<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:22:44"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590134" ref_strand="+" ref_description="SGN-U590134 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaaccaaaataaaatgtaagcattaatgtttntgtgttgtgtacagtcataccagttctcccaactacaagtaaaaccacaaaataataaataaagaacatctataaaaaagatattagtaagatattaatgaacaaaaccgtcaaacagcctattagttgagtaatgcatgcaatccaaaaaaaggaacatttcccaaatctcacagacccgcctgaagtgccgtgccaagcaacagtttcttagttcgacatgagacatgtttgattgaacatcaatagatgaaaacctccaaatcctcattgtgtattaaacaaagtagagtgagtaataataacaagaaaagaggaagtgcatgtgtaatatcacgaaaagggtggtccggtgagagatgggaaagaaactcatctcaaaacatgaatcagctcaaaagcatagaaacatgtcatggctgcaagcattagttagcttttagagatagaaaaacaccaataaatggtactttcttcatcacatacccacatgagatgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="25595" stop="17746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25295" g_stop="24837" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24836" i_stop="23387" i_length="1450">
            <donor d_prob="0.374" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23386" g_stop="23293" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="536" r_length="86" r_score="0.766"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U590134" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25295" e_stop="24837"/>
          <exon e_start="23386" e_stop="23293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAAATAAAATGTAAGCGTTAATGTTT-TGTGTTGTGTACAGTCATACCAGTTCTCCCAATTACAAGTAAAACCACAAAATAATAAATAAAGAACATCTATAAAAAAAAAAAAATATTAGTGAGATATTAATGAACAAAACCGTCAAACAGCCCATTAGTTGAGTAATGCATGCAATCCCAAAAAAGGAACATTTCCCAAAATCTCATAGACCCGCCTGAAGTGCCGTGCCAAGCAACAGTTTCTTAGTTCGACATGAGATATGTTTGATTGAACATCAATAGATGAAAACCTCCAAATCATCATTGTGTATTAAACAAAGAAGAGTGAGTAATATTAACAAGAAAAGAGGAAGTGCATGTGTAATATCACGAAAAGGGTGGTCCGGTGAGAGATGGGAAAGAAACTCCACTCAAAACATGAATCAGCTCAAAAGCTTAGAAAAGCGTGACAGATGTTAGCTTCCACTGGATCAGATTTAAGTTCCTGCTTTAACCAAAACATGTAACTTCATGCTCGGAGTAAGGTTTAACTTTAATGAACATTGAAAAATTTAGAGAAATGGAATTTCTGGTAAATGGCAAGTTCCATAGACTGGTTTGTGAAATGAAAATCTAAACAAAGATCTTATCTTACCTGGTAAATGATCTTGAAGCTTGAGAATGATTATTGCAGATCCCCCAACACCAATTTAGAATTTGATCAGCATAGTTGAGTAGCAATTGCTATTTCAGGCATGAACTAAAAAAGAGTGGTAAAAGACTCAAAAATCAAAATCAATGTTACCTATCATAAAGAGTTTCAAAACTTCCCCACCAGACTCCAAACCAATGTTACCAACTATCAAAATGAATATACCAATTCTTGCTCAGAATCAAGATAGGTTCTTGTCCTGATTTTTCAAGATAGGACCTGATAATACAATAAAGTACAGACTCCATTACATTTCAATGAATTATTAGACAATCATTGCCTTCTCACGTTATTCTTCCAAACGAATTCACTCATCTTCAGCATGCTGAAGAAAATCACAATGACTATAATGCTCAATGAAGATAAATGCAAGAATCAAACAAAAAAATCATAAACCTTGACTATGTAAAAAGGGACGCACATTTATTTTGATATGGACCTAAGTTTCTGCACAAAAATATACTTTCACCAGACCATCACAAAGTGAAGAAGCATGATAAAGCACTCTATATATCAGTCTTTTTTTCTACAGTAATGTCACAAAATTGCAATATAAGAGAGGAAGACATTACTTGTTGAAGTATTAGTTATGCTGTTATAATAACGTAAAAACTGCTCTGTGGTAAATAATAATATGTGGATTATTACGCGATGAATAATAAATGAGTAATTCTTTCTCCTTATGCTCAGATTAAACCAGGCAAAAAGGAGAATTAAAGATTTCTTGAATTTCCTTTAATTCGTACCATGCCAATACATTCTTGAAAACTACTGTTTCTTTGAATTCCTTAAAAACATAATTTTCTTAAGAAGAATGCAGGCAAGATCTCGAGTGTATTCTCTCACTCTCTTTCTCTTTTAAGGGCTGTTGGTTTGTTTTTCAAAAATGGAGAATCATAGGCAAAACATAGAGAAAAGGGCAACCAACCTTGATAAGAAATACCATAGTCTCTGCTGCTTCATTCTTGCCTTTATAGACTGACCTAACACAAGGGAATTCACAAGACGTAAAGTGTCATTAGGCCAATTCTTTCTCCTAAGGCTCAAATTCGTTAAACTAGCCAAAAGAAGACAAAGCAACCGGCATGGCTGCAGACCTCAGTTGCAAAATGGAGATGCCTTACAGGGTTGCCTCGCAAAGATAAGGGTAGCTCCAATGCCCGACCCAAGTATTGGCCGCAAAAGTTACCCTTGAAGCTTATAAATCTGGAATGGCTGCAAGCATTAGTTGCCCTTGTGGGACAGAGAAAAAATACCATGAAACGGAACTTTCTCCAAAATCTCACACACCCACATGAGATGCCATG</genome_strand>
        <mrna_strand>AAAACCAAAATAAAATGTAAGCATTAATGTTTNTGTGTTGTGTACAGTCATACCAGTTCTCCCAACTACAAGTAAAACCACAAAATAATAAATAAAGAACATCTAT-----AAAAAAGATATTAGTAAGATATTAATGAACAAAACCGTCAAACAGCCTATTAGTTGAGTAATGCATGCAATCCAAAAAAAGGAACATTTCCC-AAATCTCACAGACCCGCCTGAAGTGCCGTGCCAAGCAACAGTTTCTTAGTTCGACATGAGACATGTTTGATTGAACATCAATAGATGAAAACCTCCAAATCCTCATTGTGTATTAAACAAAGTAGAGTGAGTAATAATAACAAGAAAAGAGGAAGTGCATGTGTAATATCACGAAAAGGGTGGTCCGGTGAGAGATGGGAAAGAAACTCATCTCAAAACATGAATCAGCTCAAAAGCATAG-AAA-CATGTC--AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAAGCATTAGTT-AGCTT-TTAGAGATAG-AAAAACACCAATAAATGGTACTTTCTTC---A--TCACATACCCACATGAGATGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583403" ref_strand="+" ref_description="SGN-U583403 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|218200935|gb|EEC83362.1| (e_value=1e-55) hypothetical; (*ATH) AT3G17450.1 (e_value=6e-15) | Symbol: None | hAT dimerisation domain-containing protein, contains Pfam profile PF04937: Protein of unknown function (DUF 659) | chr3:5972708-5976124 REVERSE | Aliases: MTO12.4; ">
      <seq>ggacaaattagccgctaggatgttctacgtatcaggtttatcattcaactttgccaactctccttattttaaaaaatattctaagtttctagccgaaaattccattcccagttatattcccccatcatataatagattgaggtcaactcttttagctcaagaaaaaacacatattgatagaaagttgcaaccaataaaaggtacatgaaaaaagaaaggattgtcgatttgttcggatggatggtccgatactaaaagacgacctttgatcaatataatgacatcatctagtggaggcccaatgtttttgaattcaatcaattctagtggaatcgtaaaaattgtaggttcaaacaatgttgtttgagttattacggataatgcaagtaatatgaaacttgccggtactatagtggagcaaaaatatcctcatatattttgaactccttgcgttgttcattgtttgaatctagctttgaaaagtatgtgccaactttcgaaaaaatcacctcactttactaattgtaaatgaattttagagttacttagtgaagtgagcaatttaaagaattttgttgtgaaccatgacatggcacatgcactttttcaaaaacattcgaatttgtgtttgttgaaggttggtgcaacaagattttgcctcacacatcattatgaccacctgaatttgcaaagtaaaatcttctttggagaaatggtcatggatgatgaatggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35282" stop="33905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34983" g_stop="34654" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34603" g_stop="34205" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="737" r_length="408" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U583403" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U583403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34983" e_stop="34654"/>
          <exon e_start="34603" e_stop="34205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAG--------AAAA-TGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGA-TTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATA</genome_strand>
        <mrna_strand>GGACAAATTAGCCGCTAGGATGTTCTACGTATCAGGTTTATCATTCAACTTTGCCAACTCTCCTTATTTT-AAAAAATATTCTAAGTTTCTAGCCGAAAATTCCATTCCCAGTTATATTCCCCCATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGGTACATGAAAAAAGAAAGGATTGTCGATTTGTTCGGATGGATGGTCCGATACTAAAAGACGACCTTTGATCAATATAATGACATCATCTAGTGGAGGCCCAATGTTTTTGAATTCAATCAATTCTAGTG..................................................GAATCGTAAAAATTGTAGGTTCAAACAATGTTGTTTGAGTTATTACGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGAACTCCTTGCGTTGTTCATTGTTTGAATCTAGCTTTGAAAAGTATGTGCCAACTTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAGTGAGCAATTTAAAGAATTTTGTTGTGAACCATGACATGGCACATGCACTTTTTCAAAAACATTCGAATTTGTGTTTGTTGAAGGTTGGTGCAACAAGATTTTGCCTCACACATCATTATGACCACCTGAATTTGCAAAGTAAAATCTTCTTTGGAG-AAATGGTCATGGATGATGAATGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591120" ref_strand="-" ref_description="SGN-U591120 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gtatgaaattttaaaaaatagggaaaagggtctgatatacctctcaactttgtcatttagagctgatatatccctcgtaataaaagtggttcatatatgcccttatcgttatacaaacggctcacatatacccctgccgttagaaaatggctcacatatacccttcatttaacgaaagttaaaaaattagttttaaatttatatttgttacttctaatttttttttaaaaaaaatatttagggatatatatgattcttctatcaaagttcaaggtatattttaattttttcatacaaaaattattttttgacttcttttattataataatttgagtttcttattcttattttgtttttttctttcattccttagtttaaataaaaaaaattcaaatattttttttgtgtgtattgtaatttaatttcgtattcgaagaaaaaattggtcatctacaataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="45393" stop="43750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45100" g_stop="44945" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44944" i_stop="44357" i_length="588">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44356" g_stop="44050" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="461" r_length="304" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U591120" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591120" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45100" e_stop="44945"/>
          <exon e_start="44356" e_stop="44050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTATTTTAAAATAT-GGAAAAAGGGTTTAATATATCCCTCAACTTTGTAATGTAGAGCTGATACACCCCTCGTTATAAAAGTGGTTCATATATACCCTAACCGTTATACAAACGGCTCATATATACCCCTGCCGTTACAAAATGGCTCACATATACCCTTCATTTAACGGAATTTTAAATAATTAGTTTTAAATTTATATTTATTACTTATAATTTTTTAAAAAAAATTATTTAGTGGTATATATGATTCTTCTATAAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTGACTTCTTTAATCATAATTATTTGAATTTCTTATTCTTATTATATTTTTTTCTTTCATTCCTTAATTTAAAGAGAAAAAACTAAACTATTTTTTTGTGTATATTGTAATTTAATTACGTATTCAGAAAAAATTTTGGTCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAACCAAAAAAGTCAAAAAAAAATATGTTTGACAAAGATTAAATTTACTCATATGGGATATTTTTTAGAAAAAAATAATAAAAATTTAGATTGAAAATTATTATTTTTTCATGGGAAAAGAGTCTGATATACCCTTCAACTTTGTCATTTGCAGCTGATATACCCCTCGTTATAAAAGTGGCTCATATATGCCCTTACCGTTATACAAACGGCTCATATACCCTTCATTTGACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTTACTTCTAATTTTTTTTAAAAAAAATTATTTAGGGGTATATATGATTATTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGAC-TCTTTTATTATAATTATTTGAGTTTCTTATTCTTATTTTATTTTTTTCTTTCATTCCTTAGTTTAAAGAGAAAAAAATTAAAATATTTTTTGTGTGTGTATTATAATTTAATTTCGTATTCGAAGAAAAAATTTGGTCATCTACAATAAG</genome_strand>
        <mrna_strand>GTATGAAATTTTAAAAAATAGGGAAAAGGGTCTGATATACCTCTCAACTTTGTCATTTAGAGCTGATATATCCCTCGTAATAAAAGTGGTTCATATATGCCCTTATCGTTATACAAACGGCTCACATATACCCCTGCCGTTAGAAAATGGCTCACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCTTCATTTAACGAAAGTTAAAAAATTAGTTTTAAATTTATATTT-GTTACTTCTAATTTTTTTTTAAAAAAAATATTTAGGGATATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAA-TTTTTTCATACAAAAATTATTTTTTGACTTCTTTTATTATAATAATTTGAGTTTCTTATTCTTATTTTGTTTTTTTCTTTCATTCCTTAGTTTAAATA-AAAAAAATTCAAATATTTTTTTTGTGTGTATTGTAATTTAATTTCGTATTCGAAGAAAAAA-TTGGTCATCTACAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596069" ref_strand="+" ref_description="SGN-U596069 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaattttacatgagtgagtaagaagaacaagaaaagtaaaaggtcatgtagtttcaccaaagggatgatatagtgacaaaacaactgaactttgcaatgcccaaacatgattagttcaaaagcttcaaaaccaggcatggcagcaagcaccagctttcctaggagacagagaagaaagaccaataagtggaacatttcccaaaatctcatagacccacctgaagtgtcgtgccaagcagaagttctttagtttgacatgagacatgtttaattgaacatcgatggatgaaaacctccaaaacctcattgtgtataaacggagcagagtgagtataaagaacaagaaaagagaaagtgcatgtgtaatatcacaaaaagggtggttcgactgagggataagtaagaaactcaacccaaaacacgaatcagcccaaaagcttagaaacatgtcatggctgcacgcattagttagccttgagagacagaaaaaacaccaagaaatggtacttcttcaaaaatctcagagacccacatgagatgccatgccaaaaaacagtttttcagctcaagagtgaacaggtttgattgcccttttgagttatattggaaagagcactaaaaataagaaaaaggaaaggtcgtgtgtgatttcaccaaaatggtggtttggcgaaagaaacaaaactgaactctataaatccaaaacatgatgagctcagaagaattgaaatctgtcgtggctacaagcatcatcagtcgtgtgagatggagaagaacaccatgagatggaaatttaattccaatctcatagacccacctgaaagagcacagaaatattgaactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="76734" stop="47711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48862" g_stop="48011" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="846" r_length="846" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U596069" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48862" e_stop="48011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAATTTTACATGAGTAATAAGAACAAAAAAAGTAGAAGGTCATGTAGTTTCACCAAAGGGATGATATAGTGACAAAACAATTGAACTTTGCAATG-CCAAACATGATTAGCTCAAAAGCTTCGAAACCCAGGCATGGCAGCAAGCACTAGTTTTCCTATGAGACAGAGAAGAAAGACCAATAAGTGGAACATTTCCCAAAATCTCATAGACCCACCTGAAGTGTCGTGCCAAGCAAAAGTTCTTTAGTTTGACATGAGACATGTTTAATTGAACATCCATGGATAAAAACCTCCAAAACCTCATTGTGTATAAACGGAGCAGAGTGAGTATAAAGAACAAGAAAAGAGAAAGTGCATGTGTAATATCACAAAAAGGGTGGTTCAACTGAGGGGTGGGTAAGAAACTCAACCCAAAACACGAATCAGCCCAAAAGCTTAGAAACATGTCATGGCTGCAAGCATTAGTTAGCCTTGAGAGACTGAGAAAAAACACCAAGAAATGGTACTTCTTAAAAAATCTCAGAGACCCACATAAGATGCCATGCCAAAAAACAGTTTTTCAGCTCAAGAGTGAACAGGTTTGATTGCCCTTTTGAGTTAAATTGGAAAGAGCACTAAAAATAAGAAAAATGGAAGGTCGTGTGTGATTTCACCAAAATAGTGGTCTGGCGAAAGAAACAAAACTGAACTCTATAAATCCAAAACACGATGAGCTCAGAAGAATTGAAATCTGTCGTGGCTACAAGCATCAATCAGTCGTGTGAGATGGACAAGAAACACCATGAGATGGAAATTTAATTCCAATTTGATAGACCCACCTG-GAGAGCAACAAGAAATATTGAACTCCC</genome_strand>
        <mrna_strand>GAATTTTACATGA-GTGAGTAAGAAGAACAAGAAAAGTAAAAGGTCATGTAGTTTCACCAAAGGGATGATATAGTGACAAAACAACTGAACTTTGCAATGCCCAAACATGATTAGTTCAAAAGCTTC-AAAACCAGGCATGGCAGCAAGCACCAGCTTTCCTAGGAGACAGAGAAGAAAGACCAATAAGTGGAACATTTCCCAAAATCTCATAGACCCACCTGAAGTGTCGTGCCAAGCAGAAGTTCTTTAGTTTGACATGAGACATGTTTAATTGAACATCGATGGATGAAAACCTCCAAAACCTCATTGTGTATAAACGGAGCAGAGTGAGTATAAAGAACAAGAAAAGAGAAAGTGCATGTGTAATATCACAAAAAGGGTGGTTCGACTGAGGGATAAGTAAGAAACTCAACCCAAAACACGAATCAGCCCAAAAGCTTAGAAACATGTCATGGCTGCACGCATTAGTTAGCCTTGAGAGAC--AGAAAAAACACCAAGAAATGGTACTTCTTCAAAAATCTCAGAGACCCACATGAGATGCCATGCCAAAAAACAGTTTTTCAGCTCAAGAGTGAACAGGTTTGATTGCCCTTTTGAGTTATATTGGAAAGAGCACTAAAAATAAGAAAAAGGAAAGGTCGTGTGTGATTTCACCAAAATGGTGGTTTGGCGAAAGAAACAAAACTGAACTCTATAAATCCAAAACATGATGAGCTCAGAAGAATTGAAATCTGTCGTGGCTACAAGCATC-ATCAGTCGTGTGAGATGGAGAAG-AACACCATGAGATGGAAATTTAATTCCAATCTCATAGACCCACCTGAAAGAGC-AC-AGAAATATTGAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576565" ref_strand="+" ref_description="SGN-U576565 Tomato 200607#2 [21 ESTs aligned] (*GB) gi|157354888|emb|CAO48234.1| (e_value=5e-90) unnamed; (*ATH) AT2G18030.1 (e_value=8e-85)  Symbol: None | peptide methionine sulfoxide reductase family protein, similar to SP:P08761 Ecdysone-induced protein 28/29 kDa {Drosophila melanogaster}; contains Pfam profile PF01625: Peptide methionine sulfoxide reductase | chr2:7847190-7848740 FOR... ; (*SWP) sp|P08761|MSRA_DROME (e_value=5e-32) Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD; ">
      <seq>ggatttgatggtattttctgacaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagagctttgtccatcgagaatccaaaagcggattgatggaaagatcaatgatattatcaagaaaggttggcccattctcaaagaagtttaggtatacatctcaaggttatatgagatcgtgcagaccttcgttaatgtgtagaaactgcgagtttcgtttgcttaagtaatgtcttgcagatgacagaataccttcatccgaatttatcctacatcatagattctgaaagtctgaatagcgagcagagacctttttacagagatcaatcaaaatttgtttgtacaatcagaataggttgattggactagacttagctgctgcagctggtggaataaatctaccggagcttccgctttccctttttttgcagggattaatcaaaattttttgtactatcttaatgttctgtataggtaataggctgattgcaccaaaactgaacattattgtgatgtaaggctgtgggaccttaaaatcatgttgttgtagcactttataattctatgtatgcttggctacccctttttcatgttgtagtagttgcaatttgcaaatactatttagctgattggatttttctttttataaatttggccacttctcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96866" stop="91214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96567" g_stop="96114" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="567" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="712" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="91514" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="1425" r_length="713" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U576565" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96567" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="91514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATGGTATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGG</genome_strand>
        <mrna_strand>GGATTTGATGGTATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595894" ref_strand="-" ref_description="SGN-U595894 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|116780936|gb|ABK21888.1| (e_value=4e-48) unknown; (*ATH) AT1G20580.1 (e_value=5e-50)  Symbol: None | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative, similar to small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) (Mus musculus) SWISS-PROT:P43331 | chr1:7128878-7130631 FORWARD | Alia... ; (*SWP) sp|P62323|SMD3_XENLA (e_value=2e-30) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3; ">
      <seq>gtttagactctgtcacagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaccctgggtgccccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98531" stop="103447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98831" g_stop="99089" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="312" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="379" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="436" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103145" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="762" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-U595894" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595894" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98831" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</genome_strand>
        <mrna_strand>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584331" ref_strand="+" ref_description="SGN-U584331 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|116780936|gb|ABK21888.1| (e_value=3e-48) unknown; (*ATH) AT1G20580.1 (e_value=5e-50)  Symbol: None | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative, similar to small nuclear ribonucleoprotein Sm D3 (snRNP core protein D3, Sm-D3) (Mus musculus) SWISS-PROT:P43331 | chr1:7128878-7130631 FORWARD | Alia... ; (*SWP) sp|P62323|SMD3_XENLA (e_value=1e-30) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3; ">
      <seq>nactagtctctcgaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98554" stop="103429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98849" g_stop="99089" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="248" r_length="240" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="301" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="368" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="425" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103129" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="735" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-U584331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98849" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTC</genome_strand>
        <mrna_strand>T-CTCGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595892" ref_strand="-" ref_description="SGN-U595892 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgtgctattgctatgcgagctcaagctcagtctgctggtcgtggagcaccacctggttggggccctgtgccacctgtaagaaaatgattgctttatgcaggattttattttatctgggttagcaatcgtagaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggttcaatagtctgaggtacattcagctactgtgcaccttaacctttttcccatacgactatagaatgctgcaatatgagtgcttttcaagctgcctctgtgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="102012" stop="103380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102312" g_stop="102335" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102820" g_stop="103080" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="285" r_length="261" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-U595892" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102312" e_stop="102335"/>
          <exon e_start="102820" e_stop="103080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGT</genome_strand>
        <mrna_strand>CGTGCTATTGCTATGCGAGCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGTCTGCTGGTCGTGGAGCACCACCTGGTTGGGGCCCTGTGCCACCTGTAAGAAAATGATTGCTTTATGCAGGATTTTATTTTATCTGGGTTAGCAATCGTAGAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTTCAATAGTCTGAGGTACATTCAGCTACTGTGCACCTTAACCTTTTTCCCATACGACTATAGAATGCTGCAATATGAGTGCTTTTCAAGCTGCCTCTGTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603131" ref_strand="+" ref_description="SGN-U603131 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|20149050|gb|AAM12780.1| (e_value=2e-42) auxin-induced SAUR-like protein [Capsicum annuum]; (*ATH) AT4G34760.1 (e_value=4e-34) | Symbol: None | auxin-responsive family protein, auxin-induced protein X15, Glycine max, PIR2:JQ1097 | chr4:16582188-16582884 REVERSE | Aliases: F11I11.11; (*SWP) sp|P33080|AX10A_SOYBN (e_value=1e-15) Auxin-induced protein X10A OS=Glycine max; ">
      <seq>gaaatattaataatttctctttctaaaacaacaacaaaatgggtttaaagaaaacaagtagcagcaaacaacaaacagcagctttgaaacaaatgatcaaaagatgttctagttttggaaaaaatgagaataatggtttcccacatgatgttccaaaaggacattttgttgtgtacgttggagaaaatagaagtagatatataatacctatttcttggttaacatatcctcaatttcaaaatttgcttcaaagagctgaagaagaatttggatttagtcatgatatgggcattactattccttgtcatgaacatgatttttgttcacttatttcaatgtttagatgaaacaacaaaatataatcttcctttttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="108609" stop="107632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108310" g_stop="107932" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-U603131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108310" e_stop="107932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</genome_strand>
        <mrna_strand>GAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="25295" PGL_stop="23293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25295" e_stop="24837"/>
            <exon e_start="23386" e_stop="23293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.374" acc_prob="0.000" e_score="0.939"/>
          <exon-only e_score="0.766"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="25295" e_stop="24837" e_length="459"/>
          </exon>
          <intron i_serial="1" don_prob="0.374" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24836" i_stop="23387" i_length="1450"/>
          </intron>
          <exon e_serial="2" e_score="0.766">
            <gDNA_exon_boundary e_start="23386" e_stop="23293" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25295" stop="24837"/>
              <exon start="23386" stop="23293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCAAAATAAAATGTAAGCGTTAATGTTTTGTGTTGTGTACAGTCATACCAGTTCTCCCAATTACAAGTAAAACCACAAAATAATAAATAAAGAACATCTATAAAAAAAAAAAAATATTAGTGAGATATTAATGAACAAAACCGTCAAACAGCCCATTAGTTGAGTAATGCATGCAATCCCAAAAAAGGAACATTTCCCAAAATCTCATAGACCCGCCTGAAGTGCCGTGCCAAGCAACAGTTTCTTAGTTCGACATGAGATATGTTTGATTGAACATCAATAGATGAAAACCTCCAAATCATCATTGTGTATTAAACAAAGAAGAGTGAGTAATATTAACAAGAAAAGAGGAAGTGCATGTGTAATATCACGAAAAGGGTGGTCCGGTGAGAGATGGGAAAGAAACTCCACTCAAAACATGAATCAGCTCAAAAGCTTAGAAAAGCGTGACAGAT : GGCTGCAAGCATTAGTTGCCCTTGTGGGACAGAGAAAAAATACCATGAAACGGAACTTTCTCCAAAATCTCACACACCCACATGAGATGCCATG</gDNA_template>
            <first_frame> K  T  K  I  K  C  K  R  *  C  F  V  L  C  T  V  I  P  V  L  P  I  T  S  K  T  T  K  *  *  I  K  N  I  Y  K  K  K  K  I  L  V  R  Y  *  *  T  K  P  S  N  S  P  L  V  E  *  C  M  Q  S  Q  K  R  N  I  S  Q  N  L  I  D  P  P  E  V  P  C  Q  A  T  V  S  *  F  D  M  R  Y  V  *  L  N  I  N  R  *  K  P  P  N  H  H  C  V  L  N  K  E  E  *  V  I  L  T  R  K  E  E  V  H  V  *  Y  H  E  K  G  G  P  V  R  D  G  K  E  T  P  L  K  T  *  I  S  S  K  A  *  K  S  V  T  D  :  G  C  K  H  *  L  P  L  W  D  R  E  K  I  P  *  N  G  T  F  S  K  I  S  H  T  H  M  R  C  H  </first_frame>
            <second_frame>  K  P  K  *  N  V  S  V  N  V  L  C  C  V  Q  S  Y  Q  F  S  Q  L  Q  V  K  P  Q  N  N  K  *  R  T  S  I  K  K  K  K  Y  *  *  D  I  N  E  Q  N  R  Q  T  A  H  *  L  S  N  A  C  N  P  K  K  G  T  F  P  K  I  S  *  T  R  L  K  C  R  A  K  Q  Q  F  L  S  S  T  *  D  M  F  D  *  T  S  I  D  E  N  L  Q  I  I  I  V  Y  *  T  K  K  S  E  *  Y  *  Q  E  K  R  K  C  M  C  N  I  T  K  R  V  V  R  *  E  M  G  K  K  L  H  S  K  H  E  S  A  Q  K  L  R  K  A  *  Q  M :   A  A  S  I  S  C  P  C  G  T  E  K  K  Y  H  E  T  E  L  S  P  K  S  H  T  P  T  *  D  A  M </second_frame>
            <third_frame>   N  Q  N  K  M  *  A  L  M  F  C  V  V  Y  S  H  T  S  S  P  N  Y  K  *  N  H  K  I  I  N  K  E  H  L  *  K  K  K  N  I  S  E  I  L  M  N  K  T  V  K  Q  P  I  S  *  V  M  H  A  I  P  K  K  E  H  F  P  K  S  H  R  P  A  *  S  A  V  P  S  N  S  F  L  V  R  H  E  I  C  L  I  E  H  Q  *  M  K  T  S  K  S  S  L  C  I  K  Q  R  R  V  S  N  I  N  K  K  R  G  S  A  C  V  I  S  R  K  G  W  S  G  E  R  W  E  R  N  S  T  Q  N  M  N  Q  L  K  S  L  E  K  R  D  R   : W  L  Q  A  L  V  A  L  V  G  Q  R  K  N  T  M  K  R  N  F  L  Q  N  L  T  H  P  H  E  M  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25008" stop="24837"/>
                    <exon start="23386" stop="23295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKTSKSSLCIKQRRVSNINKKRGSACVISRKGWSGERWERNSTQNMNQLKSLEKRDRWLQALVALVGQRKNTMKRNFLQNLTHPHEMP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="34983" PGL_stop="34205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34983" e_stop="34654"/>
            <exon e_start="34603" e_stop="34205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.945"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="34983" e_stop="34654" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="34603" e_stop="34205" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34983" stop="34654"/>
              <exon start="34603" stop="34205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTG : AAAATGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGATTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATA</gDNA_template>
            <first_frame> R  Q  I  S  R  *  V  V  L  R  I  R  V  I  I  Q  L  C  Q  H  S  L  F  *  K  N  I  V  S  F  *  P  K  I  S  F  P  V  I  F  P  N  H  I  I  D  *  G  Q  L  F  *  L  K  K  K  H  I  L  I  E  S  C  N  Q  *  K  L  H  E  K  R  K  D  C  R  F  V  W  M  N  G  P  I  L  K  D  D  I  *  S  I  *  *  H  H  L  V  E  V  Q  C  F  *  I  Q  S  I  L  V  :  K  M  *  V  Q  T  M  L  F  K  F  L  W  I  M  Q  V  I  *  N  L  P  V  L  *  W  S  K  N  I  L  I  Y  F  G  L  F  A  L  L  I  V  *  I  Q  L  *  K  V  C  A  N  L  R  K  N  H  L  T  L  L  I  V  N  E  F  *  S  Y  L  V  K  *  V  I  *  R  I  L  L  *  T  M  T  R  H  M  H  F  F  K  N  I  R  I  C  V  C  *  R  L  V  K  Q  D  L  P  H  T  S  L  *  P  P  E  F  A  K  *  N  L  L  W  R  K  W  S  W  M  M  N  G  I </first_frame>
            <second_frame>  D  K  L  A  A  R  L  F  Y  A  L  G  L  S  F  N  F  V  N  T  P  Y  F  K  K  I  L  *  V  S  S  R  K  F  H  S  R  L  Y  S  P  I  I  *  *  I  E  V  N  S  F  S  S  R  K  N  T  Y  *  *  K  V  A  T  N  K  S  Y  M  K  K  E  R  I  V  D  L  F  G  *  M  V  R  Y  *  K  T  T  F  D  Q  Y  N  D  I  I  W  W  R  S  N  V  F  E  F  N  Q  F  *  * :   K  C  R  F  K  Q  C  C  S  S  S  Y  G  *  C  K  *  Y  E  T  C  R  Y  Y  S  G  A  K  I  S  S  Y  I  L  D  Y  L  R  C  *  L  F  E  S  N  F  E  K  Y  V  P  T  F  E  K  I  T  S  L  Y  *  L  *  M  N  F  R  V  T  *  *  N  E  *  F  K  E  F  C  C  E  P  *  H  G  T  C  T  F  S  K  T  F  G  F  V  F  V  E  G  W  *  N  K  I  C  L  T  H  H  Y  D  H  P  N  S  L  S  K  I  C  F  G  E  N  G  H  G  *  *  M  E   </second_frame>
            <third_frame>   T  N  *  P  L  G  C  S  T  H  *  G  Y  H  S  T  L  S  T  L  L  I  L  K  K  Y  C  K  F  L  A  E  N  F  I  P  G  Y  I  P  Q  S  Y  N  R  L  R  S  T  L  L  A  Q  E  K  T  H  I  D  R  K  L  Q  P  I  K  V  T  *  K  K  K  G  L  S  I  C  L  D  E  W  S  D  T  K  R  R  H  L  I  N  I  M  T  S  S  G  G  G  P  M  F  L  N  S  I  N  S  S   : E  N  V  G  S  N  N  V  V  Q  V  L  M  D  N  A  S  N  M  K  L  A  G  T  I  V  E  Q  K  Y  P  H  I  F  W  T  I  C  V  V  N  C  L  N  P  T  L  K  S  M  C  Q  P  S  K  K  S  P  H  F  T  N  C  K  *  I  L  E  L  L  S  E  M  S  N  L  K  N  F  V  V  N  H  D  T  A  H  A  L  F  Q  K  H  S  D  L  C  L  L  K  V  G  E  T  R  F  A  S  H  I  I  M  T  T  R  I  R  *  V  K  S  A  L  E  K  M  V  M  D  D  E  W  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34774" stop="34654"/>
                    <exon start="34603" stop="34410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKGLSICLDEWSDTKRRHLINIMTSSGGGPMFLNSINSSENVGSNNVVQVLMDNASNMKLAGTIVEQKYPHIFWTICVVNCLNPTLKSMCQPSKKSPHFTNCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45100" PGL_stop="44050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45100" e_stop="44945"/>
            <exon e_start="44356" e_stop="44050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.846"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.846">
            <gDNA_exon_boundary e_start="45100" e_stop="44945" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44944" i_stop="44357" i_length="588"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="44356" e_stop="44050" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45100" stop="44945"/>
              <exon start="44356" stop="44050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591120" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCTATTTTAAAATATGGAAAAAGGGTTTAATATATCCCTCAACTTTGTAATGTAGAGCTGATACACCCCTCGTTATAAAAGTGGTTCATATATACCCTAACCGTTATACAAACGGCTCATATATACCCCTGCCGTTACAAAATGGCTCACAT : ATACCCTTCATTTGACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTTACTTCTAATTTTTTTTAAAAAAAATTATTTAGGGGTATATATGATTATTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGACTCTTTTATTATAATTATTTGAGTTTCTTATTCTTATTTTATTTTTTTCTTTCATTCCTTAGTTTAAAGAGAAAAAAATTAAAATATTTTTTGTGTGTGTATTATAATTTAATTTCGTATTCGAAGAAAAAATTTGGTCATCTACAATAAG</gDNA_template>
            <first_frame> K  L  Y  F  K  I  W  K  K  G  L  I  Y  P  S  T  L  *  C  R  A  D  T  P  L  V  I  K  V  V  H  I  Y  P  N  R  Y  T  N  G  S  Y  I  P  L  P  L  Q  N  G  S  H  :  I  P  F  I  *  R  K  L  K  N  *  F  *  I  Y  I  Y  L  L  L  I  F  F  K  K  N  Y  L  G  V  Y  M  I  I  L  S  K  F  K  V  Y  F  N  F  F  H  T  *  I  I  F  *  L  F  Y  Y  N  Y  L  S  F  L  F  L  F  Y  F  F  L  S  F  L  S  L  K  R  K  K  L  K  Y  F  L  C  V  Y  Y  N  L  I  S  Y  S  K  K  K  F  G  H  L  Q  *  </first_frame>
            <second_frame>  N  S  I  L  K  Y  G  K  R  V  *  Y  I  P  Q  L  C  N  V  E  L  I  H  P  S  L  *  K  W  F  I  Y  T  L  T  V  I  Q  T  A  H  I  Y  P  C  R  Y  K  M  A  H  I :   Y  P  S  F  D  G  S  *  K  I  S  F  K  F  I  F  I  Y  F  *  F  F  L  K  K  I  I  *  G  Y  I  *  L  F  Y  Q  S  S  R  Y  I  L  I  F  F  I  H  K  L  F  F  D  S  F  I  I  I  I  *  V  S  Y  S  Y  F  I  F  F  F  H  S  L  V  *  R  E  K  N  *  N  I  F  C  V  C  I  I  I  *  F  R  I  R  R  K  N  L  V  I  Y  N  K </second_frame>
            <third_frame>   T  L  F  *  N  M  E  K  G  F  N  I  S  L  N  F  V  M  *  S  *  Y  T  P  R  Y  K  S  G  S  Y  I  P  *  P  L  Y  K  R  L  I  Y  T  P  A  V  T  K  W  L  T   : Y  T  L  H  L  T  E  V  K  K  L  V  L  N  L  Y  L  F  T  S  N  F  F  *  K  K  L  F  R  G  I  Y  D  Y  S  I  K  V  Q  G  I  F  *  F  F  S  Y  I  N  Y  F  L  T  L  L  L  *  L  F  E  F  L  I  L  I  L  F  F  S  F  I  P  *  F  K  E  K  K  I  K  I  F  F  V  C  V  L  *  F  N  F  V  F  E  E  K  I  W  S  S  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="48862" PGL_stop="48011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48862" e_stop="48011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="48862" e_stop="48011" e_length="852"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48862" stop="48011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTGAATTTTACATGAGTAATAAGAACAAAAAAAGTAGAAGGTCATGTAGTTTCACCAAAGGGATGATATAGTGACAAAACAATTGAACTTTGCAATGCCAAACATGATTAGCTCAAAAGCTTCGAAACCCAGGCATGGCAGCAAGCACTAGTTTTCCTATGAGACAGAGAAGAAAGACCAATAAGTGGAACATTTCCCAAAATCTCATAGACCCACCTGAAGTGTCGTGCCAAGCAAAAGTTCTTTAGTTTGACATGAGACATGTTTAATTGAACATCCATGGATAAAAACCTCCAAAACCTCATTGTGTATAAACGGAGCAGAGTGAGTATAAAGAACAAGAAAAGAGAAAGTGCATGTGTAATATCACAAAAAGGGTGGTTCAACTGAGGGGTGGGTAAGAAACTCAACCCAAAACACGAATCAGCCCAAAAGCTTAGAAACATGTCATGGCTGCAAGCATTAGTTAGCCTTGAGAGACTGAGAAAAAACACCAAGAAATGGTACTTCTTAAAAAATCTCAGAGACCCACATAAGATGCCATGCCAAAAAACAGTTTTTCAGCTCAAGAGTGAACAGGTTTGATTGCCCTTTTGAGTTAAATTGGAAAGAGCACTAAAAATAAGAAAAATGGAAGGTCGTGTGTGATTTCACCAAAATAGTGGTCTGGCGAAAGAAACAAAACTGAACTCTATAAATCCAAAACACGATGAGCTCAGAAGAATTGAAATCTGTCGTGGCTACAAGCATCAATCAGTCGTGTGAGATGGACAAGAAACACCATGAGATGGAAATTTAATTCCAATTTGATAGACCCACCTGGAGAGCAACAAGAAATATTGAACTCCC</gDNA_template>
            <first_frame> F  L  N  F  T  *  V  I  R  T  K  K  V  E  G  H  V  V  S  P  K  G  *  Y  S  D  K  T  I  E  L  C  N  A  K  H  D  *  L  K  S  F  E  T  Q  A  W  Q  Q  A  L  V  F  L  *  D  R  E  E  R  P  I  S  G  T  F  P  K  I  S  *  T  H  L  K  C  R  A  K  Q  K  F  F  S  L  T  *  D  M  F  N  *  T  S  M  D  K  N  L  Q  N  L  I  V  Y  K  R  S  R  V  S  I  K  N  K  K  R  E  S  A  C  V  I  S  Q  K  G  W  F  N  *  G  V  G  K  K  L  N  P  K  H  E  S  A  Q  K  L  R  N  M  S  W  L  Q  A  L  V  S  L  E  R  L  R  K  N  T  K  K  W  Y  F  L  K  N  L  R  D  P  H  K  M  P  C  Q  K  T  V  F  Q  L  K  S  E  Q  V  *  L  P  F  *  V  K  L  E  R  A  L  K  I  R  K  M  E  G  R  V  *  F  H  Q  N  S  G  L  A  K  E  T  K  L  N  S  I  N  P  K  H  D  E  L  R  R  I  E  I  C  R  G  Y  K  H  Q  S  V  V  *  D  G  Q  E  T  P  *  D  G  N  L  I  P  I  *  *  T  H  L  E  S  N  K  K  Y  *  T  P </first_frame>
            <second_frame>  F  *  I  L  H  E  *  *  E  Q  K  K  *  K  V  M  *  F  H  Q  R  D  D  I  V  T  K  Q  L  N  F  A  M  P  N  M  I  S  S  K  A  S  K  P  R  H  G  S  K  H  *  F  S  Y  E  T  E  K  K  D  Q  *  V  E  H  F  P  K  S  H  R  P  T  *  S  V  V  P  S  K  S  S  L  V  *  H  E  T  C  L  I  E  H  P  W  I  K  T  S  K  T  S  L  C  I  N  G  A  E  *  V  *  R  T  R  K  E  K  V  H  V  *  Y  H  K  K  G  G  S  T  E  G  W  V  R  N  S  T  Q  N  T  N  Q  P  K  S  L  E  T  C  H  G  C  K  H  *  L  A  L  R  D  *  E  K  T  P  R  N  G  T  S  *  K  I  S  E  T  H  I  R  C  H  A  K  K  Q  F  F  S  S  R  V  N  R  F  D  C  P  F  E  L  N  W  K  E  H  *  K  *  E  K  W  K  V  V  C  D  F  T  K  I  V  V  W  R  K  K  Q  N  *  T  L  *  I  Q  N  T  M  S  S  E  E  L  K  S  V  V  A  T  S  I  N  Q  S  C  E  M  D  K  K  H  H  E  M  E  I  *  F  Q  F  D  R  P  T  W  R  A  T  R  N  I  E  L   </second_frame>
            <third_frame>   F  E  F  Y  M  S  N  K  N  K  K  S  R  R  S  C  S  F  T  K  G  M  I  *  *  Q  N  N  *  T  L  Q  C  Q  T  *  L  A  Q  K  L  R  N  P  G  M  A  A  S  T  S  F  P  M  R  Q  R  R  K  T  N  K  W  N  I  S  Q  N  L  I  D  P  P  E  V  S  C  Q  A  K  V  L  *  F  D  M  R  H  V  *  L  N  I  H  G  *  K  P  P  K  P  H  C  V  *  T  E  Q  S  E  Y  K  E  Q  E  K  R  K  C  M  C  N  I  T  K  R  V  V  Q  L  R  G  G  *  E  T  Q  P  K  T  R  I  S  P  K  A  *  K  H  V  M  A  A  S  I  S  *  P  *  E  T  E  K  K  H  Q  E  M  V  L  L  K  K  S  Q  R  P  T  *  D  A  M  P  K  N  S  F  S  A  Q  E  *  T  G  L  I  A  L  L  S  *  I  G  K  S  T  K  N  K  K  N  G  R  S  C  V  I  S  P  K  *  W  S  G  E  R  N  K  T  E  L  Y  K  S  K  T  R  *  A  Q  K  N  *  N  L  S  W  L  Q  A  S  I  S  R  V  R  W  T  R  N  T  M  R  W  K  F  N  S  N  L  I  D  P  P  G  E  Q  Q  E  I  L  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48469" stop="48275"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVGKKLNPKHESAQKLRNMSWLQALVSLERLRKNTKKWYFLKNLRDPHKMPCQKTVFQLKSEQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="96567" PGL_stop="91514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96567" e_stop="96114"/>
            <exon e_start="94964" e_stop="94852"/>
            <exon e_start="94756" e_stop="94612"/>
            <exon e_start="92226" e_stop="91514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.998"/>
          <exon-intron don_prob="0.991" acc_prob="0.007" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="96567" e_stop="96114" e_length="454"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94964" e_stop="94852" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.007">
            <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94756" e_stop="94612" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.945">
            <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92226" e_stop="91514" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="91514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGATGGTATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG : GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG : GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG : AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGG</gDNA_template>
            <first_frame> R  F  D  G  I  F  *  Q  I  G  I  E  Q  L  S  D  K  R  S  W  Q  F  Q  R  E  R  L  E  L  F  R  L  E  N  F  C  R  K  L  G  V  I  G  R  L  P  C  M  C  T  D  E  S  R  *  E  Q  L  L  L  F  T  F  L  L  S  F  P  F  H  D  H  S  A  G  I  E  S  S  S  E  H  P  I  P  R  S  D  P  G  G  S  T  G  C  L  *  S  A  I  T  N  C  S  F  C  S  R  K  L  L  E  I  G  S  V  I  W  L  L  K  R  H  R  K  N  H  R  R  L  F  W  W  F  K  S  Q  S  *  V  Q  K  F  G  R  P  R  *  I  C  T   : G  R  V  *  P  P  S  T  W  F  Q  T  T  I  G  G  L  L  V  *  P  *  F  Q  A  S  L  W  A  R  S  *  C  G  *  P  V  Q  :  V  Y  Y  F  H  K  R  H  *  G  I  Q  I  G  C  C  *  Q  R  K  R  T  I  K  V  K  E  Q  H  C  Y  N  S  N  S  T  A  *  S  F  L  S  C  R  A  *  T  S   : E  I  *  A  Q  A  E  S  L  P  T  S  I  D  G  K  L  A  *  G  G  A  *  E  I  N  T  G  Y  K  T  K  W  L  C  S  R  A  L  S  I  E  N  P  K  A  D  *  W  K  D  Q  *  Y  Y  Q  E  R  L  A  H  S  Q  R  S  L  G  I  H  L  K  V  I  *  D  R  A  D  L  R  *  C  V  E  T  A  S  F  V  C  L  S  N  V  L  Q  M  T  E  Y  L  H  P  N  L  S  Y  I  I  D  S  E  S  L  N  S  E  Q  R  P  F  Y  R  D  Q  S  K  F  V  C  T  I  R  I  G  *  L  D  *  T  *  L  L  Q  L  V  E  *  I  Y  R  S  F  R  F  P  F  F  C  R  D  *  S  K  F  F  V  L  S  *  C  S  V  *  V  I  G  *  L  H  Q  N  *  T  L  L  *  C  K  A  V  G  P  *  N  H  V  V  V  A  L  Y  N  S  M  Y  A  W  L  P  L  F  H  V  V  V  V  A  I  C  K  Y  Y  L  A  D  W  I  F  L  F  I  N  L  A  T  S  R </first_frame>
            <second_frame>  D  L  M  V  F  S  D  K  S  E  L  S  N  Y  R  T  S  G  A  G  N  S  S  E  S  D  W  N  Y  S  A  S  K  I  F  A  G  N  W  V  *  S  A  G  F  P  A  C  V  Q  M  K  V  A  K  S  N  Y  F  F  S  H  F  C  F  H  F  L  F  T  I  I  L  L  A  L  N  P  V  L  S  I  R  F  P  D  R  I  Q  E  V  P  Q  D  A  S  N  Q  P  L  Q  T  A  V  F  A  L  G  S  F  W  R  S  E  A  S  F  G  C  L  N  G  I  V  R  T  T  V  G  Y  S  G  G  S  K  A  N  P  E  Y  R  N  L  G  D  H  A  E  S  V  Q  :  V  E  Y  D  P  R  V  L  G  F  R  Q  L  L  E  V  F  W  S  S  H  D  S  R  Q  V  F  G  Q  G  P  D  V  G  N  Q  Y  R :   S  I  I  F  T  S  G  T  E  E  S  R  L  A  A  V  S  K  E  R  E  Q  S  K  S  K  S  S  I  V  T  T  Q  I  Q  Q  L  E  A  F  Y  P  A  E  P  E  H  Q  :  K  F  E  L  K  R  N  P  F  L  L  Q  L  M  G  N  L  P  E  E  E  L  E  R  S  T  L  A  T  K  L  N  G  Y  A  A  E  L  C  P  S  R  I  Q  K  R  I  D  G  K  I  N  D  I  I  K  K  G  W  P  I  L  K  E  V  *  V  Y  I  S  R  L  Y  E  I  V  Q  T  F  V  N  V  *  K  L  R  V  S  F  A  *  V  M  S  C  R  *  Q  N  T  F  I  R  I  Y  P  T  S  *  I  L  K  V  *  I  A  S  R  D  L  F  T  E  I  N  Q  N  L  F  V  Q  S  E  *  V  D  W  T  R  L  S  C  C  S  W  W  N  K  S  T  G  A  S  A  F  P  F  F  A  G  I  N  Q  N  F  L  Y  Y  L  N  V  L  Y  R  *  *  A  D  C  T  K  T  E  H  Y  C  D  V  R  L  W  D  L  K  I  M  L  L  *  H  F  I  I  L  C  M  L  G  Y  P  F  F  M  L  *  *  L  Q  F  A  N  T  I  *  L  I  G  F  F  F  L  *  I  W  P  L  L   </second_frame>
            <third_frame>   I  *  W  Y  F  L  T  N  R  N  *  A  I  I  G  Q  A  E  L  A  I  P  A  R  A  T  G  T  I  P  P  R  K  F  L  P  E  I  G  C  N  R  P  A  S  L  H  V  Y  R  *  K  S  L  R  A  T  T  S  F  H  I  F  A  F  I  S  F  S  R  S  F  C  W  H  *  I  Q  F  *  A  S  D  S  Q  I  G  S  R  R  F  H  R  M  P  L  I  S  H  Y  K  L  Q  F  L  L  S  E  A  S  G  D  R  K  R  H  L  A  A  *  T  A  S  *  E  P  P  S  V  I  L  V  V  Q  K  P  I  L  S  T  E  I  W  A  T  T  L  N  L  Y  R :   S  S  M  T  P  E  Y  L  V  S  D  N  Y  W  R  S  S  G  L  A  M  I  P  G  K  S  L  G  K  V  L  M  W  V  T  S  T   : G  L  L  F  S  Q  A  A  L  R  N  P  D  W  L  L  L  A  K  K  E  N  N  Q  S  Q  R  A  A  L  L  Q  L  K  F  N  S  L  K  L  F  I  L  Q  S  L  N  I  R :   N  L  S  S  S  G  I  P  S  Y  F  N  *  W  E  T  C  L  R  R  S  L  R  D  Q  H  W  L  Q  N  *  M  A  M  Q  Q  S  F  V  H  R  E  S  K  S  G  L  M  E  R  S  M  I  L  S  R  K  V  G  P  F  S  K  K  F  R  Y  T  S  Q  G  Y  M  R  S  C  R  P  S  L  M  C  R  N  C  E  F  R  L  L  K  *  C  L  A  D  D  R  I  P  S  S  E  F  I  L  H  H  R  F  *  K  S  E  *  R  A  E  T  F  L  Q  R  S  I  K  I  C  L  Y  N  Q  N  R  L  I  G  L  D  L  A  A  A  A  G  G  I  N  L  P  E  L  P  L  S  L  F  L  Q  G  L  I  K  I  F  C  T  I  L  M  F  C  I  G  N  R  L  I  A  P  K  L  N  I  I  V  M  *  G  C  G  T  L  K  S  C  C  C  S  T  L  *  F  Y  V  C  L  A  T  P  F  S  C  C  S  S  C  N  L  Q  I  L  F  S  *  L  D  F  S  F  Y  K  F  G  H  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96443" stop="96114"/>
                    <exon start="94964" stop="94852"/>
                    <exon start="94756" stop="94612"/>
                    <exon start="92226" stop="92029"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGFPACVQMKVAKSNYFFSHFCFHFLFTIILLALNPVLSIRFPDRIQEVPQDASNQPLQTAVFALGSFWRSEASFGCLNGIVRTTVGYSGGSKANPEYRNLGDHAESVQVEYDPRVLGFRQLLEVFWSSHDSRQVFGQGPDVGNQYRSIIFTSGTEESRLAAVSKEREQSKSKSSIVTTQIQQLEAFYPAEPEHQKFELKRNPFLLQLMGNLPEEELERSTLATKLNGYAAELCPSRIQKRIDGKINDIIKKGWPILKEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91880" stop="91662"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAETFLQRSIKICLYNQNRLIGLDLAAAAGGINLPELPLSLFLQGLIKIFCTILMFCIGNRLIAPKLNIIVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="98831" PGL_stop="103145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98831" e_stop="99089"/>
            <exon e_start="102014" e_stop="102066"/>
            <exon e_start="102139" e_stop="102205"/>
            <exon e_start="102279" e_stop="102335"/>
            <exon e_start="102820" e_stop="103145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98831" e_stop="99089" e_length="259"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102014" e_stop="102066" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102139" e_stop="102205" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102279" e_stop="102335" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102820" e_stop="103145" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98831" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595894" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98849" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102312" stop="102335"/>
              <exon start="102820" stop="103080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595892" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</gDNA_template>
            <first_frame> V  *  T  L  S  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  K  R  Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  P  W  V  P  Q </first_frame>
            <second_frame>  F  R  L  C  H  S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  G  K  G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  H  P  G  C  P   </second_frame>
            <third_frame>   L  D  S  V  T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   E  K  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F  T  L  G  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98910" stop="99089"/>
                    <exon start="102014" stop="102066"/>
                    <exon start="102139" stop="102205"/>
                    <exon start="102279" stop="102335"/>
                    <exon start="102820" stop="102882"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGTSLGVGRGRAIAMRAKAQAAGRGAPPGRGTVPPVRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="108310" PGL_stop="107932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108310" e_stop="107932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="108310" e_stop="107932" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108310" stop="107932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</gDNA_template>
            <first_frame> K  I  L  I  I  S  L  S  K  T  T  T  K  W  V  *  R  K  Q  V  A  A  N  N  K  Q  Q  L  *  N  K  *  S  K  D  V  L  V  L  E  K  M  R  I  M  V  S  H  M  M  F  Q  K  D  I  L  L  C  T  L  E  K  I  E  V  D  I  *  Y  L  F  L  G  *  H  I  L  N  F  K  I  C  F  K  E  L  K  K  N  L  D  L  V  M  I  W  A  L  L  F  L  V  M  N  M  I  F  V  H  L  F  Q  C  L  D  E  T  T  K  Y  N  L  P  F  S  F  </first_frame>
            <second_frame>  K  Y  *  *  F  L  F  L  K  Q  Q  Q  N  G  F  K  E  N  K  *  Q  Q  T  T  N  S  S  F  E  T  N  D  Q  K  M  F  *  F  W  K  K  *  E  *  W  F  P  T  *  C  S  K  R  T  F  C  C  V  R  W  R  K  *  K  *  I  Y  N  T  Y  F  L  V  N  I  S  S  I  S  K  F  A  S  K  S  *  R  R  I  W  I  *  S  *  Y  G  H  Y  Y  S  L  S  *  T  *  F  L  F  T  Y  F  N  V  *  M  K  Q  Q  N  I  I  F  L  F  P  F </second_frame>
            <third_frame>   N  I  N  N  F  S  F  *  N  N  N  K  M  G  L  K  K  T  S  S  S  K  Q  Q  T  A  A  L  K  Q  M  I  K  R  C  S  S  F  G  K  N  E  N  N  G  F  P  H  D  V  P  K  G  H  F  V  V  Y  V  G  E  N  R  S  R  Y  I  I  P  I  S  W  L  T  Y  P  Q  F  Q  N  L  L  Q  R  A  E  E  E  F  G  F  S  H  D  M  G  I  T  I  P  C  H  E  H  D  F  C  S  L  I  S  M  F  R  *  N  N  K  I  *  S  S  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108284" stop="107964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNKMGLKKTSSSKQQTAALKQMIKRCSSFGKNENNGFPHDVPKGHFVVYVGENRSRYIIPISWLTYPQFQNLLQRAEEEFGFSHDMGITIPCHEHDFCSLISMFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 44 chains have been computed
$ 
$ memory statistics:
$ 85832 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 9536 bytes was the average size of a spliced alignment
$ 12904 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1843 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 58 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:23:53
-->
