<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:10:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600781" ref_strand="+" ref_description="SGN-U600781 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aattgttggttcttcaaatttctcaactgctgattcctcaggtttctcctcaactgatggttcttcatgtttttcatcaactgctggttcttgaactgtagcttcttcaggtttcacctcaactgttggttcctcaagtttttggtcaactacttgttcttcagttgctagttcttcaggtttcttttcaactgctagctcttcatgtgtctctttaaccactggttcttcaggtgtttctttcacctctggttcttgagattgctcctcaatcactgattcttggggtttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="2412" stop="1519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2112" g_stop="1819" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-U600781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2112" e_stop="1819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGTTCTTCAAATTTCTCAACTGCTGATTCCTCAGGTTTCTCCTCAACTGATGGTTCTTCATGTTTTTCATCAACTGCTGGTTCTTGAACTGTAGCTTCTTCAGGTTTCACCTCAACTGTTGGTTCCTCAAGTTTTTGGTCAACTACTTGTTCTTCAGTTGCTAGTTCTTCAGGTTTCTTTTCAACTGCTAGCTCTTCATGTGTCTCTTTAACCACTGGTTCTTCAGGTGTTTCTTTCACCTCTGGTTCTTGAGATTGCTCCTCAATCACTGATTCTTGGGGTTTCTC</genome_strand>
        <mrna_strand>AATTGTTGGTTCTTCAAATTTCTCAACTGCTGATTCCTCAGGTTTCTCCTCAACTGATGGTTCTTCATGTTTTTCATCAACTGCTGGTTCTTGAACTGTAGCTTCTTCAGGTTTCACCTCAACTGTTGGTTCCTCAAGTTTTTGGTCAACTACTTGTTCTTCAGTTGCTAGTTCTTCAGGTTTCTTTTCAACTGCTAGCTCTTCATGTGTCTCTTTAACCACTGGTTCTTCAGGTGTTTCTTTCACCTCTGGTTCTTGAGATTGCTCCTCAATCACTGATTCTTGGGGTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575359" ref_strand="+" ref_description="SGN-U575359 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|147783375|emb|CAN59884.1| (e_value=1e-13) hypothetical; ">
      <seq>gagatttctgaagaaaacaaagcagcagtagttacaggcaccagtatgttacaaagctgtgcaggcccacaggaacaactgaagcatcagttagctgagctaggcgaagagaaacaggcaggaggaatagcagacaccaatactgagaagccttacattgcacctgtgcaggagatcattaacaaatcacaaacagaggatatttccagtgcggattgccttgaagaagaaaatagcctcagaaccaaccaagagaagttaaaagagggagaaaattcaaaagtgaagacagatgaaaatattgacaggggagatgaattccaaagcataatgatgttgaaaggagttgaaaaggatgatcacaaccaacatataaaacacaacacatgtgcagtcatggatacagaagagcagaatgaagattcacctgctggagaacaaacatccaaaaagctagaaggactggagaaagttgatattgatgacaataacaatattaatcatcaacgtactgagacaaacctctcagaagaggccacagaatcaaagagtgaatgtgttgcgatggaaatcaagactccaatcaaagaggaggaacaagaagaagatttaagagagaccaccggtgaagattcctcaaacaacacaacacaggtgcaaaaagaggaggaaacaacaatgagtgaacccgaaagaaaaagtttggaaccttttggatcagaacgaaaaacagcagcaggtttcggagagatgataacatgcaatgagacaaaggtaacagaacatttcacatcattgaaatctgttacggtttcggagaaggagatggatgacatggtgagcaatgagagcaatacaactaagcagatacaagagcaagcagcatatcctctacttacattggagagggaggaaactattccaacaagcagcactgatgccaatggtactcccaaagacagcattaccccacatgtggaactgggtgcagaggccaaaaatatccagtacatgcaggaaaaatgcaaaatttctgaaacagaacaacatcaggaaaattatgaaaacaagaaagaagttgaatgtgattcaaaagaagtaccagaggaatccatatcgagagagacacaagctaaggccacactatctgatcttgtgcatgtatcaacaaaagaggcatcaaaaattgaggaagactttgctgaagaaagagaaggcagcgacagagaagaggagggaattcaaaaaacaagagatgagtcaagttctgaagatccagtgatcgtagaaatctccaaagatgctgatatcaaagttcctcccaagaaacatcagaacatattgtcaggagttggatcaaaagtcaagcactcaattgcaaaggtgaagaaagccatcactggtaagtcctctcagaccaagccatcatcaccaaagtaaggcggagaaaaaagataaagaattcacattatacaaagttgtaagtactcaagaaaaacaaagtgaaaagcttttcagctactctagtttttaatgaagtagaaaagtttgttcagaatgtgtgatcttattgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="+" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="3395" stop="6262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3695" g_stop="3868" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3869" i_stop="3980" i_length="112">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3981" g_stop="4139" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="333" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4140" i_stop="4222" i_length="83">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4223" g_stop="4480" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="591" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4481" i_stop="4977" i_length="497">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4978" g_stop="5962" g_length="985"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="1576" r_length="985" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="+" ref_id="SGN-U575359" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3695" e_stop="3868"/>
          <exon e_start="3981" e_stop="4139"/>
          <exon e_start="4223" e_stop="4480"/>
          <exon e_start="4978" e_stop="5962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAATATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTTCAGGAGGTAGAAATTGTAATTAAGATTTCGCACCATGCATCATTTGATTAAATGTATATTTTTCCTTTTTCTCCTGTATTTCTTAAAAGAATGCTAACGTTGACCGATCAAATTCCAGATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATGGTTAGAAACTGGAATGCAGTTATCATACATCTTACTTAAGAAAGTGTAAAAGTTGCCTATTCAGAAAATTGTTCTTTCTGTAGATGTTGAAAGGAGTTGAAAAGGATGATCACAAGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAGGTCTGATTAAATTGCGCACTTATATCTCATCTTTATATTTTATCAGCATGATTTGATCCGTTTTACTCCCTCATGTCTAGGAAGGAGGTTGCTGATAGAAAATGATTGAATTCAAACTGCATGAAATATTTAGCACATAGATTAATGACATACAGGGCCAGCTGAAAATGATTTAAAGAGAGGAAACAAAGTATTGATGTAGATTACAAACTTGAATTATATTAGTAAATTGTTTGCAGGATACACACCACCTTGATATAAACTGACATTATATGACAGTTAATAAAACTACTCTAGAAAATATCACTACAATTAAATCCCCTCAGCCGCAGCTGGCTAAGGAAAAGTCTACTGGAGACTACCAATGTTCGTAGGTGTCAAAGATGGAAAAAACAAAGATAAAAAGATAGAAGCAAAAAACATTATTCCAATCTTTTCTTACTCCCCCTGCCTCCCCTGTTTACTCACGCATCTGACGGCGAAATATGAATTCATAGGAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTAT</genome_strand>
        <mrna_strand>GAGATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAGTATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTGCAGGAG................................................................................................................ATCATTAACAAATCACAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAAAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATG...................................................................................ATGTTGAAAGGAGTTGAAAAGGATGATCACAACCAACATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600106" ref_strand="+" ref_description="SGN-U600106 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345435|emb|CAO14733.1| (e_value=2e-80) unnamed; (*ATH) AT5G14580.1 (e_value=3e-77)  Symbol: None | polyribonucleotide nucleotidyltransferase, putative, similar to Swiss-Prot:P05055 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Escherichia coli) | chr5:4697243-4703069 REVERSE | Alias... ; (*SWP) sp|A4IME3|PNP_GEOTN (e_value=1e-38) Polyribonucleotide nucleotidyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pnp; ">
      <seq>tgaaatcaaggattatcgtttattgactgatattctgggtctggaggatcatctgggtgacatggattttaagattgctggtacccgtaatggtgtaacggccatacaattagatattaaacctgctggaattcctttggatatcatatgtgagagtctagatcctgcacttaaagggaggcttcaaatcctcgagcacatggagcgtgagataagtgctccacgtattcaggataacatatattctcctcggctagttacgtcaaaatacagcaatgatgcacttcgtcgcttgattggtcctgttggtgctttgaagaggaaaattgaagatgaaacaggtgcacggatctcggttagtgatggaacacttactataattgccaaaaatcagtcggtgatggagaaagtacaggagaaggttgattttataattggacgtgaaattgagattggaggagtatataaaggtattgttgtatctgttaaagaatatggcgcctttgtggagtttaatggtggacaacagggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="16924" stop="13962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16624" g_stop="16588" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16587" i_stop="15716" i_length="872">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15715" g_stop="15496" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="257" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15495" i_stop="15404" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15403" g_stop="15320" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="341" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15319" i_stop="14779" i_length="541">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14778" g_stop="14699" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="421" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14374" g_stop="14262" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="534" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-U600106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16624" e_stop="16588"/>
          <exon e_start="15715" e_stop="15496"/>
          <exon e_start="15403" e_stop="15320"/>
          <exon e_start="14778" e_stop="14699"/>
          <exon e_start="14374" e_stop="14262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTGGTGAGGACTGTTGTTTCAATCTTTTTGAATGTTTGTCTTAGCTCTGTGAAGTTCAGTGAAGGGGACAAAAAAGAGGGAAAGAAGCATCTTCTAATGAATTCTCAAGGGATGAAAAAACAAACAAATTAGTTTCGGTAAATATCGTGTAGGCTTGGTGGTAAAATTTACCTTGTTCAGTATTCCAAATGGATATTAGGATTTGGATCTTTTTTTCAAGACAATAATTGGAAGCTCATAAACTATTGCTCTATACCGGCAGCTGGAGTAGGTTCAATTTATTTGGTCACCTTGAAAGTGTGCTTTAAAGTTGTGAAATCATCCGATCACTAAAGGCCTAGGCTTTAAGAGGTGTATCTTCTATTTAGCCAACACTTGCTTGCATAATTATGATTGTAATATGAAATTCTTGACTTCTCATATGACCTTTTATCTCCTCTTGGATTTCACCAAATATATGAAAACCTGCTATTTCTTGCTTTGGTATAAACTTAGATTCAACTGTTGTGTGTCTCCATTTGGTTCATGTTCTAGCTTGGTCTTGTGTTTTTGCATCCGTTTGACTTGAGAAGCCCCCAGTCTGAACCTTGTCTTTCTGCCTTACTTGCATTGGCATGAATAGATTTTACTTCACACCGGAAGTCCAGAACTATATGCTCATAAAACTTATGTCATTGAAAACTGCAAATCATGTAAACAAGAGTTATCAACTTCAAAACTTTACTTACCATCACCAATTGTATAGTCTATATTACTGCTCTTCCTCTGGCTTATTGGTTTAAGTTATATCCTAAGTTTCTTTTGTCTGAAGCTGGTCTCTATCTTTCTCTAAATTTGGTGCGAGTTTTACTTACCTGATTAAGTAACTCCTCTAGGGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAGGTAATTAGCTTCAGTCATTGATCTTATGTTTCTCTAACTCCTTAGTTTCACTTCATTTAACATGTCTCTTTTGATGAATGCTTCAAATACAGTTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAGGTGCAGTCAACAGTTTGCATTAGACTTCTCTGTTACTTTTACCTGGTTACTTTGGGTGATCTTTGACATGAAGGCGTGGTTAATAATATTCTTTTTCATTCCTCTCTTGTGTATGATCATTGATGTAACTCTAATGCCAACTGTTCTTGACTTTCTAAGTAGAATTTTCTTCCCTTCAAACTTGTTGCAGGAATACTTGGTAATATGCTAATTGTAAACCAGTTTTTTCTTTTGCTTCATATTGCTTATACACATTATCGCTTTGCCTTGTTAAGTTTTGTAAAGATATGAAACTTGTGCCCAACTTAGCCTCAAAAGCTGACTCATGAGGGAAGGACTCTAACCTCCCTAACAAATGGATACACACAGAGACACACACATAGAGACAGATAATGTGTATCTTACAGCACTGTATTTTCATATGTAAACACTTTCTAATGGTGTTCTTTCCAGGCCGTAGTTTTCATTTTTAATTTCTCCAGCTGATTCCTTTGTTACTCCTAAGATTGCGTTCATTTCTCCTTGCTGATTCATAATGTAGGTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAGGTAATTTTGTGTTTCCCTTCTGTTTACTTGCTGTAGGTTAGATGAGAACTGCTTTTGTCACTGTATTCCATTTGGAGAAAAACTGCCTATTATTTTAGCATGTAACATTTTTCCTAAAGATTGAGCACAATCATGTAACTGAAGTAAGGAGAACAGCTAAGACAGAATGGTGAATTAGGTATTTAAAAAAAAAAAGGTTTGTCTTGAAAGTTCCTCAAGTGCTACAGATGTTTCTATACCTTGTTTTTCACTTTACTTTGGCTTCAGTGTTCTTGAAAGCTTCTGAGCCAATCAATTCCATCCTTTGCAATTTACTGCTGACAGGTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</genome_strand>
        <mrna_strand>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG............................................................................................TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG....................................................................................................................................................................................................................................................................................................................................GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603640" ref_strand="+" ref_description="SGN-U603640 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157345435|emb|CAO14733.1| (e_value=4e-117) unnamed; (*ATH) AT5G14580.1 (e_value=9e-112)  Symbol: None | polyribonucleotide nucleotidyltransferase, putative, similar to Swiss-Prot:P05055 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide phosphorylase) (PNPase) (Escherichia coli) | chr5:4697243-4703069 REVERSE | Alias... ; (*SWP) sp|Q39VA1|PNP_GEOMG (e_value=8e-47) Polyribonucleotide nucleotidyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pnp; ">
      <seq>gccacgaggtgcaggtaatggcaagtgtgctttcatctgacgggaaacaagatccagatatattggcagctaatgcatcatctgctgctctaatgttgtcagatattccttggggtgggccaattggagtaatacgtattggaaggatttcaggtcaatttgttgtaaatccaagcatggaggagcttagcatcagtgatcttaacttggtatatgcatgtacgagggataaaactttgatgatagatgtccaagctcgtgaaatatctgaaaaggatttggaagctgctttgagacttgctcatccagaggctgttaagtatcttgaccctcaaattagactcgcagctaaagctgaccctacttatggaaagttcgagcgtggagaagctttggaaaaaatcacacaggacgttaaaagagctcttgaggaagaaggtgatgaggaaggcctaaaaattctaccaaagacagttgatacagtaaggaaacaggttgttcgcagaaggatcatttctgaagggcttagagtggacggaaggtgtcttgatgaagttaggcctttgtactgtgaagctggtaatttacctgtattacatggatctgcaattttttcaagaggggatactcaggtcctttgcactgttacccttggagcacctggggatgctcaacgtctggattccctggtcggtccttcaagcaagcgtttcatgctgcattatagctttccaccgttttgtacaaatgaagttggcaaacgaactggcctgaataggcgtgaagttggtcatggcactcttgctgaaaaggctctgcttgctgtattacccccggaagatgattttccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0142D08-GYsrZ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0142D08.1" temp_strand="-" temp_description="C02HBa0142D08.1  AC215394.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0142D08 sequenced_by:kribb upload_account_name:korea">
        <position start="20040" stop="16694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19741" g_stop="19728" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19727" i_stop="19641" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19640" g_stop="19470" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="185" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19469" i_stop="19037" i_length="433">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19036" g_stop="18911" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="311" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18910" i_stop="18831" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18830" g_stop="18785" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="357" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18784" i_stop="18686" i_length="99">
            <donor d_prob="0.477" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18685" g_stop="18669" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="374" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18668" i_stop="18534" i_length="135">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18533" g_stop="18414" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="494" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18413" i_stop="18012" i_length="402">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18011" g_stop="17874" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="632" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17873" i_stop="17758" i_length="116">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17757" g_stop="17595" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="795" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17594" i_stop="17052" i_length="543">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17051" g_stop="16994" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="853" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0142D08.1" gen_strand="-" ref_id="SGN-U603640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0142D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19741" e_stop="19728"/>
          <exon e_start="19640" e_stop="19470"/>
          <exon e_start="19036" e_stop="18911"/>
          <exon e_start="18830" e_stop="18785"/>
          <exon e_start="18685" e_stop="18669"/>
          <exon e_start="18533" e_stop="18414"/>
          <exon e_start="18011" e_stop="17874"/>
          <exon e_start="17757" e_stop="17595"/>
          <exon e_start="17051" e_stop="16994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACGAGGTGCAGGTAAGCTGGTGTCTTTTTATTGCAATTAACTTGATAGTAGTAGTTTGTTTGGCGGCTATAAGCTTCGCTGACTCACATTCTCCCCAGGTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAGGTAATATCTTATATCAGTTGGCATCCTCAGGATAAATTTAGAACGTTAATGCTTTCCAATTTCAGCAAGTTGACTTTCATTCTGGTGGCAGTTACGACCCTGGCATCTTGAGAACTTAGGCCATATCCTTGGGTGCTGTACTTGTTTACACTCTTAACAGAAGATGGTTGAATTAAGTGTAAGAAATGGAGCTTTGGGGCTCATGCAGAAGTTGTAGTTTCTTGATTATATAGCCACTGCTGGGTGTCAATAGTGGATAACTAGCTTAATTTCCAAGAATTTGCATACTAGGCAAACTATTTCTCTTCCATAATATTAGGAAGAACTACATAGTAAGAATATAACAAATGTTGTTGTCACTGATGCCAATTATGTCCACCAGTAATTGCAGTCCTGTCCCTTGATTGAAGTCTTCTTATTGGATGTCATGCAGCTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAGGTGAGACATTGCTGGCTATCAATTTGTCACTGCTTCTCCATAACTCCAAACCAATAATTTTGATTTTTTTGAATATTCAGGCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTGGTAAGCAGAAGAAAGAGTATAAGCTGTCTATGGTATCAGAAAAAACATTTGAAAAGATTCAGAATCTGGCCAAAGAACCTATAGAAGCTGTTTTTACAGACCCTACTTATGGAAAGGTATCTATTTTCTTACTGGAAGATGAATTTAGGAACTTCACTGTTTTTCACTATTCATGTTATATAGTCTATTGATAAAGGCTGCAGGTACCTTCTTTTCACCTCATTAATACTATGTTTTCCATTCTTATTCAGTTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAGGTAAGCTTGTAGATGCTGAAGTTTATCTTTTGTGCTTCTGATTTTGAGGTTTTATGTTTACATCATTAATAAACAGAAAATTTTTGTTTCTTCTTTTCCTTTTGTTGATTGCAGAGGATCACATGATCAATGATTGACCTTCTAGGTTATTTCCTCATGCATTTTATCTTTGGCAAACTAATGTGTATTTCCCTCATGATTGGTCAATAGTAGGTTGCATGTGTTTTTTGGCTATATAAGTCCATTAGCAAACATTGACATATTCTAAATAAAGACTTCAATACTTCAGTTACTGCATTTTAAGGACTATTTGTTTGGGCTTCTTTTTACATCCTAAACTAAGGTTTTAGTCTTTTAATTCATTTTGTGATATTAACCTCCTCAAGTTTCTGACAACATCAGGTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAGGTCAGTATATTCATTTTTCACTAAGAATACATGATGTACTATGATTAAGGGTTATCATCACTTGCAAATATGCAATCTTGTTGTCATTCATTATCCCTTATGAGATGTTTATACAGGTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATGGTAAGCCGTTCAGTTCTCAGGTTTATAATATGGTCTGCTCCTGAAGTTAGTGAAAGCTGTAAATGGACCTTAATACTAGATTGTCAATTTGCAGTTGTAACTTGTAATCAACCTCAGTATGTGGAAACATTTATGCCATTTTGTACCAACAACGAGGGAAGAGAAATGTTGATAATGTACTCTCTTCCCTTTCCCATTAACCTTATTTTTCTTGTTTTATTGTTGTTTCCTTGTTTCATGTAAAAACCAAATACTGGCTAAAGGAAAAAAAGAGAAGATCTTATGTCTCTCTCATGCAATATCGTAAAGTAGGGGTTGGGTTTCCTGCATTGTTCTTTATGTTTGATTAATAAATATTTATATCGTCTGGTATAACTGGTTCTAGTTTTTGAGTCTCTGTCCACTTGGATCATCTTTTGGGTTTCTTGGTCTTTCTGTTCATTTGCTACGTAATTTATGTTCGTGGTATCTTTTTCTAATTACGGCATCTCCAGGGTAATTTGTGGATCATTTTCTTGATACTAGATGCTTAATCTTCTACAGGCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</genome_strand>
        <mrna_strand>GCCACGAGGTGCAG.......................................................................................GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG................................................................................GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG...................................................................................................ACCCTACTTATGGAAAG.......................................................................................................................................TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG....................................................................................................................GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2112" PGL_stop="1819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2112" e_stop="1819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2112" e_stop="1819" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2112" stop="1819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGTTGGTTCTTCAAATTTCTCAACTGCTGATTCCTCAGGTTTCTCCTCAACTGATGGTTCTTCATGTTTTTCATCAACTGCTGGTTCTTGAACTGTAGCTTCTTCAGGTTTCACCTCAACTGTTGGTTCCTCAAGTTTTTGGTCAACTACTTGTTCTTCAGTTGCTAGTTCTTCAGGTTTCTTTTCAACTGCTAGCTCTTCATGTGTCTCTTTAACCACTGGTTCTTCAGGTGTTTCTTTCACCTCTGGTTCTTGAGATTGCTCCTCAATCACTGATTCTTGGGGTTTCTC</gDNA_template>
            <first_frame> N  C  W  F  F  K  F  L  N  C  *  F  L  R  F  L  L  N  *  W  F  F  M  F  F  I  N  C  W  F  L  N  C  S  F  F  R  F  H  L  N  C  W  F  L  K  F  L  V  N  Y  L  F  F  S  C  *  F  F  R  F  L  F  N  C  *  L  F  M  C  L  F  N  H  W  F  F  R  C  F  F  H  L  W  F  L  R  L  L  L  N  H  *  F  L  G  F  L </first_frame>
            <second_frame>  I  V  G  S  S  N  F  S  T  A  D  S  S  G  F  S  S  T  D  G  S  S  C  F  S  S  T  A  G  S  *  T  V  A  S  S  G  F  T  S  T  V  G  S  S  S  F  W  S  T  T  C  S  S  V  A  S  S  S  G  F  F  S  T  A  S  S  S  C  V  S  L  T  T  G  S  S  G  V  S  F  T  S  G  S  *  D  C  S  S  I  T  D  S  W  G  F   </second_frame>
            <third_frame>   L  L  V  L  Q  I  S  Q  L  L  I  P  Q  V  S  P  Q  L  M  V  L  H  V  F  H  Q  L  L  V  L  E  L  *  L  L  Q  V  S  P  Q  L  L  V  P  Q  V  F  G  Q  L  L  V  L  Q  L  L  V  L  Q  V  S  F  Q  L  L  A  L  H  V  S  L  *  P  L  V  L  Q  V  F  L  S  P  L  V  L  E  I  A  P  Q  S  L  I  L  G  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0142D08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="3695" PGL_stop="5962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3695" e_stop="3868"/>
            <exon e_start="3981" e_stop="4139"/>
            <exon e_start="4223" e_stop="4480"/>
            <exon e_start="4978" e_stop="5962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.952" e_score="0.989"/>
          <exon-intron don_prob="0.760" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="3695" e_stop="3868" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.952">
            <gDNA_intron_boundary i_start="3869" i_stop="3980" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="3981" e_stop="4139" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.760" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4140" i_stop="4222" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="4223" e_stop="4480" e_length="258"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4481" i_stop="4977" i_length="497"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4978" e_stop="5962" e_length="985"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3695" stop="3868"/>
              <exon start="3981" stop="4139"/>
              <exon start="4223" stop="4480"/>
              <exon start="4978" stop="5962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATTTCTGAAGAAAACAAAGCAGCAGTAGTTACAGGCACCAATATGTTACAAAGCTGTGCAGGCCCACAGGAACAACTGAAGCATCAGTTAGCTGAGCTAGGCGAAGAGAAACAGGCAGGAGGAATAGCAGACACCAATACTGAGAAGCCTTACATTGCACCTGTTCAGGAG : ATCATTAACAAATCAGAAACAGAGGATATTTCCAGTGCGGATTGCCTTGAAGAAGAAAATAGCCTCAGAACCAACCAAGAGAAGTTAAAAGAGGGAGAAAATTCAGAAGTGAAGACAGATGAAAATATTGACAGGGGAGATGAATTCCAAAGCATAATG : ATGTTGAAAGGAGTTGAAAAGGATGATCACAAGCAGCATATAAAACACAACACATGTGCAGTCATGGATACAGAAGAGCAGAATGAAGATTCACCTGCTGGAGAACAAACATCCAAAAAGCTAGAAGGACTGGAGAAAGTTGATATTGATGACAATAACAATATTAATCATCAACGTACTGAGACAAACCTCTCAGAAGAGGCCACAGAATCAAAGAGTGAATGTGTTGCGATGGAAATCAAGACTCCAATCAAAGAG : GAGGAACAAGAAGAAGATTTAAGAGAGACCACCGGTGAAGATTCCTCAAACAACACAACACAGGTGCAAAAAGAGGAGGAAACAACAATGAGTGAACCCGAAAGAAAAAGTTTGGAACCTTTTGGATCAGAACGAAAAACAGCAGCAGGTTTCGGAGAGATGATAACATGCAATGAGACAAAGGTAACAGAACATTTCACATCATTGAAATCTGTTACGGTTTCGGAGAAGGAGATGGATGACATGGTGAGCAATGAGAGCAATACAACTAAGCAGATACAAGAGCAAGCAGCATATCCTCTACTTACATTGGAGAGGGAGGAAACTATTCCAACAAGCAGCACTGATGCCAATGGTACTCCCAAAGACAGCATTACCCCACATGTGGAACTGGGTGCAGAGGCCAAAAATATCCAGTACATGCAGGAAAAATGCAAAATTTCTGAAACAGAACAACATCAGGAAAATTATGAAAACAAGAAAGAAGTTGAATGTGATTCAAAAGAAGTACCAGAGGAATCCATATCGAGAGAGACACAAGCTAAGGCCACACTATCTGATCTTGTGCATGTATCAACAAAAGAGGCATCAAAAATTGAGGAAGACTTTGCTGAAGAAAGAGAAGGCAGCGACAGAGAAGAGGAGGGAATTCAAAAAACAAGAGATGAGTCAAGTTCTGAAGATCCAGTGATCGTAGAAATCTCCAAAGATGCTGATATCAAAGTTCCTCCCAAGAAACATCAGAACATATTGTCAGGAGTTGGATCAAAAGTCAAGCACTCAATTGCAAAGGTGAAGAAAGCCATCACTGGTAAGTCCTCTCAGACCAAGCCATCATCACCAAAGTAAGGCGGAGAAAAAAGATAAAGAATTCACATTATACAAAGTTGTAAGTACTCAAGAAAAACAAAGTGAAAAGCTTTTCAGCTACTCTAGTTTTTAATGAAGTAGAAAAGTTTGTTCAGAATGTGTGATCTTATTGTAT</gDNA_template>
            <first_frame> E  I  S  E  E  N  K  A  A  V  V  T  G  T  N  M  L  Q  S  C  A  G  P  Q  E  Q  L  K  H  Q  L  A  E  L  G  E  E  K  Q  A  G  G  I  A  D  T  N  T  E  K  P  Y  I  A  P  V  Q  E  :  I  I  N  K  S  E  T  E  D  I  S  S  A  D  C  L  E  E  E  N  S  L  R  T  N  Q  E  K  L  K  E  G  E  N  S  E  V  K  T  D  E  N  I  D  R  G  D  E  F  Q  S  I  M  :  M  L  K  G  V  E  K  D  D  H  K  Q  H  I  K  H  N  T  C  A  V  M  D  T  E  E  Q  N  E  D  S  P  A  G  E  Q  T  S  K  K  L  E  G  L  E  K  V  D  I  D  D  N  N  N  I  N  H  Q  R  T  E  T  N  L  S  E  E  A  T  E  S  K  S  E  C  V  A  M  E  I  K  T  P  I  K  E  :  E  E  Q  E  E  D  L  R  E  T  T  G  E  D  S  S  N  N  T  T  Q  V  Q  K  E  E  E  T  T  M  S  E  P  E  R  K  S  L  E  P  F  G  S  E  R  K  T  A  A  G  F  G  E  M  I  T  C  N  E  T  K  V  T  E  H  F  T  S  L  K  S  V  T  V  S  E  K  E  M  D  D  M  V  S  N  E  S  N  T  T  K  Q  I  Q  E  Q  A  A  Y  P  L  L  T  L  E  R  E  E  T  I  P  T  S  S  T  D  A  N  G  T  P  K  D  S  I  T  P  H  V  E  L  G  A  E  A  K  N  I  Q  Y  M  Q  E  K  C  K  I  S  E  T  E  Q  H  Q  E  N  Y  E  N  K  K  E  V  E  C  D  S  K  E  V  P  E  E  S  I  S  R  E  T  Q  A  K  A  T  L  S  D  L  V  H  V  S  T  K  E  A  S  K  I  E  E  D  F  A  E  E  R  E  G  S  D  R  E  E  E  G  I  Q  K  T  R  D  E  S  S  S  E  D  P  V  I  V  E  I  S  K  D  A  D  I  K  V  P  P  K  K  H  Q  N  I  L  S  G  V  G  S  K  V  K  H  S  I  A  K  V  K  K  A  I  T  G  K  S  S  Q  T  K  P  S  S  P  K  *  G  G  E  K  R  *  R  I  H  I  I  Q  S  C  K  Y  S  R  K  T  K  *  K  A  F  Q  L  L  *  F  L  M  K  *  K  S  L  F  R  M  C  D  L  I  V  </first_frame>
            <second_frame>  R  F  L  K  K  T  K  Q  Q  *  L  Q  A  P  I  C  Y  K  A  V  Q  A  H  R  N  N  *  S  I  S  *  L  S  *  A  K  R  N  R  Q  E  E  *  Q  T  P  I  L  R  S  L  T  L  H  L  F  R  R :   S  L  T  N  Q  K  Q  R  I  F  P  V  R  I  A  L  K  K  K  I  A  S  E  P  T  K  R  S  *  K  R  E  K  I  Q  K  *  R  Q  M  K  I  L  T  G  E  M  N  S  K  A  *  * :   C  *  K  E  L  K  R  M  I  T  S  S  I  *  N  T  T  H  V  Q  S  W  I  Q  K  S  R  M  K  I  H  L  L  E  N  K  H  P  K  S  *  K  D  W  R  K  L  I  L  M  T  I  T  I  L  I  I  N  V  L  R  Q  T  S  Q  K  R  P  Q  N  Q  R  V  N  V  L  R  W  K  S  R  L  Q  S  K  R :   R  N  K  K  K  I  *  E  R  P  P  V  K  I  P  Q  T  T  Q  H  R  C  K  K  R  R  K  Q  Q  *  V  N  P  K  E  K  V  W  N  L  L  D  Q  N  E  K  Q  Q  Q  V  S  E  R  *  *  H  A  M  R  Q  R  *  Q  N  I  S  H  H  *  N  L  L  R  F  R  R  R  R  W  M  T  W  *  A  M  R  A  I  Q  L  S  R  Y  K  S  K  Q  H  I  L  Y  L  H  W  R  G  R  K  L  F  Q  Q  A  A  L  M  P  M  V  L  P  K  T  A  L  P  H  M  W  N  W  V  Q  R  P  K  I  S  S  T  C  R  K  N  A  K  F  L  K  Q  N  N  I  R  K  I  M  K  T  R  K  K  L  N  V  I  Q  K  K  Y  Q  R  N  P  Y  R  E  R  H  K  L  R  P  H  Y  L  I  L  C  M  Y  Q  Q  K  R  H  Q  K  L  R  K  T  L  L  K  K  E  K  A  A  T  E  K  R  R  E  F  K  K  Q  E  M  S  Q  V  L  K  I  Q  *  S  *  K  S  P  K  M  L  I  S  K  F  L  P  R  N  I  R  T  Y  C  Q  E  L  D  Q  K  S  S  T  Q  L  Q  R  *  R  K  P  S  L  V  S  P  L  R  P  S  H  H  H  Q  S  K  A  E  K  K  D  K  E  F  T  L  Y  K  V  V  S  T  Q  E  K  Q  S  E  K  L  F  S  Y  S  S  F  *  *  S  R  K  V  C  S  E  C  V  I  L  L  Y </second_frame>
            <third_frame>   D  F  *  R  K  Q  S  S  S  S  Y  R  H  Q  Y  V  T  K  L  C  R  P  T  G  T  T  E  A  S  V  S  *  A  R  R  R  E  T  G  R  R  N  S  R  H  Q  Y  *  E  A  L  H  C  T  C  S  G   : D  H  *  Q  I  R  N  R  G  Y  F  Q  C  G  L  P  *  R  R  K  *  P  Q  N  Q  P  R  E  V  K  R  G  R  K  F  R  S  E  D  R  *  K  Y  *  Q  G  R  *  I  P  K  H  N   : D  V  E  R  S  *  K  G  *  S  Q  A  A  Y  K  T  Q  H  M  C  S  H  G  Y  R  R  A  E  *  R  F  T  C  W  R  T  N  I  Q  K  A  R  R  T  G  E  S  *  Y  *  *  Q  *  Q  Y  *  S  S  T  Y  *  D  K  P  L  R  R  G  H  R  I  K  E  *  M  C  C  D  G  N  Q  D  S  N  Q  R   : G  G  T  R  R  R  F  K  R  D  H  R  *  R  F  L  K  Q  H  N  T  G  A  K  R  G  G  N  N  N  E  *  T  R  K  K  K  F  G  T  F  W  I  R  T  K  N  S  S  R  F  R  R  D  D  N  M  Q  *  D  K  G  N  R  T  F  H  I  I  E  I  C  Y  G  F  G  E  G  D  G  *  H  G  E  Q  *  E  Q  Y  N  *  A  D  T  R  A  S  S  I  S  S  T  Y  I  G  E  G  G  N  Y  S  N  K  Q  H  *  C  Q  W  Y  S  Q  R  Q  H  Y  P  T  C  G  T  G  C  R  G  Q  K  Y  P  V  H  A  G  K  M  Q  N  F  *  N  R  T  T  S  G  K  L  *  K  Q  E  R  S  *  M  *  F  K  R  S  T  R  G  I  H  I  E  R  D  T  S  *  G  H  T  I  *  S  C  A  C  I  N  K  R  G  I  K  N  *  G  R  L  C  *  R  K  R  R  Q  R  Q  R  R  G  G  N  S  K  N  K  R  *  V  K  F  *  R  S  S  D  R  R  N  L  Q  R  C  *  Y  Q  S  S  S  Q  E  T  S  E  H  I  V  R  S  W  I  K  S  Q  A  L  N  C  K  G  E  E  S  H  H  W  *  V  L  S  D  Q  A  I  I  T  K  V  R  R  R  K  K  I  K  N  S  H  Y  T  K  L  *  V  L  K  K  N  K  V  K  S  F  S  A  T  L  V  F  N  E  V  E  K  F  V  Q  N  V  *  S  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3695" stop="3868"/>
                    <exon start="3981" stop="4139"/>
                    <exon start="4223" stop="4480"/>
                    <exon start="4978" stop="5826"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EISEENKAAVVTGTNMLQSCAGPQEQLKHQLAELGEEKQAGGIADTNTEKPYIAPVQEIINKSETEDISSADCLEEENSLRTNQEKLKEGENSEVKTDENIDRGDEFQSIMMLKGVEKDDHKQHIKHNTCAVMDTEEQNEDSPAGEQTSKKLEGLEKVDIDDNNNINHQRTETNLSEEATESKSECVAMEIKTPIKEEEQEEDLRETTGEDSSNNTTQVQKEEETTMSEPERKSLEPFGSERKTAAGFGEMITCNETKVTEHFTSLKSVTVSEKEMDDMVSNESNTTKQIQEQAAYPLLTLEREETIPTSSTDANGTPKDSITPHVELGAEAKNIQYMQEKCKISETEQHQENYENKKEVECDSKEVPEESISRETQAKATLSDLVHVSTKEASKIEEDFAEEREGSDREEEGIQKTRDESSSEDPVIVEISKDADIKVPPKKHQNILSGVGSKVKHSIAKVKKAITGKSSQTKPSSPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16624" PGL_stop="14262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16624" e_stop="16588"/>
            <exon e_start="15715" e_stop="15496"/>
            <exon e_start="15403" e_stop="15320"/>
            <exon e_start="14778" e_stop="14699"/>
            <exon e_start="14374" e_stop="14262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.904" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16624" e_stop="16588" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.904" acc_prob="0.986">
            <gDNA_intron_boundary i_start="16587" i_stop="15716" i_length="872"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15715" e_stop="15496" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="15495" i_stop="15404" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15403" e_stop="15320" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.473" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15319" i_stop="14779" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14778" e_stop="14699" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.983">
            <gDNA_intron_boundary i_start="14698" i_stop="14375" i_length="324"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14374" e_stop="14262" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16624" stop="16588"/>
              <exon start="15715" stop="15496"/>
              <exon start="15403" stop="15320"/>
              <exon start="14778" stop="14699"/>
              <exon start="14374" stop="14262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATCAAGGATTATCGTTTATTGACTGATATTCTG : GGTCTGGAGGATCATCTGGGTGACATGGATTTTAAGATTGCTGGTACCCGTAATGGTGTAACGGCCATACAATTAGATATTAAACCTGCTGGAATTCCTTTGGATATCATATGTGAGAGTCTAGATCCTGCACTTAAAGGGAGGCTTCAAATCCTCGAGCACATGGAGCGTGAGATAAGTGCTCCACGTATTCAGGATAACATATATTCTCCTCGGCTAG : TTACGTCAAAATACAGCAATGATGCACTTCGTCGCTTGATTGGTCCTGTTGGTGCTTTGAAGAGGAAAATTGAAGATGAAACAG : GTGCACGGATCTCGGTTAGTGATGGAACACTTACTATAATTGCCAAAAATCAGTCGGTGATGGAGAAAGTACAGGAGAAG : GTTGATTTTATAATTGGACGTGAAATTGAGATTGGAGGAGTATATAAAGGTATTGTTGTATCTGTTAAAGAATATGGCGCCTTTGTGGAGTTTAATGGTGGACAACAGGGCCT</gDNA_template>
            <first_frame> *  N  Q  G  L  S  F  I  D  *  Y  S   : G  S  G  G  S  S  G  *  H  G  F  *  D  C  W  Y  P  *  W  C  N  G  H  T  I  R  Y  *  T  C  W  N  S  F  G  Y  H  M  *  E  S  R  S  C  T  *  R  E  A  S  N  P  R  A  H  G  A  *  D  K  C  S  T  Y  S  G  *  H  I  F  S  S  A  S :   Y  V  K  I  Q  Q  *  C  T  S  S  L  D  W  S  C  W  C  F  E  E  E  N  *  R  *  N  R :   C  T  D  L  G  *  *  W  N  T  Y  Y  N  C  Q  K  S  V  G  D  G  E  S  T  G  E   : G  *  F  Y  N  W  T  *  N  *  D  W  R  S  I  *  R  Y  C  C  I  C  *  R  I  W  R  L  C  G  V  *  W  W  T  T  G  P </first_frame>
            <second_frame>  E  I  K  D  Y  R  L  L  T  D  I  L  :  G  L  E  D  H  L  G  D  M  D  F  K  I  A  G  T  R  N  G  V  T  A  I  Q  L  D  I  K  P  A  G  I  P  L  D  I  I  C  E  S  L  D  P  A  L  K  G  R  L  Q  I  L  E  H  M  E  R  E  I  S  A  P  R  I  Q  D  N  I  Y  S  P  R  L   : V  T  S  K  Y  S  N  D  A  L  R  R  L  I  G  P  V  G  A  L  K  R  K  I  E  D  E  T   : G  A  R  I  S  V  S  D  G  T  L  T  I  I  A  K  N  Q  S  V  M  E  K  V  Q  E  K  :  V  D  F  I  I  G  R  E  I  E  I  G  G  V  Y  K  G  I  V  V  S  V  K  E  Y  G  A  F  V  E  F  N  G  G  Q  Q  G   </second_frame>
            <third_frame>   K  S  R  I  I  V  Y  *  L  I  F  W :   V  W  R  I  I  W  V  T  W  I  L  R  L  L  V  P  V  M  V  *  R  P  Y  N  *  I  L  N  L  L  E  F  L  W  I  S  Y  V  R  V  *  I  L  H  L  K  G  G  F  K  S  S  S  T  W  S  V  R  *  V  L  H  V  F  R  I  T  Y  I  L  L  G  *  :  L  R  Q  N  T  A  M  M  H  F  V  A  *  L  V  L  L  V  L  *  R  G  K  L  K  M  K  Q  :  V  H  G  S  R  L  V  M  E  H  L  L  *  L  P  K  I  S  R  *  W  R  K  Y  R  R  R :   L  I  L  *  L  D  V  K  L  R  L  E  E  Y  I  K  V  L  L  Y  L  L  K  N  M  A  P  L  W  S  L  M  V  D  N  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16623" stop="16588"/>
                    <exon start="15715" stop="15496"/>
                    <exon start="15403" stop="15320"/>
                    <exon start="14778" stop="14699"/>
                    <exon start="14374" stop="14264"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKDYRLLTDILGLEDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIICESLDPALKGRLQILEHMEREISAPRIQDNIYSPRLVTSKYSNDALRRLIGPVGALKRKIEDETGARISVSDGTLTIIAKNQSVMEKVQEKVDFIIGREIEIGGVYKGIVVSVKEYGAFVEFNGGQQG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19741" PGL_stop="16994"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19741" e_stop="19728"/>
            <exon e_start="19640" e_stop="19470"/>
            <exon e_start="19036" e_stop="18911"/>
            <exon e_start="18830" e_stop="18785"/>
            <exon e_start="18685" e_stop="18669"/>
            <exon e_start="18533" e_stop="18414"/>
            <exon e_start="18011" e_stop="17874"/>
            <exon e_start="17757" e_stop="17595"/>
            <exon e_start="17051" e_stop="16994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.929"/>
          <exon-intron don_prob="0.963" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.477" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="19741" e_stop="19728" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19727" i_stop="19641" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19640" e_stop="19470" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.898">
            <gDNA_intron_boundary i_start="19469" i_stop="19037" i_length="433"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19036" e_stop="18911" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18910" i_stop="18831" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18830" e_stop="18785" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.477" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18784" i_stop="18686" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18685" e_stop="18669" e_length="17"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="18668" i_stop="18534" i_length="135"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18533" e_stop="18414" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="18413" i_stop="18012" i_length="402"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18011" e_stop="17874" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.987">
            <gDNA_intron_boundary i_start="17873" i_stop="17758" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17757" e_stop="17595" e_length="163"/>
          </exon>
          <intron i_serial="8" don_prob="0.956" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17594" i_stop="17052" i_length="543"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17051" e_stop="16994" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19741" stop="19728"/>
              <exon start="19640" stop="19470"/>
              <exon start="19036" stop="18911"/>
              <exon start="18830" stop="18785"/>
              <exon start="18685" stop="18669"/>
              <exon start="18533" stop="18414"/>
              <exon start="18011" stop="17874"/>
              <exon start="17757" stop="17595"/>
              <exon start="17051" stop="16994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACGAGGTGCAG : GTAATGGCAAGTGTGCTTTCATCTGACGGGAAACAAGATCCAGATATATTGGCAGCTAATGCATCATCTGCTGCTCTAATGTTGTCAGATATTCCTTGGGGTGGGCCAATTGGAGTAATACGTATTGGAAGGATTTCAGGTCAATTTGTTGTAAATCCAAGCATGGAGGAG : CTTAGCATCAGTGATCTTAACTTGGTATATGCATGTACGAGGGATAAAACTTTGATGATAGATGTCCAAGCTCGTGAAATATCTGAAAAGGATTTGGAAGCTGCTTTGAGACTTGCTCATCCAGAG : GCTGTTAAGTATCTTGACCCTCAAATTAGACTCGCAGCTAAAGCTG : ACCCTACTTATGGAAAG : TTCGAGCGTGGAGAAGCTTTGGAAAAAATCACACAGGACGTTAAAAGAGCTCTTGAGGAAGAAGGTGATGAGGAAGGCCTAAAAATTCTACCAAAGACAGTTGATACAGTAAGGAAACAG : GTTGTTCGCAGAAGGATCATTTCTGAAGGGCTTAGAGTGGACGGAAGGTGTCTTGATGAAGTTAGGCCTTTGTACTGTGAAGCTGGTAATTTACCTGTATTACATGGATCTGCAATTTTTTCAAGAGGGGATACTCAG : GTCCTTTGCACTGTTACCCTTGGAGCACCTGGGGATGCTCAACGTCTGGATTCCCTGGTCGGTCCTTCAAGCAAGCGTTTCATGCTGCATTATAGCTTTCCACCGTTTTGTACAAATGAAGTTGGCAAACGAACTGGCCTGAATAGGCGTGAAGTTGGTCATG : GCACTCTTGCTGAAAAGGCTCTGCTTGCTGTATTACCCCCGGAAGATGATTTTCCATA</gDNA_template>
            <first_frame> T  T  R  C  R :   *  W  Q  V  C  F  H  L  T  G  N  K  I  Q  I  Y  W  Q  L  M  H  H  L  L  L  *  C  C  Q  I  F  L  G  V  G  Q  L  E  *  Y  V  L  E  G  F  Q  V  N  L  L  *  I  Q  A  W  R  S :   L  A  S  V  I  L  T  W  Y  M  H  V  R  G  I  K  L  *  *  *  M  S  K  L  V  K  Y  L  K  R  I  W  K  L  L  *  D  L  L  I  Q  R :   L  L  S  I  L  T  L  K  L  D  S  Q  L  K  L  :  T  L  L  M  E  S :   S  S  V  E  K  L  W  K  K  S  H  R  T  L  K  E  L  L  R  K  K  V  M  R  K  A  *  K  F  Y  Q  R  Q  L  I  Q  *  G  N  R :   L  F  A  E  G  S  F  L  K  G  L  E  W  T  E  G  V  L  M  K  L  G  L  C  T  V  K  L  V  I  Y  L  Y  Y  M  D  L  Q  F  F  Q  E  G  I  L  R :   S  F  A  L  L  P  L  E  H  L  G  M  L  N  V  W  I  P  W  S  V  L  Q  A  S  V  S  C  C  I  I  A  F  H  R  F  V  Q  M  K  L  A  N  E  L  A  *  I  G  V  K  L  V  M  :  A  L  L  L  K  R  L  C  L  L  Y  Y  P  R  K  M  I  F  H  </first_frame>
            <second_frame>  P  R  G  A   : G  N  G  K  C  A  F  I  *  R  E  T  R  S  R  Y  I  G  S  *  C  I  I  C  C  S  N  V  V  R  Y  S  L  G  W  A  N  W  S  N  T  Y  W  K  D  F  R  S  I  C  C  K  S  K  H  G  G   : A  *  H  Q  *  S  *  L  G  I  C  M  Y  E  G  *  N  F  D  D  R  C  P  S  S  *  N  I  *  K  G  F  G  S  C  F  E  T  C  S  S  R   : G  C  *  V  S  *  P  S  N  *  T  R  S  *  S  * :   P  Y  L  W  K   : V  R  A  W  R  S  F  G  K  N  H  T  G  R  *  K  S  S  *  G  R  R  *  *  G  R  P  K  N  S  T  K  D  S  *  Y  S  K  E  T   : G  C  S  Q  K  D  H  F  *  R  A  *  S  G  R  K  V  S  *  *  S  *  A  F  V  L  *  S  W  *  F  T  C  I  T  W  I  C  N  F  F  K  R  G  Y  S   : G  P  L  H  C  Y  P  W  S  T  W  G  C  S  T  S  G  F  P  G  R  S  F  K  Q  A  F  H  A  A  L  *  L  S  T  V  L  Y  K  *  S  W  Q  T  N  W  P  E  *  A  *  S  W  S  W :   H  S  C  *  K  G  S  A  C  C  I  T  P  G  R  *  F  S  I </second_frame>
            <third_frame>   H  E  V  Q  :  V  M  A  S  V  L  S  S  D  G  K  Q  D  P  D  I  L  A  A  N  A  S  S  A  A  L  M  L  S  D  I  P  W  G  G  P  I  G  V  I  R  I  G  R  I  S  G  Q  F  V  V  N  P  S  M  E  E  :  L  S  I  S  D  L  N  L  V  Y  A  C  T  R  D  K  T  L  M  I  D  V  Q  A  R  E  I  S  E  K  D  L  E  A  A  L  R  L  A  H  P  E  :  A  V  K  Y  L  D  P  Q  I  R  L  A  A  K  A   : D  P  T  Y  G  K  :  F  E  R  G  E  A  L  E  K  I  T  Q  D  V  K  R  A  L  E  E  E  G  D  E  E  G  L  K  I  L  P  K  T  V  D  T  V  R  K  Q  :  V  V  R  R  R  I  I  S  E  G  L  R  V  D  G  R  C  L  D  E  V  R  P  L  Y  C  E  A  G  N  L  P  V  L  H  G  S  A  I  F  S  R  G  D  T  Q  :  V  L  C  T  V  T  L  G  A  P  G  D  A  Q  R  L  D  S  L  V  G  P  S  S  K  R  F  M  L  H  Y  S  F  P  P  F  C  T  N  E  V  G  K  R  T  G  L  N  R  R  E  V  G  H   : G  T  L  A  E  K  A  L  L  A  V  L  P  P  E  D  D  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0142D08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19739" stop="19728"/>
                    <exon start="19640" stop="19470"/>
                    <exon start="19036" stop="18911"/>
                    <exon start="18830" stop="18785"/>
                    <exon start="18685" stop="18669"/>
                    <exon start="18533" stop="18414"/>
                    <exon start="18011" stop="17874"/>
                    <exon start="17757" stop="17595"/>
                    <exon start="17051" stop="16996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEVQVMASVLSSDGKQDPDILAANASSAALMLSDIPWGGPIGVIRIGRISGQFVVNPSMEELSISDLNLVYACTRDKTLMIDVQAREISEKDLEAALRLAHPEAVKYLDPQIRLAAKADPTYGKFERGEALEKITQDVKRALEEEGDEEGLKILPKTVDTVRKQVVRRRIISEGLRVDGRCLDEVRPLYCEAGNLPVLHGSAIFSRGDTQVLCTVTLGAPGDAQRLDSLVGPSSKRFMLHYSFPPFCTNEVGKRTGLNRREVGHGTLAEKALLAVLPPEDDFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 8880 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2220 bytes was the average size of a spliced alignment
$ 9536 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2384 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 17 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:10:59
-->
