACTTAAACTTATTTTTACTTTTTTCCTTAAATATTACAATACACCATCAAGCCAAATGCAGTTCTTCAGTGAATCAAACTTTTCCCATCTTGACCAACTTTGAATGGAAGGATTGGTAGACTCTGTTCATGCCAGAAGAAGTTATCAGGATCAACCTTAGTCTTGACAAGCACAAGCCTGTCATAATTGTTCTTGTAGTACTTTTTCCCCCAGACACTAGCTTCCAAGATATTTGAGTTGGCATTTTTGTTCATACCCAGATCAAGATCTCTATAATTCACATAAGCTTCTCTAGGGTACTTGGATACAAAAGTGCCCATGTACTCATAAAGTCCTCTGATCCAGTTGATATGTTTATCTGCAGTTTTCTTGTCTCCATCT</genome_strand>
        <mrna_strand>CCGGGCCCCCCCTCGAGTTTTTTTTTTTTTTTTTTGTTGTTGTTCCTCAAATTTGTTTCACATTTCATTTCAATACAAACTTNCTGCTACAATACATTACAGGTTATGAAACCAAATGAAAAGCAAAACTTGAACTTATTTTTACTTTTTTCCTTAAATATTACAATATACCCTCAAGCCAAAAGCAGTTCTTCAGTGAATCAAACTTTTCCCATCTTGACCAACTTTGAATGGAAGGATTGGTAGACTCTGTTCATGCCAGAAGAAGTTATCAGGATCAACCTTAGTCTTGACAAGCACAAGCCTGTCATAATTGTTCTTGTAGTACTTTTTCCCCCAGACACTAGCTTCCAATAAATTTGAGTTAGCATTTTTGTTCATGCCCAAATCAAGATCTCTATAATTCACATAAGCTTCTCTTGGGAACTTGGATACAAAAGTGCCCATGTACTCATAAAGTCCTCTGATCCAGTTGATATGTTTATCTGCAGTTTTCTTATCTCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351254" ref_strand="+" ref_description="SGN-E351254 [cTOS-6-F23]">
      <seq>atacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtccgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggacgagattggtgtggacattgcatcacagttatcttcagctccaaaaggccggattgcatcaaagacagttgaaaatgttgcccctcctagttctgatactgctgcagatgtcgaggaacttgagaagaggttggcctctcttcgaagaatttgatgaagaacgtggacaacttttatatgatccttgtacaaatttcgcttttagaattaaaaatatagtatgtattatggtaccaatttgtatttctcaactataatcctatagcaccaaacatgacatttatgctgtaagaatgaagtggatcctttttgggttttatgatccttctccatgtaagttttgtatgtagttccttgaattcattgatataccttaccctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="95244" stop="93166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95039" g_stop="95032" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="80" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="152" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="233" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94315" g_stop="94280" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="269" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94181" g_stop="94120" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="331" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94119" i_stop="93761" i_length="359">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93760" g_stop="93460" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="632" r_length="301" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E351254" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95039" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94280"/>
          <exon e_start="94181" e_stop="94120"/>
          <exon e_start="93760" e_stop="93460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCCTAGGTATGTGGAACTGTTTTAAATCACACGCCATACATGGATTTTCTTGTGTAGTTGAGTTGGATTTTTGTGTGTCTACATGTGTCGAGCTACGTTTCTTCTGCATTTCCATATTAAACTGTCACAGTCAATTCTCAACAGTACTTCCTTTCTGTTCTCTGGTTATACTCTCCTTGTGTTTCTGATCATGCGGACTCCTTTGACCTACGGGACTATAAAGTTTGATTGATTCTTGTACTGAACCCAATCTAGAATTCCTCTATAATTGTTATTGGCGTTAATATGGACTCCTAAGAATATCCTTCCTAGTTCTTCTGGGAACATGTTAAGTCTACCTAACAATTCTTCCCATGTGAATGCAGTTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAGAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTCACAAGGTAGA</genome_strand>
        <mrna_strand>ATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCCGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGACGAGATTGGTGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGCCGGATTGCATCAAAGACAGTTGAAAATGTTGCCCCTCCTAG.......................................................................................................................................................................................................................................................................................................................................................................TTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAGAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344320" ref_strand="+" ref_description="SGN-E344320 [cTOF-16-B19]">
      <seq>attaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcaccaaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaactggaaatgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtccgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggacgagattggtgtggacattgcatcacagttatcttcagctccaaaaggccggattgcatcaaagacagttgaaaatgttgcccctcctagttctgatactgctgcagatgtcgaggaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98230" stop="93429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97930" g_stop="97871" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="105" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="140" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="191" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="296" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="368" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="440" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="521" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94315" g_stop="94280" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="557" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="94181" g_stop="94120" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="619" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="94119" i_stop="93761" i_length="359">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93760" g_stop="93729" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="651" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E344320" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97930" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94280"/>
          <exon e_start="94181" e_stop="94120"/>
          <exon e_start="93760" e_stop="93729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCCTAGGTATGTGGAACTGTTTTAAATCACACGCCATACATGGATTTTCTTGTGTAGTTGAGTTGGATTTTTGTGTGTCTACATGTGTCGAGCTACGTTTCTTCTGCATTTCCATATTAAACTGTCACAGTCAATTCTCAACAGTACTTCCTTTCTGTTCTCTGGTTATACTCTCCTTGTGTTTCTGATCATGCGGACTCCTTTGACCTACGGGACTATAAAGTTTGATTGATTCTTGTACTGAACCCAATCTAGAATTCCTCTATAATTGTTATTGGCGTTAATATGGACTCCTAAGAATATCCTTCCTAGTTCTTCTGGGAACATGTTAAGTCTACCTAACAATTCTTCCCATGTGAATGCAGTTCTGATACTGCTGCAGATGTCGAGGAACTTG</genome_strand>
        <mrna_strand>ATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACTGGAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCCGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGACGAGATTGGTGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGCCGGATTGCATCAAAGACAGTTGAAAATGTTGCCCCTCCTAG.......................................................................................................................................................................................................................................................................................................................................................................TTCTGATACTGCTGCAGATGTCGAGGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560830" ref_strand="+" ref_description="SGN-E560830 [20545]">
      <seq>atccaaaaaacaaagggaaaaaaccccattttcatgattcaggttttcttcaaaggctattagggttttttcccctcttccatttcaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcacctaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaacaggaaacgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtctgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggatgagattggtgtggacattgcatcacagttatcttcagctccaaaaggtcggattgcatcgaagaaagtcgacaatgttgcccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98321" stop="93824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98040" g_stop="97871" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="216" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="251" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="302" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="407" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="479" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="551" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="632" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94315" g_stop="94280" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="668" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="94181" g_stop="94123" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="727" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E560830" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98040" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94280"/>
          <exon e_start="94181" e_stop="94123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTT-TCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCC</genome_strand>
        <mrna_strand>ATCCAAAAAACAAAGGGAAAAAACCCCATTTTCATGATTCAGGTTTTCTTCAAAGGCTATTAGGGTTTTTTCCCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCTAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGATGAGATTGGTGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGTCGGATTGCATCGAAGAAAGTCGACAATGTTGCCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449318" ref_strand="+" ref_description="SGN-E449318 [cSTS-6-I3]">
      <seq>catgattcaggttttcttcaaaagccattagggttttttcccctcttccatttcaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcacctaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaacaggaaacgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtctgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggatgagattggcgtggacattgcatcacagttatcttcagctccaaaaggtcggattgcatcgaagaaagtcgaaaatgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98308" stop="93828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98008" g_stop="97871" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="184" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="219" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="270" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="375" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="447" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="519" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="600" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94315" g_stop="94280" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="636" r_length="36" r_score="0.917"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98">
            <donor d_prob="0.380" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="94181" g_stop="94128" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="690" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E449318" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98008" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94280"/>
          <exon e_start="94181" e_stop="94128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTT-TCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACAGGTAGATTTCGGATTAAGGATAGTTGAGCGTATAATCAGTTGCTTTCCTCATCTTTAGTTCACGAGCTGTTCATTCATTATTGATTTTTATTTTGGCAGTTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCC</genome_strand>
        <mrna_strand>CATGATTCAGGTTTTCTTCAAAAGCCATTAGGGTTTTTTCCCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCTAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGATGAGATTGGCGTGGACATTGCATCACAG..................................................................................................TTATCTTCAGCTCCAAAAGGTCGGATTGCATCGAAGAAAGTCGAAAATGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339532" ref_strand="+" ref_description="SGN-E339532 [cTOE-16-C6]">
      <seq>agaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcaccaaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaactggaaatgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaacaagcaaatggcacctgcaaaacaagttaaagtgatcagagaattccagaagcagtcatcacagttggacatgacaattgagatgatgtccgaatccattgatgagactttggataaagatgaagctgaagaagaaactgaggagcttacaaaccaggtgctggacgagattggtgtggacattgcatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98236" stop="93981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97936" g_stop="97871" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="111" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="146" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="197" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="302" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94871" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="374" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94714" g_stop="94643" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="446" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94480" g_stop="94400" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="527" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94315" g_stop="94281" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="562" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E339532" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97936" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94871"/>
          <exon e_start="94714" e_stop="94643"/>
          <exon e_start="94480" e_stop="94400"/>
          <exon e_start="94315" e_stop="94281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAGGTACTGATTATTTGTTGTTGTGAGTTTCTTTTCTCTTTTCCTTTTAATCCTTAAAACTTTTGATACTCATCCATTTTGTTTGCGTTTGTGCTACCATTTAATTATTAAGGTGGTAAAGCCCCCCAATTGGTTTATTCTTGTGTTTTTACTTCTCAGCAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACAGTAAGCACTTTCATCCTTCTAAGCGATGCTTCACATTATGGACTTACTTCATGCTATAAGCTCTCTGTACTTGTGGACAAATGCAACGTCTTGAAGGCAAACATTTCAGTTTGATGTGAAGTTCAGCCTAAGCATACTAATGAAGCCATCTGATTTTTCCAGATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAGGTTCAATTGTTACTCATCAGGCTTAGTCAGTTTCCTAATTGTATTTTTCTAGTCATCTATTCTAATTTGTGTTTTCATGTTTAGGTGCTTGACGAGATTGGTGTGGACATTGCATCACA</genome_strand>
        <mrna_strand>AGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACTGGAAATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG............................................................................................................................................................CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA..................................................................................................................................................................ATTGAGATGATGTCCGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG....................................................................................GTGCTGGACGAGATTGGTGTGGACATTGCATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365634" ref_strand="+" ref_description="SGN-E365634 [cLPT-12-D24]">
      <seq>tttcttataaaaattccaaaagggaaaaaaccattttggatcacccattttcatgattcagcttttcttcaaaagccattagggtttttgtcctcttccatttcgaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttctccaaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaacagccaaaacaggaaacgaggccgccaccaaaattctagctcgtcaacttgtgagattgcggcaacaaattgtcaatttgcaaggtagtcgtgctcaaattaggggtgtagcaactcatacacaggcactatatgctagcacctctatgtctactggaatgaaaggtgcaactaaagcgatgtctgccatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98335" stop="94574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98068" g_stop="97871" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="235" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="270" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96019" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="321" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95136" g_stop="95032" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="426" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94942" g_stop="94874" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="495" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E365634" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98068" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96019"/>
          <exon e_start="95136" e_stop="95032"/>
          <exon e_start="94942" e_stop="94874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCACAAAAATTCCAAAAAACAAAGGGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTTTCCTCTTCCATTTC-AAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAGGCAAGTGTTTGCAAATTAATTCTTTTTTCCTGACTACTTTACTTGGAATTGTGATCATTCTAATAGATAATGGCTTCTAGTGGGTGCTTATTTGCATTGGAAACTGCATACTTTTTGCATCCCGATGATTCTTTTGTTTATCAGAATTTGAAATACAGTCTCTTGAGAGATGAGCCATTCTCAGATTGCATAAATCGTTGCCCTTCTGAAGAATTCTTGCATAGTCACAACCTTAGAGAAAGATTATTTGATAGGGAATTATCAGAATTCGAAAGACATCGGAAGAATTAGAGCCAACATAGTTTAACTAATTTTAAATTCTTAATGTTCTGAATTCTCTCACCAACAAACAATTCACAAAATTTATATATGTATTAGTTTATGTATTTACCATTAAATGCTTGTATGAGGGAGGGTGAGCCATGTTAGCTGGAAATGTTTCAAAATAGAGAAAGAGAGGCTGAAACGAGGCAGTTAACTGAGTTGTTGAAAAGAAAGGCAGTGCCCGAAGCACTTGCTATCGAGCAGGCAGGACTGAGTTGAAAAAGGAGCTCTACTTGAAAGGAATGTAGTAACTTGATTTAATGCTCGCTAAGGCTTACAAATATATTGAAGACTCTATTCAGTTGGTCTTTGAAACACTGATTTTACTCGGTGTAATAAGACTCAAGTTTGAATCAAGGCTAATTAAAGGCTTGGATATTCATTGAGAACTTGATTCAGTTAAAGCTTTGGTGGTAAACATGGATAATTATACTTGTGATCCAGGTGAGAAATGAATGGTATTTTTGAAAAAAGGGTGAGTAAAGAACTCATCGCATCTGCTATAAGCCATTTTTTTTCCTCAAAAGTAAATCTTGCTCACATACTTTGACTTATCAGGCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAGGTCAACCTTTTCTCCCAATTATTATTGTGTATGAAAAGTAATTGAAATTTTTACTGGATCTTATATGTGTCTTCTTTTCTCTTCTGTAGGCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAAC</genome_strand>
        <mrna_strand>TTTCTTATAAAAATTCC--A--A--AAGGGAAAAAA-CC--ATTTTGGATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTGTCCTCTTCCATTTCGAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCTCCAAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCACCAAAATTCTAGCTCGTCAACTTGTGAGATTGCGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG.........................................................................................GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619741" ref_strand="+" ref_description="SGN-E619741 [70434]">
      <seq>atttcaagaaaattctagggttcaagaatcattaacaaaagaagatggagaagttgaacagcattttcaagaagaagacttcacctaaagaagcattgaggaccagcaaaagggaaatggctgttgctaccagaggcattgaacgggagatctcatccttacaaatggaggagaaaaagttagttgcagagatcaagcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="98260" stop="95737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97960" g_stop="97871" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97779" g_stop="97735" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="135" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96284" g_stop="96250" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="170" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96069" g_stop="96037" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="203" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E619741" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97960" e_stop="97871"/>
          <exon e_start="97779" e_stop="97735"/>
          <exon e_start="96284" e_stop="96250"/>
          <exon e_start="96069" e_stop="96037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAGGTAAGATTTTTGCCCCCTTTTTTTTTTTTTTTTTTAATTTTGTGTTTGGAGTTATGATCTATGGTGAATTTTTTTTGTAATTGATTAACAGAAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAGGTACATGACTCACTAGCTGAGAATTTGATTTAGTTTTGTTTTATGAAAGAGTAGCTTCGCATTATTTGATTTAGAAATAATACTCTGTAAGCTCATTTTGGATCTCAAATGCATAGGCGCTTATGCCCATTGTTCGTGTTATGCATAAACATCTTTCTTTTGGGGATGCTATAATAGTGGTTGTATTCTTTTTAGTTTGATTTTAAATGTACATCGAATGCTATGATCTTTTCCTTGTTAAGCAAGAGATGCTTAATTTGTTTGGACGTCTAGAAATATATGCTCCGGCAAAGAGAGAAAAAGAATCGCTCTTGGTGGAAATTTCGGTCTTCGATATTTGGAATTTGAAATACTATTAGGTATATCAACTAAAGGAAACCCCTCGGAAATATTAGGTTAAGGTTGTTGTGCCTTTGTTCTTCATAGTTTCTACTTTGCAATAAGAATAACAAGGATGAGTGATAGTGAAAAGGTTCCATTTTTATGTGAAAGTTTTTATTGAGGATATACTGGTTGAACGTTCATTAGTAATTAGACAACAAAGTCATGTAATATCGGTGAAGGATTAGGTAGAATAGGTGGATGGCTCCGCTCTATTACCTTCTATTTCAATTCTCTATGGCACTGTTGCTTCATAACAGGATATGATATTAGGAAAAATGGTATAATTAGTTTTTGGGACTAAAAGGTAGTTCAGGTGCATTGTGAAACAATATAACCTGCTTTGCCTGGACAATTCACAGAGTTGGAAGAAGTGCTATGTTGGGTAAAATCTAGAGGTACTTGTTTCCTTTGCAAGTGACTGGCTGTATGAACTCAAGTACTTGAAGGTTTTATTGACTCTTTTGTTTACTTTTGGTGTCATTGTTGGGTCTCCTTCTTAATTTTGATAAAGCTATCAGGGGTCAGCTGTTTGCTAAATGAGGAAACAAATTACATATTCCAGGTTTTATATTTTGAACTATCATCATTTTTACACCATTCTAGTATATTTCACATCATTACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTTTGGACTTCCATGTTGGAGGTCTCTAGTTCGAAACCCCTTGCCAGCGAAAGAAAGGGGTTTGCCTTCTAGGTCAAGCTCCTGGTGCAGGTTACCTCTCCTACGGCTGTGGGCTTCCCTTGTCATAAATTTATTTTATAAAAAATAGTATATTTCACATCATTGTCATTTGCACAAGCAAGCAGTTGGAGAATGCAAAAAGTATTAAACAATTTTGGAAAATCATTGTCCAGAATGTATCATAGTTGGATGTTATTCTTATTTTTTCTTTAGATCATTATCATTTTGATCCACGTTATCTTTTGTGTTGTTATATAATGGGTTTGATTATGATAACTTGCATTGGCTTCCTCGTTTCTTATTTGGTGTTTTTACTTTTCATTAATTCGTCTCCGTTTTTGTTCATGTATAACTTTAGGCATCGAACGGGAGATCTCATCCTTACAAATGGAGGTAAGTTATTAGGAAAATGTTCATAGACATGAGGCAAGTGTGTTTGTTCAGTAAGTTCAGAGTATTCTTGTGAAATTTAAGTCACGAGAACTTCAGAGTATTCTTTCAATAATCATCTTTTCATCTGTGTGAATCTACTTACTTGTGAACTTATATACTTCTTATTTGACTATCTCGTAGGAGAAAAAGTTAGTTGCAGAGATCAAGCAAACA</genome_strand>
        <mrna_strand>ATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCTAAAG...........................................................................................AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAACGGGAGATCTCATCCTTACAAATGGAG....................................................................................................................................................................................GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706637" ref_strand="+" ref_description="SGN-E706637 [FA30CA11]">
      <seq>gtggaaagttatgcaaaggctaggataccgctggaggttatgtggactgatattgattacatggatggttttaaggacttcacactcgatccagttaacttcccactggagcgggtaaatttttttctcaggaagcttcatcagaatgatcagaaatatgtactaatagtagatccaggaattagtatcaacaatacatatgacacctataggagaggcatggaagcagatgtcttcataaaacgcgataatatgccccaccaaggggttgtttggccagggaatgtttactatcctgattttctaaatccagctactgaagtattttggagaaatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcattacttcccctcctacaccatcatccacctttgatgaccctccgtacaagataaacaactctggcgatcacttgcccatcaactatagaacagttccagccacttcaacacattttggtaatacaatagattataatgtccataacctttatggattactagaatctagagccacctatagtgctttggttaatgtcactggtaaaaggccattcattcttgcaagatcaacttttcttggctctggcagatatacgtcacattggactggagacaatgctgctacatggaatgatttggcatactccattcctactatcttgaactttggattgtttggaattccaatggttggagctgatatatgtggtttttcaagtaacactactgaagagctttgccgccgctggattcagcttggagcattctatcccatttgcagagaccactctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="101962" stop="103874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102262" g_stop="102439" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102559" g_stop="103205" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="825" r_length="647" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103536" g_stop="103574" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="864" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E706637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102262" e_stop="102439"/>
          <exon e_start="102559" e_stop="103205"/>
          <exon e_start="103536" e_stop="103574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAGGTAACTGGTCTCCGTCATCAAGTTTTAACAATTTAACATTTACCTAGATAAATTAGATACGAGTACGTCTCATCATCATGTAACAAGTGTTATTTTGTTTGTCTTTCTTTTTACCGCAGGAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAGGTAAATTCATGCTTGGAGTTTTGTCAACAATGCCGCCTCCAATCTCTCTTTCTCCCCCTAAAGCTTTAACTTTTCACCAATGTTAAATAGCCATGAAATGTGTTGTTTTTCAAGGAACACTGTTGCATTATAAAGTTCAATGAACCAGAGTTATTCGTCGTCTTAAATAGTATGCTTTAAAATTGTGTTTAAGAAAAGTTAAAGCATGTGTCTATCTCTCAGTTTGACCAAATCGTTAGTTTGATACCGTAGAAGAAGAATTTTATCATAATATTAGGAGCTCTCTTCGTCTTTGACTTCTTTGTAATGAGAGAGATTGGCTTTATGCAGCTTGGAGCATTCTAT-CCATTTGCAAGAGACCACTCTGCT</genome_strand>
        <mrna_strand>GTGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAG.......................................................................................................................GAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................CTTGGAGCATTCTATCCCATTTGC-AGAGACCACTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460352" ref_strand="+" ref_description="SGN-E460352 [cPRO-30-D12]">
      <seq>gttatgcagaggctaggataccactggaggttatgtggactgatattgattacatggatggttttaaggacttcacactcgatccagttaacttcccactggagcgggtagttttttttctcaggaagcttcatcagaatgatcagaaatatttactaatagtagatccaggaattagcatcaacaatacatatgacacctataggagaggcatggaagcagatgtcttcataaaacgcaataatatgccttaccaaggggttgtttggccagggaatgtttattatcctgattttctaaatccagctactgaaatattttggagacatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcataacttcccctcctacaccatcatccacctttgatgaccctccctacaagataaacaactctggcgatcacttgcccatcaattatagaacagttccagccacttctacacattttggtaatacaatggagtataatgttcataacctttatggattacttgaatctagagccacttatagtgcgttggttaatgtcactggtaaaaggccattcattttctgcagatcaacttttcttggctctggcagatacacgtcacattggactggagacaatgctgctacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="101969" stop="103380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102269" g_stop="102439" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102559" g_stop="103080" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="693" r_length="522" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E460352" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102269" e_stop="102439"/>
          <exon e_start="102559" e_stop="103080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAGGTAACTGGTCTCCGTCATCAAGTTTTAACAATTTAACATTTACCTAGATAAATTAGATACGAGTACGTCTCATCATCATGTAACAAGTGTTATTTTGTTTGTCTTTCTTTTTACCGCAGGAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGA</genome_strand>
        <mrna_strand>GTTATGCAGAGGCTAGGATACCACTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAGTTTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATTTACTAATAGTAGATCCAG.......................................................................................................................GAATTAGCATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCAATAATATGCCTTACCAAGGGGTTGTTTGGCCAGGGAATGTTTATTATCCTGATTTTCTAAATCCAGCTACTGAAATATTTTGGAGACATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATAACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCCTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAATTATAGAACAGTTCCAGCCACTTCTACACATTTTGGTAATACAATGGAGTATAATGTTCATAACCTTTATGGATTACTTGAATCTAGAGCCACTTATAGTGCGTTGGTTAATGTCACTGGTAAAAGGCCATTCATTTTCTGCAGATCAACTTTTCTTGGCTCTGGCAGATACACGTCACATTGGACTGGAGACAATGCTGCTACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436213" ref_strand="+" ref_description="SGN-E436213 [STM-62-N19]">
      <seq>gttatgcagaggctaggataccactggaggttatgtggactgatattgattacatggatggttttaaggacttcacactcgatccagttaacttcccactggagcgggtagttttttttctcaggaagcttcatcagaatgatcagaaatatttactaatagtagatccaggaattagcatcaacaatacatatgacacctataggagaggcatggaagcagatgtcttcataaaacgcaataatatgccttaccaaggggttgtttggccagggaatgtttattatcctgattttctaaatccagctactgaaatattttggagacatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcataacttcccctcctacaccatcatccacctttgatgaccctccctacaagataaacaactctggcgatcacttgcccatcaattatagaacagttccagccacttctacacattttggtaatacaatggagtataatgttcataacctttatggattacttgaatctagagccacttatagtgcgttggttaatgtcactggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="101969" stop="103294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102269" g_stop="102439" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102559" g_stop="102994" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="607" r_length="436" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E436213" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102269" e_stop="102439"/>
          <exon e_start="102559" e_stop="102994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAGGTAACTGGTCTCCGTCATCAAGTTTTAACAATTTAACATTTACCTAGATAAATTAGATACGAGTACGTCTCATCATCATGTAACAAGTGTTATTTTGTTTGTCTTTCTTTTTACCGCAGGAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAA</genome_strand>
        <mrna_strand>GTTATGCAGAGGCTAGGATACCACTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAGTTTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATTTACTAATAGTAGATCCAG.......................................................................................................................GAATTAGCATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCAATAATATGCCTTACCAAGGGGTTGTTTGGCCAGGGAATGTTTATTATCCTGATTTTCTAAATCCAGCTACTGAAATATTTTGGAGACATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATAACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCCTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAATTATAGAACAGTTCCAGCCACTTCTACACATTTTGGTAATACAATGGAGTATAATGTTCATAACCTTTATGGATTACTTGAATCTAGAGCCACTTATAGTGCGTTGGTTAATGTCACTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702879" ref_strand="+" ref_description="SGN-E702879 [FA19DG10]">
      <seq>gtttactatcctgattttctaaatccagctactgaagtattttggagaaatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcattacttcccctcctacaccatcatccacctttgatgaccctccgtacaagataaacaactctggcgatcacttgcccatcaactatagaacagttccagccacttcaacacattttggtaatacaatagattataatgtccataacctttatggattactagaatctagagccacctatagtgctttggttaatgtcactggtaaaaggccattcattcttgcaagatcaacttttcttggctctggcagatatacgtcacattggactggagacaatgctgctacatggaatgatttggcatactccattcctactatcttgaactttggattgtttggaattccaatggttggagctgatatatgtggtttttcaagtaacactactgaagagctttgccgccgctggattcagcttggagcattctatccatttgcaagagaccactctgctaaggacacaaccccccaagagctctatagttgggattcagttgctgcagcggccaagaaagtccttgggctccgatatcagttacttccgtacttttatatgcttatgtacaaggcacatacaaaagggactcccattgcacgacccctcttcttctctttccctcaagatgccaagacatttgatatcagcacgcagttccttctcggtaaaggtgtcatgatctcacctgtacttaagcaaggagcaacctctgttgatgcatatttccctgctggaaactggtttgacctcttcaattactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="102366" stop="104180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102666" g_stop="103205" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103536" g_stop="103880" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="885" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E702879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102666" e_stop="103205"/>
          <exon e_start="103536" e_stop="103880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAGGTAAATTCATGCTTGGAGTTTTGTCAACAATGCCGCCTCCAATCTCTCTTTCTCCCCCTAAAGCTTTAACTTTTCACCAATGTTAAATAGCCATGAAATGTGTTGTTTTTCAAGGAACACTGTTGCATTATAAAGTTCAATGAACCAGAGTTATTCGTCGTCTTAAATAGTATGCTTTAAAATTGTGTTTAAGAAAAGTTAAAGCATGTGTCTATCTCTCAGTTTGACCAAATCGTTAGTTTGATACCGTAGAAGAAGAATTTTATCATAATATTAGGAGCTCTCTTCGTCTTTGACTTCTTTGTAATGAGAGAGATTGGCTTTATGCAGCTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTGGTTTGACCTCTTCAATTACTCT</genome_strand>
        <mrna_strand>GTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTGGTTTGACCTCTTCAATTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702836" ref_strand="+" ref_description="SGN-E702836 [FA19DC12]">
      <seq>gtttactatcctgattttctaaatccagctactgaagtattttggagaaatgaaattgagaagttccaggatctcgtaccttttgatggcctgtggcttgacatgaatgaattgtcaaacttcattacttcccctcctacaccatcatccacctttgatgaccctccgtacaagataaacaactctggcgatcacttgcccatcaactatagaacagttccagccacttcaacacattttggtaatacaatagattataatgtccataacctttatggattactagaatctagagccacctatagtgctttggttaatgtcactggtaaaaggccattcattcttgcaagatcaacttttcttggctctggcagatatacgtcacattggactggagacaatgctgctacatggaatgatttggcatactccattcctactatcttgaactttggattgtttggaattccaatggttggagctgatatatgtggtttttcaagtaacactactgaagagctttgccgccgctggattcagcttggagcattctatccatttgcaagagaccactctgctaaggacacaaccccccaagagctctatagttgggattcagttgctgcagcggccaagaaagtccttgggctccgatatcagttacttccgtacttttatatgcttatgtacaaggcacatacaaaagggactcccattgcacgacccctcttcttctctttccctcaagatgccaagacatttgatatcagcacgcagttccttctcggtaaaggtgtcatgatctcacctgtacttaagcaaggagcaacctctgttgatgcatatttccctgctggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="102366" stop="104156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102666" g_stop="103205" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103536" g_stop="103856" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="861" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E702836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102666" e_stop="103205"/>
          <exon e_start="103536" e_stop="103856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAGGTAAATTCATGCTTGGAGTTTTGTCAACAATGCCGCCTCCAATCTCTCTTTCTCCCCCTAAAGCTTTAACTTTTCACCAATGTTAAATAGCCATGAAATGTGTTGTTTTTCAAGGAACACTGTTGCATTATAAAGTTCAATGAACCAGAGTTATTCGTCGTCTTAAATAGTATGCTTTAAAATTGTGTTTAAGAAAAGTTAAAGCATGTGTCTATCTCTCAGTTTGACCAAATCGTTAGTTTGATACCGTAGAAGAAGAATTTTATCATAATATTAGGAGCTCTCTTCGTCTTTGACTTCTTTGTAATGAGAGAGATTGGCTTTATGCAGCTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAAC</genome_strand>
        <mrna_strand>GTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728471" ref_strand="+" ref_description="SGN-E728471 [LA17DG04]">
      <seq>agacaatgctgctacatggaatgatttggcatactccattcctactatcttgaactttggattgtttggaattccaatggttggagctgatatatgtggtttttcaagtaacactactgaagagctttgccgccgctggattcagcttggagcattctatccatttgcaagagaccactctgctaaggacacaaccccccaagagctctatagttgggattcagttgctgcagcggccaagaaagtccttgggctccgatatcagttacttccgtacttttatatgcttatgtacaaggcacatacaaaagggactcccattgcacgacccctcttcttctctttccctcaagatgccaagacatttgatatcagcacgcagttccttctcggtaaaggtgtcatgatctcacctgtacttaagcaaggagcaacctctgttgatgcatatttccctgctggaaactgatcatataaatgtacacgttcgtgaagggaacatattggtcatgcaaggggaagcaatgacaacacaagctgcacagaggactgcattcaaactccttgtcgtgctgagcagcagcgaaaacagcacaggagaactatttgtggacgatgacgatgaggtgcagatgggaagagagggagggaggtggacgttcgttaagtttaacagcaatatcattggcaataaaattgtggttaaatcagaggttgtgaatggacggtacgcgctggatcaaggattggtccttgaaaagatgacattattaggtttggaaaatgtgagaggattgaagagctatgagcttgttggatcacaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="102761" stop="104591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103061" g_stop="103205" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103536" g_stop="103858" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="468" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103859" i_stop="103932" i_length="74">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103933" g_stop="104291" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="827" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E728471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103061" e_stop="103205"/>
          <exon e_start="103536" e_stop="103858"/>
          <exon e_start="103933" e_stop="104291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAGGTAAATTCATGCTTGGAGTTTTGTCAACAATGCCGCCTCCAATCTCTCTTTCTCCCCCTAAAGCTTTAACTTTTCACCAATGTTAAATAGCCATGAAATGTGTTGTTTTTCAAGGAACACTGTTGCATTATAAAGTTCAATGAACCAGAGTTATTCGTCGTCTTAAATAGTATGCTTTAAAATTGTGTTTAAGAAAAGTTAAAGCATGTGTCTATCTCTCAGTTTGACCAAATCGTTAGTTTGATACCGTAGAAGAAGAATTTTATCATAATATTAGGAGCTCTCTTCGTCTTTGACTTCTTTGTAATGAGAGAGATTGGCTTTATGCAGCTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTGGTTTGACCTCTTCAATTACTCTCGCTTCGTGAGTTTGAATCAAGGAACATATCTGACACTTGACGCACCACCAGATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAG</genome_strand>
        <mrna_strand>AGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTG..........................................................................ATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436214" ref_strand="+" ref_description="SGN-E436214 [STM-62-N19]">
      <seq>ttttttttttatcataaattaaactgcattgataaatgaaagaaagtttcatacaacaagcgtatataacttaattcatttgttaagtaatggtgtatagctccaatttgaactctttccctatcaatattgacatccctgagatttccatagtaacaaactgtccactctgcttaagactttccttcattgttgtgttcccttgctggtgtgatccaacaagctcatagctcttcaatcctctcacattttcaaatcccaaaaatgtcaccttttcaaggaccaatccttgatccagcgcatatcgtccattcacaacctctgatttaaccacaattttgttgccaatgatattgctgttaaacttaactaacgtccacctccctccctctcttcccatctgcacctcatcgtcatcgtccacaaatagttctcctgtactgttttcgctgctgctcagcacgacaaggagtttgaatgcagtcctctgagcagcttgtgttgtcattgcttccccttgcatgaccaatatgttcccttcacgaacatgtacatttatatgatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="-" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="104787" stop="103630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104496" g_stop="103930" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="-" ref_id="SGN-E436214" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104496" e_stop="103930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACATAATATCATAAATTAAACGGCATTGAT-AGTGTGAGAAAATTTCATACAGCAAGCTTATATAACACAATTCATTTGTTTAAGTAATGATGTATAGCTCCAATTTGAACTCTTTCCCTATCAGTATTGACATCTCTGAGATTTCCATAGCAACAAACTGTCCACTCTGTTTAAGTTTTTCCTTCATTGTTGTGTTCCCTTGCTGGTGTGATCCAACAAGCTCATAGCTCTTCAATCCTCTCACATTTTCCAAACCTAATAATGTCATCTTTTCAAGGACCAATCCTTGATCCAGCGCGTACCGTCCATTCACAACCTCTGATTTAACCACAATTTTATTGCCAATGATATTGCTGTTAAACTTAACGAACGTCCACCTCCCTCCCTCTCTTCCCATCTGCACCTCATCGTCATCGTCCACAAATAGTTCTCCTGTGCTGTTTTCGCTGCTGCTCAGCACGACAAGGAGTTTGAATGCAGTCCTCTGTGCAGCTTGTGTTGTCATTGCTTCCCCTTGCATGACCAATATGTTCCCTTCACGAACGTGTACATTTATATGATCTG</genome_strand>
        <mrna_strand>TTTTTTTTTTATCATAAATTAAACTGCATTGATAAATGAAAGAAAGTTTCATACAACAAGCGTATATAACTTAATTCATTTG-TTAAGTAATGGTGTATAGCTCCAATTTGAACTCTTTCCCTATCAATATTGACATCCCTGAGATTTCCATAGTAACAAACTGTCCACTCTGCTTAAGACTTTCCTTCATTGTTGTGTTCCCTTGCTGGTGTGATCCAACAAGCTCATAGCTCTTCAATCCTCTCACATTTTCAAATCCCAAAAATGTCACCTTTTCAAGGACCAATCCTTGATCCAGCGCATATCGTCCATTCACAACCTCTGATTTAACCACAATTTTGTTGCCAATGATATTGCTGTTAAACTTAACTAACGTCCACCTCCCTCCCTCTCTTCCCATCTGCACCTCATCGTCATCGTCCACAAATAGTTCTCCTGTACTGTTTTCGCTGCTGCTCAGCACGACAAGGAGTTTGAATGCAGTCCTCTGAGCAGCTTGTGTTGTCATTGCTTCCCCTTGCATGACCAATATGTTCCCTTCACGAACATGTACATTTATATGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="108057" stop="108953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108357" g_stop="108679" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108357" e_stop="108679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCATAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0155C04-YyCAX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0155C04.3" temp_strand="+" temp_description="C02HBa0155C04.3  AC215396.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0155C04 sequenced_by:kribb upload_account_name:korea">
        <position start="108057" stop="108953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108357" g_stop="108662" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0155C04.3" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0155C04.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108357" e_stop="108662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCATAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>75</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9446" PGL_stop="1184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9446" e_stop="9406"/>
            <exon e_start="7169" e_stop="7066"/>
            <exon e_start="6952" e_stop="6787"/>
            <exon e_start="6677" e_stop="6555"/>
            <exon e_start="4140" e_stop="4066"/>
            <exon e_start="2270" e_stop="2129"/>
            <exon e_start="1213" e_stop="1184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.933" e_score="0.976"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.970"/>
          <exon-intron don_prob="0.975" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.978"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="9446" e_stop="9406" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.933">
            <gDNA_intron_boundary i_start="9405" i_stop="7170" i_length="2236"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="7169" e_stop="7066" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7065" i_stop="6953" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="6952" e_stop="6787" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6786" i_stop="6678" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="6677" e_stop="6555" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6554" i_stop="4141" i_length="2414"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4140" e_stop="4066" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4065" i_stop="2271" i_length="1795"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="2270" e_stop="2129" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915"/>
          </intron>
          <exon e_serial="7" e_score="0.933">
            <gDNA_exon_boundary e_start="1213" e_stop="1184" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9446" stop="9406"/>
              <exon start="7169" stop="7066"/>
              <exon start="6952" stop="6787"/>
              <exon start="6677" stop="6555"/>
              <exon start="4140" stop="4066"/>
              <exon start="2270" stop="2129"/>
              <exon start="1213" stop="1184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9446" stop="9406"/>
              <exon start="7169" stop="7066"/>
              <exon start="6952" stop="6787"/>
              <exon start="6677" stop="6555"/>
              <exon start="4140" stop="4066"/>
              <exon start="2270" stop="2133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGAGCTTACATCCACCTCTTGGGAAGCATCGTCTGAAG : ATTATAGAGTTTGTTTCAGTCTTGGTGAGTGTTAGCAGTGAAGCTGCTGAAAAGGAGTTGATTCGGCTTGGTGCTGTTAAACGCATCTTAGAATTGTTTTTTGA : GTATCCATACAACAACTTTTTGCATCATCATGTTGAGACTATAATAATTTCGTGCCTGGAGAGTAAGAATATTCAATTTGTTGACCATCTTCTTAGTGACTGTAATCTTCTCTTGAAAATTCTCGAGGCAGAGAAAAACTCAACGCTTGCTGCTGATCAATCCAAG : CCAACGGCCTCTGTTGAGGGAAGAACCCCACCCAGGATTGGAAACATTGGGCATGTGACGCGAATAGCTAACAAACTTGTTCAACTAGGGAACAATAATAATGGCATACAGTCGCGTCTGCAG : TGAATGGATTGATTGGCAGACAAATATTCTTCAAAAACGGAATGCTGTGGAAAATGTTTTCCAGTGGGCTTGTGG : GAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG</gDNA_template>
            <first_frame> M  G  A  Y  I  H  L  L  G  S  I  V  *  R :   L  *  S  L  F  Q  S  W  *  V  L  A  V  K  L  L  K  R  S  *  F  G  L  V  L  L  N  A  S  *  N  C  F  L   : S  I  H  T  T  T  F  C  I  I  M  L  R  L  *  *  F  R  A  W  R  V  R  I  F  N  L  L  T  I  F  L  V  T  V  I  F  S  *  K  F  S  R  Q  R  K  T  Q  R  L  L  L  I  N  P  S :   Q  R  P  L  L  R  E  E  P  H  P  G  L  E  T  L  G  M  *  R  E  *  L  T  N  L  F  N  *  G  T  I  I  M  A  Y  S  R  V  C  S :   E  W  I  D  W  Q  T  N  I  L  Q  K  R  N  A  V  E  N  V  F  Q  W  A  C  G :   R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E </first_frame>
            <second_frame>  W  E  L  T  S  T  S  W  E  A  S  S  E   : D  Y  R  V  C  F  S  L  G  E  C  *  Q  *  S  C  *  K  G  V  D  S  A  W  C  C  *  T  H  L  R  I  V  F  *  :  V  S  I  Q  Q  L  F  A  S  S  C  *  D  Y  N  N  F  V  P  G  E  *  E  Y  S  I  C  *  P  S  S  *  *  L  *  S  S  L  E  N  S  R  G  R  E  K  L  N  A  C  C  *  S  I  Q   : A  N  G  L  C  *  G  K  N  P  T  Q  D  W  K  H  W  A  C  D  A  N  S  *  Q  T  C  S  T  R  E  Q  *  *  W  H  T  V  A  S  A   : V  N  G  L  I  G  R  Q  I  F  F  K  N  G  M  L  W  K  M  F  S  S  G  L  V   : G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M   </second_frame>
            <third_frame>   G  S  L  H  P  P  L  G  K  H  R  L  K  :  I  I  E  F  V  S  V  L  V  S  V  S  S  E  A  A  E  K  E  L  I  R  L  G  A  V  K  R  I  L  E  L  F  F  E :   Y  P  Y  N  N  F  L  H  H  H  V  E  T  I  I  I  S  C  L  E  S  K  N  I  Q  F  V  D  H  L  L  S  D  C  N  L  L  L  K  I  L  E  A  E  K  N  S  T  L  A  A  D  Q  S  K  :  P  T  A  S  V  E  G  R  T  P  P  R  I  G  N  I  G  H  V  T  R  I  A  N  K  L  V  Q  L  G  N  N  N  N  G  I  Q  S  R  L  Q  :  *  M  D  *  L  A  D  K  Y  S  S  K  T  E  C  C  G  K  C  F  P  V  G  L  W  :  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9444" stop="9406"/>
                    <exon start="7169" stop="7066"/>
                    <exon start="6952" stop="6787"/>
                    <exon start="6677" stop="6555"/>
                    <exon start="4140" stop="4138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLHPPLGKHRLKIIEFVSVLVSVSSEAAEKELIRLGAVKRILELFFEYPYNNFLHHHVETIIISCLESKNIQFVDHLLSDCNLLLKILEAEKNSTLAADQSKPTASVEGRTPPRIGNIGHVTRIANKLVQLGNNNNGIQSRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3155" e_stop="3073"/>
            <exon e_start="2791" e_stop="2129"/>
            <exon e_start="1213" e_stop="1184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.877" acc_prob="0.982" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="3155" e_stop="3073" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3072" i_stop="2792" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="2791" e_stop="2129" e_length="663"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.982">
            <gDNA_intron_boundary i_start="2128" i_stop="1214" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1213" e_stop="1184" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3155" stop="3073"/>
              <exon start="2791" stop="2129"/>
              <exon start="1213" stop="1184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAATACCTTCTTTCAGGAGGCCTCAGGCAGTGGACATTTTTCTTGTTAATTACTCTCTCCATCTCAATTTATGTGGCGGT : GTTTGAGACCACAAGTTTCAAAAGCCTTTCTTTCTTTCTTGCCTCACATAAATTGGGATGCAGAAAGTACGAAATATATAAAGATGTCATTCTTTTTGGAACTGACTAAAAAGGAATGAGTGTCACATAGTTTAGGAAAAAGGGAGTACCATGTTTCATGATATATAACAAATTGTGGGCCTTGAATGTCTCATTTATTCTGTAAAAAGCATTTTGAGTTTCCTAGCCGAATTCCTCTAATGATATTTACCTTACCTTACAAGAAATTCTTGCCGCGATTGAAGGAGAGAATCATGCCCAGATTTGACTGTTCCTCACTTTTGATCGTTTGTGTAAATTTTATAAAAGTACGCCATTTTTTCATTTGAGTTGGACACAACATTTTGAAGAAAATATAATCATTACATCCTTTCTAATACCAATGGTATATTTTCATCTTTTCATTGGATTGATCATGATTGTAGTTTGTTAGTCTTTATACCAGCATAATATTGACTTTTATTTCATGTAACCTCTCTCAGGAGACCCACATCACTGCATGACCGAATGAGGGACAGTGATGATGATGATTATCAAGATAGAGACTATGATGTTGCAGCTCTGGCAAATAACTTAAGCCAGGCCTTCCGCTATGGAATCTATAACAACGATGAACTTGATGAG : GCTCGTGGTTCACTTGAGCGGGATGATGAG</gDNA_template>
            <first_frame> K  E  Y  L  L  S  G  G  L  R  Q  W  T  F  F  L  L  I  T  L  S  I  S  I  Y  V  A  V :   F  E  T  T  S  F  K  S  L  S  F  F  L  A  S  H  K  L  G  C  R  K  Y  E  I  Y  K  D  V  I  L  F  G  T  D  *  K  G  M  S  V  T  *  F  R  K  K  G  V  P  C  F  M  I  Y  N  K  L  W  A  L  N  V  S  F  I  L  *  K  A  F  *  V  S  *  P  N  S  S  N  D  I  Y  L  T  L  Q  E  I  L  A  A  I  E  G  E  N  H  A  Q  I  *  L  F  L  T  F  D  R  L  C  K  F  Y  K  S  T  P  F  F  H  L  S  W  T  Q  H  F  E  E  N  I  I  I  T  S  F  L  I  P  M  V  Y  F  H  L  F  I  G  L  I  M  I  V  V  C  *  S  L  Y  Q  H  N  I  D  F  Y  F  M  *  P  L  S  G  D  P  H  H  C  M  T  E  *  G  T  V  M  M  M  I  I  K  I  E  T  M  M  L  Q  L  W  Q  I  T  *  A  R  P  S  A  M  E  S  I  T  T  M  N  L  M  R :   L  V  V  H  L  S  G  M  M   </first_frame>
            <second_frame>  K  N  T  F  F  Q  E  A  S  G  S  G  H  F  S  C  *  L  L  S  P  S  Q  F  M  W  R   : C  L  R  P  Q  V  S  K  A  F  L  S  F  L  P  H  I  N  W  D  A  E  S  T  K  Y  I  K  M  S  F  F  L  E  L  T  K  K  E  *  V  S  H  S  L  G  K  R  E  Y  H  V  S  *  Y  I  T  N  C  G  P  *  M  S  H  L  F  C  K  K  H  F  E  F  P  S  R  I  P  L  M  I  F  T  L  P  Y  K  K  F  L  P  R  L  K  E  R  I  M  P  R  F  D  C  S  S  L  L  I  V  C  V  N  F  I  K  V  R  H  F  F  I  *  V  G  H  N  I  L  K  K  I  *  S  L  H  P  F  *  Y  Q  W  Y  I  F  I  F  S  L  D  *  S  *  L  *  F  V  S  L  Y  T  S  I  I  L  T  F  I  S  C  N  L  S  Q  E  T  H  I  T  A  *  P  N  E  G  Q  *  *  *  *  L  S  R  *  R  L  *  C  C  S  S  G  K  *  L  K  P  G  L  P  L  W  N  L  *  Q  R  *  T  *  *   : G  S  W  F  T  *  A  G  *  *  </second_frame>
            <third_frame>   R  I  P  S  F  R  R  P  Q  A  V  D  I  F  L  V  N  Y  S  L  H  L  N  L  C  G  G  :  V  *  D  H  K  F  Q  K  P  F  F  L  S  C  L  T  *  I  G  M  Q  K  V  R  N  I  *  R  C  H  S  F  W  N  *  L  K  R  N  E  C  H  I  V  *  E  K  G  S  T  M  F  H  D  I  *  Q  I  V  G  L  E  C  L  I  Y  S  V  K  S  I  L  S  F  L  A  E  F  L  *  *  Y  L  P  Y  L  T  R  N  S  C  R  D  *  R  R  E  S  C  P  D  L  T  V  P  H  F  *  S  F  V  *  I  L  *  K  Y  A  I  F  S  F  E  L  D  T  T  F  *  R  K  Y  N  H  Y  I  L  S  N  T  N  G  I  F  S  S  F  H  W  I  D  H  D  C  S  L  L  V  F  I  P  A  *  Y  *  L  L  F  H  V  T  S  L  R  R  P  T  S  L  H  D  R  M  R  D  S  D  D  D  D  Y  Q  D  R  D  Y  D  V  A  A  L  A  N  N  L  S  Q  A  F  R  Y  G  I  Y  N  N  D  E  L  D  E  :  A  R  G  S  L  E  R  D  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2296" stop="2129"/>
                    <exon start="1213" stop="1184"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHVTSLRRPTSLHDRMRDSDDDDYQDRDYDVAALANNLSQAFRYGIYNNDELDEARGSLERDDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18895" PGL_stop="13393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18895" e_stop="18693"/>
            <exon e_start="15312" e_stop="15209"/>
            <exon e_start="13837" e_stop="13751"/>
            <exon e_start="13607" e_stop="13532"/>
            <exon e_start="13423" e_stop="13393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.970"/>
          <exon-intron don_prob="0.944" acc_prob="0.837" e_score="0.952"/>
          <exon-intron don_prob="0.973" acc_prob="0.964" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.902" e_score="0.961"/>
          <exon-only e_score="0.839"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="18895" e_stop="18693" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18692" i_stop="15313" i_length="3380"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="15312" e_stop="15209" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.837">
            <gDNA_intron_boundary i_start="15208" i_stop="13838" i_length="1371"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="13837" e_stop="13751" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.964">
            <gDNA_intron_boundary i_start="13750" i_stop="13608" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="13607" e_stop="13532" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.902">
            <gDNA_intron_boundary i_start="13531" i_stop="13424" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="0.839">
            <gDNA_exon_boundary e_start="13423" e_stop="13393" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18895" stop="18693"/>
              <exon start="15312" stop="15209"/>
              <exon start="13837" stop="13751"/>
              <exon start="13607" stop="13532"/>
              <exon start="13423" stop="13393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATAACAATTGAACCGAATCCAATCTTATCAAAGACTGCTCCCCACCTTTTTCTAGGGCTTCCTGGGTTCAAGATCATTGTTGGGGTTGTTTTCTTTTTGTTCCTAGATCCAAATTGTTGAAAATTCTCTTCTGGGTCGGTTCTTGATTCTGAAAAAATGGCTATGTTTTGGCGTATGGCTGGCCTCTCCACTGCTTCTCCA : GTGGAGACAATTTTGGATAAGGAAAATTTTGCACTGGATGAGCTCTTGGACGAGGATGAAATAATTCAAGAATGTAAAGCTCTTAATGGACGCCTTATTAACTT : TCTGCGAGAAAGAGCTCAAGTTGAACAACTTGTCAGGTACATAGTGGAAGAGGCTCCAGAAGATGCAGAGAAGAAACGAACTTTTAA : GTTTCCTTTTATTGCTTGTGAAATCTTTACATGCGAGGTGGACATAATTCTTAAAGCATTGGTTGAGAATGAGGAG : CTAATGAACCTGCTATTCTCATTTTTGGAAC</gDNA_template>
            <first_frame> *  *  Q  L  N  R  I  Q  S  Y  Q  R  L  L  P  T  F  F  *  G  F  L  G  S  R  S  L  L  G  L  F  S  F  C  S  *  I  Q  I  V  E  N  S  L  L  G  R  F  L  I  L  K  K  W  L  C  F  G  V  W  L  A  S  P  L  L  L  Q :   W  R  Q  F  W  I  R  K  I  L  H  W  M  S  S  W  T  R  M  K  *  F  K  N  V  K  L  L  M  D  A  L  L  T   : F  C  E  K  E  L  K  L  N  N  L  S  G  T  *  W  K  R  L  Q  K  M  Q  R  R  N  E  L  L   : S  F  L  L  L  L  V  K  S  L  H  A  R  W  T  *  F  L  K  H  W  L  R  M  R  S :   *  *  T  C  Y  S  H  F  W  N </first_frame>
            <second_frame>  D  N  N  *  T  E  S  N  L  I  K  D  C  S  P  P  F  S  R  A  S  W  V  Q  D  H  C  W  G  C  F  L  F  V  P  R  S  K  L  L  K  I  L  F  W  V  G  S  *  F  *  K  N  G  Y  V  L  A  Y  G  W  P  L  H  C  F  S   : S  G  D  N  F  G  *  G  K  F  C  T  G  *  A  L  G  R  G  *  N  N  S  R  M  *  S  S  *  W  T  P  Y  *  L  :  S  A  R  K  S  S  S  *  T  T  C  Q  V  H  S  G  R  G  S  R  R  C  R  E  E  T  N  F  *  :  V  S  F  Y  C  L  *  N  L  Y  M  R  G  G  H  N  S  *  S  I  G  *  E  *  G   : A  N  E  P  A  I  L  I  F  G   </second_frame>
            <third_frame>   I  T  I  E  P  N  P  I  L  S  K  T  A  P  H  L  F  L  G  L  P  G  F  K  I  I  V  G  V  V  F  F  L  F  L  D  P  N  C  *  K  F  S  S  G  S  V  L  D  S  E  K  M  A  M  F  W  R  M  A  G  L  S  T  A  S  P  :  V  E  T  I  L  D  K  E  N  F  A  L  D  E  L  L  D  E  D  E  I  I  Q  E  C  K  A  L  N  G  R  L  I  N  F :   L  R  E  R  A  Q  V  E  Q  L  V  R  Y  I  V  E  E  A  P  E  D  A  E  K  K  R  T  F  K :   F  P  F  I  A  C  E  I  F  T  C  E  V  D  I  I  L  K  A  L  V  E  N  E  E  :  L  M  N  L  L  F  S  F  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18773" stop="18693"/>
                    <exon start="15312" stop="15209"/>
                    <exon start="13837" stop="13751"/>
                    <exon start="13607" stop="13532"/>
                    <exon start="13423" stop="13394"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFSSGSVLDSEKMAMFWRMAGLSTASPVETILDKENFALDELLDEDEIIQECKALNGRLINFLRERAQVEQLVRYIVEEAPEDAEKKRTFKFPFIACEIFTCEVDIILKALVENEELMNLLFSFLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29145" PGL_stop="20551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29145" e_stop="28582"/>
            <exon e_start="27711" e_stop="27375"/>
            <exon e_start="27086" e_stop="26862"/>
            <exon e_start="25018" e_stop="24796"/>
            <exon e_start="24655" e_stop="24480"/>
            <exon e_start="21864" e_stop="21799"/>
            <exon e_start="20870" e_stop="20551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="0.977"/>
          <exon-intron don_prob="0.784" acc_prob="0.997" e_score="0.958"/>
          <exon-intron don_prob="0.925" acc_prob="0.928" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.974" e_score="0.966"/>
          <exon-intron don_prob="0.974" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.862"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="29145" e_stop="28582" e_length="564"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="28581" i_stop="27712" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="27711" e_stop="27375" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.784" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27374" i_stop="27087" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="27086" e_stop="26862" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.928">
            <gDNA_intron_boundary i_start="26861" i_stop="25019" i_length="1843"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25018" e_stop="24796" e_length="223"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24795" i_stop="24656" i_length="140"/>
          </intron>
          <exon e_serial="5" e_score="0.966">
            <gDNA_exon_boundary e_start="24655" e_stop="24480" e_length="176"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.974">
            <gDNA_intron_boundary i_start="24479" i_stop="21865" i_length="2615"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21864" e_stop="21799" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.988">
            <gDNA_intron_boundary i_start="21798" i_stop="20871" i_length="928"/>
          </intron>
          <exon e_serial="7" e_score="0.862">
            <gDNA_exon_boundary e_start="20870" e_stop="20551" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29145" stop="28582"/>
              <exon start="27711" stop="27660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29145" stop="28686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29145" stop="28750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29144" stop="28582"/>
              <exon start="27711" stop="27630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29140" stop="28582"/>
              <exon start="27711" stop="27527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29121" stop="28605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29121" stop="28705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28669" stop="28582"/>
              <exon start="27711" stop="27375"/>
              <exon start="27086" stop="26862"/>
              <exon start="25018" stop="24989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28666" stop="28582"/>
              <exon start="27711" stop="27380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26951" stop="26862"/>
              <exon start="25018" stop="24796"/>
              <exon start="24655" stop="24480"/>
              <exon start="21864" stop="21799"/>
              <exon start="20870" stop="20668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26941" stop="26862"/>
              <exon start="25018" stop="24796"/>
              <exon start="24655" stop="24480"/>
              <exon start="21864" stop="21799"/>
              <exon start="20870" stop="20724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26941" stop="26862"/>
              <exon start="25018" stop="24796"/>
              <exon start="24655" stop="24480"/>
              <exon start="21864" stop="21809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25013" stop="24796"/>
              <exon start="24655" stop="24480"/>
              <exon start="21864" stop="21799"/>
              <exon start="20870" stop="20551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432609" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24935" stop="24796"/>
              <exon start="24655" stop="24480"/>
              <exon start="21864" stop="21799"/>
              <exon start="20870" stop="20560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561397" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACCCTAGTTACTACATTGCTGTTCCTTTGCTTTTATTTCAATATCAGTCCAAATTTGCAACTGATTGTAACATATTTCTGCAAAAGTTGTGAACTTTAAGCTCACAATTGAATCATGAAGAACCTGAAAAAGAAGAAAGCTTCAGCTCAAAACACCCAGAAGGGTAGTAAGAAGAGATTTTCAATTGAAAGCGACCCATTTTTCCATGAAGACAACGACTTGAAAAGGCGAAAGAGATTTGGAGATGATGAAGATATAGAGAGCAGTGATGATTCAGAGGACATTTATGGGTCTGATGATGAAGGAGTGGATAGGAATGAGCGGAAGGATGAAGAAGAGGAAGAGGAGGAGGAGACGGCAGCTGAGAAGAGAAAAAGGCTGGCGGAGACTTTTTTGCATAGTATGAGGGAGTCGAAGAGGAAGGAAGAGGAAGAAAGAGAGAGTGAAGAGGAATATGATAGAGAGGAGAGGGAAGCAATGAGAGACTCATGGATGGTAGACATGTTGCAGAAGGAGCAGATGGAGGGCAGTGGTCGTTCCAGAAAAGCTATTGCTTCCAG : GATTCAAAAACCCACCGAGGGATTTCACCTTTTAGTGAAACATCGACAGTCCGTAACTGCTGTGACTTTATCTGAGGATGACTTAAAGGGATTTTCATCTTCTAAAGATGGCACTATTGTTTGCTGGGACGTGGACAGTGGAAAGACAGAAAAGTATGCATGGCCTACTGATGAAGCTCTGAAGTCACATGGTGCAAAGGACCCACAAGGTCGAGCAACAAAACATAGTAAGAATGTTTTAGCTTTGGCTGTCAGCTCTGATGGACGCTATTTGGCAAGTGGAGGCTTAGATCGTCACGTTCATTTGTGGGACATCCGAACACGGCAGCATATTAAG : GCATTCCCTGGTCATAAGGGACCTGTTTCATGTTTGACATTCAGACAAGGATCTTCTGAACTGTTTTCGGGGTCGTTTGATCGATCCATCAAGATATGGAATGTGGAAGATAGAGCTTATGTAAATACTTTATTTGGTCATCAAAGTGAAGTTCTAACCATTGATTCTTTGAGGAAAGAAAGGGTCTTGACAGTTGGACGAGACCGAACCATGCACTTATGGAAG : GTTCCAGAGGAATCTCAATTGATATTTCGTGCTCCAGCAACTTCCCTTGAATGCTGTTGTTTCATCAATAATGATGAGTTTCTATCTGGTTCTGATGATGGAAGTATTGAGCACTGGAACGTAACAAGGAAGAAGCCTGTCCACATTGTAAAAAATGCACATGCTTCATTGCAATCAGTGGGAATTGAACAGAGCAATGGGGCCCTATCAAATGGCCACATGG : AAAATGGCACACTTAATCCTCAGTGTCATTCCTCATCAGCACTCTCTTGGGTTAGTGCGCTGACAGTCTGCAGAAATAGTGATCTTGCAGCATCAGGAGCTGGCAACGGGTCCGTTCAATTGTGGACTATTGAAAATGAATCAAAAGGCATCTCTCCATTGTTTGAGCTCCCAGTG : GCTGGATTTATAAATTCCTTAGTTTTTTCAAAATCAGGACAGTTCTTGGTTGCTGCAGTAGGGCAG : GAACCTCGCCTAGGAAGGTGGGGGCGTATTGCTGATGTTCGAAATGGAGTTTTTGTGCATCCTTTGAAGCATTCGTGATACTGAGCTTGTTGGTCATTGTCCACTTCGGCTCATGCTAAAAGGAGGAATAGCCTTCTCTGTACTTTCTTGTGAGGTCAATATTTATTTTTATGTTGGCAAAAATTTTGATATATTTTATTCGCTCTTTTCACCTTTGTTCATATTAATTCAGCTACGTAATAGAGAAATACAGAACAATTTTAGTGTATTAATTGAAATTCAAATGATTTCAGTGAGTTTGAAGGTTTTACTTAATACTT</gDNA_template>
            <first_frame> *  N  P  S  Y  Y  I  A  V  P  L  L  L  F  Q  Y  Q  S  K  F  A  T  D  C  N  I  F  L  Q  K  L  *  T  L  S  S  Q  L  N  H  E  E  P  E  K  E  E  S  F  S  S  K  H  P  E  G  *  *  E  E  I  F  N  *  K  R  P  I  F  P  *  R  Q  R  L  E  K  A  K  E  I  W  R  *  *  R  Y  R  E  Q  *  *  F  R  G  H  L  W  V  *  *  *  R  S  G  *  E  *  A  E  G  *  R  R  G  R  G  G  G  D  G  S  *  E  E  K  K  A  G  G  D  F  F  A  *  Y  E  G  V  E  E  E  G  R  G  R  K  R  E  *  R  G  I  *  *  R  G  E  G  S  N  E  R  L  M  D  G  R  H  V  A  E  G  A  D  G  G  Q  W  S  F  Q  K  S  Y  C  F  Q  :  D  S  K  T  H  R  G  I  S  P  F  S  E  T  S  T  V  R  N  C  C  D  F  I  *  G  *  L  K  G  I  F  I  F  *  R  W  H  Y  C  L  L  G  R  G  Q  W  K  D  R  K  V  C  M  A  Y  *  *  S  S  E  V  T  W  C  K  G  P  T  R  S  S  N  K  T  *  *  E  C  F  S  F  G  C  Q  L  *  W  T  L  F  G  K  W  R  L  R  S  S  R  S  F  V  G  H  P  N  T  A  A  Y  *   : G  I  P  W  S  *  G  T  C  F  M  F  D  I  Q  T  R  I  F  *  T  V  F  G  V  V  *  S  I  H  Q  D  M  E  C  G  R  *  S  L  C  K  Y  F  I  W  S  S  K  *  S  S  N  H  *  F  F  E  E  R  K  G  L  D  S  W  T  R  P  N  H  A  L  M  E   : G  S  R  G  I  S  I  D  I  S  C  S  S  N  F  P  *  M  L  L  F  H  Q  *  *  *  V  S  I  W  F  *  *  W  K  Y  *  A  L  E  R  N  K  E  E  A  C  P  H  C  K  K  C  T  C  F  I  A  I  S  G  N  *  T  E  Q  W  G  P  I  K  W  P  H  G :   K  W  H  T  *  S  S  V  S  F  L  I  S  T  L  L  G  *  C  A  D  S  L  Q  K  *  *  S  C  S  I  R  S  W  Q  R  V  R  S  I  V  D  Y  *  K  *  I  K  R  H  L  S  I  V  *  A  P  S   : G  W  I  Y  K  F  L  S  F  F  K  I  R  T  V  L  G  C  C  S  R  A   : G  T  S  P  R  K  V  G  A  Y  C  *  C  S  K  W  S  F  C  A  S  F  E  A  F  V  I  L  S  L  L  V  I  V  H  F  G  S  C  *  K  E  E  *  P  S  L  Y  F  L  V  R  S  I  F  I  F  M  L  A  K  I  L  I  Y  F  I  R  S  F  H  L  C  S  Y  *  F  S  Y  V  I  E  K  Y  R  T  I  L  V  Y  *  L  K  F  K  *  F  Q  *  V  *  R  F  Y  L  I  L </first_frame>
            <second_frame>  K  T  L  V  T  T  L  L  F  L  C  F  Y  F  N  I  S  P  N  L  Q  L  I  V  T  Y  F  C  K  S  C  E  L  *  A  H  N  *  I  M  K  N  L  K  K  K  K  A  S  A  Q  N  T  Q  K  G  S  K  K  R  F  S  I  E  S  D  P  F  F  H  E  D  N  D  L  K  R  R  K  R  F  G  D  D  E  D  I  E  S  S  D  D  S  E  D  I  Y  G  S  D  D  E  G  V  D  R  N  E  R  K  D  E  E  E  E  E  E  E  E  T  A  A  E  K  R  K  R  L  A  E  T  F  L  H  S  M  R  E  S  K  R  K  E  E  E  E  R  E  S  E  E  E  Y  D  R  E  E  R  E  A  M  R  D  S  W  M  V  D  M  L  Q  K  E  Q  M  E  G  S  G  R  S  R  K  A  I  A  S  R :   I  Q  K  P  T  E  G  F  H  L  L  V  K  H  R  Q  S  V  T  A  V  T  L  S  E  D  D  L  K  G  F  S  S  S  K  D  G  T  I  V  C  W  D  V  D  S  G  K  T  E  K  Y  A  W  P  T  D  E  A  L  K  S  H  G  A  K  D  P  Q  G  R  A  T  K  H  S  K  N  V  L  A  L  A  V  S  S  D  G  R  Y  L  A  S  G  G  L  D  R  H  V  H  L  W  D  I  R  T  R  Q  H  I  K  :  A  F  P  G  H  K  G  P  V  S  C  L  T  F  R  Q  G  S  S  E  L  F  S  G  S  F  D  R  S  I  K  I  W  N  V  E  D  R  A  Y  V  N  T  L  F  G  H  Q  S  E  V  L  T  I  D  S  L  R  K  E  R  V  L  T  V  G  R  D  R  T  M  H  L  W  K  :  V  P  E  E  S  Q  L  I  F  R  A  P  A  T  S  L  E  C  C  C  F  I  N  N  D  E  F  L  S  G  S  D  D  G  S  I  E  H  W  N  V  T  R  K  K  P  V  H  I  V  K  N  A  H  A  S  L  Q  S  V  G  I  E  Q  S  N  G  A  L  S  N  G  H  M   : E  N  G  T  L  N  P  Q  C  H  S  S  S  A  L  S  W  V  S  A  L  T  V  C  R  N  S  D  L  A  A  S  G  A  G  N  G  S  V  Q  L  W  T  I  E  N  E  S  K  G  I  S  P  L  F  E  L  P  V  :  A  G  F  I  N  S  L  V  F  S  K  S  G  Q  F  L  V  A  A  V  G  Q  :  E  P  R  L  G  R  W  G  R  I  A  D  V  R  N  G  V  F  V  H  P  L  K  H  S  *  Y  *  A  C  W  S  L  S  T  S  A  H  A  K  R  R  N  S  L  L  C  T  F  L  *  G  Q  Y  L  F  L  C  W  Q  K  F  *  Y  I  L  F  A  L  F  T  F  V  H  I  N  S  A  T  *  *  R  N  T  E  Q  F  *  C  I  N  *  N  S  N  D  F  S  E  F  E  G  F  T  *  Y   </second_frame>
            <third_frame>   K  P  *  L  L  H  C  C  S  F  A  F  I  S  I  S  V  Q  I  C  N  *  L  *  H  I  S  A  K  V  V  N  F  K  L  T  I  E  S  *  R  T  *  K  R  R  K  L  Q  L  K  T  P  R  R  V  V  R  R  D  F  Q  L  K  A  T  H  F  S  M  K  T  T  T  *  K  G  E  R  D  L  E  M  M  K  I  *  R  A  V  M  I  Q  R  T  F  M  G  L  M  M  K  E  W  I  G  M  S  G  R  M  K  K  R  K  R  R  R  R  R  Q  L  R  R  E  K  G  W  R  R  L  F  C  I  V  *  G  S  R  R  G  R  K  R  K  K  E  R  V  K  R  N  M  I  E  R  R  G  K  Q  *  E  T  H  G  W  *  T  C  C  R  R  S  R  W  R  A  V  V  V  P  E  K  L  L  L  P   : G  F  K  N  P  P  R  D  F  T  F  *  *  N  I  D  S  P  *  L  L  *  L  Y  L  R  M  T  *  R  D  F  H  L  L  K  M  A  L  L  F  A  G  T  W  T  V  E  R  Q  K  S  M  H  G  L  L  M  K  L  *  S  H  M  V  Q  R  T  H  K  V  E  Q  Q  N  I  V  R  M  F  *  L  W  L  S  A  L  M  D  A  I  W  Q  V  E  A  *  I  V  T  F  I  C  G  T  S  E  H  G  S  I  L  R :   H  S  L  V  I  R  D  L  F  H  V  *  H  S  D  K  D  L  L  N  C  F  R  G  R  L  I  D  P  S  R  Y  G  M  W  K  I  E  L  M  *  I  L  Y  L  V  I  K  V  K  F  *  P  L  I  L  *  G  K  K  G  S  *  Q  L  D  E  T  E  P  C  T  Y  G  R :   F  Q  R  N  L  N  *  Y  F  V  L  Q  Q  L  P  L  N  A  V  V  S  S  I  M  M  S  F  Y  L  V  L  M  M  E  V  L  S  T  G  T  *  Q  G  R  S  L  S  T  L  *  K  M  H  M  L  H  C  N  Q  W  E  L  N  R  A  M  G  P  Y  Q  M  A  T  W  :  K  M  A  H  L  I  L  S  V  I  P  H  Q  H  S  L  G  L  V  R  *  Q  S  A  E  I  V  I  L  Q  H  Q  E  L  A  T  G  P  F  N  C  G  L  L  K  M  N  Q  K  A  S  L  H  C  L  S  S  Q  W :   L  D  L  *  I  P  *  F  F  Q  N  Q  D  S  S  W  L  L  Q  *  G  R :   N  L  A  *  E  G  G  G  V  L  L  M  F  E  M  E  F  L  C  I  L  *  S  I  R  D  T  E  L  V  G  H  C  P  L  R  L  M  L  K  G  G  I  A  F  S  V  L  S  C  E  V  N  I  Y  F  Y  V  G  K  N  F  D  I  F  Y  S  L  F  S  P  L  F  I  L  I  Q  L  R  N  R  E  I  Q  N  N  F  S  V  L  I  E  I  Q  M  I  S  V  S  L  K  V  L  L  N  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29030" stop="28582"/>
                    <exon start="27711" stop="27375"/>
                    <exon start="27086" stop="26862"/>
                    <exon start="25018" stop="24796"/>
                    <exon start="24655" stop="24480"/>
                    <exon start="21864" stop="21799"/>
                    <exon start="20870" stop="20793"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMKNLKKKKASAQNTQKGSKKRFSIESDPFFHEDNDLKRRKRFGDDEDIESSDDSEDIYGSDDEGVDRNERKDEEEEEEEETAAEKRKRLAETFLHSMRESKRKEEEERESEEEYDREEREAMRDSWMVDMLQKEQMEGSGRSRKAIASRIQKPTEGFHLLVKHRQSVTAVTLSEDDLKGFSSSKDGTIVCWDVDSGKTEKYAWPTDEALKSHGAKDPQGRATKHSKNVLALAVSSDGRYLASGGLDRHVHLWDIRTRQHIKAFPGHKGPVSCLTFRQGSSELFSGSFDRSIKIWNVEDRAYVNTLFGHQSEVLTIDSLRKERVLTVGRDRTMHLWKVPEESQLIFRAPATSLECCCFINNDEFLSGSDDGSIEHWNVTRKKPVHIVKNAHASLQSVGIEQSNGALSNGHMENGTLNPQCHSSSALSWVSALTVCRNSDLAASGAGNGSVQLWTIENESKGISPLFELPVAGFINSLVFSKSGQFLVAAVGQEPRLGRWGRIADVRNGVFVHPLKHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20803" stop="20552"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRDTELVGHCPLRLMLKGGIAFSVLSCEVNIYFYVGKNFDIFYSLFSPLFILIQLRNREIQNNFSVLIEIQMISVSLKVLLNT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20668" PGL_stop="20824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20668" e_stop="20824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="20668" e_stop="20824" e_length="157"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20668" stop="20824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATAAAATATATCAAAATTTTTGCCAACATAAAAATAAATATTGACCTCACAAGAAAGTACAGAGAAGGCTATTCCTCCTTTTAGCATGAGCCGAAGTGGACAATGACCAACAAGCTCAGTATCACGAATGCTTCAAAGGATGCACAAAAACTC</gDNA_template>
            <first_frame> A  N  K  I  Y  Q  N  F  C  Q  H  K  N  K  Y  *  P  H  K  K  V  Q  R  R  L  F  L  L  L  A  *  A  E  V  D  N  D  Q  Q  A  Q  Y  H  E  C  F  K  G  C  T  K  T  </first_frame>
            <second_frame>  R  I  K  Y  I  K  I  F  A  N  I  K  I  N  I  D  L  T  R  K  Y  R  E  G  Y  S  S  F  *  H  E  P  K  W  T  M  T  N  K  L  S  I  T  N  A  S  K  D  A  Q  K  L </second_frame>
            <third_frame>   E  *  N  I  S  K  F  L  P  T  *  K  *  I  L  T  S  Q  E  S  T  E  K  A  I  P  P  F  S  M  S  R  S  G  Q  *  P  T  S  S  V  S  R  M  L  Q  R  M  H  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155C04.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29563" PGL_stop="29982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29563" e_stop="29982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="29563" e_stop="29982" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29563" stop="29982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATATACTTCTGTTGTTTAAAGCTAGAGAAAATTATATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGACCTTTTTCTCTATAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGACGCTGGAAAATTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTATTTTAGTTTATTAG</gDNA_template>
            <first_frame> C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  D  L  F  L  Y  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  *  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  K  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  I  L  V  Y  * </first_frame>
            <second_frame>  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  I  L  L  L  F  K  A  R  E  N  Y  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  I  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  T  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  F  *  F  I   </second_frame>
            <third_frame>   Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  Y  F  C  C  L  K  L  E  K  I  I  F  H  C  N  C  I  I  R  N  C  I  I  R  *  P  F  S  L  *  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  M  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  S  G  R  E  T  L  E  N  F  S  *  R  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  Y  F  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29764" stop="29982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYIFLHVYIQFSLALYKTETELYTSVYKAREASENGEWRARFLGERRWKILANVCYGAQLNQTLAIPFILVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="48382" PGL_stop="49064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48382" e_stop="49064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48382" e_stop="49064" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48382" stop="49064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48382" stop="49037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48382" stop="49027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACATTGAGCTATCATACTGTTGTTTTGAGTCCTTCAAGGTGCTTGCTAATAATTATCTAGACGTTACGTCTCATGATGATTACTTTCCTGAGATTCATCGTTTATTAGGGGAAACTAATATAACTCCAGCTGATGTTGCTGAGAGTTTGATGCCCAAGTCTTCTAAGGAAAATGCAGATACTTGCTTGGAGAGGTTAGTTAAAGCTATTGAAACAGCAAAGGTGGAAGCAAAATTGAAGGCTGAGGAAGAAAAGGCAGAGAAGGAGAAGGAAGAGAACGAGAACGAAAAGAAAAAGAAAGAAGCAGCAGCTGCTGCAGAAGACGCGAAAAGGGCTGATGATGTGAACGAAAATGGGACGTCGATGGAGACTAAGGAAAAGCCAGAAAGTGATGGTGCTAAGGAAAATTGCAAGTCTGAGATAGTAATGGACTAATGATGATGTTAGTAAAGGGTTAGTAAAGTTTGATCATGGAAATATTTGATCAATTAGGTGTTGCCCATAGAACCAGGATTCAGATATTTTGAATAATTTTGTTGTTGAACATTGTTGATTTTGTTATTCAAGAGATACTATGATGATGTAGGAAGTGGTTGTTGCATAATACATAGTGTAGTATCTTATCTTTTTGTGTAACAAAATATTTACATCTTAGTAACTTGGTGATATATGTCAATTTCCT</gDNA_template>
            <first_frame> T  H  *  A  I  I  L  L  F  *  V  L  Q  G  A  C  *  *  L  S  R  R  Y  V  S  *  *  L  L  S  *  D  S  S  F  I  R  G  N  *  Y  N  S  S  *  C  C  *  E  F  D  A  Q  V  F  *  G  K  C  R  Y  L  L  G  E  V  S  *  S  Y  *  N  S  K  G  G  S  K  I  E  G  *  G  R  K  G  R  E  G  E  G  R  E  R  E  R  K  E  K  E  R  S  S  S  C  C  R  R  R  E  K  G  *  *  C  E  R  K  W  D  V  D  G  D  *  G  K  A  R  K  *  W  C  *  G  K  L  Q  V  *  D  S  N  G  L  M  M  M  L  V  K  G  *  *  S  L  I  M  E  I  F  D  Q  L  G  V  A  H  R  T  R  I  Q  I  F  *  I  I  L  L  L  N  I  V  D  F  V  I  Q  E  I  L  *  *  C  R  K  W  L  L  H  N  T  *  C  S  I  L  S  F  C  V  T  K  Y  L  H  L  S  N  L  V  I  Y  V  N  F   </first_frame>
            <second_frame>  H  I  E  L  S  Y  C  C  F  E  S  F  K  V  L  A  N  N  Y  L  D  V  T  S  H  D  D  Y  F  P  E  I  H  R  L  L  G  E  T  N  I  T  P  A  D  V  A  E  S  L  M  P  K  S  S  K  E  N  A  D  T  C  L  E  R  L  V  K  A  I  E  T  A  K  V  E  A  K  L  K  A  E  E  E  K  A  E  K  E  K  E  E  N  E  N  E  K  K  K  K  E  A  A  A  A  A  E  D  A  K  R  A  D  D  V  N  E  N  G  T  S  M  E  T  K  E  K  P  E  S  D  G  A  K  E  N  C  K  S  E  I  V  M  D  *  *  *  C  *  *  R  V  S  K  V  *  S  W  K  Y  L  I  N  *  V  L  P  I  E  P  G  F  R  Y  F  E  *  F  C  C  *  T  L  L  I  L  L  F  K  R  Y  Y  D  D  V  G  S  G  C  C  I  I  H  S  V  V  S  Y  L  F  V  *  Q  N  I  Y  I  L  V  T  W  *  Y  M  S  I  S  </second_frame>
            <third_frame>   T  L  S  Y  H  T  V  V  L  S  P  S  R  C  L  L  I  I  I  *  T  L  R  L  M  M  I  T  F  L  R  F  I  V  Y  *  G  K  L  I  *  L  Q  L  M  L  L  R  V  *  C  P  S  L  L  R  K  M  Q  I  L  A  W  R  G  *  L  K  L  L  K  Q  Q  R  W  K  Q  N  *  R  L  R  K  K  R  Q  R  R  R  R  K  R  T  R  T  K  R  K  R  K  K  Q  Q  L  L  Q  K  T  R  K  G  L  M  M  *  T  K  M  G  R  R  W  R  L  R  K  S  Q  K  V  M  V  L  R  K  I  A  S  L  R  *  *  W  T  N  D  D  V  S  K  G  L  V  K  F  D  H  G  N  I  *  S  I  R  C  C  P  *  N  Q  D  S  D  I  L  N  N  F  V  V  E  H  C  *  F  C  Y  S  R  D  T  M  M  M  *  E  V  V  V  A  *  Y  I  V  *  Y  L  I  F  L  C  N  K  I  F  T  S  *  *  L  G  D  I  C  Q  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48383" stop="48817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIELSYCCFESFKVLANNYLDVTSHDDYFPEIHRLLGETNITPADVAESLMPKSSKENADTCLERLVKAIETAKVEAKLKAEEEKAEKEKEENENEKKKKEAAAAAEDAKRADDVNENGTSMETKEKPESDGAKENCKSEIVMD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49799" PGL_stop="54200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49799" e_stop="50187"/>
            <exon e_start="53203" e_stop="53324"/>
            <exon e_start="53429" e_stop="53624"/>
            <exon e_start="54122" e_stop="54200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49799" e_stop="50187" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.966">
            <gDNA_intron_boundary i_start="50188" i_stop="53202" i_length="3015"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53203" e_stop="53324" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53325" i_stop="53428" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53429" e_stop="53624" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.751" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53625" i_stop="54121" i_length="497"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54122" e_stop="54200" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49799" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49812" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49812" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49813" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49869" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53624"/>
              <exon start="54122" stop="54196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49968" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53624"/>
              <exon start="54122" stop="54200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50003" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50006" stop="50187"/>
              <exon start="53203" stop="53324"/>
              <exon start="53429" stop="53624"/>
              <exon start="54122" stop="54191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATTTCGCAGGCATTTGATTGCATGTGATTCCATGGAAAATTCAAAATCAGTGAACAAGGAGGACGTGATTCCTGAAGAAGCGAAGGTGAAATTGAAGAAATTGGCGTCAGAATGGGACGATATAGTGGATCCGAATGCATTAGATGTGTTCAGATTGAAGGGCGCGATGACGAACGAGGTGTATCAAATCAAATGGCCCAGTAAGAACCCGGAAAAGCAACGATCTAGGAAGGTGTTGGTGAGGATCTATGGGAAAGGTGTTGATGTGTTCTTTGATCGGCAGAATGAAATTAAGATTTTTGAGTTTATGTCTAAGCAAGGCCAAGGACCTCGCTTGCTTGGTCGATTTCAGAGTGGTCGTATTGAGGAATTCATTCGAGCTCGG : ACATTATCAGCTCCTGATCTGCGTGATCCAGAGATATCTTCCTTGATAGCTGCCAAAATGAGAGAATTTCATGTGCTTGATATGCCTGGTCCTAAGACCGTCATCCTCTGGGATAGACTGCA : AAATTGGCTTAATGTAGCCAAAGGTCTGGCTTCTACTGAAGAAGCTAAGGACTTTAAGTTGGACCTTCTAAAAGATGAGATTGTATTGTTGGAAAAGAATCTTGCTGGCAATCATCTAAGCACGGGATGCTGCCACAACGACTTGCAGTATGGGAACATAATGATGGATGAAGAGACAAGATCAATAACCTTTATT : GACTATGAATATGCTGGTTACAACCATGTTGCATTTGATATAGCAAATCATTTTTGTGAAATGGTTGCTGACTACCATA</gDNA_template>
            <first_frame> K  H  F  A  G  I  *  L  H  V  I  P  W  K  I  Q  N  Q  *  T  R  R  T  *  F  L  K  K  R  R  *  N  *  R  N  W  R  Q  N  G  T  I  *  W  I  R  M  H  *  M  C  S  D  *  R  A  R  *  R  T  R  C  I  K  S  N  G  P  V  R  T  R  K  S  N  D  L  G  R  C  W  *  G  S  M  G  K  V  L  M  C  S  L  I  G  R  M  K  L  R  F  L  S  L  C  L  S  K  A  K  D  L  A  C  L  V  D  F  R  V  V  V  L  R  N  S  F  E  L  G :   H  Y  Q  L  L  I  C  V  I  Q  R  Y  L  P  *  *  L  P  K  *  E  N  F  M  C  L  I  C  L  V  L  R  P  S  S  S  G  I  D  C   : K  I  G  L  M  *  P  K  V  W  L  L  L  K  K  L  R  T  L  S  W  T  F  *  K  M  R  L  Y  C  W  K  R  I  L  L  A  I  I  *  A  R  D  A  A  T  T  T  C  S  M  G  T  *  *  W  M  K  R  Q  D  Q  *  P  L  L :   T  M  N  M  L  V  T  T  M  L  H  L  I  *  Q  I  I  F  V  K  W  L  L  T  T  I </first_frame>
            <second_frame>  N  I  S  Q  A  F  D  C  M  *  F  H  G  K  F  K  I  S  E  Q  G  G  R  D  S  *  R  S  E  G  E  I  E  E  I  G  V  R  M  G  R  Y  S  G  S  E  C  I  R  C  V  Q  I  E  G  R  D  D  E  R  G  V  S  N  Q  M  A  Q  *  E  P  G  K  A  T  I  *  E  G  V  G  E  D  L  W  E  R  C  *  C  V  L  *  S  A  E  *  N  *  D  F  *  V  Y  V  *  A  R  P  R  T  S  L  A  W  S  I  S  E  W  S  Y  *  G  I  H  S  S  S   : D  I  I  S  S  *  S  A  *  S  R  D  I  F  L  D  S  C  Q  N  E  R  I  S  C  A  *  Y  A  W  S  *  D  R  H  P  L  G  *  T  A  :  K  L  A  *  C  S  Q  R  S  G  F  Y  *  R  S  *  G  L  *  V  G  P  S  K  R  *  D  C  I  V  G  K  E  S  C  W  Q  S  S  K  H  G  M  L  P  Q  R  L  A  V  W  E  H  N  D  G  *  R  D  K  I  N  N  L  Y   : *  L  *  I  C  W  L  Q  P  C  C  I  *  Y  S  K  S  F  L  *  N  G  C  *  L  P   </second_frame>
            <third_frame>   T  F  R  R  H  L  I  A  C  D  S  M  E  N  S  K  S  V  N  K  E  D  V  I  P  E  E  A  K  V  K  L  K  K  L  A  S  E  W  D  D  I  V  D  P  N  A  L  D  V  F  R  L  K  G  A  M  T  N  E  V  Y  Q  I  K  W  P  S  K  N  P  E  K  Q  R  S  R  K  V  L  V  R  I  Y  G  K  G  V  D  V  F  F  D  R  Q  N  E  I  K  I  F  E  F  M  S  K  Q  G  Q  G  P  R  L  L  G  R  F  Q  S  G  R  I  E  E  F  I  R  A  R  :  T  L  S  A  P  D  L  R  D  P  E  I  S  S  L  I  A  A  K  M  R  E  F  H  V  L  D  M  P  G  P  K  T  V  I  L  W  D  R  L  Q :   N  W  L  N  V  A  K  G  L  A  S  T  E  E  A  K  D  F  K  L  D  L  L  K  D  E  I  V  L  L  E  K  N  L  A  G  N  H  L  S  T  G  C  C  H  N  D  L  Q  Y  G  N  I  M  M  D  E  E  T  R  S  I  T  F  I  :  D  Y  E  Y  A  G  Y  N  H  V  A  F  D  I  A  N  H  F  C  E  M  V  A  D  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49801" stop="50187"/>
                    <exon start="53203" stop="53324"/>
                    <exon start="53429" stop="53624"/>
                    <exon start="54122" stop="54199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFRRHLIACDSMENSKSVNKEDVIPEEAKVKLKKLASEWDDIVDPNALDVFRLKGAMTNEVYQIKWPSKNPEKQRSRKVLVRIYGKGVDVFFDRQNEIKIFEFMSKQGQGPRLLGRFQSGRIEEFIRARTLSAPDLRDPEISSLIAAKMREFHVLDMPGPKTVILWDRLQNWLNVAKGLASTEEAKDFKLDLLKDEIVLLEKNLAGNHLSTGCCHNDLQYGNIMMDEETRSITFIDYEYAGYNHVAFDIANHFCEMVADYH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="54562" PGL_stop="55045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54562" e_stop="55045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54562" e_stop="55045" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54562" stop="55045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTTATTTCATTACGAATCTCAGATGTATTGGTCTGGTAAACAGGTCGCTCTCCCAGTGAACCGGAACTGGAGAAATTAGTTCAAGAAGTGGAGAAGTATACTCTTGCCAGTCATCTTTTTTGGGGTCTATGGGGAATAATATCGGTACTTCTCCTGACCTTATATATTCTGTCATGATAAGAGTAGTTATGAGCTGCGTACACAAAAAGAACAGTGAATAGTCTAAGTAGGAACTTGGAACTACCTAGTCTTTAACTGTAGAAAACTTTATATTGAAAGTCCGTCAACAATTAATAGATACATGGTTTGCCGCATTTTGTGCCCAAGCCATAACAGATTTGGCTCTTTTTCTACCTTTTTTGCCTTCGACAACAATGTTGTTATTGAGCTGCATAGGCCTTTCTTAACATCCTTCATTTCCTCCCCTTTTTCAGCATCATGTCAATAAGATAGACTTCGATTACTTGGGGTATGCTAGGC</gDNA_template>
            <first_frame> Y  L  Y  F  I  T  N  L  R  C  I  G  L  V  N  R  S  L  S  Q  *  T  G  T  G  E  I  S  S  R  S  G  E  V  Y  S  C  Q  S  S  F  L  G  S  M  G  N  N  I  G  T  S  P  D  L  I  Y  S  V  M  I  R  V  V  M  S  C  V  H  K  K  N  S  E  *  S  K  *  E  L  G  T  T  *  S  L  T  V  E  N  F  I  L  K  V  R  Q  Q  L  I  D  T  W  F  A  A  F  C  A  Q  A  I  T  D  L  A  L  F  L  P  F  L  P  S  T  T  M  L  L  L  S  C  I  G  L  S  *  H  P  S  F  P  P  L  F  Q  H  H  V  N  K  I  D  F  D  Y  L  G  Y  A  R  </first_frame>
            <second_frame>  I  F  I  S  L  R  I  S  D  V  L  V  W  *  T  G  R  S  P  S  E  P  E  L  E  K  L  V  Q  E  V  E  K  Y  T  L  A  S  H  L  F  W  G  L  W  G  I  I  S  V  L  L  L  T  L  Y  I  L  S  *  *  E  *  L  *  A  A  Y  T  K  R  T  V  N  S  L  S  R  N  L  E  L  P  S  L  *  L  *  K  T  L  Y  *  K  S  V  N  N  *  *  I  H  G  L  P  H  F  V  P  K  P  *  Q  I  W  L  F  F  Y  L  F  C  L  R  Q  Q  C  C  Y  *  A  A  *  A  F  L  N  I  L  H  F  L  P  F  F  S  I  M  S  I  R  *  T  S  I  T  W  G  M  L  G </second_frame>
            <third_frame>   S  L  F  H  Y  E  S  Q  M  Y  W  S  G  K  Q  V  A  L  P  V  N  R  N  W  R  N  *  F  K  K  W  R  S  I  L  L  P  V  I  F  F  G  V  Y  G  E  *  Y  R  Y  F  S  *  P  Y  I  F  C  H  D  K  S  S  Y  E  L  R  T  Q  K  E  Q  *  I  V  *  V  G  T  W  N  Y  L  V  F  N  C  R  K  L  Y  I  E  S  P  S  T  I  N  R  Y  M  V  C  R  I  L  C  P  S  H  N  R  F  G  S  F  S  T  F  F  A  F  D  N  N  V  V  I  E  L  H  R  P  F  L  T  S  F  I  S  S  P  F  S  A  S  C  Q  *  D  R  L  R  L  L  G  V  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54792" stop="55013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGTWNYLVFNCRKLYIESPSTINRYMVCRILCPSHNRFGSFSTFFAFDNNVVIELHRPFLTSFISSPFSASCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="58846" PGL_stop="57103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58846" e_stop="58591"/>
            <exon e_start="58484" e_stop="58381"/>
            <exon e_start="57887" e_stop="57687"/>
            <exon e_start="57309" e_stop="57103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.749" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58846" e_stop="58591" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58590" i_stop="58485" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58484" e_stop="58381" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58380" i_stop="57888" i_length="493"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57887" e_stop="57687" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.749">
            <gDNA_intron_boundary i_start="57686" i_stop="57310" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="57309" e_stop="57103" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58846" stop="58591"/>
              <exon start="58484" stop="58381"/>
              <exon start="57887" stop="57687"/>
              <exon start="57309" stop="57103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAGTGCAGCTCATGCTCTGATGATGCAACCACCTCGTATGCTTCGAATCACAGTAGTGGCAAGAAGTTATTTGGGGTTGATCTTTCCAGGGGTTCTCCTAGTGTTCAACAAAACGGAACATTTGACTCAGAAATAGATCCCCTGAGCACCAAGGTTTCAGAACGAACGCTTTTGTACCATGTTGACCCTCTAAAGTTAGGGTCAATCGCCTCAGGAAAGCTTTGGTGCAGTAAGCAGGCAATATTCCCCATAG : GATTTAGAAGTCGTGTTAAGTTCTTCGATGCCAGCAGTCCTGAGATAACTAGTAGCTATATATGCGAGATCCTGAATGGTGGGCTCATTGGACCTCTATTCAAG : GTTAGCTTAGAAGAGTGTCCAGATACGAACTTAGTGAGTTCATCAGCGCAGAAATGCTGGGAAATGATCTCGCATAGAGTCTTTGAAGAACTAGCAACGAAGTTAAATCCAGGAAGGCAAGATTTGCCACCATTGCAACCTGACACAGAATGCATCAACGGTCTCGGAATGTTTGGGTTACTCTCCCCACCGATAGTTCAG : TCCATTGAAGCTCTTGATACAAACTATCAATGTCTGGAGTACTGGAAAAACAAGCTAAAACTCAAGGACGAGTGTGTAACTGTCAAAGGGCCTTCAGGTTCATCGGAGAGTACTGTTGACATGGCAAGATCTGCTGTGATGGAAAGAGGTCAGTGTTCGGGAACCAAGGTGGCTACTGAGGAGGAACATGCTAACTATAGTTCATCT</gDNA_template>
            <first_frame> K  Q  C  S  S  C  S  D  D  A  T  T  S  Y  A  S  N  H  S  S  G  K  K  L  F  G  V  D  L  S  R  G  S  P  S  V  Q  Q  N  G  T  F  D  S  E  I  D  P  L  S  T  K  V  S  E  R  T  L  L  Y  H  V  D  P  L  K  L  G  S  I  A  S  G  K  L  W  C  S  K  Q  A  I  F  P  I   : G  F  R  S  R  V  K  F  F  D  A  S  S  P  E  I  T  S  S  Y  I  C  E  I  L  N  G  G  L  I  G  P  L  F  K  :  V  S  L  E  E  C  P  D  T  N  L  V  S  S  S  A  Q  K  C  W  E  M  I  S  H  R  V  F  E  E  L  A  T  K  L  N  P  G  R  Q  D  L  P  P  L  Q  P  D  T  E  C  I  N  G  L  G  M  F  G  L  L  S  P  P  I  V  Q  :  S  I  E  A  L  D  T  N  Y  Q  C  L  E  Y  W  K  N  K  L  K  L  K  D  E  C  V  T  V  K  G  P  S  G  S  S  E  S  T  V  D  M  A  R  S  A  V  M  E  R  G  Q  C  S  G  T  K  V  A  T  E  E  E  H  A  N  Y  S  S  S </first_frame>
            <second_frame>  S  S  A  A  H  A  L  M  M  Q  P  P  R  M  L  R  I  T  V  V  A  R  S  Y  L  G  L  I  F  P  G  V  L  L  V  F  N  K  T  E  H  L  T  Q  K  *  I  P  *  A  P  R  F  Q  N  E  R  F  C  T  M  L  T  L  *  S  *  G  Q  S  P  Q  E  S  F  G  A  V  S  R  Q  Y  S  P  *  :  D  L  E  V  V  L  S  S  S  M  P  A  V  L  R  *  L  V  A  I  Y  A  R  S  *  M  V  G  S  L  D  L  Y  S  R :   L  A  *  K  S  V  Q  I  R  T  *  *  V  H  Q  R  R  N  A  G  K  *  S  R  I  E  S  L  K  N  *  Q  R  S  *  I  Q  E  G  K  I  C  H  H  C  N  L  T  Q  N  A  S  T  V  S  E  C  L  G  Y  S  P  H  R  *  F  S :   P  L  K  L  L  I  Q  T  I  N  V  W  S  T  G  K  T  S  *  N  S  R  T  S  V  *  L  S  K  G  L  Q  V  H  R  R  V  L  L  T  W  Q  D  L  L  *  W  K  E  V  S  V  R  E  P  R  W  L  L  R  R  N  M  L  T  I  V  H   </second_frame>
            <third_frame>   A  V  Q  L  M  L  *  *  C  N  H  L  V  C  F  E  S  Q  *  W  Q  E  V  I  W  G  *  S  F  Q  G  F  S  *  C  S  T  K  R  N  I  *  L  R  N  R  S  P  E  H  Q  G  F  R  T  N  A  F  V  P  C  *  P  S  K  V  R  V  N  R  L  R  K  A  L  V  Q  *  A  G  N  I  P  H  R :   I  *  K  S  C  *  V  L  R  C  Q  Q  S  *  D  N  *  *  L  Y  M  R  D  P  E  W  W  A  H  W  T  S  I  Q   : G  *  L  R  R  V  S  R  Y  E  L  S  E  F  I  S  A  E  M  L  G  N  D  L  A  *  S  L  *  R  T  S  N  E  V  K  S  R  K  A  R  F  A  T  I  A  T  *  H  R  M  H  Q  R  S  R  N  V  W  V  T  L  P  T  D  S  S   : V  H  *  S  S  *  Y  K  L  S  M  S  G  V  L  E  K  Q  A  K  T  Q  G  R  V  C  N  C  Q  R  A  F  R  F  I  G  E  Y  C  *  H  G  K  I  C  C  D  G  K  R  S  V  F  G  N  Q  G  G  Y  *  G  G  T  C  *  L  *  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58846" stop="58591"/>
                    <exon start="58484" stop="58381"/>
                    <exon start="57887" stop="57687"/>
                    <exon start="57309" stop="57103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQCSSCSDDATTSYASNHSSGKKLFGVDLSRGSPSVQQNGTFDSEIDPLSTKVSERTLLYHVDPLKLGSIASGKLWCSKQAIFPIGFRSRVKFFDASSPEITSSYICEILNGGLIGPLFKVSLEECPDTNLVSSSAQKCWEMISHRVFEELATKLNPGRQDLPPLQPDTECINGLGMFGLLSPPIVQSIEALDTNYQCLEYWKNKLKLKDECVTVKGPSGSSESTVDMARSAVMERGQCSGTKVATEEEHANYSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="72027" PGL_stop="70588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72027" e_stop="71812"/>
            <exon e_start="71018" e_stop="70895"/>
            <exon e_start="70818" e_stop="70588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.958"/>
          <exon-intron don_prob="0.947" acc_prob="0.990" e_score="0.927"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="72027" e_stop="71812" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71811" i_stop="71019" i_length="793"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="71018" e_stop="70895" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70894" i_stop="70819" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="70818" e_stop="70588" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72027" stop="71812"/>
              <exon start="71018" stop="70895"/>
              <exon start="70818" stop="70588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72027" stop="71812"/>
              <exon start="71018" stop="70895"/>
              <exon start="70818" stop="70588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431347" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72027" stop="71812"/>
              <exon start="71018" stop="70895"/>
              <exon start="70818" stop="70588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431346" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGGAAATGGACAAAAAATAGATGTGGCTAAGTCTAAGGTATACTATAATTGGGTGATGCCATTGTTGAGGTTATTGGCATTTGGTGCAACAATTTCAGCAACATTAGTTATGGCACTTAACAACCAAAAGAAAACTATTGTTGTTGCCACTATTGGTACCACTCCTATTCAAGCTACTCTCAATGCTAAGTTCCAACATACTCCAGCTTTTGT : GTTCTTTGTTATAGCAAACGGACTAGTTAGTCTCCATAACCTCCTCATGCTAGCATTTTGTTTTATTGGAAATAAATATGATTACAAGGGACTACGATTTTATGTAATTGGAATCCTAGACATG : ATAAATGTGGCATTAATCTCTGGTGGAGCAAGTTCAGCAGCATTTATGGGACAACTTGGTAGGAATGGAAATTCTCATGCAAGATGGAATAAAATTTGTGATAAATTTTATACATTTTGTAACCATGGTGAAGGAGCTATTATTGCTTCTTTTATTGGTTTGCTCTTAATGATAATTACTACTGCAATTAATATAATTAAGCTTAAAAACATCAATAATTGTGCCATTAAT</gDNA_template>
            <first_frame> R  R  K  W  T  K  N  R  C  G  *  V  *  G  I  L  *  L  G  D  A  I  V  E  V  I  G  I  W  C  N  N  F  S  N  I  S  Y  G  T  *  Q  P  K  E  N  Y  C  C  C  H  Y  W  Y  H  S  Y  S  S  Y  S  Q  C  *  V  P  T  Y  S  S  F  C  :  V  L  C  Y  S  K  R  T  S  *  S  P  *  P  P  H  A  S  I  L  F  Y  W  K  *  I  *  L  Q  G  T  T  I  L  C  N  W  N  P  R  H   : D  K  C  G  I  N  L  W  W  S  K  F  S  S  I  Y  G  T  T  W  *  E  W  K  F  S  C  K  M  E  *  N  L  *  *  I  L  Y  I  L  *  P  W  *  R  S  Y  Y  C  F  F  Y  W  F  A  L  N  D  N  Y  Y  C  N  *  Y  N  *  A  *  K  H  Q  *  L  C  H  *  </first_frame>
            <second_frame>  E  G  N  G  Q  K  I  D  V  A  K  S  K  V  Y  Y  N  W  V  M  P  L  L  R  L  L  A  F  G  A  T  I  S  A  T  L  V  M  A  L  N  N  Q  K  K  T  I  V  V  A  T  I  G  T  T  P  I  Q  A  T  L  N  A  K  F  Q  H  T  P  A  F  V :   F  F  V  I  A  N  G  L  V  S  L  H  N  L  L  M  L  A  F  C  F  I  G  N  K  Y  D  Y  K  G  L  R  F  Y  V  I  G  I  L  D  M  :  I  N  V  A  L  I  S  G  G  A  S  S  A  A  F  M  G  Q  L  G  R  N  G  N  S  H  A  R  W  N  K  I  C  D  K  F  Y  T  F  C  N  H  G  E  G  A  I  I  A  S  F  I  G  L  L  L  M  I  I  T  T  A  I  N  I  I  K  L  K  N  I  N  N  C  A  I  N </second_frame>
            <third_frame>   K  E  M  D  K  K  *  M  W  L  S  L  R  Y  T  I  I  G  *  C  H  C  *  G  Y  W  H  L  V  Q  Q  F  Q  Q  H  *  L  W  H  L  T  T  K  R  K  L  L  L  L  P  L  L  V  P  L  L  F  K  L  L  S  M  L  S  S  N  I  L  Q  L  L   : C  S  L  L  *  Q  T  D  *  L  V  S  I  T  S  S  C  *  H  F  V  L  L  E  I  N  M  I  T  R  D  Y  D  F  M  *  L  E  S  *  T  * :   *  M  W  H  *  S  L  V  E  Q  V  Q  Q  H  L  W  D  N  L  V  G  M  E  I  L  M  Q  D  G  I  K  F  V  I  N  F  I  H  F  V  T  M  V  K  E  L  L  L  L  L  L  L  V  C  S  *  *  *  L  L  L  Q  L  I  *  L  S  L  K  T  S  I  I  V  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72026" stop="71812"/>
                    <exon start="71018" stop="70895"/>
                    <exon start="70818" stop="70588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGNGQKIDVAKSKVYYNWVMPLLRLLAFGATISATLVMALNNQKKTIVVATIGTTPIQATLNAKFQHTPAFVFFVIANGLVSLHNLLMLAFCFIGNKYDYKGLRFYVIGILDMINVALISGGASSAAFMGQLGRNGNSHARWNKICDKFYTFCNHGEGAIIASFIGLLLMIITTAINIIKLKNINNCAIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78244" PGL_stop="72786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78244" e_stop="78009"/>
            <exon e_start="77298" e_stop="77220"/>
            <exon e_start="77056" e_stop="76943"/>
            <exon e_start="76574" e_stop="76464"/>
            <exon e_start="75083" e_stop="74971"/>
            <exon e_start="73652" e_stop="73575"/>
            <exon e_start="73481" e_stop="73410"/>
            <exon e_start="73303" e_stop="72786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.664" acc_prob="0.946" e_score="0.928"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.402" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.740" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="78244" e_stop="78009" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.664" acc_prob="0.946">
            <gDNA_intron_boundary i_start="78008" i_stop="77299" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77298" e_stop="77220" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77056" e_stop="76943" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76574" e_stop="76464" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75083" e_stop="74971" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.402" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73652" e_stop="73575" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73481" e_stop="73410" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.740">
            <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="73303" e_stop="72786" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78244" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78244" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78244" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78244" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78243" stop="78009"/>
              <exon start="77298" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="75019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77296" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77295" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75021" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73253" stop="72922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATATTTAACAAGAAGAAAAAAGGAGATGTAAGAAAAATATCCAAAAACCAATCTTTTGAAATCTTGAATTTACCCAATTTCTGTCGGAATTTTCGCTCAGATTTCCATTTGAATTCCAACCCATTTTCAGATAATCTCAAGTACCCTTCACTGTATATTTTTTTTTTTTCGTGTGTGGGGATATATATATTATAATAGAGGGGTACCCTATCTTCCAGATTTGTTCATTGACTG : GAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG : ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG : GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG : GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT : GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT : GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG : GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</gDNA_template>
            <first_frame> Q  Y  L  T  R  R  K  K  E  M  *  E  K  Y  P  K  T  N  L  L  K  S  *  I  Y  P  I  S  V  G  I  F  A  Q  I  S  I  *  I  P  T  H  F  Q  I  I  S  S  T  L  H  C  I  F  F  F  F  R  V  W  G  Y  I  Y  Y  N  R  G  V  P  Y  L  P  D  L  F  I  D  W :   K  N  K  F  T  S  Q  I  G  R  N  *  L  F  Y  L  R  R  L  D  I  Q  T  D  *  K  :  I  C  R  V  S  *  C  A  V  G  A  G  Q  C  F  F  I  P  E  E  L  L  M  S  A  V  Q  C  A  M  H  S  P  L  S  H  H  L  :  E  W  K  W  L  N  *  Y  V  E  A  V  V  H  Y  L  C  I  H  V  E  R  T  V  *  D  A  P  A  V  I  R  *  T  L  S  Q  :  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V  E  L  H  R  L  N  V  Q  Y  A  I  I  L  P  M  L  M :   Q  E  M  E  E  P  M  H  L  *  T  L  L  T  A  L  L  L  L  L  Q  D  P  L  Q  L :   P  R  L  V  H  K  I  K  L  L  S  S  K  T  Q  C  L  S  M  R  V  A  S  W :   *  V  M  *  L  L  V  *  Q  Q  H  H  S  S  S  A  K  L  A  V  R  G  Q  Q  L  R  V  L  L  A  T  I  G  K  R  R  I  K  T  A  A  A  Y  K  Y  G  S  V  *  C  *  Y  Y  N  H  T  P  V  F  L  L  L  T  F  *  Y  Y  D  C  G  V  I  E  A  T  T  T  S  V  V  T  I  W  S  L  *  L  I  T  T  R  *  I  C  G  V  L  C  P  K  S  *  V  K  N  V  I  M  Y  L  I  C  H  I  I  V  Y  D  C  I  P  *  T  L  L  P  K  H  L  A  F  E  R  R  I  Q  D  L  E  T  R  V  S  E  L  *  M  S  A  V  F  I  R  C  M  H  L  F  P  C  A  C  V  *  W  H  L  Q  T  C  L  E  </first_frame>
            <second_frame>  N  I  *  Q  E  E  K  R  R  C  K  K  N  I  Q  K  P  I  F  *  N  L  E  F  T  Q  F  L  S  E  F  S  L  R  F  P  F  E  F  Q  P  I  F  R  *  S  Q  V  P  F  T  V  Y  F  F  F  F  V  C  G  D  I  Y  I  I  I  E  G  Y  P  I  F  Q  I  C  S  L  T   : G  R  I  N  L  P  H  R  S  A  E  I  S  S  S  T  S  D  D  S  I  F  K  Q  I  E  R :   Y  A  E  S  V  D  V  Q  W  V  Q  D  N  A  S  L  S  Q  R  S  F  *  C  L  L  C  S  V  Q  C  T  H  P  C  P  T  T  W :   N  G  N  G  S  I  D  M  W  R  L  S  Y  I  T  Y  A  S  T  W  S  E  Q  C  E  M  L  L  L  S  Y  G  E  P  C  P  R :   S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  S  S  I  G  *  M  C  S  M  P  L  Y  Y  Q  C  *   : C  R  R  W  K  S  P  C  T  F  E  P  S  *  R  H  C  Y  Y  C  F  R  I  L  F  N   : C  Q  G  S  F  T  K  S  N  C  C  R  P  K  P  N  V  C  R  *  E  W  Q  V   : G  E  *  C  S  C  W  C  N  N  N  I  I  A  R  L  L  N  L  L  F  V  D  N  N  *  E  F  C  S  Q  Q  L  E  R  G  E  *  R  Q  P  L  H  I  N  M  V  V  F  S  V  N  T  T  T  I  P  L  F  F  F  C  *  H  F  D  I  M  I  V  G  *  L  K  L  L  L  L  V  L  *  L  F  G  V  C  N  *  *  L  R  V  R  F  V  A  C  Y  A  Q  S  H  K  *  R  M  L  L  C  T  L  Y  A  I  L  L  Y  M  T  V  Y  R  E  P  Y  C  L  N  T  L  L  L  R  G  E  F  R  I  *  R  L  E  L  V  S  F  E  *  V  R  F  L  L  D  V  C  I  F  S  L  V  H  V  C  N  G  T  C  R  L  V  W  N </second_frame>
            <third_frame>   I  F  N  K  K  K  K  G  D  V  R  K  I  S  K  N  Q  S  F  E  I  L  N  L  P  N  F  C  R  N  F  R  S  D  F  H  L  N  S  N  P  F  S  D  N  L  K  Y  P  S  L  Y  I  F  F  F  S  C  V  G  I  Y  I  L  *  *  R  G  T  L  S  S  R  F  V  H  *  L  :  E  E  *  I  Y  L  T  D  R  Q  K  L  A  L  L  P  Q  T  T  R  Y  S  N  R  L  K   : D  M  Q  S  Q  L  M  C  S  G  C  R  T  M  L  L  Y  P  R  G  A  S  N  V  C  C  A  V  C  N  A  L  T  P  V  P  P  P   : G  M  E  M  A  Q  L  I  C  G  G  C  R  T  L  L  M  H  P  R  G  A  N  S  V  R  C  S  C  C  H  T  V  N  L  V  P   : G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G  A  P  S  V  K  C  A  V  C  H  Y  I  T  N  V  N  :  A  G  D  G  R  A  H  A  P  L  N  P  P  N  G  T  A  T  T  A  S  G  S  S  S  T  :  A  K  A  R  S  Q  N  Q  T  V  V  V  Q  N  P  M  S  V  D  E  S  G  K  L  :  V  S  N  V  V  V  G  V  T  T  T  S  *  L  V  C  *  T  C  C  S  W  T  T  I  E  S  F  A  R  N  N  W  K  E  E  N  K  D  S  R  C  I  *  I  W  *  C  L  V  L  I  L  Q  P  Y  P  C  F  S  F  V  N  I  L  I  L  *  L  W  G  D  *  S  Y  Y  Y  *  C  C  D  Y  L  E  S  V  I  D  N  Y  A  L  D  L  W  R  A  M  P  K  V  I  S  E  E  C  Y  Y  V  P  Y  M  P  Y  Y  C  I  *  L  Y  T  V  N  L  T  A  *  T  P  C  F  *  E  A  N  S  G  S  R  D  *  S  *  *  A  L  N  E  C  G  F  Y  *  M  Y  A  S  F  P  L  C  M  C  V  M  A  P  A  D  L  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77289" stop="77220"/>
                    <exon start="77056" stop="76943"/>
                    <exon start="76574" stop="76464"/>
                    <exon start="75083" stop="74971"/>
                    <exon start="73652" stop="73575"/>
                    <exon start="73481" stop="73410"/>
                    <exon start="73303" stop="73265"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTDRQKLALLPQTTRYSNRLKDMQSQLMCSGCRTMLLYPRGASNVCCAVCNALTPVPPPGMEMAQLICGGCRTLLMHPRGANSVRCSCCHTVNLVPGPNQFAHVYCGNCRMMLMYPCGAPSVKCAVCHYITNVNAGDGRAHAPLNPPNGTATTASGSSSTAKARSQNQTVVVQNPMSVDESGKLVSNVVVGVTTTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78242" stop="78048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFNKKKKGDVRKISKNQSFEILNLPNFCRNFRSDFHLNSNPFSDNLKYPSLYIFFFSCVGIYIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77301" e_stop="77220"/>
            <exon e_start="77056" e_stop="76943"/>
            <exon e_start="76574" e_stop="76464"/>
            <exon e_start="75083" e_stop="74971"/>
            <exon e_start="73652" e_stop="73575"/>
            <exon e_start="73481" e_stop="73410"/>
            <exon e_start="73303" e_stop="72786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.402" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.740" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77301" e_stop="77220" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77219" i_stop="77057" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77056" e_stop="76943" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="76942" i_stop="76575" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76574" e_stop="76464" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75083" e_stop="74971" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.402" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73652" e_stop="73575" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73481" e_stop="73410" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.740">
            <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="73303" e_stop="72786" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77301" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77299" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77296" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77295" stop="77220"/>
              <exon start="77056" stop="76943"/>
              <exon start="76574" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75021" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73253" stop="72922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGAAGAATAAATTTACCTCACAGATCGGCAGAAATTAGCTCTTCTACCTCAGACGACTCGATATTCAAACAGATTGAAAG : ATATGCAGAGTCAGTTGATGTGCAGTGGGTGCAGGACAATGCTTCTTTATCCCAGAGGAGCTTCTAATGTCTGCTGTGCAGTGTGCAATGCACTCACCCCTGTCCCACCACCTG : GAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG : GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT : GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT : GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG : GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</gDNA_template>
            <first_frame> Q  E  E  *  I  Y  L  T  D  R  Q  K  L  A  L  L  P  Q  T  T  R  Y  S  N  R  L  K   : D  M  Q  S  Q  L  M  C  S  G  C  R  T  M  L  L  Y  P  R  G  A  S  N  V  C  C  A  V  C  N  A  L  T  P  V  P  P  P   : G  M  E  M  A  Q  L  I  C  G  G  C  R  T  L  L  M  H  P  R  G  A  N  S  V  R  C  S  C  C  H  T  V  N  L  V  P   : G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G  A  P  S  V  K  C  A  V  C  H  Y  I  T  N  V  N  :  A  G  D  G  R  A  H  A  P  L  N  P  P  N  G  T  A  T  T  A  S  G  S  S  S  T  :  A  K  A  R  S  Q  N  Q  T  V  V  V  Q  N  P  M  S  V  D  E  S  G  K  L  :  V  S  N  V  V  V  G  V  T  T  T  S  *  L  V  C  *  T  C  C  S  W  T  T  I  E  S  F  A  R  N  N  W  K  E  E  N  K  D  S  R  C  I  *  I  W  *  C  L  V  L  I  L  Q  P  Y  P  C  F  S  F  V  N  I  L  I  L  *  L  W  G  D  *  S  Y  Y  Y  *  C  C  D  Y  L  E  S  V  I  D  N  Y  A  L  D  L  W  R  A  M  P  K  V  I  S  E  E  C  Y  Y  V  P  Y  M  P  Y  Y  C  I  *  L  Y  T  V  N  L  T  A  *  T  P  C  F  *  E  A  N  S  G  S  R  D  *  S  *  *  A  L  N  E  C  G  F  Y  *  M  Y  A  S  F  P  L  C  M  C  V  M  A  P  A  D  L  S  G   </first_frame>
            <second_frame>  R  K  N  K  F  T  S  Q  I  G  R  N  *  L  F  Y  L  R  R  L  D  I  Q  T  D  *  K  :  I  C  R  V  S  *  C  A  V  G  A  G  Q  C  F  F  I  P  E  E  L  L  M  S  A  V  Q  C  A  M  H  S  P  L  S  H  H  L  :  E  W  K  W  L  N  *  Y  V  E  A  V  V  H  Y  L  C  I  H  V  E  R  T  V  *  D  A  P  A  V  I  R  *  T  L  S  Q  :  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V  E  L  H  R  L  N  V  Q  Y  A  I  I  L  P  M  L  M :   Q  E  M  E  E  P  M  H  L  *  T  L  L  T  A  L  L  L  L  L  Q  D  P  L  Q  L :   P  R  L  V  H  K  I  K  L  L  S  S  K  T  Q  C  L  S  M  R  V  A  S  W :   *  V  M  *  L  L  V  *  Q  Q  H  H  S  S  S  A  K  L  A  V  R  G  Q  Q  L  R  V  L  L  A  T  I  G  K  R  R  I  K  T  A  A  A  Y  K  Y  G  S  V  *  C  *  Y  Y  N  H  T  P  V  F  L  L  L  T  F  *  Y  Y  D  C  G  V  I  E  A  T  T  T  S  V  V  T  I  W  S  L  *  L  I  T  T  R  *  I  C  G  V  L  C  P  K  S  *  V  K  N  V  I  M  Y  L  I  C  H  I  I  V  Y  D  C  I  P  *  T  L  L  P  K  H  L  A  F  E  R  R  I  Q  D  L  E  T  R  V  S  E  L  *  M  S  A  V  F  I  R  C  M  H  L  F  P  C  A  C  V  *  W  H  L  Q  T  C  L  E  </second_frame>
            <third_frame>   G  R  I  N  L  P  H  R  S  A  E  I  S  S  S  T  S  D  D  S  I  F  K  Q  I  E  R :   Y  A  E  S  V  D  V  Q  W  V  Q  D  N  A  S  L  S  Q  R  S  F  *  C  L  L  C  S  V  Q  C  T  H  P  C  P  T  T  W :   N  G  N  G  S  I  D  M  W  R  L  S  Y  I  T  Y  A  S  T  W  S  E  Q  C  E  M  L  L  L  S  Y  G  E  P  C  P  R :   S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  S  S  I  G  *  M  C  S  M  P  L  Y  Y  Q  C  *   : C  R  R  W  K  S  P  C  T  F  E  P  S  *  R  H  C  Y  Y  C  F  R  I  L  F  N   : C  Q  G  S  F  T  K  S  N  C  C  R  P  K  P  N  V  C  R  *  E  W  Q  V   : G  E  *  C  S  C  W  C  N  N  N  I  I  A  R  L  L  N  L  L  F  V  D  N  N  *  E  F  C  S  Q  Q  L  E  R  G  E  *  R  Q  P  L  H  I  N  M  V  V  F  S  V  N  T  T  T  I  P  L  F  F  F  C  *  H  F  D  I  M  I  V  G  *  L  K  L  L  L  L  V  L  *  L  F  G  V  C  N  *  *  L  R  V  R  F  V  A  C  Y  A  Q  S  H  K  *  R  M  L  L  C  T  L  Y  A  I  L  L  Y  M  T  V  Y  R  E  P  Y  C  L  N  T  L  L  L  R  G  E  F  R  I  *  R  L  E  L  V  S  F  E  *  V  R  F  L  L  D  V  C  I  F  S  L  V  H  V  C  N  G  T  C  R  L  V  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77289" stop="77220"/>
                    <exon start="77056" stop="76943"/>
                    <exon start="76574" stop="76464"/>
                    <exon start="75083" stop="74971"/>
                    <exon start="73652" stop="73575"/>
                    <exon start="73481" stop="73410"/>
                    <exon start="73303" stop="73265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTDRQKLALLPQTTRYSNRLKDMQSQLMCSGCRTMLLYPRGASNVCCAVCNALTPVPPPGMEMAQLICGGCRTLLMHPRGANSVRCSCCHTVNLVPGPNQFAHVYCGNCRMMLMYPCGAPSVKCAVCHYITNVNAGDGRAHAPLNPPNGTATTASGSSSTAKARSQNQTVVVQNPMSVDESGKLVSNVVVGVTTTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75087" e_stop="74971"/>
            <exon e_start="73652" e_stop="73575"/>
            <exon e_start="73481" e_stop="73410"/>
            <exon e_start="73303" e_stop="72786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.402" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.740" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="75087" e_stop="74971" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.402" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73652" e_stop="73575" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73481" e_stop="73410" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.740">
            <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="73303" e_stop="72786" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75087" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75021" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73253" stop="72922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGGTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT : GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT : GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG : GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</gDNA_template>
            <first_frame> S  G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G  A  P  S  V  K  C  A  V  C  H  Y  I  T  N  V  N  :  A  G  D  G  R  A  H  A  P  L  N  P  P  N  G  T  A  T  T  A  S  G  S  S  S  T  :  A  K  A  R  S  Q  N  Q  T  V  V  V  Q  N  P  M  S  V  D  E  S  G  K  L  :  V  S  N  V  V  V  G  V  T  T  T  S  *  L  V  C  *  T  C  C  S  W  T  T  I  E  S  F  A  R  N  N  W  K  E  E  N  K  D  S  R  C  I  *  I  W  *  C  L  V  L  I  L  Q  P  Y  P  C  F  S  F  V  N  I  L  I  L  *  L  W  G  D  *  S  Y  Y  Y  *  C  C  D  Y  L  E  S  V  I  D  N  Y  A  L  D  L  W  R  A  M  P  K  V  I  S  E  E  C  Y  Y  V  P  Y  M  P  Y  Y  C  I  *  L  Y  T  V  N  L  T  A  *  T  P  C  F  *  E  A  N  S  G  S  R  D  *  S  *  *  A  L  N  E  C  G  F  Y  *  M  Y  A  S  F  P  L  C  M  C  V  M  A  P  A  D  L  S  G   </first_frame>
            <second_frame>  Q  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V  E  L  H  R  L  N  V  Q  Y  A  I  I  L  P  M  L  M :   Q  E  M  E  E  P  M  H  L  *  T  L  L  T  A  L  L  L  L  L  Q  D  P  L  Q  L :   P  R  L  V  H  K  I  K  L  L  S  S  K  T  Q  C  L  S  M  R  V  A  S  W :   *  V  M  *  L  L  V  *  Q  Q  H  H  S  S  S  A  K  L  A  V  R  G  Q  Q  L  R  V  L  L  A  T  I  G  K  R  R  I  K  T  A  A  A  Y  K  Y  G  S  V  *  C  *  Y  Y  N  H  T  P  V  F  L  L  L  T  F  *  Y  Y  D  C  G  V  I  E  A  T  T  T  S  V  V  T  I  W  S  L  *  L  I  T  T  R  *  I  C  G  V  L  C  P  K  S  *  V  K  N  V  I  M  Y  L  I  C  H  I  I  V  Y  D  C  I  P  *  T  L  L  P  K  H  L  A  F  E  R  R  I  Q  D  L  E  T  R  V  S  E  L  *  M  S  A  V  F  I  R  C  M  H  L  F  P  C  A  C  V  *  W  H  L  Q  T  C  L  E  </second_frame>
            <third_frame>   R  S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  S  S  I  G  *  M  C  S  M  P  L  Y  Y  Q  C  *   : C  R  R  W  K  S  P  C  T  F  E  P  S  *  R  H  C  Y  Y  C  F  R  I  L  F  N   : C  Q  G  S  F  T  K  S  N  C  C  R  P  K  P  N  V  C  R  *  E  W  Q  V   : G  E  *  C  S  C  W  C  N  N  N  I  I  A  R  L  L  N  L  L  F  V  D  N  N  *  E  F  C  S  Q  Q  L  E  R  G  E  *  R  Q  P  L  H  I  N  M  V  V  F  S  V  N  T  T  T  I  P  L  F  F  F  C  *  H  F  D  I  M  I  V  G  *  L  K  L  L  L  L  V  L  *  L  F  G  V  C  N  *  *  L  R  V  R  F  V  A  C  Y  A  Q  S  H  K  *  R  M  L  L  C  T  L  Y  A  I  L  L  Y  M  T  V  Y  R  E  P  Y  C  L  N  T  L  L  L  R  G  E  F  R  I  *  R  L  E  L  V  S  F  E  *  V  R  F  L  L  D  V  C  I  F  S  L  V  H  V  C  N  G  T  C  R  L  V  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75087" stop="74971"/>
                    <exon start="73652" stop="73575"/>
                    <exon start="73481" stop="73410"/>
                    <exon start="73303" stop="73265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGPNQFAHVYCGNCRMMLMYPCGAPSVKCAVCHYITNVNAGDGRAHAPLNPPNGTATTASGSSSTAKARSQNQTVVVQNPMSVDESGKLVSNVVVGVTTTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="76575" e_stop="76464"/>
            <exon e_start="75083" e_stop="74971"/>
            <exon e_start="73652" e_stop="73575"/>
            <exon e_start="73481" e_stop="73410"/>
            <exon e_start="73303" e_stop="72786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="0.991"/>
          <exon-intron don_prob="0.402" acc_prob="1.000" e_score="0.982"/>
          <exon-intron don_prob="0.997" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.740" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="76575" e_stop="76464" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="76463" i_stop="75084" i_length="1380"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="75083" e_stop="74971" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.402" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74970" i_stop="73653" i_length="1318"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73652" e_stop="73575" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73574" i_stop="73482" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73481" e_stop="73410" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.740">
            <gDNA_intron_boundary i_start="73409" i_stop="73304" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="73303" e_stop="72786" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76575" stop="76464"/>
              <exon start="75083" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425257" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75047" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75021" stop="74971"/>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="72786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73652" stop="73575"/>
              <exon start="73481" stop="73410"/>
              <exon start="73303" stop="73062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73253" stop="72922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGGAAATGGCTCAATTGATATGTGGAGGCTGTCGTACATTACTTATGCATCCACGTGGAGCGAACAGTGTGAGATGCTCCTGCTGTCATACGGTGAACCTTGTCCCAG : GTCCAAACCAGTTTGCTCATGTCTACTGCGGGAACTGCCGTATGATGCTGATGTATCCATGTGGAGCTCCATCGGTTAAATGTGCAGTATGCCATTATATTACCAATGTTAAT : GCAGGAGATGGAAGAGCCCATGCACCTTTGAACCCTCCTAACGGCACTGCTACTACTGCTTCAGGATCCTCTTCAACT : GCCAAGGCTCGTTCACAAAATCAAACTGTTGTCGTCCAAAACCCAATGTCTGTCGATGAGAGTGGCAAGTTG : GTGAGTAATGTAGTTGTTGGTGTAACAACAACATCATAGCTCGTCTGCTAAACTTGCTGTTCGTGGACAACAATTGAGAGTTTTGCTCGCAACAATTGGAAAGAGGAGAATAAAGACAGCCGCTGCATATAAATATGGTAGTGTTTAGTGTTAATACTACAACCATACCCCTGTTTTTCTTTTGTTAACATTTTGATATTATGATTGTGGGGTGATTGAAGCTACTACTACTAGTGTTGTGACTATTTGGAGTCTGTAATTGATAACTACGCGTTAGATTTGTGGCGTGCTATGCCCAAAGTCATAAGTGAAGAATGTTATTATGTACCTTATATGCCATATTATTGTATATGACTGTATACCGTGAACCTTACTGCCTAAACACCTTGCTTTTGAGAGGCGAATTCAGGATCTAGAGACTAGAGTTAGTGAGCTTTGAATGAGTGCGGTTTTTATTAGATGTATGCATCTTTTCCCTTGTGCATGTGTGTAATGGCACCTGCAGACTTGTCTGGAAT</gDNA_template>
            <first_frame> G  M  E  M  A  Q  L  I  C  G  G  C  R  T  L  L  M  H  P  R  G  A  N  S  V  R  C  S  C  C  H  T  V  N  L  V  P   : G  P  N  Q  F  A  H  V  Y  C  G  N  C  R  M  M  L  M  Y  P  C  G  A  P  S  V  K  C  A  V  C  H  Y  I  T  N  V  N  :  A  G  D  G  R  A  H  A  P  L  N  P  P  N  G  T  A  T  T  A  S  G  S  S  S  T  :  A  K  A  R  S  Q  N  Q  T  V  V  V  Q  N  P  M  S  V  D  E  S  G  K  L  :  V  S  N  V  V  V  G  V  T  T  T  S  *  L  V  C  *  T  C  C  S  W  T  T  I  E  S  F  A  R  N  N  W  K  E  E  N  K  D  S  R  C  I  *  I  W  *  C  L  V  L  I  L  Q  P  Y  P  C  F  S  F  V  N  I  L  I  L  *  L  W  G  D  *  S  Y  Y  Y  *  C  C  D  Y  L  E  S  V  I  D  N  Y  A  L  D  L  W  R  A  M  P  K  V  I  S  E  E  C  Y  Y  V  P  Y  M  P  Y  Y  C  I  *  L  Y  T  V  N  L  T  A  *  T  P  C  F  *  E  A  N  S  G  S  R  D  *  S  *  *  A  L  N  E  C  G  F  Y  *  M  Y  A  S  F  P  L  C  M  C  V  M  A  P  A  D  L  S  G   </first_frame>
            <second_frame>  E  W  K  W  L  N  *  Y  V  E  A  V  V  H  Y  L  C  I  H  V  E  R  T  V  *  D  A  P  A  V  I  R  *  T  L  S  Q  :  V  Q  T  S  L  L  M  S  T  A  G  T  A  V  *  C  *  C  I  H  V  E  L  H  R  L  N  V  Q  Y  A  I  I  L  P  M  L  M :   Q  E  M  E  E  P  M  H  L  *  T  L  L  T  A  L  L  L  L  L  Q  D  P  L  Q  L :   P  R  L  V  H  K  I  K  L  L  S  S  K  T  Q  C  L  S  M  R  V  A  S  W :   *  V  M  *  L  L  V  *  Q  Q  H  H  S  S  S  A  K  L  A  V  R  G  Q  Q  L  R  V  L  L  A  T  I  G  K  R  R  I  K  T  A  A  A  Y  K  Y  G  S  V  *  C  *  Y  Y  N  H  T  P  V  F  L  L  L  T  F  *  Y  Y  D  C  G  V  I  E  A  T  T  T  S  V  V  T  I  W  S  L  *  L  I  T  T  R  *  I  C  G  V  L  C  P  K  S  *  V  K  N  V  I  M  Y  L  I  C  H  I  I  V  Y  D  C  I  P  *  T  L  L  P  K  H  L  A  F  E  R  R  I  Q  D  L  E  T  R  V  S  E  L  *  M  S  A  V  F  I  R  C  M  H  L  F  P  C  A  C  V  *  W  H  L  Q  T  C  L  E  </second_frame>
            <third_frame>   N  G  N  G  S  I  D  M  W  R  L  S  Y  I  T  Y  A  S  T  W  S  E  Q  C  E  M  L  L  L  S  Y  G  E  P  C  P  R :   S  K  P  V  C  S  C  L  L  R  E  L  P  Y  D  A  D  V  S  M  W  S  S  I  G  *  M  C  S  M  P  L  Y  Y  Q  C  *   : C  R  R  W  K  S  P  C  T  F  E  P  S  *  R  H  C  Y  Y  C  F  R  I  L  F  N   : C  Q  G  S  F  T  K  S  N  C  C  R  P  K  P  N  V  C  R  *  E  W  Q  V   : G  E  *  C  S  C  W  C  N  N  N  I  I  A  R  L  L  N  L  L  F  V  D  N  N  *  E  F  C  S  Q  Q  L  E  R  G  E  *  R  Q  P  L  H  I  N  M  V  V  F  S  V  N  T  T  T  I  P  L  F  F  F  C  *  H  F  D  I  M  I  V  G  *  L  K  L  L  L  L  V  L  *  L  F  G  V  C  N  *  *  L  R  V  R  F  V  A  C  Y  A  Q  S  H  K  *  R  M  L  L  C  T  L  Y  A  I  L  L  Y  M  T  V  Y  R  E  P  Y  C  L  N  T  L  L  L  R  G  E  F  R  I  *  R  L  E  L  V  S  F  E  *  V  R  F  L  L  D  V  C  I  F  S  L  V  H  V  C  N  G  T  C  R  L  V  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76575" stop="76464"/>
                    <exon start="75083" stop="74971"/>
                    <exon start="73652" stop="73575"/>
                    <exon start="73481" stop="73410"/>
                    <exon start="73303" stop="73265"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMEMAQLICGGCRTLLMHPRGANSVRCSCCHTVNLVPGPNQFAHVYCGNCRMMLMYPCGAPSVKCAVCHYITNVNAGDGRAHAPLNPPNGTATTASGSSSTAKARSQNQTVVVQNPMSVDESGKLVSNVVVGVTTTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="91962" PGL_stop="92595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91962" e_stop="92595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="91962" e_stop="92595" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91962" stop="92595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91962" stop="92575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91962" stop="92560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91962" stop="92354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91962" stop="92354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATCTTATACATCAGAAATGAAAAGATCAGTGCCTTTTATCATGCTTGACTTAGCTAAGCTTCGTGCGATTAAAGTGGACATTGAGGACAACAGTGCATGGGTTCAAGCTGGTGCGACGATTGGTGAAGTGTACTATAGGATTGCAGAAAAAAGCAAGACACATGGTTACCCTGCTGGCCTATGTACCAGCTTAGGAATTGGTGGTCATATTACTGGAGGAGCTTATGGTCCTATGATGAGGAAATATGGTCTTGGAGCAGACAATGTTGTCGATGCTCGGATTGTTGATGTCAGTGGCAGAGTTCTTGACAGGGCCTTAATGGGAGAGGATTTGTTTTGGGCAATCAGAGGGGGTGGAGGAGGCAGTTTTGGCATAATCTTGGCTTGGAAAGTTAGACTTGTTCCTGTTCCATCAACTGTGACAGTTTTCACAGTTCCAAAGACACTGGAAACTGGTGCAACAAAAGTCTTACACAAATGGCAACATGTTGCACACAAGATTGATGAAGATCTCTTCATCAGAATCCTCATAACTACAGTCAATTCAACAAAGGGGAAGAAAACAGTGCAAACAGCTTACCAAGCTTTGTTTCTTGGAAAAACTGATAGGCTTCTTGATGTGATGAATCAT</gDNA_template>
            <first_frame> H  I  L  Y  I  R  N  E  K  I  S  A  F  Y  H  A  *  L  S  *  A  S  C  D  *  S  G  H  *  G  Q  Q  C  M  G  S  S  W  C  D  D  W  *  S  V  L  *  D  C  R  K  K  Q  D  T  W  L  P  C  W  P  M  Y  Q  L  R  N  W  W  S  Y  Y  W  R  S  L  W  S  Y  D  E  E  I  W  S  W  S  R  Q  C  C  R  C  S  D  C  *  C  Q  W  Q  S  S  *  Q  G  L  N  G  R  G  F  V  L  G  N  Q  R  G  W  R  R  Q  F  W  H  N  L  G  L  E  S  *  T  C  S  C  S  I  N  C  D  S  F  H  S  S  K  D  T  G  N  W  C  N  K  S  L  T  Q  M  A  T  C  C  T  Q  D  *  *  R  S  L  H  Q  N  P  H  N  Y  S  Q  F  N  K  G  E  E  N  S  A  N  S  L  P  S  F  V  S  W  K  N  *  *  A  S  *  C  D  E  S  </first_frame>
            <second_frame>  I  S  Y  T  S  E  M  K  R  S  V  P  F  I  M  L  D  L  A  K  L  R  A  I  K  V  D  I  E  D  N  S  A  W  V  Q  A  G  A  T  I  G  E  V  Y  Y  R  I  A  E  K  S  K  T  H  G  Y  P  A  G  L  C  T  S  L  G  I  G  G  H  I  T  G  G  A  Y  G  P  M  M  R  K  Y  G  L  G  A  D  N  V  V  D  A  R  I  V  D  V  S  G  R  V  L  D  R  A  L  M  G  E  D  L  F  W  A  I  R  G  G  G  G  G  S  F  G  I  I  L  A  W  K  V  R  L  V  P  V  P  S  T  V  T  V  F  T  V  P  K  T  L  E  T  G  A  T  K  V  L  H  K  W  Q  H  V  A  H  K  I  D  E  D  L  F  I  R  I  L  I  T  T  V  N  S  T  K  G  K  K  T  V  Q  T  A  Y  Q  A  L  F  L  G  K  T  D  R  L  L  D  V  M  N  H </second_frame>
            <third_frame>   Y  L  I  H  Q  K  *  K  D  Q  C  L  L  S  C  L  T  *  L  S  F  V  R  L  K  W  T  L  R  T  T  V  H  G  F  K  L  V  R  R  L  V  K  C  T  I  G  L  Q  K  K  A  R  H  M  V  T  L  L  A  Y  V  P  A  *  E  L  V  V  I  L  L  E  E  L  M  V  L  *  *  G  N  M  V  L  E  Q  T  M  L  S  M  L  G  L  L  M  S  V  A  E  F  L  T  G  P  *  W  E  R  I  C  F  G  Q  S  E  G  V  E  E  A  V  L  A  *  S  W  L  G  K  L  D  L  F  L  F  H  Q  L  *  Q  F  S  Q  F  Q  R  H  W  K  L  V  Q  Q  K  S  Y  T  N  G  N  M  L  H  T  R  L  M  K  I  S  S  S  E  S  S  *  L  Q  S  I  Q  Q  R  G  R  K  Q  C  K  Q  L  T  K  L  C  F  L  E  K  L  I  G  F  L  M  *  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91963" stop="92595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISYTSEMKRSVPFIMLDLAKLRAIKVDIEDNSAWVQAGATIGEVYYRIAEKSKTHGYPAGLCTSLGIGGHITGGAYGPMMRKYGLGADNVVDARIVDVSGRVLDRALMGEDLFWAIRGGGGGSFGIILAWKVRLVPVPSTVTVFTVPKTLETGATKVLHKWQHVAHKIDEDLFIRILITTVNSTKGKKTVQTAYQALFLGKTDRLLDVMNH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93446" PGL_stop="92940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93446" e_stop="92940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="93446" e_stop="92940" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93446" stop="92940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGTGCACCCACCCTCGTCATACCCCACTAGGTTTGTTGTTGTTCCTCAAATTTGTTTCACATTTCATATCAATACAAACTTCTGCTACAATACATTACATGTCATGAAACCAAATGAAAAGCAAAACTTAAACTTATTTTTACTTTTTTCCTTAAATATTACAATACACCATCAAGCCAAATGCAGTTCTTCAGTGAATCAAACTTTTCCCATCTTGACCAACTTTGAATGGAAGGATTGGTAGACTCTGTTCATGCCAGAAGAAGTTATCAGGATCAACCTTAGTCTTGACAAGCACAAGCCTGTCATAATTGTTCTTGTAGTACTTTTTCCCCCAGACACTAGCTTCCAAGATATTTGAGTTGGCATTTTTGTTCATACCCAGATCAAGATCTCTATAATTCACATAAGCTTCTCTAGGGTACTTGGATACAAAAGTGCCCATGTACTCATAAAGTCCTCTGATCCAGTTGATATGTTTATCTGCAGTTTTCTTGTCTCCATCT</gDNA_template>
            <first_frame> T  C  T  H  P  R  H  T  P  L  G  L  L  L  F  L  K  F  V  S  H  F  I  S  I  Q  T  S  A  T  I  H  Y  M  S  *  N  Q  M  K  S  K  T  *  T  Y  F  Y  F  F  P  *  I  L  Q  Y  T  I  K  P  N  A  V  L  Q  *  I  K  L  F  P  S  *  P  T  L  N  G  R  I  G  R  L  C  S  C  Q  K  K  L  S  G  S  T  L  V  L  T  S  T  S  L  S  *  L  F  L  *  Y  F  F  P  Q  T  L  A  S  K  I  F  E  L  A  F  L  F  I  P  R  S  R  S  L  *  F  T  *  A  S  L  G  Y  L  D  T  K  V  P  M  Y  S  *  S  P  L  I  Q  L  I  C  L  S  A  V  F  L  S  P  S </first_frame>
            <second_frame>  R  A  P  T  L  V  I  P  H  *  V  C  C  C  S  S  N  L  F  H  I  S  Y  Q  Y  K  L  L  L  Q  Y  I  T  C  H  E  T  K  *  K  A  K  L  K  L  I  F  T  F  F  L  K  Y  Y  N  T  P  S  S  Q  M  Q  F  F  S  E  S  N  F  S  H  L  D  Q  L  *  M  E  G  L  V  D  S  V  H  A  R  R  S  Y  Q  D  Q  P  *  S  *  Q  A  Q  A  C  H  N  C  S  C  S  T  F  S  P  R  H  *  L  P  R  Y  L  S  W  H  F  C  S  Y  P  D  Q  D  L  Y  N  S  H  K  L  L  *  G  T  W  I  Q  K  C  P  C  T  H  K  V  L  *  S  S  *  Y  V  Y  L  Q  F  S  C  L  H   </second_frame>
            <third_frame>   V  H  P  P  S  S  Y  P  T  R  F  V  V  V  P  Q  I  C  F  T  F  H  I  N  T  N  F  C  Y  N  T  L  H  V  M  K  P  N  E  K  Q  N  L  N  L  F  L  L  F  S  L  N  I  T  I  H  H  Q  A  K  C  S  S  S  V  N  Q  T  F  P  I  L  T  N  F  E  W  K  D  W  *  T  L  F  M  P  E  E  V  I  R  I  N  L  S  L  D  K  H  K  P  V  I  I  V  L  V  V  L  F  P  P  D  T  S  F  Q  D  I  *  V  G  I  F  V  H  T  Q  I  K  I  S  I  I  H  I  S  F  S  R  V  L  G  Y  K  S  A  H  V  L  I  K  S  S  D  P  V  D  M  F  I  C  S  F  L  V  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93444" stop="93202"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHPPSSYPTRFVVVPQICFTFHINTNFCYNTLHVMKPNEKQNLNLFLLFSLNITIHHQAKCSSSVNQTFPILTNFEWKDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="98068" PGL_stop="93460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98068" e_stop="97871"/>
            <exon e_start="97779" e_stop="97735"/>
            <exon e_start="96284" e_stop="96250"/>
            <exon e_start="96069" e_stop="96019"/>
            <exon e_start="95136" e_stop="95032"/>
            <exon e_start="94942" e_stop="94871"/>
            <exon e_start="94714" e_stop="94643"/>
            <exon e_start="94480" e_stop="94400"/>
            <exon e_start="94315" e_stop="94280"/>
            <exon e_start="94181" e_stop="94120"/>
            <exon e_start="93760" e_stop="93460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.914"/>
          <exon-intron don_prob="0.980" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.380" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.963"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="98068" e_stop="97871" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97870" i_stop="97780" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97779" e_stop="97735" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.982">
            <gDNA_intron_boundary i_start="97734" i_stop="96285" i_length="1450"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="96284" e_stop="96250" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96249" i_stop="96070" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96069" e_stop="96019" e_length="51"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="96018" i_stop="95137" i_length="882"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="95136" e_stop="95032" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95031" i_stop="94943" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94942" e_stop="94871" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="94870" i_stop="94715" i_length="156"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94714" e_stop="94643" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.737">
            <gDNA_intron_boundary i_start="94642" i_stop="94481" i_length="162"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94480" e_stop="94400" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94399" i_stop="94316" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.972">
            <gDNA_exon_boundary e_start="94315" e_stop="94280" e_length="36"/>
          </exon>
          <intron i_serial="9" don_prob="0.380" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94279" i_stop="94182" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="0.963">
            <gDNA_exon_boundary e_start="94181" e_stop="94120" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94119" i_stop="93761" i_length="359"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="93760" e_stop="93460" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98068" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98040" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94280"/>
              <exon start="94181" stop="94123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98008" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94280"/>
              <exon start="94181" stop="94128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97960" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97936" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97930" stop="97871"/>
              <exon start="97779" stop="97735"/>
              <exon start="96284" stop="96250"/>
              <exon start="96069" stop="96019"/>
              <exon start="95136" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94280"/>
              <exon start="94181" stop="94120"/>
              <exon start="93760" stop="93729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95039" stop="95032"/>
              <exon start="94942" stop="94871"/>
              <exon start="94714" stop="94643"/>
              <exon start="94480" stop="94400"/>
              <exon start="94315" stop="94280"/>
              <exon start="94181" stop="94120"/>
              <exon start="93760" stop="93460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCACAAAAATTCCAAAAAACAAAGGGAAAAAAACCCCATTTTTAATCACCCATTTTCATGATTCAGCTTTTCTTCAAAAGCCATTAGGGTTTTTTTCCTCTTCCATTTCAAGAAAATTCTAGGGTTCAAGAATCATTAACAAAAGAAGATGGAGAAGTTGAACAGCATTTTCAAGAAGAAGACTTCACCAAAAG : AAGCATTGAGGACCAGCAAAAGGGAAATGGCTGTTGCTACCAGAG : GCATCGAACGGGAGATCTCATCCTTACAAATGGAG : GAGAAAAAGTTAGTTGCAGAGATCAAGCAAACAGCCAAAACAGGAAACGAG : GCAGCCACCAAAATTCTAGCTCGTCAACTTGTGAGGTTACGGCAACAAATTGTCAATTTGCAAGGTAGTCGTGCTCAAATTAGGGGTGTAGCAACTCATACACAG : GCACTATATGCTAGCACCTCTATGTCTACTGGAATGAAAGGTGCAACTAAAGCGATGTCTGCCATGAACAAG : CAAATGGCACCTGCAAAACAAGTTAAAGTGATCAGAGAATTCCAGAAGCAGTCATCACAGTTGGACATGACA : ATTGAGATGATGTCTGAATCCATTGATGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAACCAG : GTGCTTGACGAGATTGGTGTGGACATTGCATCACAG : TTATCTTCAGCTCCAAAAGGCCGGATTGCATCGAAGAAAGTTGAAAATGTTGCCCCCCCTAG : TTCTGATACTGCTGCAGATGTCGAGGAACTTGAGAAGAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGGACAACTTTTATATGATCCTTGTACAAATTTCGCTTTTAGAATTAAAAATATAGTATGTATTATGGTACCAATTTGTATTTCTCAACTATAATCCTATAGCACCAAACATGACATTTATGCTGTAAGAATGAAGTGGATCCTTTTTGGGTTTTATGATCCTTCTCCATGTAAGTTTTGTATGTAGTTCCTTGAATTCATTGATATACCTTACCCTCACAAGGTAGA</gDNA_template>
            <first_frame> F  L  T  K  I  P  K  N  K  G  K  K  T  P  F  L  I  T  H  F  H  D  S  A  F  L  Q  K  P  L  G  F  F  S  S  S  I  S  R  K  F  *  G  S  R  I  I  N  K  R  R  W  R  S  *  T  A  F  S  R  R  R  L  H  Q  K  :  K  H  *  G  P  A  K  G  K  W  L  L  L  P  E  :  A  S  N  G  R  S  H  P  Y  K  W  R :   R  K  S  *  L  Q  R  S  S  K  Q  P  K  Q  E  T  R :   Q  P  P  K  F  *  L  V  N  L  *  G  Y  G  N  K  L  S  I  C  K  V  V  V  L  K  L  G  V  *  Q  L  I  H  R :   H  Y  M  L  A  P  L  C  L  L  E  *  K  V  Q  L  K  R  C  L  P  *  T  S :   K  W  H  L  Q  N  K  L  K  *  S  E  N  S  R  S  S  H  H  S  W  T  *  Q :   L  R  *  C  L  N  P  L  M  R  L  W  I  K  M  K  L  K  K  K  L  R  S  L  Q  T  R :   C  L  T  R  L  V  W  T  L  H  H  S :   Y  L  Q  L  Q  K  A  G  L  H  R  R  K  L  K  M  L  P  P  L   : V  L  I  L  L  Q  M  S  R  N  L  R  R  G  W  P  L  F  E  E  F  D  E  E  R  G  Q  L  L  Y  D  P  C  T  N  F  A  F  R  I  K  N  I  V  C  I  M  V  P  I  C  I  S  Q  L  *  S  Y  S  T  K  H  D  I  Y  A  V  R  M  K  W  I  L  F  G  F  Y  D  P  S  P  C  K  F  C  M  *  F  L  E  F  I  D  I  P  Y  P  H  K  V   </first_frame>
            <second_frame>  F  S  Q  K  F  Q  K  T  K  G  K  K  P  H  F  *  S  P  I  F  M  I  Q  L  F  F  K  S  H  *  G  F  F  P  L  P  F  Q  E  N  S  R  V  Q  E  S  L  T  K  E  D  G  E  V  E  Q  H  F  Q  E  E  D  F  T  K  R :   S  I  E  D  Q  Q  K  G  N  G  C  C  Y  Q  R :   H  R  T  G  D  L  I  L  T  N  G   : G  E  K  V  S  C  R  D  Q  A  N  S  Q  N  R  K  R   : G  S  H  Q  N  S  S  S  S  T  C  E  V  T  A  T  N  C  Q  F  A  R  *  S  C  S  N  *  G  C  S  N  S  Y  T   : G  T  I  C  *  H  L  Y  V  Y  W  N  E  R  C  N  *  S  D  V  C  H  E  Q   : A  N  G  T  C  K  T  S  *  S  D  Q  R  I  P  E  A  V  I  T  V  G  H  D   : N  *  D  D  V  *  I  H  *  *  D  F  G  *  R  *  S  *  R  R  N  *  G  A  Y  K  P   : G  A  *  R  D  W  C  G  H  C  I  T   : V  I  F  S  S  K  R  P  D  C  I  E  E  S  *  K  C  C  P  P  *  :  F  *  Y  C  C  R  C  R  G  T  *  E  E  V  G  L  S  S  K  N  L  M  K  N  V  D  N  F  Y  M  I  L  V  Q  I  S  L  L  E  L  K  I  *  Y  V  L  W  Y  Q  F  V  F  L  N  Y  N  P  I  A  P  N  M  T  F  M  L  *  E  *  S  G  S  F  L  G  F  M  I  L  L  H  V  S  F  V  C  S  S  L  N  S  L  I  Y  L  T  L  T  R  *  </second_frame>
            <third_frame>   S  H  K  N  S  K  K  Q  R  E  K  N  P  I  F  N  H  P  F  S  *  F  S  F  S  S  K  A  I  R  V  F  F  L  F  H  F  K  K  I  L  G  F  K  N  H  *  Q  K  K  M  E  K  L  N  S  I  F  K  K  K  T  S  P  K   : E  A  L  R  T  S  K  R  E  M  A  V  A  T  R   : G  I  E  R  E  I  S  S  L  Q  M  E  :  E  K  K  L  V  A  E  I  K  Q  T  A  K  T  G  N  E  :  A  A  T  K  I  L  A  R  Q  L  V  R  L  R  Q  Q  I  V  N  L  Q  G  S  R  A  Q  I  R  G  V  A  T  H  T  Q  :  A  L  Y  A  S  T  S  M  S  T  G  M  K  G  A  T  K  A  M  S  A  M  N  K  :  Q  M  A  P  A  K  Q  V  K  V  I  R  E  F  Q  K  Q  S  S  Q  L  D  M  T  :  I  E  M  M  S  E  S  I  D  E  T  L  D  K  D  E  A  E  E  E  T  E  E  L  T  N  Q  :  V  L  D  E  I  G  V  D  I  A  S  Q  :  L  S  S  A  P  K  G  R  I  A  S  K  K  V  E  N  V  A  P  P  S :   S  D  T  A  A  D  V  E  E  L  E  K  R  L  A  S  L  R  R  I  *  *  R  T  W  T  T  F  I  *  S  L  Y  K  F  R  F  *  N  *  K  Y  S  M  Y  Y  G  T  N  L  Y  F  S  T  I  I  L  *  H  Q  T  *  H  L  C  C  K  N  E  V  D  P  F  W  V  L  *  S  F  S  M  *  V  L  Y  V  V  P  *  I  H  *  Y  T  L  P  S  Q  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97925" stop="97871"/>
                    <exon start="97779" stop="97735"/>
                    <exon start="96284" stop="96250"/>
                    <exon start="96069" stop="96019"/>
                    <exon start="95136" stop="95032"/>
                    <exon start="94942" stop="94871"/>
                    <exon start="94714" stop="94643"/>
                    <exon start="94480" stop="94400"/>
                    <exon start="94315" stop="94280"/>
                    <exon start="94181" stop="94120"/>
                    <exon start="93760" stop="93697"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMEKLNSIFKKKTSPKEALRTSKREMAVATRGIEREISSLQMEEKKLVAEIKQTAKTGNEAATKILARQLVRLRQQIVNLQGSRAQIRGVATHTQALYASTSMSTGMKGATKAMSAMNKQMAPAKQVKVIREFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASKKVENVAPPSSDTAADVEELEKRLASLRRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="102262" PGL_stop="104291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102262" e_stop="102439"/>
            <exon e_start="102559" e_stop="103205"/>
            <exon e_start="103536" e_stop="103880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.764" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102262" e_stop="102439" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102559" e_stop="103205" e_length="647"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.764">
            <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103536" e_stop="103880" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102262" stop="102439"/>
              <exon start="102559" stop="103205"/>
              <exon start="103536" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102269" stop="102439"/>
              <exon start="102559" stop="103080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102269" stop="102439"/>
              <exon start="102559" stop="102994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102666" stop="103205"/>
              <exon start="103536" stop="103880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102666" stop="103205"/>
              <exon start="103536" stop="103856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAG : GAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG : CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTGGTTTGACCTCTTCAATTACTCT</gDNA_template>
            <first_frame> V  E  S  Y  A  K  A  R  I  P  L  E  V  M  W  T  D  I  D  Y  M  D  G  F  K  D  F  T  L  D  P  V  N  F  P  L  E  R  V  N  F  F  L  R  K  L  H  Q  N  D  Q  K  Y  V  L  I  V  D  P   : G  I  S  I  N  N  T  Y  D  T  Y  R  R  G  M  E  A  D  V  F  I  K  R  D  N  M  P  H  Q  G  V  V  W  P  G  N  V  Y  Y  P  D  F  L  N  P  A  T  E  V  F  W  R  N  E  I  E  K  F  Q  D  L  V  P  F  D  G  L  W  L  D  M  N  E  L  S  N  F  I  T  S  P  P  T  P  S  S  T  F  D  D  P  P  Y  K  I  N  N  S  G  D  H  L  P  I  N  Y  R  T  V  P  A  T  S  T  H  F  G  N  T  I  D  Y  N  V  H  N  L  Y  G  L  L  E  S  R  A  T  Y  S  A  L  V  N  V  T  G  K  R  P  F  I  L  A  R  S  T  F  L  G  S  G  R  Y  T  S  H  W  T  G  D  N  A  A  T  W  N  D  L  A  Y  S  I  P  T  I  L  N  F  G  L  F  G  I  P  M  V  G  A  D  I  C  G  F  S  S  N  T  T  E  E  L  C  R  R  W  I  Q  :  L  G  A  F  Y  P  F  A  R  D  H  S  A  K  D  T  T  P  Q  E  L  Y  S  W  D  S  V  A  A  A  A  K  K  V  L  G  L  R  Y  Q  L  L  P  Y  F  Y  M  L  M  Y  K  A  H  T  K  G  T  P  I  A  R  P  L  F  F  S  F  P  Q  D  A  K  T  F  D  I  S  T  Q  F  L  L  G  K  G  V  M  I  S  P  V  L  K  Q  G  A  T  S  V  D  A  Y  F  P  A  G  N  W  F  D  L  F  N  Y  S </first_frame>
            <second_frame>  W  K  V  M  Q  R  L  G  Y  R  W  R  L  C  G  L  I  L  I  T  W  M  V  L  R  T  S  H  S  I  Q  L  T  S  H  W  S  G  *  I  F  F  S  G  S  F  I  R  M  I  R  N  M  Y  *  *  *  I  Q  :  E  L  V  S  T  I  H  M  T  P  I  G  E  A  W  K  Q  M  S  S  *  N  A  I  I  C  P  T  K  G  L  F  G  Q  G  M  F  T  I  L  I  F  *  I  Q  L  L  K  Y  F  G  E  M  K  L  R  S  S  R  I  S  Y  L  L  M  A  C  G  L  T  *  M  N  C  Q  T  S  L  L  P  L  L  H  H  H  P  P  L  M  T  L  R  T  R  *  T  T  L  A  I  T  C  P  S  T  I  E  Q  F  Q  P  L  Q  H  I  L  V  I  Q  *  I  I  M  S  I  T  F  M  D  Y  *  N  L  E  P  P  I  V  L  W  L  M  S  L  V  K  G  H  S  F  L  Q  D  Q  L  F  L  A  L  A  D  I  R  H  I  G  L  E  T  M  L  L  H  G  M  I  W  H  T  P  F  L  L  S  *  T  L  D  C  L  E  F  Q  W  L  E  L  I  Y  V  V  F  Q  V  T  L  L  K  S  F  A  A  A  G  F  S :   L  E  H  S  I  H  L  Q  E  T  T  L  L  R  T  Q  P  P  K  S  S  I  V  G  I  Q  L  L  Q  R  P  R  K  S  L  G  S  D  I  S  Y  F  R  T  F  I  C  L  C  T  R  H  I  Q  K  G  L  P  L  H  D  P  S  S  S  L  S  L  K  M  P  R  H  L  I  S  A  R  S  S  F  S  V  K  V  S  *  S  H  L  Y  L  S  K  E  Q  P  L  L  M  H  I  S  L  L  E  T  G  L  T  S  S  I  T   </second_frame>
            <third_frame>   G  K  L  C  K  G  *  D  T  A  G  G  Y  V  D  *  Y  *  L  H  G  W  F  *  G  L  H  T  R  S  S  *  L  P  T  G  A  G  K  F  F  S  Q  E  A  S  S  E  *  S  E  I  C  T  N  S  R  S  R :   N  *  Y  Q  Q  Y  I  *  H  L  *  E  R  H  G  S  R  C  L  H  K  T  R  *  Y  A  P  P  R  G  C  L  A  R  E  C  L  L  S  *  F  S  K  S  S  Y  *  S  I  L  E  K  *  N  *  E  V  P  G  S  R  T  F  *  W  P  V  A  *  H  E  *  I  V  K  L  H  Y  F  P  S  Y  T  I  I  H  L  *  *  P  S  V  Q  D  K  Q  L  W  R  S  L  A  H  Q  L  *  N  S  S  S  H  F  N  T  F  W  *  Y  N  R  L  *  C  P  *  P  L  W  I  T  R  I  *  S  H  L  *  C  F  G  *  C  H  W  *  K  A  I  H  S  C  K  I  N  F  S  W  L  W  Q  I  Y  V  T  L  D  W  R  Q  C  C  Y  M  E  *  F  G  I  L  H  S  Y  Y  L  E  L  W  I  V  W  N  S  N  G  W  S  *  Y  M  W  F  F  K  *  H  Y  *  R  A  L  P  P  L  D  S   : A  W  S  I  L  S  I  C  K  R  P  L  C  *  G  H  N  P  P  R  A  L  *  L  G  F  S  C  C  S  G  Q  E  S  P  W  A  P  I  S  V  T  S  V  L  L  Y  A  Y  V  Q  G  T  Y  K  R  D  S  H  C  T  T  P  L  L  L  F  P  S  R  C  Q  D  I  *  Y  Q  H  A  V  P  S  R  *  R  C  H  D  L  T  C  T  *  A  R  S  N  L  C  *  C  I  F  P  C  W  K  L  V  *  P  L  Q  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102262" stop="102439"/>
                    <exon start="102559" stop="103205"/>
                    <exon start="103536" stop="103880"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1170</number_coding_nucleotides>
                  <number_encoded_amino_acids>390</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VESYAKARIPLEVMWTDIDYMDGFKDFTLDPVNFPLERVNFFLRKLHQNDQKYVLIVDPGISINNTYDTYRRGMEADVFIKRDNMPHQGVVWPGNVYYPDFLNPATEVFWRNEIEKFQDLVPFDGLWLDMNELSNFITSPPTPSSTFDDPPYKINNSGDHLPINYRTVPATSTHFGNTIDYNVHNLYGLLESRATYSALVNVTGKRPFILARSTFLGSGRYTSHWTGDNAATWNDLAYSIPTILNFGLFGIPMVGADICGFSSNTTEELCRRWIQLGAFYPFARDHSAKDTTPQELYSWDSVAAAAKKVLGLRYQLLPYFYMLMYKAHTKGTPIARPLFFSFPQDAKTFDISTQFLLGKGVMISPVLKQGATSVDAYFPAGNWFDLFNYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102262" e_stop="102439"/>
            <exon e_start="102559" e_stop="103205"/>
            <exon e_start="103536" e_stop="103858"/>
            <exon e_start="103933" e_stop="104291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102262" e_stop="102439" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102440" i_stop="102558" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102559" e_stop="103205" e_length="647"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.764">
            <gDNA_intron_boundary i_start="103206" i_stop="103535" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103536" e_stop="103858" e_length="323"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103859" i_stop="103932" i_length="74"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103933" e_stop="104291" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102262" stop="102439"/>
              <exon start="102559" stop="103205"/>
              <exon start="103536" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102269" stop="102439"/>
              <exon start="102559" stop="103080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102269" stop="102439"/>
              <exon start="102559" stop="102994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102666" stop="103205"/>
              <exon start="103536" stop="103856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103061" stop="103205"/>
              <exon start="103536" stop="103858"/>
              <exon start="103933" stop="104291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAAAGTTATGCAAAGGCTAGGATACCGCTGGAGGTTATGTGGACTGATATTGATTACATGGATGGTTTTAAGGACTTCACACTCGATCCAGTTAACTTCCCACTGGAGCGGGTAAATTTTTTTCTCAGGAAGCTTCATCAGAATGATCAGAAATATGTACTAATAGTAGATCCAG : GAATTAGTATCAACAATACATATGACACCTATAGGAGAGGCATGGAAGCAGATGTCTTCATAAAACGCGATAATATGCCCCACCAAGGGGTTGTTTGGCCAGGGAATGTTTACTATCCTGATTTTCTAAATCCAGCTACTGAAGTATTTTGGAGAAATGAAATTGAGAAGTTCCAGGATCTCGTACCTTTTGATGGCCTGTGGCTTGACATGAATGAATTGTCAAACTTCATTACTTCCCCTCCTACACCATCATCCACCTTTGATGACCCTCCGTACAAGATAAACAACTCTGGCGATCACTTGCCCATCAACTATAGAACAGTTCCAGCCACTTCAACACATTTTGGTAATACAATAGATTATAATGTCCATAACCTTTATGGATTACTAGAATCTAGAGCCACCTATAGTGCTTTGGTTAATGTCACTGGTAAAAGGCCATTCATTCTTGCAAGATCAACTTTTCTTGGCTCTGGCAGATATACGTCACATTGGACTGGAGACAATGCTGCTACATGGAATGATTTGGCATACTCCATTCCTACTATCTTGAACTTTGGATTGTTTGGAATTCCAATGGTTGGAGCTGATATATGTGGTTTTTCAAGTAACACTACTGAAGAGCTTTGCCGCCGCTGGATTCAG : CTTGGAGCATTCTATCCATTTGCAAGAGACCACTCTGCTAAGGACACAACCCCCCAAGAGCTCTATAGTTGGGATTCAGTTGCTGCAGCGGCCAAGAAAGTCCTTGGGCTCCGATATCAGTTACTTCCGTACTTTTATATGCTTATGTACAAGGCACATACAAAAGGGACTCCCATTGCACGACCCCTCTTCTTCTCTTTCCCTCAAGATGCCAAGACATTTGATATCAGCACGCAGTTCCTTCTCGGTAAAGGTGTCATGATCTCACCTGTACTTAAGCAAGGAGCAACCTCTGTTGATGCATATTTCCCTGCTGGAAACTG : ATCATATAAATGTACACGTTCGTGAAGGGAACATATTGGTCATGCAAGGGGAAGCAATGACAACACAAGCTGCACAGAGGACTGCATTCAAACTCCTTGTCGTGCTGAGCAGCAGCGAAAACAGCACAGGAGAACTATTTGTGGACGATGACGATGAGGTGCAGATGGGAAGAGAGGGAGGGAGGTGGACGTTCGTTAAGTTTAACAGCAATATCATTGGCAATAAAATTGTGGTTAAATCAGAGGTTGTGAATGGACGGTACGCGCTGGATCAAGGATTGGTCCTTGAAAAGATGACATTATTAGGTTTGGAAAATGTGAGAGGATTGAAGAGCTATGAGCTTGTTGGATCACACCAG</gDNA_template>
            <first_frame> V  E  S  Y  A  K  A  R  I  P  L  E  V  M  W  T  D  I  D  Y  M  D  G  F  K  D  F  T  L  D  P  V  N  F  P  L  E  R  V  N  F  F  L  R  K  L  H  Q  N  D  Q  K  Y  V  L  I  V  D  P   : G  I  S  I  N  N  T  Y  D  T  Y  R  R  G  M  E  A  D  V  F  I  K  R  D  N  M  P  H  Q  G  V  V  W  P  G  N  V  Y  Y  P  D  F  L  N  P  A  T  E  V  F  W  R  N  E  I  E  K  F  Q  D  L  V  P  F  D  G  L  W  L  D  M  N  E  L  S  N  F  I  T  S  P  P  T  P  S  S  T  F  D  D  P  P  Y  K  I  N  N  S  G  D  H  L  P  I  N  Y  R  T  V  P  A  T  S  T  H  F  G  N  T  I  D  Y  N  V  H  N  L  Y  G  L  L  E  S  R  A  T  Y  S  A  L  V  N  V  T  G  K  R  P  F  I  L  A  R  S  T  F  L  G  S  G  R  Y  T  S  H  W  T  G  D  N  A  A  T  W  N  D  L  A  Y  S  I  P  T  I  L  N  F  G  L  F  G  I  P  M  V  G  A  D  I  C  G  F  S  S  N  T  T  E  E  L  C  R  R  W  I  Q  :  L  G  A  F  Y  P  F  A  R  D  H  S  A  K  D  T  T  P  Q  E  L  Y  S  W  D  S  V  A  A  A  A  K  K  V  L  G  L  R  Y  Q  L  L  P  Y  F  Y  M  L  M  Y  K  A  H  T  K  G  T  P  I  A  R  P  L  F  F  S  F  P  Q  D  A  K  T  F  D  I  S  T  Q  F  L  L  G  K  G  V  M  I  S  P  V  L  K  Q  G  A  T  S  V  D  A  Y  F  P  A  G  N  * :   S  Y  K  C  T  R  S  *  R  E  H  I  G  H  A  R  G  S  N  D  N  T  S  C  T  E  D  C  I  Q  T  P  C  R  A  E  Q  Q  R  K  Q  H  R  R  T  I  C  G  R  *  R  *  G  A  D  G  K  R  G  R  E  V  D  V  R  *  V  *  Q  Q  Y  H  W  Q  *  N  C  G  *  I  R  G  C  E  W  T  V  R  A  G  S  R  I  G  P  *  K  D  D  I  I  R  F  G  K  C  E  R  I  E  E  L  *  A  C  W  I  T  P  </first_frame>
            <second_frame>  W  K  V  M  Q  R  L  G  Y  R  W  R  L  C  G  L  I  L  I  T  W  M  V  L  R  T  S  H  S  I  Q  L  T  S  H  W  S  G  *  I  F  F  S  G  S  F  I  R  M  I  R  N  M  Y  *  *  *  I  Q  :  E  L  V  S  T  I  H  M  T  P  I  G  E  A  W  K  Q  M  S  S  *  N  A  I  I  C  P  T  K  G  L  F  G  Q  G  M  F  T  I  L  I  F  *  I  Q  L  L  K  Y  F  G  E  M  K  L  R  S  S  R  I  S  Y  L  L  M  A  C  G  L  T  *  M  N  C  Q  T  S  L  L  P  L  L  H  H  H  P  P  L  M  T  L  R  T  R  *  T  T  L  A  I  T  C  P  S  T  I  E  Q  F  Q  P  L  Q  H  I  L  V  I  Q  *  I  I  M  S  I  T  F  M  D  Y  *  N  L  E  P  P  I  V  L  W  L  M  S  L  V  K  G  H  S  F  L  Q  D  Q  L  F  L  A  L  A  D  I  R  H  I  G  L  E  T  M  L  L  H  G  M  I  W  H  T  P  F  L  L  S  *  T  L  D  C  L  E  F  Q  W  L  E  L  I  Y  V  V  F  Q  V  T  L  L  K  S  F  A  A  A  G  F  S :   L  E  H  S  I  H  L  Q  E  T  T  L  L  R  T  Q  P  P  K  S  S  I  V  G  I  Q  L  L  Q  R  P  R  K  S  L  G  S  D  I  S  Y  F  R  T  F  I  C  L  C  T  R  H  I  Q  K  G  L  P  L  H  D  P  S  S  S  L  S  L  K  M  P  R  H  L  I  S  A  R  S  S  F  S  V  K  V  S  *  S  H  L  Y  L  S  K  E  Q  P  L  L  M  H  I  S  L  L  E  T   : D  H  I  N  V  H  V  R  E  G  N  I  L  V  M  Q  G  E  A  M  T  T  Q  A  A  Q  R  T  A  F  K  L  L  V  V  L  S  S  S  E  N  S  T  G  E  L  F  V  D  D  D  D  E  V  Q  M  G  R  E  G  G  R  W  T  F  V  K  F  N  S  N  I  I  G  N  K  I  V  V  K  S  E  V  V  N  G  R  Y  A  L  D  Q  G  L  V  L  E  K  M  T  L  L  G  L  E  N  V  R  G  L  K  S  Y  E  L  V  G  S  H  Q </second_frame>
            <third_frame>   G  K  L  C  K  G  *  D  T  A  G  G  Y  V  D  *  Y  *  L  H  G  W  F  *  G  L  H  T  R  S  S  *  L  P  T  G  A  G  K  F  F  S  Q  E  A  S  S  E  *  S  E  I  C  T  N  S  R  S  R :   N  *  Y  Q  Q  Y  I  *  H  L  *  E  R  H  G  S  R  C  L  H  K  T  R  *  Y  A  P  P  R  G  C  L  A  R  E  C  L  L  S  *  F  S  K  S  S  Y  *  S  I  L  E  K  *  N  *  E  V  P  G  S  R  T  F  *  W  P  V  A  *  H  E  *  I  V  K  L  H  Y  F  P  S  Y  T  I  I  H  L  *  *  P  S  V  Q  D  K  Q  L  W  R  S  L  A  H  Q  L  *  N  S  S  S  H  F  N  T  F  W  *  Y  N  R  L  *  C  P  *  P  L  W  I  T  R  I  *  S  H  L  *  C  F  G  *  C  H  W  *  K  A  I  H  S  C  K  I  N  F  S  W  L  W  Q  I  Y  V  T  L  D  W  R  Q  C  C  Y  M  E  *  F  G  I  L  H  S  Y  Y  L  E  L  W  I  V  W  N  S  N  G  W  S  *  Y  M  W  F  F  K  *  H  Y  *  R  A  L  P  P  L  D  S   : A  W  S  I  L  S  I  C  K  R  P  L  C  *  G  H  N  P  P  R  A  L  *  L  G  F  S  C  C  S  G  Q  E  S  P  W  A  P  I  S  V  T  S  V  L  L  Y  A  Y  V  Q  G  T  Y  K  R  D  S  H  C  T  T  P  L  L  L  F  P  S  R  C  Q  D  I  *  Y  Q  H  A  V  P  S  R  *  R  C  H  D  L  T  C  T  *  A  R  S  N  L  C  *  C  I  F  P  C  W  K  L  :  I  I  *  M  Y  T  F  V  K  G  T  Y  W  S  C  K  G  K  Q  *  Q  H  K  L  H  R  G  L  H  S  N  S  L  S  C  *  A  A  A  K  T  A  Q  E  N  Y  L  W  T  M  T  M  R  C  R  W  E  E  R  E  G  G  G  R  S  L  S  L  T  A  I  S  L  A  I  K  L  W  L  N  Q  R  L  *  M  D  G  T  R  W  I  K  D  W  S  L  K  R  *  H  Y  *  V  W  K  M  *  E  D  *  R  A  M  S  L  L  D  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102262" stop="102439"/>
                    <exon start="102559" stop="103205"/>
                    <exon start="103536" stop="103933"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VESYAKARIPLEVMWTDIDYMDGFKDFTLDPVNFPLERVNFFLRKLHQNDQKYVLIVDPGISINNTYDTYRRGMEADVFIKRDNMPHQGVVWPGNVYYPDFLNPATEVFWRNEIEKFQDLVPFDGLWLDMNELSNFITSPPTPSSTFDDPPYKINNSGDHLPINYRTVPATSTHFGNTIDYNVHNLYGLLESRATYSALVNVTGKRPFILARSTFLGSGRYTSHWTGDNAATWNDLAYSIPTILNFGLFGIPMVGADICGFSSNTTEELCRRWIQLGAFYPFARDHSAKDTTPQELYSWDSVAAAAKKVLGLRYQLLPYFYMLMYKAHTKGTPIARPLFFSFPQDAKTFDISTQFLLGKGVMISPVLKQGATSVDAYFPAGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="104496" PGL_stop="103930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104496" e_stop="103930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="104496" e_stop="103930" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104496" stop="103930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACATAATATCATAAATTAAACGGCATTGATAGTGTGAGAAAATTTCATACAGCAAGCTTATATAACACAATTCATTTGTTTAAGTAATGATGTATAGCTCCAATTTGAACTCTTTCCCTATCAGTATTGACATCTCTGAGATTTCCATAGCAACAAACTGTCCACTCTGTTTAAGTTTTTCCTTCATTGTTGTGTTCCCTTGCTGGTGTGATCCAACAAGCTCATAGCTCTTCAATCCTCTCACATTTTCCAAACCTAATAATGTCATCTTTTCAAGGACCAATCCTTGATCCAGCGCGTACCGTCCATTCACAACCTCTGATTTAACCACAATTTTATTGCCAATGATATTGCTGTTAAACTTAACGAACGTCCACCTCCCTCCCTCTCTTCCCATCTGCACCTCATCGTCATCGTCCACAAATAGTTCTCCTGTGCTGTTTTCGCTGCTGCTCAGCACGACAAGGAGTTTGAATGCAGTCCTCTGTGCAGCTTGTGTTGTCATTGCTTCCCCTTGCATGACCAATATGTTCCCTTCACGAACGTGTACATTTATATGATCTG</gDNA_template>
            <first_frame> R  T  *  Y  H  K  L  N  G  I  D  S  V  R  K  F  H  T  A  S  L  Y  N  T  I  H  L  F  K  *  *  C  I  A  P  I  *  T  L  S  L  S  V  L  T  S  L  R  F  P  *  Q  Q  T  V  H  S  V  *  V  F  P  S  L  L  C  S  L  A  G  V  I  Q  Q  A  H  S  S  S  I  L  S  H  F  P  N  L  I  M  S  S  F  Q  G  P  I  L  D  P  A  R  T  V  H  S  Q  P  L  I  *  P  Q  F  Y  C  Q  *  Y  C  C  *  T  *  R  T  S  T  S  L  P  L  F  P  S  A  P  H  R  H  R  P  Q  I  V  L  L  C  C  F  R  C  C  S  A  R  Q  G  V  *  M  Q  S  S  V  Q  L  V  L  S  L  L  P  L  A  *  P  I  C  S  L  H  E  R  V  H  L  Y  D  L </first_frame>
            <second_frame>  E  H  N  I  I  N  *  T  A  L  I  V  *  E  N  F  I  Q  Q  A  Y  I  T  Q  F  I  C  L  S  N  D  V  *  L  Q  F  E  L  F  P  Y  Q  Y  *  H  L  *  D  F  H  S  N  K  L  S  T  L  F  K  F  F  L  H  C  C  V  P  L  L  V  *  S  N  K  L  I  A  L  Q  S  S  H  I  F  Q  T  *  *  C  H  L  F  K  D  Q  S  L  I  Q  R  V  P  S  I  H  N  L  *  F  N  H  N  F  I  A  N  D  I  A  V  K  L  N  E  R  P  P  P  S  L  S  S  H  L  H  L  I  V  I  V  H  K  *  F  S  C  A  V  F  A  A  A  Q  H  D  K  E  F  E  C  S  P  L  C  S  L  C  C  H  C  F  P  L  H  D  Q  Y  V  P  F  T  N  V  Y  I  Y  M  I   </second_frame>
            <third_frame>   N  I  I  S  *  I  K  R  H  *  *  C  E  K  I  S  Y  S  K  L  I  *  H  N  S  F  V  *  V  M  M  Y  S  S  N  L  N  S  F  P  I  S  I  D  I  S  E  I  S  I  A  T  N  C  P  L  C  L  S  F  S  F  I  V  V  F  P  C  W  C  D  P  T  S  S  *  L  F  N  P  L  T  F  S  K  P  N  N  V  I  F  S  R  T  N  P  *  S  S  A  Y  R  P  F  T  T  S  D  L  T  T  I  L  L  P  M  I  L  L  L  N  L  T  N  V  H  L  P  P  S  L  P  I  C  T  S  S  S  S  S  T  N  S  S  P  V  L  F  S  L  L  L  S  T  T  R  S  L  N  A  V  L  C  A  A  C  V  V  I  A  S  P  C  M  T  N  M  F  P  S  R  T  C  T  F  I  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0155C04.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104203" stop="103934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSAYRPFTTSDLTTILLPMILLLNLTNVHLPPSLPICTSSSSSTNSSPVLFSLLLSTTRSLNAVLCAACVVIASPCMTNMFPSRTCTFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="108357" PGL_stop="108679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108357" e_stop="108679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="108357" e_stop="108679" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108357" stop="108679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108357" stop="108662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCATAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  I  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  *  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0155C04.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
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$ general statistics:
$ 161 chains have been computed
$ 
$ memory statistics:
$ 173272 bytes spliced alignments in total
$ 75 spliced alignments have been stored
$ 2310 bytes was the average size of a spliced alignment
$ 26928 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1584 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 199 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:29:09
-->
