<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:17:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="12701" stop="13596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13001" g_stop="13322" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13001" e_stop="13322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ATTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTTAATTGTATAATTAAGTGTATAATATGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="12701" stop="13596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13001" g_stop="13291" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13001" e_stop="13291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ATTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTTAATTGTATAATTAAGTGTATAATATGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAATAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="12702" stop="13748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13002" g_stop="13448" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13002" e_stop="13448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATAT-ATTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTTAATTGTATAATTAAGTGTATAATATGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAATAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGTGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTATTTTATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537749" ref_strand="+" ref_description="SGN-E537749 [TUS-56-I6](-)">
      <seq>ttttctatctctaaaagctaactaatgcttgcagccatgacatgtttctatgcttttgagctgattcatgttttgagatgagtttctttcccatctctcaccggaccacccttttcgtgatattacacatgcacttcctcttttcttgttattattactcactctactttgtttaatacacaatgaggatttggaggttttcatctattgatgttcaatcaaacatgtctcatgtcgaactaagaaactgttgcttggcacggcacttcaggcgggtctgtgagatttgggaaatgttcctttttttggattgcatgcattactcaactaataggctgtttgacggttttgttcattaatatcttactaatatcttttttatagatgttctttatttattattttgtggttttacttgtagttgggagaactggtatgactgtacacaacacanaaacattaatgcttacattttattttggttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="17757" stop="82298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24486" g_stop="24506" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.619"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24507" i_stop="24825" i_length="319">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24826" g_stop="25298" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="489" r_length="468" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25299" i_stop="25374" i_length="76">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25375" g_stop="25384" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="499" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E537749" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24486" e_stop="24506"/>
          <exon e_start="24826" e_stop="25298"/>
          <exon e_start="25375" e_stop="25384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAACTCTTTATGATAGGTAACATTGATTTTGATTTTTGAGTCTTTTACCACTCTTTTTTAGTTCATGCCTGAAATAGCAATTGCTACTCAACTATGCTGATCAAATTCTAAATTGGTGTTGGGGGATCTGCAATAATCATTCTCAAGCTTCAAGATCATTTACCAGGTAAGATAAGATCTTTGTTTAGATTTTCATTTCACAAACCAGTCTATGGAACTTGCCATTTACCAGAAATTCCATTTCTCTAAATTTTTCAATGTTCATTAAAGTTAAACCTTACTCCGAGCATGAAGTTACATGTTTTGGTTAAAGCAGGAACTTAAATCTGATCCAGTGGAAGCTAACATCTGTCACGCTTTTCTAAGCTTTTGAGCTGATTCATGTTTTGAGTGGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTAATATTACTCACTCTTCTTTGTTTAATACACAATGATGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATATCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTATGAGATTTTGGGAAATGTTCCTTTTTTGGGATTGCATGCATTACTCAACTAATGGGCTGTTTGACGGTTTTGTTCATTAATATCTCACTAATATTTTTTTTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAATTGGGAGAACTGGTATGACTGTACACAACACA-AAACATTAACGCTTACATTTTATTTTGGTTTTATTGCAAGATGTTTATGTATATCACATTCCTGGTACTTCGTTTCCTGTAAAATACTTCCTTTACCTGTACCGTGTCTAGAAAAAAAATA</genome_strand>
        <mrna_strand>TTTTCTATCTCTAAAAGCTAA...............................................................................................................................................................................................................................................................................................................................CTAATGCTTGCAGCCATGACATGTTTCTATGCTTTTGAGCTGATTCATGTTTTGAGATGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTATTATTACTCACTCTACTTTGTTTAATACACAATGAGGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATGTCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTGTGAGA-TTTGGGAAATGTTCCTTTTTTTGGATTGCATGCATTACTCAACTAATAGGCTGTTTGACGGTTTTGTTCATTAATATCTTACTAATA-----TCTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAGTTGGGAGAACTGGTATGACTGTACACAACACANAAACATTAATGCTTACATTTTATTTTGGTTTTAAA............................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218628" ref_strand="+" ref_description="SGN-E218628 [cLEL-18-L3](-)">
      <seq>tatcggaaaatcattcagcatttatgagaggaatacgnccgacaaattagccgctaggatgttctacgtatcaggtggagatcggtttgatattgatgagataactaatgatttaaccgagctttcaatagatgaccctcaaattgaaggtgtgatatttgaggaagagtttgaagatttggaagaagatgtggaagatgtggaagagatagctaacttaattaaataacttgataattgacaatattttgttgttatgttaattttaagttatgaattaagttgagacaatctcttgttttttgttcaatagtatattttacacttttacttggtgtattgaatattgattagtaattatgaatatctaaattgtgggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35322" stop="32710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35022" g_stop="34948" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34947" i_stop="33320" i_length="1628">
            <donor d_prob="0.986" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33319" g_stop="33013" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="382" r_length="308" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="397"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E218628" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35022" e_stop="34948"/>
          <exon e_start="33319" e_stop="33013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGCAAAATCATTCGGTATCTATGAGAGGAATGCGGCCGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAGAAAATGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGATTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATAATTATAAGGGGGATAAGGAAATTGAAGCCAAGACACGTGAAATAAAAAAACCCTTATAATGAATGATGAAAAAAGCGATAGTATTGACTGTTTCTTGAAATTTACGAAACCAATTATTGATATGCTACGAAGTGCCGATATTGATGGTCCAAAATTACATCTCGTTTATGATATGTGGGACTCAATGATTGAGAAAGTCATCTTTGAGCATGAGGGAGAAATCTCATTTCCGGTCAATCAAATTTTTTTGATACTAGCTAGGTGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAATGGGCCAAGCAAATATTGGAATGTTGGTATGTCTATATTTTCTTCAATTATTTAGTTTAAATGGTGTTCTTTTCTTTTTATATAAGATCTTCTAATATATTTATTCTTTTTAATTTATTTTAGGTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACC-AGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</genome_strand>
        <mrna_strand>TATCGGAAAATCATTCAGCATTTATGAGAGGAATACGNCCGACAAATTAGCCGCTAGGATGTTCTACGTATCA-G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATCGGTTTGATATTGATGAGATAACTAATGATTTAACCGAGCTTTCAATAGATGACCCTCAAATTGAAGGTGTGATATTTGAGGAAGAGTTTGAAGATTTGGAAGAAGATGTGGAAGATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGAATTAAGTTGAGACAATCTCTTGTTTTTTGTTCAATAGTATATTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544249" ref_strand="+" ref_description="SGN-E544249 [TUS-66-H19](-)">
      <seq>atggctaggtggaacaaaagtaacacatctctacattgtatggcacattatttggttcccaaatattatcatgaatcatggcttgaaggagagaatggaattcgaaagctagctcccaatgaagatagtgaaatttcattgaatagagtcaagtgctttcaaaggtactttaaaaatttgaatgaaatgaaacaagcatcattggagtatggattcttttgtagcggaaatggctattttagtgagcctcatgtgataaacactatgatgtatgaagattctctttcttggtgggcaaatcatggggtctcggctccacttttgcaacaattagcttacaagttgcttactcaaccgacttcttcctcttgttgtgaaagaaattggagtacatattctttgattcacaatatcaagagaaataagttagcaacttcaagagccaaagattaagtgtttgtacattataatcttcgattgttgtctcacaagaaagagaaatatataaatgggcggccaagcaaatattgggatgttggtggagatcggtttgatattgatgagataactaatgatttaaccgagctttcaatagatgaccctcaaattgaaggtgtgatatttgaggaagagtttgaagatttggaagaagatgtggaagatgtggaagagatagctaacttaattaaataacttgataattgacaatattttgttgttatgttaattttaagttatgaattaagttgagacaatctcttgttttttgttcaatagtatattttacacttttacttggtgtattgaatattgattagtaattatgaatatctaaattgtgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="34250" stop="32710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33951" g_stop="33417" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33416" i_stop="33320" i_length="97">
            <donor d_prob="0.980" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33319" g_stop="33013" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="846" r_length="308" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="847" polyA_stop="857"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E544249" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33951" e_stop="33417"/>
          <exon e_start="33319" e_stop="33013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTAGGTGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAAT--G-GGCCAAGCAAATATTGGAATGTTGGTATGTCTATATTTTCTTCAATTATTTAGTTTAAATGGTGTTCTTTTCTTTTTATATAAGATCTTCTAATATATTTATTCTTTTTAATTTATTTTAGGTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACC-AGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</genome_strand>
        <mrna_strand>ATGGCTAGGTGGAACAAAAGTAACACATCTCTACATTGTATGGCACATTATTTGGTTCCCAAATATTATCATGAATCATGGCTTGAAGGAGAGAATGGAATTCGAAAGCTAGCTCCCAATGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAAATTTGAATGAAATGAAACAAGCATCATTGGAGTATGGATTCTTTTGTAGCGGAAATGGCTATTTTAGTGAGCCTCATGTGATAAACACTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCCACTTTTGCAACAATTAGCTTACAAGTTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAAGTTAGCAACTTCAAGAGCCAAAGATTAAGTGTTTGTACATTATAATCTTCGATTGTTGTCTCACAAGAAAGAGAAATATATAAATGGGCGGCCAAGCAAATATTGGGATGTTG.................................................................................................GTGGAGATCGGTTTGATATTGATGAGATAACTAATGATTTAACCGAGCTTTCAATAGATGACCCTCAAATTGAAGGTGTGATATTTGAGGAAGAGTTTGAAGATTTGGAAGAAGATGTGGAAGATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGAATTAAGTTGAGACAATCTCTTGTTTTTTGTTCAATAGTATATTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544247" ref_strand="+" ref_description="SGN-E544247 [TUS-66-H18](-)">
      <seq>gtaacacatctctacattgtatggcacattatttggttcccaaatattatcatgaatcatgcctgaaggagagaatggaatccgaaagctagctcccaatgaagatagtgaaatttcattgaatagagtcaagtgctttcaaaggtactttaaaaatttgaatgaaatgaaacaagcatcattggagtatggattcttttgtagcggaaatggctattttagtgagcctcatgtgataaacactatgatgtatgaagattctctttcttggtgggcaaatcatggggtctcggctccacttttgcaacaattagcttacaagttgcttactcaaccgacttcttcctcttgttgtgaaagaaattggagtacatattctttgattcacaatatcaagagaaataagttagcaacttcaagagccaaagattaagtgtttgtacattataatcttcgattgttgtctcacaagaaagagaaatatataaatgggcggccaagcaaatattgggatgttggtggagatcggtttgatattgatgagataactaatgatttaaccgagctttcaatagatgaccctcaaattgaaggtgtgatatttgaggaagagtttgaagatttggaagaagatgtggaagatgtggaagagatagctaacttaattaaataacttgataattgacaatattttgttgttatgttaattttaagttatgaattaagttgagacaatctcttgttttttgttcaatagtatattttacacttttacttggtgtattgaatattgattagtaattatgaatatctaaattgtgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="34232" stop="32710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33932" g_stop="33417" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33416" i_stop="33320" i_length="97">
            <donor d_prob="0.980" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33319" g_stop="33013" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="826" r_length="308" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="827" polyA_stop="837"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E544247" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33932" e_stop="33417"/>
          <exon e_start="33319" e_stop="33013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAAT--G-GGCCAAGCAAATATTGGAATGTTGGTATGTCTATATTTTCTTCAATTATTTAGTTTAAATGGTGTTCTTTTCTTTTTATATAAGATCTTCTAATATATTTATTCTTTTTAATTTATTTTAGGTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACC-AGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</genome_strand>
        <mrna_strand>GTAACACATCTCTACATTGTATGGCACATTATTTGGTTCCCAAATATTATCATGAATCAT-GCCTGAAGGAGAGAATGGAATCCGAAAGCTAGCTCCCAATGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAAATTTGAATGAAATGAAACAAGCATCATTGGAGTATGGATTCTTTTGTAGCGGAAATGGCTATTTTAGTGAGCCTCATGTGATAAACACTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCCACTTTTGCAACAATTAGCTTACAAGTTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAAGTTAGCAACTTCAAGAGCCAAAGATTAAGTGTTTGTACATTATAATCTTCGATTGTTGTCTCACAAGAAAGAGAAATATATAAATGGGCGGCCAAGCAAATATTGGGATGTTG.................................................................................................GTGGAGATCGGTTTGATATTGATGAGATAACTAATGATTTAACCGAGCTTTCAATAGATGACCCTCAAATTGAAGGTGTGATATTTGAGGAAGAGTTTGAAGATTTGGAAGAAGATGTGGAAGATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGAATTAAGTTGAGACAATCTCTTGTTTTTTGTTCAATAGTATATTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263897" ref_strand="+" ref_description="SGN-E263897 [cLEG-64-A3]">
      <seq>ttcgagtagtggagctatcggaaaatcattcagcatttatgagaggaatacgaccgacaaattagccgctaggatgttctacgtatcaggtggaacaaaagtaacacatctctacattgtatggcacattatttggttcccaaatattatcatgaatcatggcttgaaggagagaatggaattcgaaagctagctcccaatgaagatagtgaaatttcattgaatagagtcaagtgctttcaaaggtactttaaaaatttgaatgaaatgaaacaagcatcattggagtatggattcttttgtagcggaaatggctattttagtgagcctcatgtgataaacactatgatgtatgaagattctctttcttggtgggcaaatcatggggtctcggctccacttttgcaacaattagcttacaagttgcttactcaaccgacttcttcctcttgttgtgaaagaaattggagtacatattctttgattcacaatatcaagagaaataagttagcaacttcaagagccaaagattaagtgtttgtacattataatcttcgattgttgtctcncnagaaagagaaatatataaatgggcggccaagcaaatattgggatgttggtggagatcggtttgatattgatgagataactaatgatttaaccgagctttcaatagatgaccctcaaattgaaggtgtgatattttgaggagagtttgaagatttggaagaagatgtggaagatgtggaagagatagcntacttaattaaataacttgataattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35337" stop="32854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35037" g_stop="34948" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34947" i_stop="33943" i_length="1005">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33942" g_stop="33417" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="619" r_length="529" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33416" i_stop="33320" i_length="97">
            <donor d_prob="0.980" d_score="0.83"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33319" g_stop="33154" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="786" r_length="167" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E263897" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35037" e_stop="34948"/>
          <exon e_start="33942" e_stop="33417"/>
          <exon e_start="33319" e_stop="33154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTAGTGGAGCTACCGCAAAATCATTCGGTATCTATGAGAGGAATGCGGCCGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAGAAAATGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGATTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATAATTATAAGGGGGATAAGGAAATTGAAGCCAAGACACGTGAAATAAAAAAACCCTTATAATGAATGATGAAAAAAGCGATAGTATTGACTGTTTCTTGAAATTTACGAAACCAATTATTGATATGCTACGAAGTGCCGATATTGATGGTCCAAAATTACATCTCGTTTATGATATGTGGGACTCAATGATTGAGAAAGTCATCTTTGAGCATGAGGGAGAAATCTCATTTCCGGTCAATCAAATTTTTTTGATACTAGCTAGGTGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAAT--G-GGCCAAGCAAATATTGGAATGTTGGTATGTCTATATTTTCTTCAATTATTTAGTTTAAATGGTGTTCTTTTCTTTTTATATAAGATCTTCTAATATATTTATTCTTTTTAATTTATTTTAGGTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACC-AGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGA</genome_strand>
        <mrna_strand>TTCGAGTAGTGGAGCTATCGGAAAATCATTCAGCATTTATGAGAGGAATACGACCGACAAATTAGCCGCTAGGATGTTCTACGTATCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACAAAAGTAACACATCTCTACATTGTATGGCACATTATTTGGTTCCCAAATATTATCATGAATCATGGCTTGAAGGAGAGAATGGAATTCGAAAGCTAGCTCCCAATGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAAATTTGAATGAAATGAAACAAGCATCATTGGAGTATGGATTCTTTTGTAGCGGAAATGGCTATTTTAGTGAGCCTCATGTGATAAACACTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCCACTTTTGCAACAATTAGCTTACAAGTTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAAGTTAGCAACTTCAAGAGCCAAAGATTAAGTGTTTGTACATTATAATCTTCGATTGTTGTCTCNCNAGAAAGAGAAATATATAAATGGGCGGCCAAGCAAATATTGGGATGTTG.................................................................................................GTGGAGATCGGTTTGATATTGATGAGATAACTAATGATTTAACCGAGCTTTCAATAGATGACCCTCAAATTGAAGGTGTGATATTTTGAGGAGAGTTTGAAGATTTGGAAGAAGATGTGGAAGATGTGGAAGAGATAGCNTACTTAATTAAATAACTTGATAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263735" ref_strand="+" ref_description="SGN-E263735 [cLEG-60-D23]">
      <seq>ttcgagtagtggagctatcggaaaatcattcagcatttatgagaggaatacgaccgacaaattagccgctaggatgttctacgtatcaggtggaacaaaagtaacacatctctacattgtatggcacattatttggttcccaaatattatcatgaatcatggcttgaaggagagaatggaattcgaaagctagctcccaatgaagatagtgaaatttcattgaatagagtcaagtgctttcaaaggtactttaaaaatttgaatgaaatgaaacaagcatcattggagtatggattcttttgtagcggaaatggctattttagtgagcctcatgtgataaacactatgatgtatgaagattctctttcttggtgggcaaatcatggggtctcggctccacttttgcaaaattagcttacaaattgcttactcaaccgacttcttcctcttgttgtgaaagaaattggagtacatattctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35337" stop="33249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35037" g_stop="34948" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34947" i_stop="33943" i_length="1005">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33942" g_stop="33549" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="483" r_length="393" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E263735" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35037" e_stop="34948"/>
          <exon e_start="33942" e_stop="33549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTAGTGGAGCTACCGCAAAATCATTCGGTATCTATGAGAGGAATGCGGCCGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAGAAAATGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGATTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATAATTATAAGGGGGATAAGGAAATTGAAGCCAAGACACGTGAAATAAAAAAACCCTTATAATGAATGATGAAAAAAGCGATAGTATTGACTGTTTCTTGAAATTTACGAAACCAATTATTGATATGCTACGAAGTGCCGATATTGATGGTCCAAAATTACATCTCGTTTATGATATGTGGGACTCAATGATTGAGAAAGTCATCTTTGAGCATGAGGGAGAAATCTCATTTCCGGTCAATCAAATTTTTTTGATACTAGCTAGGTGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGA</genome_strand>
        <mrna_strand>TTCGAGTAGTGGAGCTATCGGAAAATCATTCAGCATTTATGAGAGGAATACGACCGACAAATTAGCCGCTAGGATGTTCTACGTATCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACAAAAGTAACACATCTCTACATTGTATGGCACATTATTTGGTTCCCAAATATTATCATGAATCATGGCTTGAAGGAGAGAATGGAATTCGAAAGCTAGCTCCCAATGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAAATTTGAATGAAATGAAACAAGCATCATTGGAGTATGGATTCTTTTGTAGCGGAAATGGCTATTTTAGTGAGCCTCATGTGATAAACACTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCCACTTTTGCAA-AATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544248" ref_strand="+" ref_description="SGN-E544248 [TUS-66-H18]">
      <seq>gacaaattagccgctaggatgttctacgtatcaggtttatcattcaactttgccaactctccttattttaaaaaatattctaagtttctagccgaaaattccattcccagttatattcccccatcatataatagattgaggtcaactcttttagctcaagaaaaaacacatattgatagaaagttgcaaccaataaaaggtacatgaaaaaagaaaggattgtcgatttgttcggatggatggtccgatactaaaagacgacctttgatcaatataatgacatcatctagtggaggcccaatgtttttgaattcaatcaattctagtggaatcgtaaaaattgtaggttcaaacaatgttgtttgagttattacggataatgcaagtaatatgaaacttgccggtactatagtggagcaaaaatatcctcatatattttgaactccttgcgttgttcattgtttgaatctagctttgaaaagtatgtgccaactttcgaaaaaatcacctcactttactaattgtaaatgaattttagagttacttagtgaagtgagcaatttaaagaattttgttgtgaaccatgacatggcacatgcactttttcaaaaacattcgaatttgtgtttgttgaaggttggtgcaacaagattttgcctcacacatcattatgaccacctgaatttgcaaagtaaaatcttctttggagaaatggtcatggatgatgaatggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35282" stop="33904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34982" g_stop="34654" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34603" g_stop="34205" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="736" r_length="408" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E544248" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34982" e_stop="34654"/>
          <exon e_start="34603" e_stop="34205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAG--------AAAA-TGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGA-TTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATA</genome_strand>
        <mrna_strand>GACAAATTAGCCGCTAGGATGTTCTACGTATCAGGTTTATCATTCAACTTTGCCAACTCTCCTTATTTT-AAAAAATATTCTAAGTTTCTAGCCGAAAATTCCATTCCCAGTTATATTCCCCCATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGGTACATGAAAAAAGAAAGGATTGTCGATTTGTTCGGATGGATGGTCCGATACTAAAAGACGACCTTTGATCAATATAATGACATCATCTAGTGGAGGCCCAATGTTTTTGAATTCAATCAATTCTAGTG..................................................GAATCGTAAAAATTGTAGGTTCAAACAATGTTGTTTGAGTTATTACGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGAACTCCTTGCGTTGTTCATTGTTTGAATCTAGCTTTGAAAAGTATGTGCCAACTTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAGTGAGCAATTTAAAGAATTTTGTTGTGAACCATGACATGGCACATGCACTTTTTCAAAAACATTCGAATTTGTGTTTGTTGAAGGTTGGTGCAACAAGATTTTGCCTCACACATCATTATGACCACCTGAATTTGCAAAGTAAAATCTTCTTTGGAG-AAATGGTCATGGATGATGAATGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544250" ref_strand="+" ref_description="SGN-E544250 [TUS-66-H19]">
      <seq>gacaaattagccgctaggatgttctacgtatcaggtttatcattcaactttgccaactctccttattttaaaaaatattctaagtttctagccgaaaattccattcccagttatattcccccatcatataatagattgaggtcaactcttttagctcaagaaaaaacacatattgatagaaagttgcaaccaataaaaggtacatgaaaaaagaaaggattgtcgatttgttcggatggatggtccgatactaaaagacgacctttgatcaatataatgacatcatctagtggaggcccaatgtttttgaattcaatcaattctagtggaatcgtaaaaattgtaggttcaaacaatgttgtttgagttattacggataatgcaagtaatatgaaacttgccggtactatagtggagcaaaaatatcctcatatattttgaactccttgcgttgttcattgtttgaatctagctttgaaaagtatgtgccaactttcgaaaaaatcacctcactttactaattgtaaatgaattttagagttacttagtgaagtgagcaatttaaagaattttgttgtgaaccatgacatggcacatgcactttttcaaaaacattcgaatttgtgtttgttgaaggttggtgcaacaagattttgcctcacacatcattatgaccacctgaatttgcaaagtaaaatcttctttggagaaatggtcatggatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35282" stop="33913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34982" g_stop="34654" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34603" g_stop="34213" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="728" r_length="400" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E544250" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34982" e_stop="34654"/>
          <exon e_start="34603" e_stop="34213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAG--------AAAA-TGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGA-TTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGA</genome_strand>
        <mrna_strand>GACAAATTAGCCGCTAGGATGTTCTACGTATCAGGTTTATCATTCAACTTTGCCAACTCTCCTTATTTT-AAAAAATATTCTAAGTTTCTAGCCGAAAATTCCATTCCCAGTTATATTCCCCCATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGGTACATGAAAAAAGAAAGGATTGTCGATTTGTTCGGATGGATGGTCCGATACTAAAAGACGACCTTTGATCAATATAATGACATCATCTAGTGGAGGCCCAATGTTTTTGAATTCAATCAATTCTAGTG..................................................GAATCGTAAAAATTGTAGGTTCAAACAATGTTGTTTGAGTTATTACGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGAACTCCTTGCGTTGTTCATTGTTTGAATCTAGCTTTGAAAAGTATGTGCCAACTTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAGTGAGCAATTTAAAGAATTTTGTTGTGAACCATGACATGGCACATGCACTTTTTCAAAAACATTCGAATTTGTGTTTGTTGAAGGTTGGTGCAACAAGATTTTGCCTCACACATCATTATGACCACCTGAATTTGCAAAGTAAAATCTTCTTTGGAG-AAATGGTCATGGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307408" ref_strand="+" ref_description="SGN-E307408 [cLEY-12-G10]">
      <seq>acaaattagccgctaggatgttctacgtatcaggtttatcattcaactttgccaactctccttattttaaaaaatattctaagtttctagccgaaaattccattcccagttatattcccccatcatataatagattgaggtcaactcttttagctcaagaaaaaacacatattgatagaaagttgcaaccaataaaaggtacatgaaaaaagaaaggattgtcgatttgttcggatggatggtccgatactaaaagacgacctttgatcaatataatgacatcatctagtggaggcccaatgtttttgaattcaatcaattctagtggaatcgtaaaaattgtaggttcaaacaatgttgtttgagttattacggataatgcaagtaatatgaaacttgccggtactatagtggagcaaaaatatcctcatatattttgaactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="35281" stop="34197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34981" g_stop="34654" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.46"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34603" g_stop="34494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="446" r_length="119" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E307408" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34981" e_stop="34654"/>
          <exon e_start="34603" e_stop="34494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTGGAATCATAAAAGATGGTGATATATTGCTAACTTATTTATTGAAGCAATAG--------AAAA-TGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATT</genome_strand>
        <mrna_strand>ACAAATTAGCCGCTAGGATGTTCTACGTATCAGGTTTATCATTCAACTTTGCCAACTCTCCTTATTTT-AAAAAATATTCTAAGTTTCTAGCCGAAAATTCCATTCCCAGTTATATTCCCCCATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGGTACATGAAAAAAGAAAGGATTGTCGATTTGTTCGGATGGATGGTCCGATACTAAAAGACGACCTTTGATCAATATAATGACATCATCTAGTGGAGGCCCAATGTTTTTGAATTCAATCAATTCTAGTG..................................................GAATCGTAAAAATTGTAGGTTCAAACAATGTTGTTTGAGTTATTACGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGAACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="-" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>gtatgaaattttaaaaaatagggaaaagggtctgatatacctctcaactttgtcatttagagctgatatatccctcgtaataaaagtggttcatatatgcccttatcgttatacaaacggctcacatatacccctgccgttagaaaatggctcacatatacccttcatttaacgaaagttaaaaaattagttttaaatttatatttgttacttctaatttttttttaaaaaaaatatttagggatatatatgattcttctatcaaagttcaaggtatattttaattttttcatacaaaaattattttttgacttcttttattataataatttgagtttcttattcttattttgtttttttctttcattccttagtttaaataaaaaaaattcaaatattttttttgtgtgtattgtaatttaatttcgtattcgaagaaaaaattggtcatctacaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="45393" stop="43751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45100" g_stop="44945" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44944" i_stop="44357" i_length="588">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44356" g_stop="44051" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="460" r_length="303" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45100" e_stop="44945"/>
          <exon e_start="44356" e_stop="44051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTATTTTAAAATAT-GGAAAAAGGGTTTAATATATCCCTCAACTTTGTAATGTAGAGCTGATACACCCCTCGTTATAAAAGTGGTTCATATATACCCTAACCGTTATACAAACGGCTCATATATACCCCTGCCGTTACAAAATGGCTCACATATACCCTTCATTTAACGGAATTTTAAATAATTAGTTTTAAATTTATATTTATTACTTATAATTTTTTAAAAAAAATTATTTAGTGGTATATATGATTCTTCTATAAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTGACTTCTTTAATCATAATTATTTGAATTTCTTATTCTTATTATATTTTTTTCTTTCATTCCTTAATTTAAAGAGAAAAAACTAAACTATTTTTTTGTGTATATTGTAATTTAATTACGTATTCAGAAAAAATTTTGGTCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAACCAAAAAAGTCAAAAAAAAATATGTTTGACAAAGATTAAATTTACTCATATGGGATATTTTTTAGAAAAAAATAATAAAAATTTAGATTGAAAATTATTATTTTTTCATGGGAAAAGAGTCTGATATACCCTTCAACTTTGTCATTTGCAGCTGATATACCCCTCGTTATAAAAGTGGCTCATATATGCCCTTACCGTTATACAAACGGCTCATATACCCTTCATTTGACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTTACTTCTAATTTTTTTTAAAAAAAATTATTTAGGGGTATATATGATTATTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGAC-TCTTTTATTATAATTATTTGAGTTTCTTATTCTTATTTTATTTTTTTCTTTCATTCCTTAGTTTAAAGAGAAAAAAATTAAAATATTTTTTGTGTGTGTATTATAATTTAATTTCGTATTCGAAGAAAAAATTTGGTCATCTACAATAA</genome_strand>
        <mrna_strand>GTATGAAATTTTAAAAAATAGGGAAAAGGGTCTGATATACCTCTCAACTTTGTCATTTAGAGCTGATATATCCCTCGTAATAAAAGTGGTTCATATATGCCCTTATCGTTATACAAACGGCTCACATATACCCCTGCCGTTAGAAAATGGCTCACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCTTCATTTAACGAAAGTTAAAAAATTAGTTTTAAATTTATATTT-GTTACTTCTAATTTTTTTTTAAAAAAAATATTTAGGGATATATATGATTCTTCTATCAAAGTTCAAGGTATATTTTAA-TTTTTTCATACAAAAATTATTTTTTGACTTCTTTTATTATAATAATTTGAGTTTCTTATTCTTATTTTGTTTTTTTCTTTCATTCCTTAGTTTAAATA-AAAAAAATTCAAATATTTTTTTTGTGTGTATTGTAATTTAATTTCGTATTCGAAGAAAAAA-TTGGTCATCTACAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691566" ref_strand="+" ref_description="SGN-E691566 [LH_Ea06H04]">
      <seq>ctgttaaagatggccgatcaagatcaattttcccgacttggcatttttccatccataaaatctcgacaacttgagtgaattggaattcacgcatgctgtcgatggccgatcaggatcaagaattctccactggattgctgtctctgtgacgatttcgatcaaaaccctaaaccccaaatcgtagaatccccgatgattcaggaaagctggtgcttgctgccatgcctggttttgaagcttttgaactaatcatgtttgggcattgcagagttcagttgttttgtcactatatcatccctttggtgaaactacatgaccttttacttttcttgttcttattactcactcatgtaaaattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="72100" stop="76744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72398" g_stop="72598" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72599" i_stop="76275" i_length="3677">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76276" g_stop="76444" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="369" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E691566" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72398" e_stop="72598"/>
          <exon e_start="76276" e_stop="76444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGACGATGGCCGATCAAGATCAATTTTCCCATCTTGGTATTCTTCCATCCATAAAATCTCGACAACTTGAGTGAATTGAAATTCACGCATGCTGTCGATGGCCGATCAGGATCAAGAATTCTCCACTGGATTGCTGTCTCAGTGACGATTTCGATCAAAACCCTAAACCCCAAATCGTAGAATCCTCGATGATTCAGGTATCCTTTTCTCTATTCAAAAAGAAACAAGGTATCTTTTAATTCTTGCATACATTCCTTCTAAGAAAAAAGCCAAGAAATTGTCGTCTTTTTTAAGTTAAATTGGATCTTCAAGAAATCTTTTCTTCTTCAAAAAAAAAGTTATGTTATTATTCTCGCCGTGTATGTTAAGTTTGTTCAAGAATCTGTTTTTACTTTTCTAAGGGTGAGGCTATTTGGAGTTCAATATCATTATGTTTTCACAAGGGTTGTTTAGGAGTGTTTCAACAGCTCTATGCTGGTGCCACAAAGTCATTCTTTATGGAAAGACGTGGAGTTGTTCTTGAACCCACTCGCACAACTCTAATTATAAGAAGTTGTGATTAGTAGTATTTTGAATTAAGTAGTTTAATTATTAGACAGACAGACTTTGTAAACGCCCTCAATGACCATCTTCCTTTACATGGTCTAGACTTTTTGACTTTGATTGTTTGTTATTGTTTTCATTTGAGAATCAGTAAAAGTCTGCTGAGAACGTCATAGTCAAGTGACTAACGGAGGCAAGTCGTGCCTTCATGCAGTTTTAATCAATTAGACTGATTGCACCTGTGAATTTGTATGTGGCTTGCACGCAAAGGCAGTGACCGGTGGGACTTGTGCGTATTCTAAATTATTTTTTCCGCGTGTATTTACAAAAAGTTTTCATTTGAAAGCTATAAAATGACACCGCCTATCTTCACACGCTACGTCTTCTGATTACAAATTACGCTACTGGTGCAGTATATAACTTCATACGCTACTGACGCGCATTGTAGAACTTCATATGCTATTTTCCTTTACATGGTCTAAGACTGTTTGACTTTGACTGTTTCATAAAATGGAAAAGTGTGCCACCTAAGAAATAGGGAATTATTTGATTCGTCTTTTTTGATTTTGTAAATGTTTTGAGGATTAGTAGAGGTGGGCTGCTGAGAACATCACACACTTTCAATTGTTTAGACTAATTCCACCTGTGAATTTGTGTGTTGTTGCACAAAAGGCATTGACCAGTGAGGCTCTTCAACGAATTCTTATGTTCCTCTGTTTGCTGCTTCCTTGTAGGGCTGTTCTTGTGTTTGTTGTTCTTATAAAGTAGTGTGTTCCTAGTTTGAAATTTAACCCAGTTTCCACTTTCCACTCTCCACCAGGTATCTGTTGCAATAGGAATTGGACCTGCTATGTAAATGTGGTATCAGTTCCTTTCCCACCCCTCACTTAACCACCCTTTTCATGATATTACTCATGCACTCCCTCTTTTGTTATTTTTTGTACTCACTCTACTCAGTTTTATACACAATGAAGATTAGAGGTTTTCATCTGTCGATGTTCAATCAAACATGTTCCTTGTCCAGCTAAAGAACTGTTGATTTGGCACGGCACTTCATATTTTGGTTCTATGAGATTTTTCGAGAAATTTCATTTTTTGGTCTTCCTTTTCTGTCTCATAGGCAAACTGATGCTTGCAGCCATGCTGGGTTTCAAAGCTTTTCAGCAAATCATTTTTGGGCGTCGCAGAGTTCAATTTTTTTTGCTGGTAAATCACCCTTTAGTGAAACTACAGGATCTTCTACTTTTCTTGTTCTTTTATTACTCTCTCTTGTATAACTCAAAAAAAGCAACTTAGCATGTTCTCTTTGAGCTGAACAACTGTTGATTGGCATGGCAGCTCAGGCGGGTATATGAGATTTAGGAGAAAGTTACATTTTATGGTGTGTTTTCTCTGTCTCATAAGGCTTAATGATGCTTGCAGCCATGACAGACCGATTTTTGCAGTCATTCTGGGTGTCAAAGATTTTGAGCTAATCATGTTTGGTTGTTGCAAGTTCAATATTTTTGTCACTAAATCATCCTTTTTGTGAAACTACACGACCATCTTCTTTCTTGTTCTTATTACTCTCTCCTGTATAACTCAAACAAGGCAATGAAAATCTCTCTTGAGCTGAAATACTGTTGCTTGGCATGGAACCTCAGGTGGGAATATGAGATTTAGGAGAAAGTTCCATTTCATGGTGCATCTTCTCTGTATCATGATGCGTGTAGCCACGAACAGATTCCAAAGCTTTTAAGTTGGTTCGTGTTTCGGCTTAGAAAAATTCAGTTTCCTTCCCACCCTCCCCAAACCGCCCTTTTCATGAAATTAAACATGACCTTCCTCTTCTTTTTTTTTTTATTACTCTCGCTGCTCCGTTTATTAAAACATGAGGATGTGGAGGTTTTGCCTTCTGGGGAGTTCAATATTTCTTGTTGCTCTTCAGGTGGGTTCAGTGTTACGAAAGGCGCTCGCCTCGTCGCCAAAGGCGAGAGGCGAGGCGAGGCGAGGGTGGCTCGCCATTCTCTGGCGAGGCGAGGCGAGGAGAAAAAGGCGAGCCCCTGGCGAACTATGGCGATGAAATGGCGAGCGAAAGGCGCCGCCTTTTTGATTAAAAAATTTTGACTTAATAATATTAGTCAAAATTAGGGTTTTTTTTTTACTTTTGAAAATTTCTGAAATCCTCCACATCGCGACTCTCTCTCTCTCTCTCTATCGATCGATTGACTTTTCTCTTCTCATCCATCGCATCGCTGCTCCCTCGCTGTCCCTCGCTGTCGCGCATCTCTGCTCCCTCGCTGTCGCGTCTCTGCTCCCTCGCTGTTGCGTCTCTTCTCCCTCGCCGACGACCCTCGCGACTCTCACTCTCTGTTTTCAGGTAATGTTTTCTCATTTCTGATTTCTCTCTCCTTCTTCTGTTCTTATTTTTTCTGTTCTTCTTCATTTTTATTTTTATTTTTGGTAAGCTGCAGTCAGGCAGTGCTTACTGCTTTGTGTAACTGTAAAGTGTTAATTTTTTTTAAAAAATTCTTTGCTAATATGTGTTATTGCTATTAAGACTTTGGATAAAATATGCAATTAAATATTTTTAATTTTTGGTATTAATTGGCGCCTTTATTCAAAAAGGCAAGCGCCTCGCCGCGTGGCGAGGCAGGCCCTTGTCGCCTTTTGTCGCCTCTCGCCGTCCACAACACTGGGTGGGTTTATGAGATTGTAATTAAATTTCCATCTCATGGTGTTTCTTCTCCATCTCACAGGCCTGATTGATGCTTGTAGCCACGACAGATTTCAATTCTTCTGAGCTCATCATGTTTTGGATTTATAGAGTTCAGTTTTGTTTCTTTCGCCAAACCACCATTTTGGTGAAATCACACACGACCTTCCCTTTTTCTTATTTTTAGTGCTCTTTCCAATATAACTCAAAAAGGGCAATCGTTCACTCTAGAGCTGAAAAACTGTTTTTTGGCATGGCATCTCATGTGGGTCTCTGAGATTTTTGAAGAAGTACCATTTCTTGGTGTTTTTTCTCTGTCTCTCAAGGCTAACTAATGCTTGCAGCCATGACATGTTTCTAAGCTTTTGGGCTGATTCGTGTTTTGTGTTGAGTTTCTTACCCATCCCTCGGTCGAACCACCCTTTTTGTGATATTACACAAGCACTTTCTCTTTTCTTGTTCTTTATACTCTGCTCCATTTATACACAATGAGGTTTTGGAGGTTTTCATCCATCGATGTTCAATTAAACATGTCTCATGTCAAACTAAAGAACTTCTGCTTGGCACGACACTTCAGGTGGGTCATGAGATTTTGGGAAATGTTCCACTTATTGGTCTTTCTTCTCTGTCTCCTAGGGAAGCTGGTGCTTGCTGCCATGCCTGGGTTTCGAAGCTTTTGAGCTAATCATGTTTGGGCATTGCAAAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACCTTTCTTGTTCTTATTACTCACTCATGTAAAATTCAAAAAAAAAA</genome_strand>
        <mrna_strand>CTGTTAAAGATGGCCGATCAAGATCAATTTTCCCGACTTGGCATTTTTCCATCCATAAAATCTCGACAACTTGAGTGAATTGGAATTCACGCATGCTGTCGATGGCCGATCAGGATCAAGAATTCTCCACTGGATTGCTGTCTCTGTGACGATTTCGATCAAAACCCTAAACCCCAAATCGTAGAATCCCCGATGATTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGTGCTTGCTGCCATGCCT-GGTTTTGAAGCTTTTGAACTAATCATGTTTGGGCATTGCAGAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACTTTTCTTGTTCTTATTACTCACTCATGTAAAATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546357" ref_strand="+" ref_description="SGN-E546357 [TUS-69-K22](-)">
      <seq>gactgatgatgcttgtagccacgacagatttcaattcttctgagctcatcatgttttggatttatagagttcagttttgtttctttcgccaaaccaccattttggtgaaatcacacacgacctttcctttttcttatttttagtgctctttccaatataactcaaaagggcaatcaaacctgttcactcttgagctgaaaaactgttttttggcatggcatctcatgtgggtctctgagatttttgaagaagtaccatttcttggtgttttttctgtctctcaaggctaactaatgcgtgcagccatgacatgtttctaagcttttgggctgattcgtgttttgggttgagtttcttacttatccctcagtcgaaccaccctttttgtgatattacacatgcactttctcttttcttgttctttatactcactctgctccgtttatacacaatgaggttttggaggttttcatccatcgatgttcaattaaacatgtctcatgtcaaactaaagaacttctgcttggcacgacacttcaggtgggtctatgagattttgggaaatgttccacttattggtctttcttctctgtctcctaggaaagctggtgcttgctgccatgcctggttttgaagcttttgaactaatcatgtttgggcattgcaaagttcagttgttttgtcactatatcatccctttggtgaaactacatgaccttttacttttcttgttcttcttactcactcatgtaaaattcaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="75383" stop="76754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75683" g_stop="76448" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E546357" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75683" e_stop="76448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGATTGATGCTTGTAGCCACGACAGATTTCAATTCTTCTGAGCTCATCATGTTTTGGATTTATAGAGTTCAGTTTTGTTTCTTTCGCCAAACCACCATTTTGGTGAAATCACACACGACCTTCCCTTTTTCTTATTTTTAGTGCTCTTTCCAATATAACTCAAAAAGG---GC-AATC-GTTCACTCTAGAGCTGAAAAACTGTTTTTTGGCATGGCATCTCATGTGGGTCTCTGAGATTTTTGAAGAAGTACCATTTCTTGGTGTTTTTTCTCTGTCTCTCAAGGCTAACTAATGCTTGCAGCCATGACATGTTTCTAAGCTTTTGGGCTGATTCGTGTTTTGTGTTGAGTTTCTTACCCATCCCTCGGTCGAACCACCCTTTTTGTGATATTACACAAGCACTTTCTCTTTTCTTGTTC-TT-TA-T-ACTCTGCTCCATTTATACACAATGAGGTTTTGGAGGTTTTCATCCATCGATGTTCAATTAAACATGTCTCATGTCAAACTAAAGAACTTCTGCTTGGCACGACACTTCAGGTGGGTC-ATGAGATTTTGGGAAATGTTCCACTTATTGGTCTTTCTTCTCTGTCTCCTAGGGAAGCTGGTGCTTGCTGCCATGCCTGGGTTTCGAAGCTTTTGAGCTAATCATGTTTGGGCATTGCAAAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACCTTTCTTGTTCTTATTACTCACTCATGTAAAATTCAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GACTGAT-GATGCTTGTAGCCACGACAGATTTCAATTCTTCTGAGCTCATCATGTTTTGGATTTATAGAGTTCAGTTTTGTTTCTTTCGCCAAACCACCATTTTGGTGAAATCACACACGACCTTTCCTTTTTCTTATTTTTAGTGCTCTTTCCAATATAACTCAAAAGGGCAATCAAACCTGTTCACTCTTGAGCTGAAAAACTGTTTTTTGGCATGGCATCTCATGTGGGTCTCTGAGATTTTTGAAGAAGTACCATTTCTTGGTG-TTTTT-TCTGTCTCTCAAGGCTAACTAATGCGTGCAGCCATGACATGTTTCTAAGCTTTTGGGCTGATTCGTGTTTTGGGTTGAGTTTCTTACTTATCCCTCAGTCGAACCACCCTTTTTGTGATATTACACATGCACTTTCTCTTTTCTTGTTCTTTATACTCACTCTGCTCCGTTTATACACAATGAGGTTTTGGAGGTTTTCATCCATCGATGTTCAATTAAACATGTCTCATGTCAAACTAAAGAACTTCTGCTTGGCACGACACTTCAGGTGGGTCTATGAGATTTTGGGAAATGTTCCACTTATTGGTCTTTCTTCTCTGTCTCCTAGGAAAGCTGGTGCTTGCTGCCATGCCT-GGTTTTGAAGCTTTTGAACTAATCATGTTTGGGCATTGCAAAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACTTTTCTTGTTCTTCTTACTCACTCATGTAAAATTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370628" ref_strand="+" ref_description="SGN-E370628 [TUS-27-E14](-)">
      <seq>gcctgaacatcagaaatttgagctcaagcggaatcccctcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagagctttgtccatcgagaatccaaaagcggattgatggaaagatcaatgatattatcaagaaaggttggcccattctcaaagaagtttaggtatacatctcaaggttatatgagatcgtgcagaccttcgttaatgtgtagaaactgcgagtttcgtttgcttaagtaatgtcttgcagatgacagaataccttcatccgaatttatcctacatcatagattctgaaagtctgaatagcgagcagagacctttttacagagatcaatcaaaatttgtttgtacaatcagaataggttgattggactagacttagctgctgcagctggtggaataaatctaccggagcttccgctttccctttttttgcagggattaatcaaaattttttgtactatcttaatgttctgtataggtaataggctgattgcaccaaaactgaacattattgtgatgtaaggctgtgggaccttaaaatcatgttgttgtagcactttataattctatgtatgcttggctacccctttttcatgttgtagtagttgcaatttgcaaatactatttagctgattggatttttctttttataaatttggccacttctcggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="92530" stop="91213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92226" g_stop="91505" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="735" r_length="722" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E370628" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92226" e_stop="91505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGGAGGGTTTAA</genome_strand>
        <mrna_strand>AAATTTGAGCTCAAGCGGAATCCCCTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746270" ref_strand="+" ref_description="SGN-E746270 [GI|47104784]">
      <seq>caaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagagctttgtccatcgagaatccaaaagcggattgatggaaagatcaatgatattatcaagaaaggttggcccattctcaaagaagtttaggtatacatctcaaggttatatgagatcgtgcagaccttcgttaatgtgtagaaactgcgagtttcgtttgcttaagtaatgtcttgcagatgacagaataccttcatccgaatttatcctacatcatagattctgaaagtctgaatagcgagcagagacctttttacagagatcaatcaaaatttgtttgtacaatcagaataggttgattggactagacttagctgctgcagctggtggaataaatctaccggagcttccgctttccctttttttgcagggattaatcaaaattttttgtactatcttaatgttctgtataggtaataggctgattgcaccaaaactgaacattattgtgatgtaaggctgtgggaccttaaaatcatgttgttgtagcactttataattctatgtatgcttggctacccctttttcatgttgtagtagttgcaatttgcaaatactatttagctgattggatttttctttttataaatttggccacttctcggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96846" stop="91213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96546" g_stop="96114" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="546" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="691" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="91513" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="1405" r_length="714" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1406" polyA_stop="1422"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E746270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1405</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96546" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="91513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGGA</genome_strand>
        <mrna_strand>CAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262055" ref_strand="+" ref_description="SGN-E262055 [cLEG-58-N12]">
      <seq>cggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagagctttgtccatcgagaatccaaaagcggattgatggaaagatcaatgatattatcaagaaaggttggcccattctcaaagaagtttaggtatacatctcaaggttatatgagatcgtgcagaccttcgttaatgtgtagaaactgcgagtttcgtttgcttaagtaatgtcttgcagatgacagaataccttcatccgaaattatcctacatcatagattctgaaagtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96608" stop="91585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96308" g_stop="96114" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="308" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="453" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="91885" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="795" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E262055" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96308" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="91885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGA</genome_strand>
        <mrna_strand>CGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAAATTATCCTACATCATAGATTCTGAAAGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261764" ref_strand="+" ref_description="SGN-E261764 [cLEG-61-P16]">
      <seq>ggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagagctttgtccatcgagaatccaaaagcggattgatggaaagatcaatgatattatcaagaaaggttggcccattctcaaagaagtttaggtatacatctcaaggttatatgagatcgtgcagaccttcgttaatgtgtagaaactgcgagtttcgtttgcttaagtaatgtcttgcagatgacagaataccttcatccgaatttatcctacatcatagattctgaaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96470" stop="91586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96170" g_stop="96114" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="170" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="315" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="91886" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="656" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E261764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96170" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="91886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTG</genome_strand>
        <mrna_strand>GGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727578" ref_strand="+" ref_description="SGN-E727578 [LA15AE01]">
      <seq>cgattttctgacaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctacttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactggctacaaaactaaatggctatgcagcagaactttgtccatcgagaatccaaaagcggattgatggaaaaatcaatgatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96855" stop="91763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96557" g_stop="96114" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="557" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="702" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="92063" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="866" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E727578" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96557" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="92063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTAT</genome_strand>
        <mrna_strand>CGATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAACTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAAATCAATGATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709756" ref_strand="+" ref_description="SGN-E709756 [FA53AB05]">
      <seq>cactttattccagcgagagcgactggaactattccgcctcgacaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcaaattcaacagcttgaagctttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaatcccttcctaccttcaattgatgggaaacttgcctgaggaggagcttgagagatcaacactgcctacaacactaaatggctatgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96805" stop="91820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96511" g_stop="96114" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="511" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="656" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="92120" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="764" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E709756" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96511" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="92120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCTA-CTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGC</genome_strand>
        <mrna_strand>CACTTTATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGACAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAATCCCTTCCTACCTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGCCTACAACACTAAATGGCTATGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425386" ref_strand="+" ref_description="SGN-E425386 [STM-45-C1]">
      <seq>ggcaattccagcgagagcgagtgaaactattccgcttcgaaaaatttcgccggaaagtgggcgtaatcggccggcttcccccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcatctttttgcttcaatttccttttcacgatcattctgctggcattgaatccagttttgagcatccgattcccagatcggatcccggaggttccacaggatgcctctaatcagccattacaaactgcagttttctctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggaatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcccgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacagctattggaggtcttctgggctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtncaagagcagcgttgttatcactcaaattcaacagcttgaaactttttatcctgcagagcctgaacatcagaaatttgagctcaagcggaaccccttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96809" stop="91898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96509" g_stop="96114" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="512" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="657" r_length="145" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92226" g_stop="92198" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="686" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E425386" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96509" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
          <exon e_start="92226" e_stop="92198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTT---CCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAGGTCTAGTATCCATAACTACATTATGCTAATACTAATCATAATTTCGAAGGGGTTTAGTACTGAGTGTTTGTTGCACTTCCTTTCCTAGTCAAAAAAAGGGTTTAGTACTGAAGTTTCCTGCCATTGTTAATTCTTACCTCCATAAAATTCATAGAGTTATTCATGGTGGGGATTCAGGAGATTCCATTGATGCAATGCCTCTCTTGACAGTTCAGATGCGAAGGGGAAGAATAGAATGGGTTTTATCTGGAGTGATATGTACACATATATTTGCTCAAGTGTAACTGAAAAATCCTTGTGTCAGCTGGCACATGGTCTGGAATTCGGTGGAAAATGGGTCCATCTCTTTACCTCTCTCCACTTAAGTATAAAACTTGTGTGCAATAAGGTTCTCACTCGTGACGTCTACCTAAACCACACATCACAAGCTGACTCACGGCTAGACCAAAACCCTGGTTCTGTTATTTTTGGAGTTTATAAGGATTGTATAGTGCCTTTAGGAAGAATTATATGAGGTAAGCAGGAAACAGAAACATTTGAGTGGGATCTTAATCTACCTGATTTGCAGAAAGGAGTGGAGTCCAAAGCATAGAAAAATGTACTTGATGACTTCACAGAATTCATGTCCAACCAAATGTTACCAGTTTGCCCTATCCTCAGCGAACTTTACGTGGAAGAATAGAAGGATACATCCCAAATAGACAGGATAGTATATCTAGTTATAGGAGGGGAATTTTCAAAACCTTACTAAGTGCTTTTGGGGGGCCTTTTACCCCTTGACCCGATTGAGAAAGGATTAGCTTTGAAAAGAATCTTTCTTGTATTCCTATATATTCTATTTTATTCTTCTCCATTCCATCCGACAAATCTAAGAAAGTTGAGAATATATGAGGTACTTCCTTTGAAATGGAACGGTTAAAAATGTACATCTGGTCTGCTAGCAATGTGTGCACAATGCCAATCAGAAATAGGGGTTTGGACATTGGGAGAGTAGCTATTTTCATTTGGATGAATTCTTGAGCTTTCTTGGATAAATTAACATAGAGATTTGTTTTCCAGATGACGTCAAAACATCATCAGTTATGAGTGTGTAAAAGAGATTATGTAGATAAGCTTTATCCATTCATAGGGTTCTTTCAAAAATTGGAATCATAAAATTCATATATTGTTCTGGCTGGAGTCTCATTTGACGACTCTTCCTTAAACCATGGAATTTCTCTTTTTATTAGTTTCCAATGTGTACAATGGTCATGACTGCAGTTTCTTTGGAACATCCAACGAAAAATGTGAATGAAGTAAGAAGATCCATTAATAAGGCATCAAGAAGATGCAATACATGCAAAAGAGATGTAGTAGTTAGCTCACTACATGAGTGAACTATGCCAAGACCATGGATATAACAAAAAATAACAATAATACTTACAGGGGTTAGGGTGCTCTAGTTAGAAGAGCTAACTAAACATCTAGGGAAATGAAAGCTTATTTATAATAGGATACTTGTGTATTTAACCCTATCTTGGTGTATCTTAATAAAGTATTTGATTTATTACAGATAATAGTTCAAGGAAAATTTATAGGGACTTATACCATATTGGCCTTTTCCCTGTTCTCATGTTATTTTGATCCTTTGTTCTAACCACCAAGGAATTTGGTATCCGGATTGCTTTAAAAGTTGGGAACAAAAAATCTAAGCAGGCTAGATGAGGTGGTAGATAGACAACATTTATTGCAATTTTTCTTTCATGTGAAAACAAAGCTAATGGGAAACGTGTTTGTCTATTTAGGGGAAATCTTTTTGTGAGGAAACTGCCAAGATGTAACTCTCAGAAAGAGTTGCTCTAGGACTACAGGAGAACCAAAAAGGAATAAAAATTGTAGGTTATTTTTTTTTATGAGGTACAAAGTAGAAACAACATACCACGAGTGGAGTCTGGACTTTTTTGATAAGGTAAATAATTTTATTGATGATGGGAAATCTCCCATACAAGTTACCAAATGGTAGAGAATCTACATCAAACTATGATTCTTTACAGATGATGCCCACTCTGACCATTTGGTTCACAGTTTGTTACAATACTTAGATTCTTAGTCACTTGGAAAAGAAAGACTTTTTGTTGCTAAATGTTTATGTCTTTAATTATTTTTTTAGGAGTAAAATCAGGAAAGGAGAAAGATTATTTGATTTATTTCTCTGAAAAAGAAGACCCAGAACTTCCCCAGAAACAGAGCCACCTAGATTTTGTGGTTTACCATTTATTGATTCGTGAATAATGTGGACTCTTTTTCTTTCCTCATGTTTATATATTCTTCTTTTTAATTCTGACTGTCATTGCTCCAATGATATTTGAAACACATGTTGACAAATCGCTACTTTCCATTTTTCAGAAATTTGAGCTCAAGCGGAATCCCTTCCT</genome_strand>
        <mrna_strand>GGCAATTCCAGCGAGAGCGAGTGAAACTATTCCGCTTCGAAAAATTTCGCCGGAAAGTGGGCGTAATCGGCCGGCTTCCCCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCATCTTTTTGCTTCAATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTTTGAGCATCCGATTCCCAGATCGGATCCCGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTCTCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGAATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCCGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAGCTATTGGAGGTCTTCTGGGCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTNCAAGAGCAGCGTTGTTATCACTCAAATTCAACAGCTTGAAACTTTTTATCCTGCAGAGCCTGAACATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGAGCTCAAGCGGAACCCCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370629" ref_strand="+" ref_description="SGN-E370629 [TUS-27-E14]">
      <seq>acaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacaatcaaagtcaaagagcagcattgttacaactcanattcaacagcttgaagctttttatcctgcagagccctgacatcagaaatttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96847" stop="94312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96547" g_stop="96114" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="547" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94612" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="692" r_length="145" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E370629" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96547" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG</genome_strand>
        <mrna_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCANATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCCTGACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454528" ref_strand="+" ref_description="SGN-E454528 [cSTS-23-J9]">
      <seq>ggcaattccagcgagagcgagtgaaactattccgcttcgaaaaatttcgccggaaagtgggcgtaatcggccggcttcccccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcatctttttgcttcaatttccttttcacgatcattctgctggcattgaatccagttttgagcatccgattcccagatcggatcccggaggttccacaggatgcctctaatcagccattacaaactgcagttttctctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggaatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcccgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacagctattggaggtcttctgggctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccagattggctgctgttagcaaagaaagagaacatcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96809" stop="94382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96509" g_stop="96114" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="512" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94682" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="585" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E454528" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96509" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTT---CCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTC</genome_strand>
        <mrna_strand>GGCAATTCCAGCGAGAGCGAGTGAAACTATTCCGCTTCGAAAAATTTCGCCGGAAAGTGGGCGTAATCGGCCGGCTTCCCCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCATCTTTTTGCTTCAATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTTTGAGCATCCGATTCCCAGATCGGATCCCGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTCTCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGAATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCCGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAGCTATTGGAGGTCTTCTGGGCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAAC-ATC-AAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729305" ref_strand="+" ref_description="SGN-E729305 [LA20CF03]">
      <seq>gacaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactgaggaatccaaattggctgctgggggcacagacagagaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96848" stop="94410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96548" g_stop="96114" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="548" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94689" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="616" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E729305" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96548" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAAT</genome_strand>
        <mrna_strand>GACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAAATTGGCTGCTGGGGGCACAGACAGAGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272627" ref_strand="+" ref_description="SGN-E272627 [cLEM-21-B12]">
      <seq>acaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattattttcacaagcggcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96847" stop="94431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96547" g_stop="96114" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="547" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94731" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="573" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E272627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96547" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTTCACAAGCGGCACTG</genome_strand>
        <mrna_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTTCACAAGCGGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270216" ref_strand="+" ref_description="SGN-E270216 [cLEM-1-B3]">
      <seq>acaaatcggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgattccaggcaagtctttgggcaaggtcctgatgtgggtaaccagtacaggtctattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96847" stop="94550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96547" g_stop="96114" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94852" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="547" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.007" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94756" g_stop="94745" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="559" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E270216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96547" e_stop="96114"/>
          <exon e_start="94964" e_stop="94852"/>
          <exon e_start="94756" e_stop="94745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAGGTAGGATCCTTGACTTCAACCCGGGTTCCTTTTTTTTTTTCTTGAGATTGAAGACAAACATATGAAGAACAATGTTACAAATCTGCCTAGTGTAGGTCTATTATTTT</genome_strand>
        <mrna_strand>ACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG...............................................................................................GTCTATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728762" ref_strand="+" ref_description="SGN-E728762 [LA18DE03]">
      <seq>cggaattgagcaatttncggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggacccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattggaggtcttctggtctagccatgatcccaggcaagtctttgggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96841" stop="94577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96541" g_stop="96114" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94877" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="515" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E728762" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96541" e_stop="96114"/>
          <exon e_start="94964" e_stop="94877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAG</genome_strand>
        <mrna_strand>CGGAATTGAGCAATTTNCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAA-TTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGACCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATCCCAGGCAAGTCTTTGGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279748" ref_strand="+" ref_description="SGN-E279748 [cLER-5-N18]">
      <seq>ggaattgagcaattatcggacaagcggagctggcaattccagcgagagcgactggaactattccgcctcgaaaatttttgccggaaattgggtgtaatcggccggcttccctgcatgtgtacagatgaaagtcgctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaactattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96840" stop="94621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96540" g_stop="96114" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94921" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="471" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E279748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96540" e_stop="96114"/>
          <exon e_start="94964" e_stop="94921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGA</genome_strand>
        <mrna_strand>GGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279200" ref_strand="-" ref_description="SGN-E279200 [cLEL-4-N18](-)">
      <seq>gcacgaggctaagagcaactacttcttttcacatttttgctttcatttccttttcagcgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96714" stop="94626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96414" g_stop="96114" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94926" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="341" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E279200" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279200" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96414" e_stop="96114"/>
          <exon e_start="94964" e_stop="94926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCA-CGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTA</genome_strand>
        <mrna_strand>GCACGAGGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCAGCGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279366" ref_strand="-" ref_description="SGN-E279366 [cLEL-4-N20](-)">
      <seq>gcacgaggctaagagcaactacttcttttcacatttttgctttcatttccttttcacgatcattctgctggcattgaatccagttctgagcatccgattcccagatcggatccaggaggttccacaggatgcctctaatcagccattacaaactgcagtttttgctctcggaagcttctggagatcggaagcgtcatttggctgcttaaacggcatcgtaagaaccaccgtcggttattctggtggttcaaaagccaatcctgagtacagaaatttgggcgaccacgctgaatctgtacaggtcgagtatgacccccgagtacttggtttcagacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="96714" stop="94626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96414" g_stop="96114" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94964" g_stop="94926" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E279366" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279366" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="96414" e_stop="96114"/>
          <exon e_start="94964" e_stop="94926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAGGTATTTGTTTGATCTCCTTCCTTATGTTGACTAAGAACTGAAATTGATTGCCTCATCACACTTGTGCCTTAATCGCCTGTAATTGAAATCACTCTAATGTAATGTGTTCGCCAGCTTTTATTTTAAAAGCCTTTGTTGGAACATTTTTACCTATGTTGACTCCATTGTGAGAAGAAAAATTGACAGTTACAATTAGGTTTTCGGGTAGACCCAACCAGTGCCTTGTATCTTCGTTATGTACATAAATACTAGTAGTAGTTAATTTTCGGTAGAAAAAAGTATTGTGGAAGCATCTCTAGTTATAAAGTGGAATATGGAAGTTATTGTGTATGATTACCAACGACTATCTTTGAAGAAAGACTAGGTTATAGGGAGTATGAACTTTTTGTGGTTATAAAATAAACTAGAGTATGCAGAATCCAGGAGCAAGTTTGATCAAAATTCAGTTGCAATGATGTATATGAGGGACAAATTGCTAACAGCTTGGATTGCACTTCCTATGAGATGATAGTGACATTAGCTGAGGTGGGAAATGAGCAAACAGTTCTCTAATCAGTGGTTATCTAATCCAAACAATGTGATAGAAGAGTCAGCTAAGACATATCTTACTCATTATTGTTAGCTGAGTTAACATAAGCTGACGTGCTAAACCTAATTAATATCTCGATGACTGATTAGTCCCTTTCTAATTTGTAGTTGCAGACCTTTTTGTCTTTGTCTTGTATAACTGCAATGTATATGGAAGGGTTACAGTAACATGTCATTGCGTGTACTAGATATGATAACGTTTTGTGCCTTTTTGGAGGATTTTTTCTTATAGCTTTTACTTGCTGCTACATATACTTTTGAACTCTAATTCTTTGAGTTTTGCGGATAGTGGTTGATGTAATTTTGTTTTACAGTTTCCATTTGGTTGACATTCTAGTCTTGCCTGAAACTGTTTTAGGTTCTGAATGAGCTTTCCTGTCCCTTGTTTGGAGTGATTAAATGTTTATCTGTGGTTTGTTCCTGATTGCTTCAAGTAAAATGGATTATAGGTTGAGTGGCATTTTTAAATTTTCTTATCTTGACATTTACATTTAAAATTTTTGAATGTTTCATTTATCTCCTATTCAACTTGTTCAATGTACTAAATTTAATTTCTTTTAGGTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTA</genome_strand>
        <mrna_strand>GCACGAGGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552347" ref_strand="-" ref_description="SGN-E552347 [cTSB-3-K1]">
      <seq>tgatcattgtggttaagcatttgtttagactctgtcacagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaccctgggtgccccaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98509" stop="103448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98809" g_stop="99089" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="334" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="401" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103145" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="784" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="796"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E552347" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552347" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98809" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</genome_strand>
        <mrna_strand>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325910" ref_strand="+" ref_description="SGN-E325910 [cTOC-12-C12]">
      <seq>acagtagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcangctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98545" stop="103302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98845" g_stop="99089" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="298" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="365" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102285" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102286" g_stop="102335" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="415" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103002" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="598" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E325910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98845" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102286" e_stop="102335"/>
          <exon e_start="102820" e_stop="103002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</genome_strand>
        <mrna_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG................................................................................GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCANGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324534" ref_strand="+" ref_description="SGN-E324534 [cTOC-9-I24]">
      <seq>acagtagaagaagctgcactccccactggtgactaaccagcaacgttagggttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaagattttattttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98545" stop="103210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98845" g_stop="99089" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="298" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="365" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102285" i_length="80">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102286" g_stop="102335" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="415" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="102910" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="506" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E324534" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98845" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102286" e_stop="102335"/>
          <exon e_start="102820" e_stop="102910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCT</genome_strand>
        <mrna_strand>ACAGTAGAAGAAGCTGCACTCCCCACTGGTGACTAACCAGCAACGTTAGGGTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG................................................................................GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAAGATTTTATTTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538813" ref_strand="+" ref_description="SGN-E538813 [TUS-58-D24]">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98549" stop="103422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98849" g_stop="99089" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103130" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="729" r_length="311" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E538813" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98849" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538810" ref_strand="+" ref_description="SGN-E538810 [TUS-58-D24](-)">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttttcaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98549" stop="103422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98849" g_stop="99089" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103114" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="713" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="738"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E538810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98849" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCA</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302806" ref_strand="+" ref_description="SGN-E302806 [cLEY-2-I5]">
      <seq>tagaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaagttggttccttggtctaatagtctgagttacattcatctactttgtaacttaaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98549" stop="103322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98849" g_stop="99089" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="294" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103022" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="621" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E302806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98849" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTT</genome_strand>
        <mrna_strand>TAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAAGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275841" ref_strand="+" ref_description="SGN-E275841 [cLEN-18-B14]">
      <seq>agaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98550" stop="103303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98850" g_stop="99089" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="293" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="360" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="417" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103003" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="601" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E275841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98850" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTAC</genome_strand>
        <mrna_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276567" ref_strand="+" ref_description="SGN-E276567 [cLEN-17-F11]">
      <seq>agaagaagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98550" stop="103302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98850" g_stop="99089" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="293" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="360" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="417" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103002" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="600" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E276567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98850" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</genome_strand>
        <mrna_strand>AGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594760" ref_strand="+" ref_description="SGN-E594760 [38018]">
      <seq>gaagaagctgcactctcctctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaaggaagatgattgctcgatgcgggattttattctatctggtttagcaaccgtaaaaaattcagtgtaagaatgttggagtagattcctaaggttggtccttggtctcaatagtctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98575" stop="103289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98851" g_stop="99089" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="285" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="352" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="409" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="102989" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="581" r_length="172" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E594760" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98851" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="102989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAA-GAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGT-AAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCT-AATAGTCTGAG</genome_strand>
        <mrna_strand>GAAGAAGCTGCACT-CTC-C---TC--TAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAACCGTAAAAAATTCAGTGTAAGAATGTTGGAGTAGATTCCTAAGGTTGG-TCCTTGGTCTCAATAGTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353689" ref_strand="+" ref_description="SGN-E353689 [cTOS-10-H10]">
      <seq>aagctgcactccccactggtcactaaccagcaacgttaggtttactgagaagtaaggaaagcgggaggaatcagccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacagtagagatgaagagtggagagctgtacagaggaagtatggtggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcangattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttgggtctatagtctgangtacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98555" stop="103384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98855" g_stop="99089" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="288" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="355" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="412" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103084" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="677" r_length="265" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E353689" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98855" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTT-GGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTT</genome_strand>
        <mrna_strand>AAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCANGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGGTCT-ATAGTCTGANGTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570987" ref_strand="+" ref_description="SGN-E570987 [15657]">
      <seq>ctgcactctcctctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcttgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacatctagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgctcgatgcgggattttattctatctggtttagcaaaccgtaaaaattccagtgtaaagaatgttggagtagattcctaagggttggtccttgggtctaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98575" stop="103284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98865" g_stop="99089" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="278" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="345" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="402" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="102984" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="571" r_length="169" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E570987" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98865" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="102984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGC-AATCGTAAAAATT-CAGTGT-AAGAATGTTGGAGTAGATTTCTAA-GGTTGGTTCCTTGGTCTAATAGT</genome_strand>
        <mrna_strand>CTGCACTCTCCTCTAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACATCTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAAACCGTAAAAATTCCAGTGTAAAGAATGTTGGAGTAGATTCCTAAGGGTTGGTCCTTGGGTCTAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620510" ref_strand="+" ref_description="SGN-E620510 [71212]">
      <seq>tctaaccagcaacgttaggtttttggagaagtaaagaaagcgggagaaatccgccatgagtcggagcgtgggcataccggtgaagcttctacatgaagcgacagggcatatagtgacggtagagatgaagagtggagagctatacagaggaagtatggtggagtgcgaggataactggaattgccaactggagagcattacgtacacagctaaagatgggagagtgtcacaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcgggggcgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgctcgatgcgggattttattctatctggtttagcaaccgtaaaaattcagtgtaagaatgttggagtagattcctaaggttggtccttggtctaatagtctgagtcacattcgtctactttgtaatttaacctttttcacacacgacttaagaaggctggaatatgagtgcttttcaaattgcctctgtgcttgtacttcgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98577" stop="103390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98876" g_stop="99089" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="334" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="391" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103090" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="661" r_length="270" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E620510" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98876" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTG</genome_strand>
        <mrna_strand>TCTAACCAGCAACGTTAGGTTTTTGGAGAAGTAAAGAAAGCGGGAGAAATCCGCCATGAGTCGGAGCGTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACGGTAGAGATGAAGAGTGGAGAGCTATACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTGGAGAGCATTACGTACACAGCTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCACAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGGCGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTCGATGCGGGATTTTATTCTATCTGGTTTAGCAACCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTCCTAAGGTTGG-TCCTTGGTCTAATAGTCTGAGTCACATTCGTCTACTTTGTAATTTAACCTTTTTCACACACGACTTAAGAAGGCTGGAATATGAGTGCTTTTCAAATTGCCTCTGTGCTTGTACTTCGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286609" ref_strand="+" ref_description="SGN-E286609 [cLES-12-I10]">
      <seq>ggagtgcgaggataactggaattgccaactcgagagcatcacttacactgccaaagatgggagagtgtcgcaactagagcatgttttcattcgaggcagcaaagtcaggttcatgataattcctgatatgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="98735" stop="103353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99035" g_stop="99089" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102014" g_stop="102066" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="108" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102139" g_stop="102205" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="175" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="232" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102820" g_stop="103053" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="466" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E286609" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99035" e_stop="99089"/>
          <exon e_start="102014" e_stop="102066"/>
          <exon e_start="102139" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAAGTACGCTTTAATTATCCTTCTGGTTTCATTTGGGATTTTGCTGATTTTGTTAAAGCGTCATTATTTGTGCTTTCTTTTTCTGTTTCTTAAACCCTAAACCCTAGTTATTTTCTTCGATTCTCTTGTCTGCTTATGATATTGTATCTTACTCTTGTTTGCACTTATCCTATATTATGTTGAACATGTGCGTTTGGAAACAAGCTAATTGATTGTCAGTGCAATATTTAGGGTGACTATAGTGGATACTTGTTTAACTTCCAAAGAGGAGTAGTACACAGAATGACATGTTCATTTTTTACTGAGTTTTATCCACTTACCACTTGTTCCACATTTTACCAGTAGAGTGTAAACACTCCATGTGAAGATATGCTTATTCACATTGCTCGAAGTAGGAAGTTCTTGATCACCTGAGTAGCTTGATTTCTTTGAATTTGCTACCGGATTCATATTATCTTGGTTAGGCATTTCTAGACTGGGATTGCTCTGAAACATATCATATATTGACTTTGAATTTCAAATTATGGCCTCTATTATTTCAAATCTTCTCCTAAAATTCGTAAATATCAAGCCCTGTTTATTCATGTATAGTAACAAAGCCTATTTTTTATCACTTAGAAACACTTATGTTATCTCGATAATTTTACCTTTTGAATAGCTTTATTTAAAGTCTGTTTGATTCGTCACTTAGAAGCGATGAACCAATGCAAAACAAGGGATTATTGCTTCATTGGTGAAGCCATACATTTAAGAGAAGTGTGTGGTCCACACAATGATGCACAATGTGATTCGGATGAGAAGCGGTTCACTCTCTTAATCTCAACTTTGAGGATTAGGCTTAAATTAACATTATTGTTATATGATGCTAATATTAGTTATTTAGTTGAAATTTGCTTACATAGTATTTCTTAATCTTTCATAAATTGTGTGCTTTACTTATCGCCTTTTCACTTCAAGCACCGTGAACCTTGCCATTTTTTTTGTGTGTTTTTGGCTGATTTTGAGTTACTTTTGTCACATCTCAACCTTGAAAAGCAAATACGGTGTTGAATTCATAGATGTGTAGCCCAAAAACAAAGATTTAGAGCATCTCTTCTCCAATGTTGTAAAGATAGCATAAACATTTGAAAACCTATAGAAAAAAAGAAAGTTTTTGAAGTTCAAGTTACCAAGAGTTTGCTTCCTTGCTTTTCGAATAAGGGGGGACTATAGAAAGCCTCATTCAACCATATAAAACAGGTGCACTTTTCTGGCATTCTTGAATGAAGGGGAATATATTGTTATATCTTGGGACAAAGCCCATAAAAGCCAAGTGTTGTTTTTCTTGCTTCTCCTAATTACCAGAACAAACGCTATATTGCTCATTCATGAGGTTGGCAGAATCATACATGTTTCATCTCGCTTGTTTCTCTACCTCCTTCTGTCTCCCATCAATATGTGAAGGTCTCGATGACATCCATAACTACATTCGAATTTCTTCTAGGCATAAAATTTGTATTGTCAATTAGAAAAATTGGCACAACAGCACAACTAGGCATATCAAACATTGATAATGGAAAAGTCCGAGTTTTCCTGCCATGATGACCCATTTTGAGGCCTCACTCATGGATAGAATAAATGACCAGTGGACCTTTCTTTTTCTATTTTTACCTTTCAATGGAAATTGAAGAGTTTATGAAATTTCTTTCAACTGAAAATGAAAGATCTTTTGTTTTTCTTGACTGGTTAACATTTACCTTATCATAAAAAAGATGAGAGCTGGAGCAAGTCCCACCATCTTCATCTGGCCTTAGAAGATTCATCATTGCTGAAGAAAAAACCAACTAGTTTGGCTGACTAGTGCACATTGTGTGCAAATTAGGTGCTTTTCATTTACTTGTCTTTAATAAGGAATGTCATCCCCGATCACTTTCGTGGGTTACTTTTATTCTATCGTGTTCTTGAGAAATCTGCTTCATGTTAATGGAAAAGCTAGTTCCAGTTATTGGAGCAATGTCTTGTCATTTCTAGTGTTGAGCTAAATTCCTCCAAAAAATGAATTAAGGAGAAGATGCTTTGAAGGCACTCTTACTCAAGCTTCAAGCTAAAAGCCAGAGTCTTAACATGTCTCTGCAGCTGGAGCAACCTTTCCCCTGTAACTTCCCTGATATGTTTTTGAACTTTGTTAGCTCTTTAACTTTAGGTTAGACCTTTTGTAATAGAGCTAACATTGTCTTTTCTTTAGTATTGTTCTGTAAATTTTGCATCTCCGTGATGCCTTCGATGCAATTCATTTCCTCATTTTAAATAAAAAGGAAGTAACAAGAAGATGAAAAACTAGAGATTTTAAGGAGGACTTCAACTTTCTAAAGAACGGAGATAGGAAATCTTTCCAATTTAGGAAACCTTTATCTTCCAAGTTTTGTTCTTCCTAATTTTGGGCCTACTGATGTCATATCAAGATGCTGGGAGTTCAGTAGAGATTTAGAATTTTTGGCATTTTGTCTTGTAACTTTAATGTGCTATCTGATAATGAGCTCCACGTTTATATTTTTTGAACTGTATGCCTTCTTTTGGCTCCTCACTTGTTTCTTTTGCTTGGGTAGGTGTATGCAGTATTGCCTATAAATTATGAAAAGTAGGAAAAAGGGAGTTTTACCTGCTGCTGTGCCTATCCTTGATTCTTATTACAATTGTTCTTCTTTAGTAAAAGGAGAAACACATGTCTGAAAAGAAAATGCATCAAGATACAAAATTGTATATAAAAATTAAATAAAGCACATAAAACTATCTAAATAACTATCTTAATTTTTAGCAAATGCTGAATTTTGTGGTAATACTAAAAATTACACTTCTAGGCATATTTTGGTGAGTCGATGAAGGAAGTGAGAAGCTGGATTAACTAGAATTAAAAGTCTCTTTTACATTGCTAATATTGATCTCTGCAGGATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTACATGGTTAACTTTTTTTGTATACTGTGCTATTGCTGGTAAGATCATATCTGAACATTGATTTCCACCAGGTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAG</genome_strand>
        <mrna_strand>GGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG........................................................................GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222086" ref_strand="+" ref_description="SGN-E222086 [cLEL-36-M12](-)">
      <seq>tgcttaagaatgctcccatgttcaagcggctagaagcaagaatcaagggaaaaggtacatcacttggtgttggtcggggacgtgctattgctatgcgagctaaagctcaggctgctggtcgtggagcaccacctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtctgagttacattcatctactttgtaacttaacctttttcacatacgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="101859" stop="108698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102159" g_stop="102205" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102279" g_stop="102335" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="104" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102820" g_stop="103100" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="385" r_length="281" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E222086" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102159" e_stop="102205"/>
          <exon e_start="102279" e_stop="102335"/>
          <exon e_start="102820" e_stop="103100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAGGTTCTTCCTCACTTTCTCTAAATTGTCACTGCTCTTTCAAGGGCTTTGCTTATGATTATTTTCATTTTTGAAGGGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAAGTGAGTGCTTCTTCAGTTGTCACTGTTCATAGTTGGACTTTTGTATTTGAAGTCAACTTCTAAGTTTACCTCATCTGGTACTCGTAGACCTCAAGCTCATTGCAGTTATGATTCGAGAGGGCGATGCCAACTTTACTTTGGTTTAGAGAAGAGGAGGGGAGAGGGAACTTTCTGATTGTTTTACCTTTCCTTCTATTTTTTCCTTGAATTTTTTTTTTGCTAGTTATAGGGGCAATTTTAAGAAGTGTTAACCCTTTGACTTTTACTCTTTTTATCCTTTCCTCATTTCAACATACCTATATTGCCTAGATTTCTCCCAGCGCTTTTATTTGGCTTTCTTTTTGTTATGGGGGAAAGGGTTGGAGGGTTGTTATTCGGGGGAGGCGGAGGCTGTATATAAGGAATTAATCATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAA</genome_strand>
        <mrna_strand>TGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG.........................................................................GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308307" ref_strand="+" ref_description="SGN-E308307 [cLEZ-6-G23](-)">
      <seq>ctaaagctcaggcagctggtcgtggagcaccacctggtcggggaactgtgccacctgtaagaaaatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtcaaatagtttgagttacattcatctactttgtaaattaacctttttcacatacgactagagaatgctggaaaatgagtgcttttcaagttgcctctgtgcttgtacttcacctgtgttaagaaatatggattagtccagttcttcactttttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="102518" stop="108698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="102749" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102750" i_stop="102819" i_length="70">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102820" g_stop="103130" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="316" r_length="311" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103131" i_stop="103548" i_length="418">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.445" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103549" g_stop="103568" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="336" r_length="20" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E308307" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="102749"/>
          <exon e_start="102820" e_stop="103130"/>
          <exon e_start="103549" e_stop="103568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATATGCTTAGCCAAGTCTTACAATTCTTCTATTGGAGAAATACACCTGATTGTAAACACCTTGCTTGCAGGCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAAGCATGTCATTGCGCCTGTCTTTTTAATGCTTGATGTGGGCCTTTTGAGCTCACAAAAGGAATACTCTGTTTGCTTGGGAAGGCATGTTTTATTTTTGCTTGTTGGAGGATCCGTATACTATCTATTGCACTTCAGAAGCCTACTTTTGCATTGTTAAGCTAACGTGTGCTTGGAACTGAAGAGTGTTGAAAGTGCCATTCTTTTTCTTGTTTCTTTTTGAGGTGAGGTAATGAGTCTTAATTACAATCAAAAACATATATTTGGTTAGTTATCGATTCATTACATCTGCATCTCAAGTTCTGGGATCAAGAGTTTCTGCTGTTCATTTAGAATCACAAGGAGGCTAAACATTTTATACTTAGTTATTTGGTCATGTATGCTAGTAATGCAGTACTCTAATTAGGAGGAGAATAAGTGAATAAA</genome_strand>
        <mrna_strand>CTAAA......................................................................GCTCAGGCAGCTGGTCGTGGAGCACCACCTGGTCGGGGAACTGTGCCACCTGTAAGAAAATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCAAATAGTTTGAGTTACATTCATCTACTTTGTAAATTAACCTTTTTCACATACGACTAGAGAATGCTGGAAAATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538776" ref_strand="+" ref_description="SGN-E538776 [TUS-58-D4](-)">
      <seq>ctggtcggggtactgtgccacctgtaagaagatgattgcttgatgcaggattttattttatctggtttagcaatcgtaaaaattcagtgtaagaatgttggagtagatttctaaggttggttccttggtctaatagtatgagttacattcatctactttgtaacttaacctttttcacatccgactagagaatgctggaatatgagtgcttttcaagttgcctctgtgcttgtacttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="+" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="102548" stop="103388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102848" g_stop="103088" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="+" ref_id="SGN-E538776" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102848" e_stop="103088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</genome_strand>
        <mrna_strand>CTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTATGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATCCGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341968" ref_strand="+" ref_description="SGN-E341968 [cTOF-10-G15]">
      <seq>aatattaataatttctctttctaaaacaacaacaaaatgggtttaaagaaaacaagtagcagcaaacaacaaacagcagctttgaaacaaatgatcaaaagatgttctagttttggaaaaaatgagaataatggtttcccacatgatgttccaaaaggacattttgttgtgtacgttggagaaaatagaagtagatatataatacctatttcttggttaacatatcctcaatttcaaaatttgcttcaaagagctgaagaagaatttggatttagtcatgatatgggcattactattccttgtcatgaacatgatttttgttcacttatttcaatgtttagatgaaacaacaaaatataatcttcctttttccttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0130B04-jWKHV/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0130B04.1" temp_strand="-" temp_description="C02HBa0130B04.1  AC215392.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0130B04 sequenced_by:kribb upload_account_name:korea">
        <position start="108608" stop="107632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108308" g_stop="107932" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="388"/>
      <MATCH_line gen_id="C02HBa0130B04.1" gen_strand="-" ref_id="SGN-E341968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0130B04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108308" e_stop="107932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</genome_strand>
        <mrna_strand>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>48</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13001" PGL_stop="13448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13001" e_stop="13448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="13001" e_stop="13448" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13001" stop="13322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13001" stop="13291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13002" stop="13448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATATTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTTAATTGTATAATTAAGTGTATAATATGAAGATATACATTTTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAAAACAGAAATAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGTGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTATTTTATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  I  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  R  W  S  F  S  L  Q  Y  L  K  *  N  V  C  *  L  Y  N  *  V  Y  N  M  K  I  Y  I  F  A  C  V  Y  I  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  S  S  Y  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  Y  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  I  *  R  Y  T  F  L  H  V  Y  I  *  F  S  L  A  L  Y  K  T  E  I  E  L  Y  T  S  V  Y  K  A  R  E  V  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  L  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  I  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  L  I  V  *  L  S  V  *  Y  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  *  N  Y  T  L  L  C  I  K  R  E  R  *  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  L  *  L  F  Y  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="24486" PGL_stop="25384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24486" e_stop="24506"/>
            <exon e_start="24826" e_stop="25298"/>
            <exon e_start="25375" e_stop="25384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.874" acc_prob="0.000" e_score="0.619"/>
          <exon-intron don_prob="0.000" acc_prob="0.934" e_score="0.922"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.619">
            <gDNA_exon_boundary e_start="24486" e_stop="24506" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.874" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24507" i_stop="24825" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="24826" e_stop="25298" e_length="473"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.934">
            <gDNA_intron_boundary i_start="25299" i_stop="25374" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="25375" e_stop="25384" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24486" stop="24506"/>
              <exon start="24826" stop="25298"/>
              <exon start="25375" stop="25384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGAAACTCTTTATGATAG : TGGAAGCTAACATCTGTCACGCTTTTCTAAGCTTTTGAGCTGATTCATGTTTTGAGTGGAGTTTCTTTCCCATCTCTCACCGGACCACCCTTTTCGTGATATTACACATGCACTTCCTCTTTTCTTGTTAATATTACTCACTCTTCTTTGTTTAATACACAATGATGATTTGGAGGTTTTCATCTATTGATGTTCAATCAAACATATCTCATGTCGAACTAAGAAACTGTTGCTTGGCACGGCACTTCAGGCGGGTCTATGAGATTTTGGGAAATGTTCCTTTTTTGGGATTGCATGCATTACTCAACTAATGGGCTGTTTGACGGTTTTGTTCATTAATATCTCACTAATATTTTTTTTTTTTTATAGATGTTCTTTATTTATTATTTTGTGGTTTTACTTGTAATTGGGAGAACTGGTATGACTGTACACAACACAAAACATTAACGCTTACATTTTATTTTGGTTTTATT : AAAAAAAATA</gDNA_template>
            <first_frame> F  *  N  S  L  *  *  :  W  K  L  T  S  V  T  L  F  *  A  F  E  L  I  H  V  L  S  G  V  S  F  P  S  L  T  G  P  P  F  S  *  Y  Y  T  C  T  S  S  F  L  V  N  I  T  H  S  S  L  F  N  T  Q  *  *  F  G  G  F  H  L  L  M  F  N  Q  T  Y  L  M  S  N  *  E  T  V  A  W  H  G  T  S  G  G  S  M  R  F  W  E  M  F  L  F  W  D  C  M  H  Y  S  T  N  G  L  F  D  G  F  V  H  *  Y  L  T  N  I  F  F  F  L  *  M  F  F  I  Y  Y  F  V  V  L  L  V  I  G  R  T  G  M  T  V  H  N  T  K  H  *  R  L  H  F  I  L  V  L  L :   K  K  I </first_frame>
            <second_frame>  F  E  T  L  Y  D  S :   G  S  *  H  L  S  R  F  S  K  L  L  S  *  F  M  F  *  V  E  F  L  S  H  L  S  P  D  H  P  F  R  D  I  T  H  A  L  P  L  F  L  L  I  L  L  T  L  L  C  L  I  H  N  D  D  L  E  V  F  I  Y  *  C  S  I  K  H  I  S  C  R  T  K  K  L  L  L  G  T  A  L  Q  A  G  L  *  D  F  G  K  C  S  F  F  G  I  A  C  I  T  Q  L  M  G  C  L  T  V  L  F  I  N  I  S  L  I  F  F  F  F  Y  R  C  S  L  F  I  I  L  W  F  Y  L  *  L  G  E  L  V  *  L  Y  T  T  Q  N  I  N  A  Y  I  L  F  W  F  Y   : *  K  K   </second_frame>
            <third_frame>   L  K  L  F  M  I   : V  E  A  N  I  C  H  A  F  L  S  F  *  A  D  S  C  F  E  W  S  F  F  P  I  S  H  R  T  T  L  F  V  I  L  H  M  H  F  L  F  S  C  *  Y  Y  S  L  F  F  V  *  Y  T  M  M  I  W  R  F  S  S  I  D  V  Q  S  N  I  S  H  V  E  L  R  N  C  C  L  A  R  H  F  R  R  V  Y  E  I  L  G  N  V  P  F  L  G  L  H  A  L  L  N  *  W  A  V  *  R  F  C  S  L  I  S  H  *  Y  F  F  F  F  I  D  V  L  Y  L  L  F  C  G  F  T  C  N  W  E  N  W  Y  D  C  T  Q  H  K  T  L  T  L  T  F  Y  F  G  F  I  :  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="35037" PGL_stop="33013"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34982" e_stop="34654"/>
            <exon e_start="34603" e_stop="34205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="34982" e_stop="34654" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34653" i_stop="34604" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="34603" e_stop="34205" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34982" stop="34654"/>
              <exon start="34603" stop="34205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34982" stop="34654"/>
              <exon start="34603" stop="34213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34981" stop="34654"/>
              <exon start="34603" stop="34494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAATTAGCCGCTAGGTTGTTCTACGCATTAGGGTTATCATTCAACTTTGTCAACACTCCTTATTTTAAAAAAATATTGTAAGTTTCTAGCCGAAAATTTCATTCCCGGTTATATTCCCCAATCATATAATAGATTGAGGTCAACTCTTTTAGCTCAAGAAAAAACACATATTGATAGAAAGTTGCAACCAATAAAAGTTACATGAAAAAAGAAAGGATTGTCGATTTGTTTGGATGAATGGTCCGATACTAAAAGACGACATTTGATCAATATAATGACATCATCTGGTGGAGGTCCAATGTTTTTGAATTCAATCAATTCTAGTG : AAAATGTAGGTTCAAACAATGTTGTTCAAGTTCTTATGGATAATGCAAGTAATATGAAACTTGCCGGTACTATAGTGGAGCAAAAATATCCTCATATATTTTGGACTATTTGCGTTGTTAATTGTTTGAATCCAACTTTGAAAAGTATGTGCCAACCTTCGAAAAAATCACCTCACTTTACTAATTGTAAATGAATTTTAGAGTTACTTAGTGAAATGAGTAATTTAAAGAATTTTGTTGTGAACCATGACACGGCACATGCACTTTTTCAAAAACATTCGGATTTGTGTTTGTTGAAGGTTGGTGAAACAAGATTTGCCTCACACATCATTATGACCACCCGAATTCGCTAAGTAAAATCTGCTTTGGAGAAAATGGTCATGGATGATGAATGGAATA</gDNA_template>
            <first_frame> D  K  L  A  A  R  L  F  Y  A  L  G  L  S  F  N  F  V  N  T  P  Y  F  K  K  I  L  *  V  S  S  R  K  F  H  S  R  L  Y  S  P  I  I  *  *  I  E  V  N  S  F  S  S  R  K  N  T  Y  *  *  K  V  A  T  N  K  S  Y  M  K  K  E  R  I  V  D  L  F  G  *  M  V  R  Y  *  K  T  T  F  D  Q  Y  N  D  I  I  W  W  R  S  N  V  F  E  F  N  Q  F  *  * :   K  C  R  F  K  Q  C  C  S  S  S  Y  G  *  C  K  *  Y  E  T  C  R  Y  Y  S  G  A  K  I  S  S  Y  I  L  D  Y  L  R  C  *  L  F  E  S  N  F  E  K  Y  V  P  T  F  E  K  I  T  S  L  Y  *  L  *  M  N  F  R  V  T  *  *  N  E  *  F  K  E  F  C  C  E  P  *  H  G  T  C  T  F  S  K  T  F  G  F  V  F  V  E  G  W  *  N  K  I  C  L  T  H  H  Y  D  H  P  N  S  L  S  K  I  C  F  G  E  N  G  H  G  *  *  M  E   </first_frame>
            <second_frame>  T  N  *  P  L  G  C  S  T  H  *  G  Y  H  S  T  L  S  T  L  L  I  L  K  K  Y  C  K  F  L  A  E  N  F  I  P  G  Y  I  P  Q  S  Y  N  R  L  R  S  T  L  L  A  Q  E  K  T  H  I  D  R  K  L  Q  P  I  K  V  T  *  K  K  K  G  L  S  I  C  L  D  E  W  S  D  T  K  R  R  H  L  I  N  I  M  T  S  S  G  G  G  P  M  F  L  N  S  I  N  S  S   : E  N  V  G  S  N  N  V  V  Q  V  L  M  D  N  A  S  N  M  K  L  A  G  T  I  V  E  Q  K  Y  P  H  I  F  W  T  I  C  V  V  N  C  L  N  P  T  L  K  S  M  C  Q  P  S  K  K  S  P  H  F  T  N  C  K  *  I  L  E  L  L  S  E  M  S  N  L  K  N  F  V  V  N  H  D  T  A  H  A  L  F  Q  K  H  S  D  L  C  L  L  K  V  G  E  T  R  F  A  S  H  I  I  M  T  T  R  I  R  *  V  K  S  A  L  E  K  M  V  M  D  D  E  W  N  </second_frame>
            <third_frame>   Q  I  S  R  *  V  V  L  R  I  R  V  I  I  Q  L  C  Q  H  S  L  F  *  K  N  I  V  S  F  *  P  K  I  S  F  P  V  I  F  P  N  H  I  I  D  *  G  Q  L  F  *  L  K  K  K  H  I  L  I  E  S  C  N  Q  *  K  L  H  E  K  R  K  D  C  R  F  V  W  M  N  G  P  I  L  K  D  D  I  *  S  I  *  *  H  H  L  V  E  V  Q  C  F  *  I  Q  S  I  L  V  :  K  M  *  V  Q  T  M  L  F  K  F  L  W  I  M  Q  V  I  *  N  L  P  V  L  *  W  S  K  N  I  L  I  Y  F  G  L  F  A  L  L  I  V  *  I  Q  L  *  K  V  C  A  N  L  R  K  N  H  L  T  L  L  I  V  N  E  F  *  S  Y  L  V  K  *  V  I  *  R  I  L  L  *  T  M  T  R  H  M  H  F  F  K  N  I  R  I  C  V  C  *  R  L  V  K  Q  D  L  P  H  T  S  L  *  P  P  E  F  A  K  *  N  L  L  W  R  K  W  S  W  M  M  N  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34774" stop="34654"/>
                    <exon start="34603" stop="34410"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKGLSICLDEWSDTKRRHLINIMTSSGGGPMFLNSINSSENVGSNNVVQVLMDNASNMKLAGTIVEQKYPHIFWTICVVNCLNPTLKSMCQPSKKSPHFTNCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35037" e_stop="34948"/>
            <exon e_start="33942" e_stop="33417"/>
            <exon e_start="33319" e_stop="33013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.878"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.941"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="35037" e_stop="34948" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34947" i_stop="33943" i_length="1005"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="33942" e_stop="33417" e_length="526"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33416" i_stop="33320" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="33319" e_stop="33013" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="34948"/>
              <exon start="33942" stop="33417"/>
              <exon start="33319" stop="33154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35037" stop="34948"/>
              <exon start="33942" stop="33549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33932" stop="33417"/>
              <exon start="33319" stop="33013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGTAGTGGAGCTACCGCAAAATCATTCGGTATCTATGAGAGGAATGCGGCCGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGG : TGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAATGGGCCAAGCAAATATTGGAATGTTG : GTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACCAGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</gDNA_template>
            <first_frame> F  E  *  W  S  Y  R  K  I  I  R  Y  L  *  E  E  C  G  R  Q  I  S  R  *  V  V  L  R  I  R  :  W  N  K  S  N  T  P  L  H  C  M  A  H  S  L  V  P  K  Y  Y  H  E  S  W  L  *  G  E  N  G  I  Q  K  L  A  P  S  E  D  S  E  I  S  L  N  R  V  K  C  F  Q  R  Y  F  K  D  F  N  E  M  K  Q  A  S  L  E  Y  R  S  F  R  S  G  N  G  Y  F  S  E  P  H  V  I  E  A  M  M  Y  E  D  S  L  S  W  W  A  N  H  G  V  S  A  L  L  L  Q  Q  L  A  Y  K  L  L  T  Q  P  T  S  S  S  C  C  E  R  N  W  S  T  Y  S  L  I  H  N  I  K  R  N  N  L  A  T  S  R  A  E  D  L  V  F  V  H  Y  N  L  R  L  L  S  R  K  K  E  K  Y  I  N  G  P  S  K  Y  W  N  V   : G  G  D  R  F  D  I  D  E  T  T  N  D  L  T  S  F  Q  *  M  I  L  K  L  K  V  *  Y  L  R  K  S  L  K  I  L  N  K  L  K  K  M  W  K  R  *  L  T  *  L  N  N  L  I  I  D  N  I  L  L  L  C  *  F  *  V  M  D  *  V  E  T  I  S  C  F  L  F  N  S  M  F  Y  T  F  T  W  C  I  E  Y  *  L  V  I  M  N  I  *  I  V  D   </first_frame>
            <second_frame>  L  S  S  G  A  T  A  K  S  F  G  I  Y  E  R  N  A  A  D  K  L  A  A  R  L  F  Y  A  L  G :   G  T  K  V  T  H  L  Y  I  V  W  H  I  L  W  F  P  N  I  I  M  N  H  G  F  K  E  R  M  E  F  K  S  *  L  P  V  K  I  V  K  F  H  *  I  E  S  S  A  F  K  G  T  L  K  I  L  M  K  *  N  K  P  H  W  S  I  D  P  F  V  V  E  M  A  I  L  V  S  L  M  *  L  R  L  *  C  M  K  I  L  F  L  G  G  Q  I  M  G  S  R  L  Y  F  C  N  N  *  L  T  N  C  L  L  N  R  L  L  P  L  V  V  K  E  I  G  V  H  I  L  *  F  T  I  S  R  E  I  T  *  Q  L  Q  E  P  K  I  *  C  L  Y  I  I  I  F  G  C  C  L  A  R  K  R  N  I  *  M  G  Q  A  N  I  G  M  L  :  V  E  I  D  L  I  L  M  R  Q  P  M  I  *  P  A  F  N  R  *  S  S  N  *  K  C  D  I  *  G  R  V  *  R  F  *  I  S  *  R  K  C  G  R  D  S  *  L  N  *  I  T  *  *  L  T  I  F  C  C  Y  V  N  F  K  L  W  I  K  L  R  Q  S  L  A  F  C  S  I  V  C  F  T  L  L  L  G  V  L  N  I  D  *  *  L  *  I  S  K  L  W  T  </second_frame>
            <third_frame>   *  V  V  E  L  P  Q  N  H  S  V  S  M  R  G  M  R  P  T  N  *  P  L  G  C  S  T  H  *   : V  E  Q  K  *  H  T  S  T  L  Y  G  T  F  F  G  S  Q  I  L  S  *  I  M  A  L  R  R  E  W  N  S  K  A  S  S  Q  *  R  *  *  N  F  I  E  *  S  Q  V  L  S  K  V  L  *  R  F  *  *  N  E  T  S  L  I  G  V  *  I  L  S  *  W  K  W  L  F  *  *  A  S  C  D  *  G  Y  D  V  *  R  F  S  F  L  V  G  K  S  W  G  L  G  S  T  F  A  T  I  S  L  Q  I  A  Y  S  T  D  F  F  L  L  L  *  K  K  L  E  Y  I  F  F  D  S  Q  Y  Q  E  K  *  L  S  N  F  K  S  R  R  F  S  V  C  T  L  *  S  S  V  V  V  S  Q  E  R  E  I  Y  K  W  A  K  Q  I  L  E  C  W :   W  R  S  I  *  Y  *  *  D  N  Q  *  S  N  Q  L  S  I  D  D  P  Q  I  E  S  V  I  F  E  E  E  F  E  D  F  E  *  V  E  E  N  V  E  E  I  A  N  L  I  K  *  L  D  N  *  Q  Y  F  V  V  M  L  I  L  S  Y  G  L  S  *  D  N  L  L  L  F  V  Q  *  Y  V  L  H  F  Y  L  V  Y  *  I  L  I  S  N  Y  E  Y  L  N  C  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33864" stop="33417"/>
                    <exon start="33319" stop="33264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GENGIQKLAPSEDSEISLNRVKCFQRYFKDFNEMKQASLEYRSFRSGNGYFSEPHVIEAMMYEDSLSWWANHGVSALLLQQLAYKLLTQPTSSSCCERNWSTYSLIHNIKRNNLATSRAEDLVFVHYNLRLLSRKKEKYINGPSKYWNVGGDRFDIDETTNDLTSFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33951" e_stop="33417"/>
            <exon e_start="33319" e_stop="33013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.940"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="33951" e_stop="33417" e_length="535"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33416" i_stop="33320" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="33319" e_stop="33013" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33951" stop="33417"/>
              <exon start="33319" stop="33013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33932" stop="33417"/>
              <exon start="33319" stop="33013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGCTAGGTGGAACAAAAGTAACACACCTCTACATTGTATGGCACATTCTTTGGTTCCCAAATATTATCATGAATCATGGCTTTAAGGAGAGAATGGAATTCAAAAGCTAGCTCCCAGTGAAGATAGTGAAATTTCATTGAATAGAGTCAAGTGCTTTCAAAGGTACTTTAAAGATTTTAATGAAATGAAACAAGCCTCATTGGAGTATAGATCCTTTCGTAGTGGAAATGGCTATTTTAGTGAGCCTCATGTGATTGAGGCTATGATGTATGAAGATTCTCTTTCTTGGTGGGCAAATCATGGGGTCTCGGCTCTACTTTTGCAACAATTAGCTTACAAATTGCTTACTCAACCGACTTCTTCCTCTTGTTGTGAAAGAAATTGGAGTACATATTCTTTGATTCACAATATCAAGAGAAATAACTTAGCAACTTCAAGAGCCGAAGATTTAGTGTTTGTACATTATAATCTTCGGTTGTTGTCTCGCAAGAAAGAGAAATATATAAATGGGCCAAGCAAATATTGGAATGTTG : GTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACCAGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</gDNA_template>
            <first_frame> L  A  R  W  N  K  S  N  T  P  L  H  C  M  A  H  S  L  V  P  K  Y  Y  H  E  S  W  L  *  G  E  N  G  I  Q  K  L  A  P  S  E  D  S  E  I  S  L  N  R  V  K  C  F  Q  R  Y  F  K  D  F  N  E  M  K  Q  A  S  L  E  Y  R  S  F  R  S  G  N  G  Y  F  S  E  P  H  V  I  E  A  M  M  Y  E  D  S  L  S  W  W  A  N  H  G  V  S  A  L  L  L  Q  Q  L  A  Y  K  L  L  T  Q  P  T  S  S  S  C  C  E  R  N  W  S  T  Y  S  L  I  H  N  I  K  R  N  N  L  A  T  S  R  A  E  D  L  V  F  V  H  Y  N  L  R  L  L  S  R  K  K  E  K  Y  I  N  G  P  S  K  Y  W  N  V   : G  G  D  R  F  D  I  D  E  T  T  N  D  L  T  S  F  Q  *  M  I  L  K  L  K  V  *  Y  L  R  K  S  L  K  I  L  N  K  L  K  K  M  W  K  R  *  L  T  *  L  N  N  L  I  I  D  N  I  L  L  L  C  *  F  *  V  M  D  *  V  E  T  I  S  C  F  L  F  N  S  M  F  Y  T  F  T  W  C  I  E  Y  *  L  V  I  M  N  I  *  I  V  D   </first_frame>
            <second_frame>  *  L  G  G  T  K  V  T  H  L  Y  I  V  W  H  I  L  W  F  P  N  I  I  M  N  H  G  F  K  E  R  M  E  F  K  S  *  L  P  V  K  I  V  K  F  H  *  I  E  S  S  A  F  K  G  T  L  K  I  L  M  K  *  N  K  P  H  W  S  I  D  P  F  V  V  E  M  A  I  L  V  S  L  M  *  L  R  L  *  C  M  K  I  L  F  L  G  G  Q  I  M  G  S  R  L  Y  F  C  N  N  *  L  T  N  C  L  L  N  R  L  L  P  L  V  V  K  E  I  G  V  H  I  L  *  F  T  I  S  R  E  I  T  *  Q  L  Q  E  P  K  I  *  C  L  Y  I  I  I  F  G  C  C  L  A  R  K  R  N  I  *  M  G  Q  A  N  I  G  M  L  :  V  E  I  D  L  I  L  M  R  Q  P  M  I  *  P  A  F  N  R  *  S  S  N  *  K  C  D  I  *  G  R  V  *  R  F  *  I  S  *  R  K  C  G  R  D  S  *  L  N  *  I  T  *  *  L  T  I  F  C  C  Y  V  N  F  K  L  W  I  K  L  R  Q  S  L  A  F  C  S  I  V  C  F  T  L  L  L  G  V  L  N  I  D  *  *  L  *  I  S  K  L  W  T  </second_frame>
            <third_frame>   S  *  V  E  Q  K  *  H  T  S  T  L  Y  G  T  F  F  G  S  Q  I  L  S  *  I  M  A  L  R  R  E  W  N  S  K  A  S  S  Q  *  R  *  *  N  F  I  E  *  S  Q  V  L  S  K  V  L  *  R  F  *  *  N  E  T  S  L  I  G  V  *  I  L  S  *  W  K  W  L  F  *  *  A  S  C  D  *  G  Y  D  V  *  R  F  S  F  L  V  G  K  S  W  G  L  G  S  T  F  A  T  I  S  L  Q  I  A  Y  S  T  D  F  F  L  L  L  *  K  K  L  E  Y  I  F  F  D  S  Q  Y  Q  E  K  *  L  S  N  F  K  S  R  R  F  S  V  C  T  L  *  S  S  V  V  V  S  Q  E  R  E  I  Y  K  W  A  K  Q  I  L  E  C  W :   W  R  S  I  *  Y  *  *  D  N  Q  *  S  N  Q  L  S  I  D  D  P  Q  I  E  S  V  I  F  E  E  E  F  E  D  F  E  *  V  E  E  N  V  E  E  I  A  N  L  I  K  *  L  D  N  *  Q  Y  F  V  V  M  L  I  L  S  Y  G  L  S  *  D  N  L  L  L  F  V  Q  *  Y  V  L  H  F  Y  L  V  Y  *  I  L  I  S  N  Y  E  Y  L  N  C  G  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33864" stop="33417"/>
                    <exon start="33319" stop="33264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GENGIQKLAPSEDSEISLNRVKCFQRYFKDFNEMKQASLEYRSFRSGNGYFSEPHVIEAMMYEDSLSWWANHGVSALLLQQLAYKLLTQPTSSSCCERNWSTYSLIHNIKRNNLATSRAEDLVFVHYNLRLLSRKKEKYINGPSKYWNVGGDRFDIDETTNDLTSFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35022" e_stop="34948"/>
            <exon e_start="33319" e_stop="33013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.853"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.853">
            <gDNA_exon_boundary e_start="35022" e_stop="34948" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34947" i_stop="33320" i_length="1628"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="33319" e_stop="33013" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35022" stop="34948"/>
              <exon start="33319" stop="33013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCGCAAAATCATTCGGTATCTATGAGAGGAATGCGGCCGACAAATTAGCCGCTAGGTTGTTCTACGCATTAGG : GTGGAGATCGATTTGATATTGATGAGACAACCAATGATCTAACCAGCTTTCAATAGATGATCCTCAAATTGAAAGTGTGATATTTGAGGAAGAGTTTGAAGATTTTGAATAAGTTGAAGAAAATGTGGAAGAGATAGCTAACTTAATTAAATAACTTGATAATTGACAATATTTTGTTGTTATGTTAATTTTAAGTTATGGATTAAGTTGAGACAATCTCTTGCTTTTTGTTCAATAGTATGTTTTACACTTTTACTTGGTGTATTGAATATTGATTAGTAATTATGAATATCTAAATTGTGGACAA</gDNA_template>
            <first_frame> Y  R  K  I  I  R  Y  L  *  E  E  C  G  R  Q  I  S  R  *  V  V  L  R  I  R  :  V  E  I  D  L  I  L  M  R  Q  P  M  I  *  P  A  F  N  R  *  S  S  N  *  K  C  D  I  *  G  R  V  *  R  F  *  I  S  *  R  K  C  G  R  D  S  *  L  N  *  I  T  *  *  L  T  I  F  C  C  Y  V  N  F  K  L  W  I  K  L  R  Q  S  L  A  F  C  S  I  V  C  F  T  L  L  L  G  V  L  N  I  D  *  *  L  *  I  S  K  L  W  T  </first_frame>
            <second_frame>  T  A  K  S  F  G  I  Y  E  R  N  A  A  D  K  L  A  A  R  L  F  Y  A  L  G :   W  R  S  I  *  Y  *  *  D  N  Q  *  S  N  Q  L  S  I  D  D  P  Q  I  E  S  V  I  F  E  E  E  F  E  D  F  E  *  V  E  E  N  V  E  E  I  A  N  L  I  K  *  L  D  N  *  Q  Y  F  V  V  M  L  I  L  S  Y  G  L  S  *  D  N  L  L  L  F  V  Q  *  Y  V  L  H  F  Y  L  V  Y  *  I  L  I  S  N  Y  E  Y  L  N  C  G  Q </second_frame>
            <third_frame>   P  Q  N  H  S  V  S  M  R  G  M  R  P  T  N  *  P  L  G  C  S  T  H  *   : G  G  D  R  F  D  I  D  E  T  T  N  D  L  T  S  F  Q  *  M  I  L  K  L  K  V  *  Y  L  R  K  S  L  K  I  L  N  K  L  K  K  M  W  K  R  *  L  T  *  L  N  N  L  I  I  D  N  I  L  L  L  C  *  F  *  V  M  D  *  V  E  T  I  S  C  F  L  F  N  S  M  F  Y  T  F  T  W  C  I  E  Y  *  L  V  I  M  N  I  *  I  V  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45100" PGL_stop="44051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45100" e_stop="44945"/>
            <exon e_start="44356" e_stop="44051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.846"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.846">
            <gDNA_exon_boundary e_start="45100" e_stop="44945" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44944" i_stop="44357" i_length="588"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="44356" e_stop="44051" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45100" stop="44945"/>
              <exon start="44356" stop="44051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCTATTTTAAAATATGGAAAAAGGGTTTAATATATCCCTCAACTTTGTAATGTAGAGCTGATACACCCCTCGTTATAAAAGTGGTTCATATATACCCTAACCGTTATACAAACGGCTCATATATACCCCTGCCGTTACAAAATGGCTCACAT : ATACCCTTCATTTGACGGAAGTTAAAAAATTAGTTTTAAATTTATATTTATTTACTTCTAATTTTTTTTAAAAAAAATTATTTAGGGGTATATATGATTATTCTATCAAAGTTCAAGGTATATTTTAATTTTTTTCATACATAAATTATTTTTTGACTCTTTTATTATAATTATTTGAGTTTCTTATTCTTATTTTATTTTTTTCTTTCATTCCTTAGTTTAAAGAGAAAAAAATTAAAATATTTTTTGTGTGTGTATTATAATTTAATTTCGTATTCGAAGAAAAAATTTGGTCATCTACAATAA</gDNA_template>
            <first_frame> K  L  Y  F  K  I  W  K  K  G  L  I  Y  P  S  T  L  *  C  R  A  D  T  P  L  V  I  K  V  V  H  I  Y  P  N  R  Y  T  N  G  S  Y  I  P  L  P  L  Q  N  G  S  H  :  I  P  F  I  *  R  K  L  K  N  *  F  *  I  Y  I  Y  L  L  L  I  F  F  K  K  N  Y  L  G  V  Y  M  I  I  L  S  K  F  K  V  Y  F  N  F  F  H  T  *  I  I  F  *  L  F  Y  Y  N  Y  L  S  F  L  F  L  F  Y  F  F  L  S  F  L  S  L  K  R  K  K  L  K  Y  F  L  C  V  Y  Y  N  L  I  S  Y  S  K  K  K  F  G  H  L  Q  * </first_frame>
            <second_frame>  N  S  I  L  K  Y  G  K  R  V  *  Y  I  P  Q  L  C  N  V  E  L  I  H  P  S  L  *  K  W  F  I  Y  T  L  T  V  I  Q  T  A  H  I  Y  P  C  R  Y  K  M  A  H  I :   Y  P  S  F  D  G  S  *  K  I  S  F  K  F  I  F  I  Y  F  *  F  F  L  K  K  I  I  *  G  Y  I  *  L  F  Y  Q  S  S  R  Y  I  L  I  F  F  I  H  K  L  F  F  D  S  F  I  I  I  I  *  V  S  Y  S  Y  F  I  F  F  F  H  S  L  V  *  R  E  K  N  *  N  I  F  C  V  C  I  I  I  *  F  R  I  R  R  K  N  L  V  I  Y  N   </second_frame>
            <third_frame>   T  L  F  *  N  M  E  K  G  F  N  I  S  L  N  F  V  M  *  S  *  Y  T  P  R  Y  K  S  G  S  Y  I  P  *  P  L  Y  K  R  L  I  Y  T  P  A  V  T  K  W  L  T   : Y  T  L  H  L  T  E  V  K  K  L  V  L  N  L  Y  L  F  T  S  N  F  F  *  K  K  L  F  R  G  I  Y  D  Y  S  I  K  V  Q  G  I  F  *  F  F  S  Y  I  N  Y  F  L  T  L  L  L  *  L  F  E  F  L  I  L  I  L  F  F  S  F  I  P  *  F  K  E  K  K  I  K  I  F  F  V  C  V  L  *  F  N  F  V  F  E  E  K  I  W  S  S  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="72398" PGL_stop="76448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72398" e_stop="72598"/>
            <exon e_start="76276" e_stop="76444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.648" e_score="0.945"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="72398" e_stop="72598" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.648">
            <gDNA_intron_boundary i_start="72599" i_stop="76275" i_length="3677"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="76276" e_stop="76444" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72398" stop="72598"/>
              <exon start="76276" stop="76444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGTGACGATGGCCGATCAAGATCAATTTTCCCATCTTGGTATTCTTCCATCCATAAAATCTCGACAACTTGAGTGAATTGAAATTCACGCATGCTGTCGATGGCCGATCAGGATCAAGAATTCTCCACTGGATTGCTGTCTCAGTGACGATTTCGATCAAAACCCTAAACCCCAAATCGTAGAATCCTCGATGATTCAG : GGAAGCTGGTGCTTGCTGCCATGCCTGGGTTTCGAAGCTTTTGAGCTAATCATGTTTGGGCATTGCAAAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACCTTTCTTGTTCTTATTACTCACTCATGTAAAATTCAAAAAAAAAA</gDNA_template>
            <first_frame> P  V  T  M  A  D  Q  D  Q  F  S  H  L  G  I  L  P  S  I  K  S  R  Q  L  E  *  I  E  I  H  A  C  C  R  W  P  I  R  I  K  N  S  P  L  D  C  C  L  S  D  D  F  D  Q  N  P  K  P  Q  I  V  E  S  S  M  I  Q  :  G  S  W  C  L  L  P  C  L  G  F  E  A  F  E  L  I  M  F  G  H  C  K  V  Q  L  F  C  H  Y  I  I  P  L  V  K  L  H  D  L  L  P  F  L  F  L  L  L  T  H  V  K  F  K  K  K  </first_frame>
            <second_frame>  R  *  R  W  P  I  K  I  N  F  P  I  L  V  F  F  H  P  *  N  L  D  N  L  S  E  L  K  F  T  H  A  V  D  G  R  S  G  S  R  I  L  H  W  I  A  V  S  V  T  I  S  I  K  T  L  N  P  K  S  *  N  P  R  *  F  R :   E  A  G  A  C  C  H  A  W  V  S  K  L  L  S  *  S  C  L  G  I  A  K  F  S  C  F  V  T  I  S  S  L  W  *  N  Y  M  T  F  Y  L  S  C  S  Y  Y  S  L  M  *  N  S  K  K  K </second_frame>
            <third_frame>   G  D  D  G  R  S  R  S  I  F  P  S  W  Y  S  S  I  H  K  I  S  T  T  *  V  N  *  N  S  R  M  L  S  M  A  D  Q  D  Q  E  F  S  T  G  L  L  S  Q  *  R  F  R  S  K  P  *  T  P  N  R  R  I  L  D  D  S   : G  K  L  V  L  A  A  M  P  G  F  R  S  F  *  A  N  H  V  W  A  L  Q  S  S  V  V  L  S  L  Y  H  P  F  G  E  T  T  *  P  F  T  F  L  V  L  I  T  H  S  C  K  I  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72476" stop="72598"/>
                    <exon start="76276" stop="76443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEIHACCRWPIRIKNSPLDCCLSDDFDQNPKPQIVESSMIQGSWCLLPCLGFEAFELIMFGHCKVQLFCHYIIPLVKLHDLLPFLFLLLTHVKFKKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75683" e_stop="76448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="75683" e_stop="76448" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75683" stop="76448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTGATTGATGCTTGTAGCCACGACAGATTTCAATTCTTCTGAGCTCATCATGTTTTGGATTTATAGAGTTCAGTTTTGTTTCTTTCGCCAAACCACCATTTTGGTGAAATCACACACGACCTTCCCTTTTTCTTATTTTTAGTGCTCTTTCCAATATAACTCAAAAAGGGCAATCGTTCACTCTAGAGCTGAAAAACTGTTTTTTGGCATGGCATCTCATGTGGGTCTCTGAGATTTTTGAAGAAGTACCATTTCTTGGTGTTTTTTCTCTGTCTCTCAAGGCTAACTAATGCTTGCAGCCATGACATGTTTCTAAGCTTTTGGGCTGATTCGTGTTTTGTGTTGAGTTTCTTACCCATCCCTCGGTCGAACCACCCTTTTTGTGATATTACACAAGCACTTTCTCTTTTCTTGTTCTTTATACTCTGCTCCATTTATACACAATGAGGTTTTGGAGGTTTTCATCCATCGATGTTCAATTAAACATGTCTCATGTCAAACTAAAGAACTTCTGCTTGGCACGACACTTCAGGTGGGTCATGAGATTTTGGGAAATGTTCCACTTATTGGTCTTTCTTCTCTGTCTCCTAGGGAAGCTGGTGCTTGCTGCCATGCCTGGGTTTCGAAGCTTTTGAGCTAATCATGTTTGGGCATTGCAAAGTTCAGTTGTTTTGTCACTATATCATCCCTTTGGTGAAACTACATGACCTTTTACCTTTCTTGTTCTTATTACTCACTCATGTAAAATTCAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> A  *  L  M  L  V  A  T  T  D  F  N  S  S  E  L  I  M  F  W  I  Y  R  V  Q  F  C  F  F  R  Q  T  T  I  L  V  K  S  H  T  T  F  P  F  S  Y  F  *  C  S  F  Q  Y  N  S  K  R  A  I  V  H  S  R  A  E  K  L  F  F  G  M  A  S  H  V  G  L  *  D  F  *  R  S  T  I  S  W  C  F  F  S  V  S  Q  G  *  L  M  L  A  A  M  T  C  F  *  A  F  G  L  I  R  V  L  C  *  V  S  Y  P  S  L  G  R  T  T  L  F  V  I  L  H  K  H  F  L  F  S  C  S  L  Y  S  A  P  F  I  H  N  E  V  L  E  V  F  I  H  R  C  S  I  K  H  V  S  C  Q  T  K  E  L  L  L  G  T  T  L  Q  V  G  H  E  I  L  G  N  V  P  L  I  G  L  S  S  L  S  P  R  E  A  G  A  C  C  H  A  W  V  S  K  L  L  S  *  S  C  L  G  I  A  K  F  S  C  F  V  T  I  S  S  L  W  *  N  Y  M  T  F  Y  L  S  C  S  Y  Y  S  L  M  *  N  S  K  K  K  R  </first_frame>
            <second_frame>  P  D  *  C  L  *  P  R  Q  I  S  I  L  L  S  S  S  C  F  G  F  I  E  F  S  F  V  S  F  A  K  P  P  F  W  *  N  H  T  R  P  S  L  F  L  I  F  S  A  L  S  N  I  T  Q  K  G  Q  S  F  T  L  E  L  K  N  C  F  L  A  W  H  L  M  W  V  S  E  I  F  E  E  V  P  F  L  G  V  F  S  L  S  L  K  A  N  *  C  L  Q  P  *  H  V  S  K  L  L  G  *  F  V  F  C  V  E  F  L  T  H  P  S  V  E  P  P  F  L  *  Y  Y  T  S  T  F  S  F  L  V  L  Y  T  L  L  H  L  Y  T  M  R  F  W  R  F  S  S  I  D  V  Q  L  N  M  S  H  V  K  L  K  N  F  C  L  A  R  H  F  R  W  V  M  R  F  W  E  M  F  H  L  L  V  F  L  L  C  L  L  G  K  L  V  L  A  A  M  P  G  F  R  S  F  *  A  N  H  V  W  A  L  Q  S  S  V  V  L  S  L  Y  H  P  F  G  E  T  T  *  P  F  T  F  L  V  L  I  T  H  S  C  K  I  Q  K  K  K  E </second_frame>
            <third_frame>   L  I  D  A  C  S  H  D  R  F  Q  F  F  *  A  H  H  V  L  D  L  *  S  S  V  L  F  L  S  P  N  H  H  F  G  E  I  T  H  D  L  P  F  F  L  F  L  V  L  F  P  I  *  L  K  K  G  N  R  S  L  *  S  *  K  T  V  F  W  H  G  I  S  C  G  S  L  R  F  L  K  K  Y  H  F  L  V  F  F  L  C  L  S  R  L  T  N  A  C  S  H  D  M  F  L  S  F  W  A  D  S  C  F  V  L  S  F  L  P  I  P  R  S  N  H  P  F  C  D  I  T  Q  A  L  S  L  F  L  F  F  I  L  C  S  I  Y  T  Q  *  G  F  G  G  F  H  P  S  M  F  N  *  T  C  L  M  S  N  *  R  T  S  A  W  H  D  T  S  G  G  S  *  D  F  G  K  C  S  T  Y  W  S  F  F  S  V  S  *  G  S  W  C  L  L  P  C  L  G  F  E  A  F  E  L  I  M  F  G  H  C  K  V  Q  L  F  C  H  Y  I  I  P  L  V  K  L  H  D  L  L  P  F  L  F  L  L  L  T  H  V  K  F  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76031" stop="76324"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSYPSLGRTTLFVILHKHFLFSCSLYSAPFIHNEVLEVFIHRCSIKHVSCQTKELLLGTTLQVGHEILGNVPLIGLSSLSPREAGACCHAWVSKLLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75877" stop="76131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTVFWHGISCGSLRFLKKYHFLVFFLCLSRLTNACSHDMFLSFWADSCFVLSFLPIPRSNHPFCDITQALSLFLFFILCSIYTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76071" stop="76319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYTSTFSFLVLYTLLHLYTMRFWRFSSIDVQLNMSHVKLKNFCLARHFRWVMRFWEMFHLLVFLLCLLGKLVLAAMPGFRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="96557" PGL_stop="91505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96557" e_stop="96114"/>
            <exon e_start="94964" e_stop="94852"/>
            <exon e_start="94756" e_stop="94612"/>
            <exon e_start="92226" e_stop="91505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.007" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96557" e_stop="96114" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="96113" i_stop="94965" i_length="1149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94964" e_stop="94852" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.007">
            <gDNA_intron_boundary i_start="94851" i_stop="94757" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94756" e_stop="94612" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.945">
            <gDNA_intron_boundary i_start="94611" i_stop="92227" i_length="2385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92226" e_stop="91505" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96557" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="92063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96548" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96547" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96547" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96547" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96546" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="91513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96541" stop="96114"/>
              <exon start="94964" stop="94877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96540" stop="96114"/>
              <exon start="94964" stop="94921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96511" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="92120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96509" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="92198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96509" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96414" stop="96114"/>
              <exon start="94964" stop="94926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96414" stop="96114"/>
              <exon start="94964" stop="94926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279366" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96308" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="91885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96170" stop="96114"/>
              <exon start="94964" stop="94852"/>
              <exon start="94756" stop="94612"/>
              <exon start="92226" stop="91886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92226" stop="91505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTTTCTGACAAATCGGAATTGAGCAATTATCGGACAAGCGGAGCTGGCAATTCCAGCGAGAGCGACTGGAACTATTCCGCCTCGAAAATTTTTGCCGGAAATTGGGTGTAATCGGCCGGCTTCCCTGCATGTGTACAGATGAAAGTCGCTAAGAGCAACTACTTCTTTTCACATTTTTGCTTTCATTTCCTTTTCACGATCATTCTGCTGGCATTGAATCCAGTTCTGAGCATCCGATTCCCAGATCGGATCCAGGAGGTTCCACAGGATGCCTCTAATCAGCCATTACAAACTGCAGTTTTTGCTCTCGGAAGCTTCTGGAGATCGGAAGCGTCATTTGGCTGCTTAAACGGCATCGTAAGAACCACCGTCGGTTATTCTGGTGGTTCAAAAGCCAATCCTGAGTACAGAAATTTGGGCGACCACGCTGAATCTGTACAG : GTCGAGTATGACCCCCGAGTACTTGGTTTCAGACAACTATTGGAGGTCTTCTGGTCTAGCCATGATTCCAGGCAAGTCTTTGGGCAAGGTCCTGATGTGGGTAACCAGTACAG : GTCTATTATTTTCACAAGCGGCACTGAGGAATCCAGATTGGCTGCTGTTAGCAAAGAAAGAGAACAATCAAAGTCAAAGAGCAGCATTGTTACAACTCAAATTCAACAGCTTGAAGCTTTTTATCCTGCAGAGCCTGAACATCAG : AAATTTGAGCTCAAGCGGAATCCCTTCCTACTTCAATTGATGGGAAACTTGCCTGAGGAGGAGCTTGAGAGATCAACACTGGCTACAAAACTAAATGGCTATGCAGCAGAGCTTTGTCCATCGAGAATCCAAAAGCGGATTGATGGAAAGATCAATGATATTATCAAGAAAGGTTGGCCCATTCTCAAAGAAGTTTAGGTATACATCTCAAGGTTATATGAGATCGTGCAGACCTTCGTTAATGTGTAGAAACTGCGAGTTTCGTTTGCTTAAGTAATGTCTTGCAGATGACAGAATACCTTCATCCGAATTTATCCTACATCATAGATTCTGAAAGTCTGAATAGCGAGCAGAGACCTTTTTACAGAGATCAATCAAAATTTGTTTGTACAATCAGAATAGGTTGATTGGACTAGACTTAGCTGCTGCAGCTGGTGGAATAAATCTACCGGAGCTTCCGCTTTCCCTTTTTTTGCAGGGATTAATCAAAATTTTTTGTACTATCTTAATGTTCTGTATAGGTAATAGGCTGATTGCACCAAAACTGAACATTATTGTGATGTAAGGCTGTGGGACCTTAAAATCATGTTGTTGTAGCACTTTATAATTCTATGTATGCTTGGCTACCCCTTTTTCATGTTGTAGTAGTTGCAATTTGCAAATACTATTTAGCTGATTGGATTTTTCTTTTTATAAATTTGGCCACTTCTCGGAGGGTTTAA</gDNA_template>
            <first_frame> V  F  S  D  K  S  E  L  S  N  Y  R  T  S  G  A  G  N  S  S  E  S  D  W  N  Y  S  A  S  K  I  F  A  G  N  W  V  *  S  A  G  F  P  A  C  V  Q  M  K  V  A  K  S  N  Y  F  F  S  H  F  C  F  H  F  L  F  T  I  I  L  L  A  L  N  P  V  L  S  I  R  F  P  D  R  I  Q  E  V  P  Q  D  A  S  N  Q  P  L  Q  T  A  V  F  A  L  G  S  F  W  R  S  E  A  S  F  G  C  L  N  G  I  V  R  T  T  V  G  Y  S  G  G  S  K  A  N  P  E  Y  R  N  L  G  D  H  A  E  S  V  Q  :  V  E  Y  D  P  R  V  L  G  F  R  Q  L  L  E  V  F  W  S  S  H  D  S  R  Q  V  F  G  Q  G  P  D  V  G  N  Q  Y  R :   S  I  I  F  T  S  G  T  E  E  S  R  L  A  A  V  S  K  E  R  E  Q  S  K  S  K  S  S  I  V  T  T  Q  I  Q  Q  L  E  A  F  Y  P  A  E  P  E  H  Q  :  K  F  E  L  K  R  N  P  F  L  L  Q  L  M  G  N  L  P  E  E  E  L  E  R  S  T  L  A  T  K  L  N  G  Y  A  A  E  L  C  P  S  R  I  Q  K  R  I  D  G  K  I  N  D  I  I  K  K  G  W  P  I  L  K  E  V  *  V  Y  I  S  R  L  Y  E  I  V  Q  T  F  V  N  V  *  K  L  R  V  S  F  A  *  V  M  S  C  R  *  Q  N  T  F  I  R  I  Y  P  T  S  *  I  L  K  V  *  I  A  S  R  D  L  F  T  E  I  N  Q  N  L  F  V  Q  S  E  *  V  D  W  T  R  L  S  C  C  S  W  W  N  K  S  T  G  A  S  A  F  P  F  F  A  G  I  N  Q  N  F  L  Y  Y  L  N  V  L  Y  R  *  *  A  D  C  T  K  T  E  H  Y  C  D  V  R  L  W  D  L  K  I  M  L  L  *  H  F  I  I  L  C  M  L  G  Y  P  F  F  M  L  *  *  L  Q  F  A  N  T  I  *  L  I  G  F  F  F  L  *  I  W  P  L  L  G  G  F   </first_frame>
            <second_frame>  Y  F  L  T  N  R  N  *  A  I  I  G  Q  A  E  L  A  I  P  A  R  A  T  G  T  I  P  P  R  K  F  L  P  E  I  G  C  N  R  P  A  S  L  H  V  Y  R  *  K  S  L  R  A  T  T  S  F  H  I  F  A  F  I  S  F  S  R  S  F  C  W  H  *  I  Q  F  *  A  S  D  S  Q  I  G  S  R  R  F  H  R  M  P  L  I  S  H  Y  K  L  Q  F  L  L  S  E  A  S  G  D  R  K  R  H  L  A  A  *  T  A  S  *  E  P  P  S  V  I  L  V  V  Q  K  P  I  L  S  T  E  I  W  A  T  T  L  N  L  Y  R :   S  S  M  T  P  E  Y  L  V  S  D  N  Y  W  R  S  S  G  L  A  M  I  P  G  K  S  L  G  K  V  L  M  W  V  T  S  T   : G  L  L  F  S  Q  A  A  L  R  N  P  D  W  L  L  L  A  K  K  E  N  N  Q  S  Q  R  A  A  L  L  Q  L  K  F  N  S  L  K  L  F  I  L  Q  S  L  N  I  R :   N  L  S  S  S  G  I  P  S  Y  F  N  *  W  E  T  C  L  R  R  S  L  R  D  Q  H  W  L  Q  N  *  M  A  M  Q  Q  S  F  V  H  R  E  S  K  S  G  L  M  E  R  S  M  I  L  S  R  K  V  G  P  F  S  K  K  F  R  Y  T  S  Q  G  Y  M  R  S  C  R  P  S  L  M  C  R  N  C  E  F  R  L  L  K  *  C  L  A  D  D  R  I  P  S  S  E  F  I  L  H  H  R  F  *  K  S  E  *  R  A  E  T  F  L  Q  R  S  I  K  I  C  L  Y  N  Q  N  R  L  I  G  L  D  L  A  A  A  A  G  G  I  N  L  P  E  L  P  L  S  L  F  L  Q  G  L  I  K  I  F  C  T  I  L  M  F  C  I  G  N  R  L  I  A  P  K  L  N  I  I  V  M  *  G  C  G  T  L  K  S  C  C  C  S  T  L  *  F  Y  V  C  L  A  T  P  F  S  C  C  S  S  C  N  L  Q  I  L  F  S  *  L  D  F  S  F  Y  K  F  G  H  F  S  E  G  L  </second_frame>
            <third_frame>   I  F  *  Q  I  G  I  E  Q  L  S  D  K  R  S  W  Q  F  Q  R  E  R  L  E  L  F  R  L  E  N  F  C  R  K  L  G  V  I  G  R  L  P  C  M  C  T  D  E  S  R  *  E  Q  L  L  L  F  T  F  L  L  S  F  P  F  H  D  H  S  A  G  I  E  S  S  S  E  H  P  I  P  R  S  D  P  G  G  S  T  G  C  L  *  S  A  I  T  N  C  S  F  C  S  R  K  L  L  E  I  G  S  V  I  W  L  L  K  R  H  R  K  N  H  R  R  L  F  W  W  F  K  S  Q  S  *  V  Q  K  F  G  R  P  R  *  I  C  T   : G  R  V  *  P  P  S  T  W  F  Q  T  T  I  G  G  L  L  V  *  P  *  F  Q  A  S  L  W  A  R  S  *  C  G  *  P  V  Q  :  V  Y  Y  F  H  K  R  H  *  G  I  Q  I  G  C  C  *  Q  R  K  R  T  I  K  V  K  E  Q  H  C  Y  N  S  N  S  T  A  *  S  F  L  S  C  R  A  *  T  S   : E  I  *  A  Q  A  E  S  L  P  T  S  I  D  G  K  L  A  *  G  G  A  *  E  I  N  T  G  Y  K  T  K  W  L  C  S  R  A  L  S  I  E  N  P  K  A  D  *  W  K  D  Q  *  Y  Y  Q  E  R  L  A  H  S  Q  R  S  L  G  I  H  L  K  V  I  *  D  R  A  D  L  R  *  C  V  E  T  A  S  F  V  C  L  S  N  V  L  Q  M  T  E  Y  L  H  P  N  L  S  Y  I  I  D  S  E  S  L  N  S  E  Q  R  P  F  Y  R  D  Q  S  K  F  V  C  T  I  R  I  G  *  L  D  *  T  *  L  L  Q  L  V  E  *  I  Y  R  S  F  R  F  P  F  F  C  R  D  *  S  K  F  F  V  L  S  *  C  S  V  *  V  I  G  *  L  H  Q  N  *  T  L  L  *  C  K  A  V  G  P  *  N  H  V  V  V  A  L  Y  N  S  M  Y  A  W  L  P  L  F  H  V  V  V  V  A  I  C  K  Y  Y  L  A  D  W  I  F  L  F  I  N  L  A  T  S  R  R  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96443" stop="96114"/>
                    <exon start="94964" stop="94852"/>
                    <exon start="94756" stop="94612"/>
                    <exon start="92226" stop="92029"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGFPACVQMKVAKSNYFFSHFCFHFLFTIILLALNPVLSIRFPDRIQEVPQDASNQPLQTAVFALGSFWRSEASFGCLNGIVRTTVGYSGGSKANPEYRNLGDHAESVQVEYDPRVLGFRQLLEVFWSSHDSRQVFGQGPDVGNQYRSIIFTSGTEESRLAAVSKEREQSKSKSSIVTTQIQQLEAFYPAEPEHQKFELKRNPFLLQLMGNLPEEELERSTLATKLNGYAAELCPSRIQKRIDGKINDIIKKGWPILKEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91880" stop="91662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAETFLQRSIKICLYNQNRLIGLDLAAAAGGINLPELPLSLFLQGLIKIFCTILMFCIGNRLIAPKLNIIVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="98809" PGL_stop="103568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98809" e_stop="99089"/>
            <exon e_start="102014" e_stop="102066"/>
            <exon e_start="102139" e_stop="102205"/>
            <exon e_start="102279" e_stop="102335"/>
            <exon e_start="102820" e_stop="103145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98809" e_stop="99089" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102014" e_stop="102066" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102139" e_stop="102205" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.998">
            <gDNA_intron_boundary i_start="102206" i_stop="102278" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102279" e_stop="102335" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102820" e_stop="103145" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98809" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552347" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98849" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98849" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98849" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98850" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98850" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98851" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="102989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98855" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98865" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="102984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98876" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99035" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102159" stop="102205"/>
              <exon start="102279" stop="102335"/>
              <exon start="102820" stop="103100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102848" stop="103088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCATTGTGGTTAAGCATTTGTTTAGACTCTGTCACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GGAAAAGGTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCACCCTGGGTGCCCCAA</gDNA_template>
            <first_frame> *  S  L  W  L  S  I  C  L  D  S  V  T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   E  K  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F  T  L  G  A  P  </first_frame>
            <second_frame>  D  H  C  G  *  A  F  V  *  T  L  S  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  K  R  Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  P  W  V  P  Q </second_frame>
            <third_frame>   I  I  V  V  K  H  L  F  R  L  C  H  S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  G  K  G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  H  P  G  C  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98910" stop="99089"/>
                    <exon start="102014" stop="102066"/>
                    <exon start="102139" stop="102205"/>
                    <exon start="102279" stop="102335"/>
                    <exon start="102820" stop="102882"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKGKGTSLGVGRGRAIAMRAKAQAAGRGAPPGRGTVPPVRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98845" e_stop="99089"/>
            <exon e_start="102014" e_stop="102066"/>
            <exon e_start="102139" e_stop="102205"/>
            <exon e_start="102286" e_stop="102335"/>
            <exon e_start="102820" e_stop="103088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98845" e_stop="99089" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99090" i_stop="102013" i_length="2924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102014" e_stop="102066" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="102067" i_stop="102138" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102139" e_stop="102205" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.820">
            <gDNA_intron_boundary i_start="102206" i_stop="102285" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102286" e_stop="102335" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102336" i_stop="102819" i_length="484"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="102820" e_stop="103088" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98845" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102286" stop="102335"/>
              <exon start="102820" stop="103002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98845" stop="99089"/>
              <exon start="102014" stop="102066"/>
              <exon start="102139" stop="102205"/>
              <exon start="102286" stop="102335"/>
              <exon start="102820" stop="102910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102848" stop="103088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGTAGAAGAAGCTGCACTCCCCACTGGTCACTAACCAGCAACGTTAGGTTTACTGAGAAGTAAGGAAAGCGGGAGGAATCAGCCATGAGTCGGAGCTTGGGCATACCGGTGAAGCTTCTACATGAAGCGACAGGGCATATAGTGACAGTAGAGATGAAGAGTGGAGAGCTGTACAGAGGAAGTATGGTGGAGTGCGAGGATAACTGGAATTGCCAACTCGAGAGCATCACTTACACTGCCAAA : GATGGGAGAGTGTCGCAACTAGAGCATGTTTTCATTCGAGGCAGCAAAGTCAG : GTTCATGATAATTCCTGATATGCTTAAGAATGCTCCCATGTTCAAGCGGCTAGAAGCAAGAATCAAG : GTACATCACTTGGTGTTGGTCGGGGACGTGCTATTGCTATGCGAGCTAAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACC</gDNA_template>
            <first_frame> T  V  E  E  A  A  L  P  T  G  H  *  P  A  T  L  G  L  L  R  S  K  E  S  G  R  N  Q  P  *  V  G  A  W  A  Y  R  *  S  F  Y  M  K  R  Q  G  I  *  *  Q  *  R  *  R  V  E  S  C  T  E  E  V  W  W  S  A  R  I  T  G  I  A  N  S  R  A  S  L  T  L  P  K :   M  G  E  C  R  N  *  S  M  F  S  F  E  A  A  K  S   : G  S  *  *  F  L  I  C  L  R  M  L  P  C  S  S  G  *  K  Q  E  S  R :   Y  I  T  W  C  W  S  G  T  C  Y  C  Y  A  S  *   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T </first_frame>
            <second_frame>  Q  *  K  K  L  H  S  P  L  V  T  N  Q  Q  R  *  V  Y  *  E  V  R  K  A  G  G  I  S  H  E  S  E  L  G  H  T  G  E  A  S  T  *  S  D  R  A  Y  S  D  S  R  D  E  E  W  R  A  V  Q  R  K  Y  G  G  V  R  G  *  L  E  L  P  T  R  E  H  H  L  H  C  Q   : R  W  E  S  V  A  T  R  A  C  F  H  S  R  Q  Q  S  Q  :  V  H  D  N  S  *  Y  A  *  E  C  S  H  V  Q  A  A  R  S  K  N  Q   : G  T  S  L  G  V  G  R  G  R  A  I  A  M  R  A  K  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S   </second_frame>
            <third_frame>   S  R  R  S  C  T  P  H  W  S  L  T  S  N  V  R  F  T  E  K  *  G  K  R  E  E  S  A  M  S  R  S  L  G  I  P  V  K  L  L  H  E  A  T  G  H  I  V  T  V  E  M  K  S  G  E  L  Y  R  G  S  M  V  E  C  E  D  N  W  N  C  Q  L  E  S  I  T  Y  T  A  K  :  D  G  R  V  S  Q  L  E  H  V  F  I  R  G  S  K  V  R :   F  M  I  I  P  D  M  L  K  N  A  P  M  F  K  R  L  E  A  R  I  K  :  V  H  H  L  V  L  V  G  D  V  L  L  L  C  E  L  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98910" stop="99089"/>
                    <exon start="102014" stop="102066"/>
                    <exon start="102139" stop="102205"/>
                    <exon start="102286" stop="102335"/>
                    <exon start="102820" stop="102874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKREESAMSRSLGIPVKLLHEATGHIVTVEMKSGELYRGSMVECEDNWNCQLESITYTAKDGRVSQLEHVFIRGSKVRFMIIPDMLKNAPMFKRLEARIKVHHLVLVGDVLLLCELKLRLLVVEHHLVGVLCHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="102745" e_stop="102749"/>
            <exon e_start="102820" e_stop="103130"/>
            <exon e_start="103549" e_stop="103568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="0.600"/>
          <exon-intron don_prob="0.000" acc_prob="0.445" e_score="0.977"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="102745" e_stop="102749" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102750" i_stop="102819" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="102820" e_stop="103130" e_length="311"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.445">
            <gDNA_intron_boundary i_start="103131" i_stop="103548" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="0.550">
            <gDNA_exon_boundary e_start="103549" e_stop="103568" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102745" stop="102749"/>
              <exon start="102820" stop="103130"/>
              <exon start="103549" stop="103568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102848" stop="103088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAA : GCTCAGGCTGCTGGTCGTGGAGCACCACCTGGTCGGGGTACTGTGCCACCTGTAAGAAGATGATTGCTTGATGCAGGATTTTATTTTATCTGGTTTAGCAATCGTAAAAATTCAGTGTAAGAATGTTGGAGTAGATTTCTAAGGTTGGTTCCTTGGTCTAATAGTCTGAGTTACATTCATCTACTTTGTAACTTAACCTTTTTCACATACGACTAGAGAATGCTGGAATATGAGTGCTTTTCAAGTTGCCTCTGTGCTTGTACTTCACCTGTGTTAAGAAATATGGATTAGTCCAGTTCTTCACTTTTTCA : GAGGAGAATAAGTGAATAAA</gDNA_template>
            <first_frame> H  K :   L  R  L  L  V  V  E  H  H  L  V  G  V  L  C  H  L  *  E  D  D  C  L  M  Q  D  F  I  L  S  G  L  A  I  V  K  I  Q  C  K  N  V  G  V  D  F  *  G  W  F  L  G  L  I  V  *  V  T  F  I  Y  F  V  T  *  P  F  S  H  T  T  R  E  C  W  N  M  S  A  F  Q  V  A  S  V  L  V  L  H  L  C  *  E  I  W  I  S  P  V  L  H  F  F   : R  G  E  *  V  N  K </first_frame>
            <second_frame>  I   : S  S  G  C  W  S  W  S  T  T  W  S  G  Y  C  A  T  C  K  K  M  I  A  *  C  R  I  L  F  Y  L  V  *  Q  S  *  K  F  S  V  R  M  L  E  *  I  S  K  V  G  S  L  V  *  *  S  E  L  H  S  S  T  L  *  L  N  L  F  H  I  R  L  E  N  A  G  I  *  V  L  F  K  L  P  L  C  L  Y  F  T  C  V  K  K  Y  G  L  V  Q  F  F  T  F  S  :  E  E  N  K  *  I   </second_frame>
            <third_frame>   *  :  A  Q  A  A  G  R  G  A  P  P  G  R  G  T  V  P  P  V  R  R  *  L  L  D  A  G  F  Y  F  I  W  F  S  N  R  K  N  S  V  *  E  C  W  S  R  F  L  R  L  V  P  W  S  N  S  L  S  Y  I  H  L  L  C  N  L  T  F  F  T  Y  D  *  R  M  L  E  Y  E  C  F  S  S  C  L  C  A  C  T  S  P  V  L  R  N  M  D  *  S  S  S  S  L  F  Q :   R  R  I  S  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0130B04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="108308" PGL_stop="107932"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108308" e_stop="107932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108308" e_stop="107932" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108308" stop="107932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341968" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTAATAATTTCTCTTTCTAAAACAACAACAAAATGGGTTTAAAGAAAACAAGTAGCAGCAAACAACAAACAGCAGCTTTGAAACAAATGATCAAAAGATGTTCTAGTTTTGGAAAAAATGAGAATAATGGTTTCCCACATGATGTTCCAAAAGGACATTTTGTTGTGTACGTTGGAGAAAATAGAAGTAGATATATAATACCTATTTCTTGGTTAACATATCCTCAATTTCAAAATTTGCTTCAAAGAGCTGAAGAAGAATTTGGATTTAGTCATGATATGGGCATTACTATTCCTTGTCATGAACATGATTTTTGTTCACTTATTTCAATGTTTAGATGAAACAACAAAATATAATCTTCCTTTTTCCTTTT</gDNA_template>
            <first_frame> N  I  N  N  F  S  F  *  N  N  N  K  M  G  L  K  K  T  S  S  S  K  Q  Q  T  A  A  L  K  Q  M  I  K  R  C  S  S  F  G  K  N  E  N  N  G  F  P  H  D  V  P  K  G  H  F  V  V  Y  V  G  E  N  R  S  R  Y  I  I  P  I  S  W  L  T  Y  P  Q  F  Q  N  L  L  Q  R  A  E  E  E  F  G  F  S  H  D  M  G  I  T  I  P  C  H  E  H  D  F  C  S  L  I  S  M  F  R  *  N  N  K  I  *  S  S  F  F  L   </first_frame>
            <second_frame>  I  L  I  I  S  L  S  K  T  T  T  K  W  V  *  R  K  Q  V  A  A  N  N  K  Q  Q  L  *  N  K  *  S  K  D  V  L  V  L  E  K  M  R  I  M  V  S  H  M  M  F  Q  K  D  I  L  L  C  T  L  E  K  I  E  V  D  I  *  Y  L  F  L  G  *  H  I  L  N  F  K  I  C  F  K  E  L  K  K  N  L  D  L  V  M  I  W  A  L  L  F  L  V  M  N  M  I  F  V  H  L  F  Q  C  L  D  E  T  T  K  Y  N  L  P  F  S  F  </second_frame>
            <third_frame>   Y  *  *  F  L  F  L  K  Q  Q  Q  N  G  F  K  E  N  K  *  Q  Q  T  T  N  S  S  F  E  T  N  D  Q  K  M  F  *  F  W  K  K  *  E  *  W  F  P  T  *  C  S  K  R  T  F  C  C  V  R  W  R  K  *  K  *  I  Y  N  T  Y  F  L  V  N  I  S  S  I  S  K  F  A  S  K  S  *  R  R  I  W  I  *  S  *  Y  G  H  Y  Y  S  L  S  *  T  *  F  L  F  T  Y  F  N  V  *  M  K  Q  Q  N  I  I  F  L  F  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0130B04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108284" stop="107964"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNNKMGLKKTSSSKQQTAALKQMIKRCSSFGKNENNGFPHDVPKGHFVVYVGENRSRYIIPISWLTYPQFQNLLQRAEEEFGFSHDMGITIPCHEHDFCSLISMFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 143 chains have been computed
$ 
$ memory statistics:
$ 252144 bytes spliced alignments in total
$ 48 spliced alignments have been stored
$ 5253 bytes was the average size of a spliced alignment
$ 15120 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1890 bytes was the average size of a predicted gene location
$ 5 megabytes was the average size of the backtrace matrix
$ 196 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:22:39
-->
