<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:02:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395276" ref_strand="+" ref_description="SGN-E395276 [TUS-14-N1](-)">
      <seq>tttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctttctgagaaaggaaaaaaaaaagagattcccattctcatttgttgttcttgtactgtaatactgtgatttaactaaagatatagagtgcaggtgtgtcatctttcctttcatgttttagatattatcgcgatgataattattgaaacagtaagttttctatatgtgactgaactaaagctttagttcgacgcattatgattgattttaaataaagatgaggtttagtacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="-" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="11809" stop="7478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11509" g_stop="11430" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8502" g_stop="8342" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="241" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8200" g_stop="7777" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="665" r_length="424" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="678"/>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="-" ref_id="SGN-E395276" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11509" e_stop="11430"/>
          <exon e_start="8502" e_stop="8342"/>
          <exon e_start="8200" e_stop="7777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG</genome_strand>
        <mrna_strand>TTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTTTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACGCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349621" ref_strand="+" ref_description="SGN-E349621 [cTOS-1-J8]">
      <seq>tcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaaaggaaaaaaaaaagagattcccattctcatttgttgttcttgtactgtaatactgtgatttaactaaagatatagagtgcaggtgtgtcatctttcctttcatgttttagatattatcgcgatgataattattgaaacagtaagttttctatatgtgactgaactaaagctttagttcgacccattatgattgattttaaataaagatgaggtttagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="-" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="11792" stop="7478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11492" g_stop="11430" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8502" g_stop="8342" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="224" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8200" g_stop="7777" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="648" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="-" ref_id="SGN-E349621" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11492" e_stop="11430"/>
          <exon e_start="8502" e_stop="8342"/>
          <exon e_start="8200" e_stop="7777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG</genome_strand>
        <mrna_strand>TCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433890" ref_strand="-" ref_description="SGN-E433890 [STM-59-K21]">
      <seq>ggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagaccgttggtgcagaaatttccacaattgaaggtcgtgatggagcatgttaccaccattgatgctgttaagtttgttgaatcttgcactgaaggatttgttgcagcaactgtcaccccacaacatcttgttttgaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcgcttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagagtgttcttgtggatgtgctggtatttacaatgcacctgtagccttgtcagtatatgcgaaggtgtttgaaaaggaaaatgcactcgacaagcttgaagcatttactagcttcaatggaccagatttttatgggcttcctaggaacaactcaaagattaagttgagtaagacgccatggaaggtacccgaatccttttcttatgcatcaggagatattattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaatcatttgtcattcttgtactgtaatattgtgattcaaccaaagatatagactgtaggtgtatcatcttttctttcatgttgattagatattatcacgatgataatatcctttcagctaataaattatgnagacaataagctttgcacgctcccccaattaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="-" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="12102" stop="7597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11802" g_stop="11663" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11662" i_stop="11547" i_length="116">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11546" g_stop="11430" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="257" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8502" g_stop="8342" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="418" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141">
            <donor d_prob="0.827" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8200" g_stop="7864" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="730" r_length="312" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="-" ref_id="SGN-E433890" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11802" e_stop="11663"/>
          <exon e_start="11546" e_stop="11430"/>
          <exon e_start="8502" e_stop="8342"/>
          <exon e_start="8200" e_stop="7864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTT--TTAGATATTATCGCGATGATAATTATTGAAACA</genome_strand>
        <mrna_strand>GGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCGTTGGTGCAGAAATTTCCACAATTGAAGGTCGTGATGGAGCATGTTACCACCATTGATGCTGTTAAGTTTGTTGAATCTTGCACTGAAG....................................................................................................................GATTTGTTGCAGCAACTGTCACCCCACAACATCTTGTTTTGAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCGCTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAGTGTTCTTGTGGATGTGCTGGTATTTACAATGCACCTGTAGCCTTGTCAGTATATGCGAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTCGACAAGCTTGAAGCATTTACTAGCTTCAATGGACCAGATTTTTATGGGCTTCCTAGGAACAACTCAAAGATTAAGTTGAGTAAGACGCCATGGAAGGTACCCGAATCCTTTTCTTATGCATCAGGAGATATTATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCT------------------GAGA-----A---TCATTTGTCATTCTTGTACTGTAATATTGTGATTCAACCAAAGATATAGACTGTAGGTGTATCATCTTTTCTTTCATGTTGATTAGATATTATCACGATGATAA-TATCCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395277" ref_strand="+" ref_description="SGN-E395277 [TUS-14-N1]">
      <seq>gttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaatggaccagacttttatgggcttccgaggaacaactcaaagattaagttgagtaagacaccatggaaggtacccgaatccttttcatatgcatcaggagatataattcccatgtttgctggtgaaatgctcgactggttgccggctcctctctgagaaaggaaaaaaaaaagagattcccattctcatttnngtgtcttgtactgtaatactgtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="-" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="12128" stop="7642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11828" g_stop="11663" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11662" i_stop="11547" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11546" g_stop="11430" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="283" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8502" g_stop="8342" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="444" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8200" g_stop="7942" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="703" r_length="259" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="-" ref_id="SGN-E395277" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11828" e_stop="11663"/>
          <exon e_start="11546" e_stop="11430"/>
          <exon e_start="8502" e_stop="8342"/>
          <exon e_start="8200" e_stop="7942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTT</genome_strand>
        <mrna_strand>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTNNGTGTCTTGTACTGTAATACTGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202102" ref_strand="+" ref_description="SGN-E202102 [cLEC-7-I1]">
      <seq>ttcatggagaggttactaatcctgaggttgacatgtttgatagagaaaaggtattcattgaaacggttctaagacctttggtgcagaaatttccacgattgaaggtcgtgatggagcatgtcaccaccatggatgctgttaagtttgttgaatcttgcagtgaaggatttgttgcagcgactgtcaccccacaacatcttgttttaaacaggaattctctcttccaagggggcttacaaccgcataattactgccttccagtcctcaaaagagagatccacagggaggcacttgtgtcagctgtaacaagtggaagtaaaagattttttcttgggactgatagtgctcctcatgatagacgaagaaaagaatgttcttgtggatgtgctggtatttacaatgctcctgtagccttatcagtatatgcaaaggtgtttgaaaaggaaaatgcacttgacaagctcgaagcatttaccagcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="-" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="12127" stop="7859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11827" g_stop="11663" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11662" i_stop="11547" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11546" g_stop="11430" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="282" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8502" g_stop="8342" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="443" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8200" g_stop="8159" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="485" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="-" ref_id="SGN-E202102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11827" e_stop="11663"/>
          <exon e_start="11546" e_stop="11430"/>
          <exon e_start="8502" e_stop="8342"/>
          <exon e_start="8200" e_stop="8159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAGGTAATCTTTTCAACTTTATCCACCTTTTTGAACTTAAAGTCTTCTTGTCAGATGAAAGAACTTCATTGACCTTCCTTTTTCAAATGCTAATTTAACCTTTCTATCATTCTTTAAAGGATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACAGTAATATTCTTTATCCTTTCATATTGATGCTCCGATTCTCTTCTATCGCTTGGTGTTTGTCTATCGGTTGCAAGAACAATAATGAAGTAACATTACTTTTAATTTTGAAAAACCGACTAGGATTCTTTGGTTAACCACCTGTAGTGACTACAAGGGCATGTAGACCTTGTTTGGTTCTACAAAGGGGACAAGAACTTCATTTTTCTCATGCATAATGTATTTACCATTAACCTCCACTTGTTTGGTTCAACTCAAGTAAAGTGGAAGAGGTTGATTTCCTTATTTCCAATCTTAGATGGTTTTGAAAAGTTGAGGAATTGCATACTTACACTTGCATTTTAACAAACAAGGTTAATTATATTCCTTCCAGTGTGATAGGTAACTTGAGCAAATTAAGTCTACACTGCTAGCATTGTATGCTTCTATTTCATACATGAACCTGAATAGAATTACATTCAGTATCCTAATCAACATAAGCTGGACAATATACTAACTCTATCAACAAAAGGAAACCATATCGAGTTCAAGGCCAGATGCTTAGTTCTACTTTTTTGTTGGGAAGTTTATTTTTGTCCATTCTTGGAGCTGACTCTTCCTACTTTTGTAATTATGCATCTGCTAGATGCTTTGTTTATCAATACACCATTTATTTCATCAAAAATAAAATAAAATATCAAGTTGAAGCAACAAGCTTTACATTCTAGTATGCAGGGATCCCGATGGGTTTGTTGATGTTACAGTTCTTACCTTCTCCAGCAAGCCTTTTATTGCACTCTCCAACTCTAATTTCTCCTCAGTAGTAATCTTACCGTAGCATTTTTTCCATGATTGATTTCATCCCCTTCAGCTTCTGCTTGATTAGTTGTACCTGTGACTTCCCCTTACCTGCTTTCAGCAAGGAGAGTGGAGTGACAGAGTTGAAGGGATAAGAGCTTAAAGTTAAATTTACAGCACCAAAAGGACTTTGATGTACTTATTCTCTGAAGGCATTTTCAGCATCTGAACAGTGCTTGAATCAGATTACACTTAAATGTTGCCATCCTCTGGGATTATGATGGCAGACTTTTTGTCACCCAGCCAATCCTCACAGAACGACTTCAACATTGAAATTTTGCAACTTTTTAAGTATACACTTCAATCTTCCTACCCCATCTTCTACACAAATTACCTACCCCGTGTGAAGCCTGTTGAAGAATTTCGCATTCCTTTCGCAGATTCTCCTCATCAATATTGAGTCTGCTAGTGATTGACTGCTTTACTCTACTATCGTGAACCATCTATCTTCATTGTTGCTAATATCATATAACTCGAATGACTCATCTCCTGAAACAAAAAAAGTTCTCTTCTTCATAAGGAGTGAAAGAAACAAAAGAGAAATTGCACATTTTTCAAGAGAGAGCACTGTTTTAATATAAGTTCTTAATCAAACTTTTCAGCAGAATGGTGTTGCATGATTTAACTGTAAATAGACATCTTTCTTGCTCCTCCAATAAATGTTGTCCTTCTTGTCTGTGCGTAAGGAGTAAGTCCCAAGATAAAGAGACTGCAGTTTCTATTAACTACCCAACCATTGCAATGCCTTCTAAAGATGATGTTCAAGCCATTTTTGAGTAATAATCTGTTACGCATTCTGATTGGCTGCCAGAGTGGATACACACTTGAGAGGGGTACGGCCATTCCAAAAAGCTGATTTTCTGCCATTTCCCAACTTGAAAGATGTTGTTTCCTAGGAATTCGTCTAAAGAAAGTCCAGATGCTTTTCCCGACAGAGAAACCATACAAGAGCTAGTAAGCTTTGTTATCCACAGGTGTTGCATACCATATTTGGTCTCGATGACTTACTCCGTTTTGCATTCTCACCTTTTGTGAATCTCCATGACCATTTGTTTAAGAGGCTATCATTGTGTGCTTTCAGATTCCGTACTCCCAGGCCTCCAGATTTTTATCTTTTTGGACAGCTTCCCACTTAGCATGATTAAAAGCTTTCTTGTCCCTGTTTTCATTTCAGATTCGACGAATCTTATCAATTTCTTGGCCAGATATGTAGGAATAAGGAATAAAGAGATTGTGTAAGTGGGAAGTGAGTCCAAAACACTATTTGTGAAAACTAATCTGCCTTTGCTTATATTTCGTTAAATCAAATCTAAAAGCCTATAATCTTTTCGGAATATGGCATTTTGATTTTGTTGTATGGATTACTGTCATAACAAAGAAGAAATGAATTAAACAGCTATTGAGCCATCTACCCTGAATTTTGAAAGTTGGGTAGAAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTGGAATAATTTGTTGAAAGTTTGTTCTTCTACCTGATATTTTCTTACCTCTTTGTAAGAGTTATGACTACCCTGAAATTTTGAAAGTTAGGTAAAAACTGTAGAGCTATATTTGCCTGTAATTGACCCTCTTTTTGTGTAGAATAATTTGTTGAAAGTTTCTTCTTTACCTGATTTCTTTTACCTCTGTGTAAGAGATGAAAGTTTTAGTCTTACTGATGCTAATGTGTCACGAATCACTACTTGATCAGGCTTTCTTTGATTTGCTAGTTCCATCCATTGCCTTTTATTTTCCTAGACATGTGAACTTGTTGAAAATTTGATGCAAACGGTGCTGTGAATGTGCTAAAAAAAGGAAATGAATGTATGGCATGATTGTCCTTGTTGAAACAAGGTGCTCTTTTTTCTTATAAGAATTTGCCAATTTGGGGAGCATGTTTAATGAGACTTGGAAAAGTACCAAGTGCGTGAGAAAAAACTCATCTTTATTAATATATTCATTATTCGCATAATTACAAGATCTATTGCACTAATCTTGTCCCCTTACTCCTACTACTTTTCTCTTTTCTCTTGTTCACTTGGTATAAATTTTAATCTAAGCAAGATTGCTTTGAATAACACAGGGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAGGTAATTGCAATAGATATCTACAGCGCTTCTCATGTTGAACTCATCCATGTTATAATGTTTCTAATTACTTGGGAAAGGTTCATTAGTTTTAGCAGCTATCGCTACAAGTCAATGACTTAGATTTGGTTGTCTGCATTTTAGGAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAAT</genome_strand>
        <mrna_strand>TTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG....................................................................................................................GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG.............................................................................................................................................GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321412" ref_strand="+" ref_description="SGN-E321412 [cTOB-23-O11]">
      <seq>gtttaattcatttcttctttgttatgacagtaatccatacaacaaaatcaaaatgccatattccgaaaagattataggcttttagatttgatttaacgaaatataagcaaaggcagattagttttcacaaatagtgttttggactcacttcccacttacacaatctctttattccttattcctacatatctggccaagaaattgataagattcgtcgaatctgaaatgaaaacagggacaagaaagcttttaatcatgctaagtgggaagctgtccaaaaagataaaaatctggaggcctgggagtacggaatctgaaagcacacaatgatagcctcttaaacaaatggtcatggagattcacaaaaggtgagaatgcaaaacggagtaagtcatcgagaccaaatatggtatgcaacacctgtggataacaaagcttactagctcttgtatggtttctctgtcgggaaaagcatctggactttctttagacgaattcctaggaaacaacatctttcaagttgggaaatggcagnaaatcagctttttggaatggccgtacccctctcaagtgtgtatccactctggcagcccatcagaatgcgtaacagattattactcaaaaatggcttgaacatcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0125L12-8eUh4/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0125L12.1" temp_strand="+" temp_description="C02HBa0125L12.1  AC215391.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0125L12 sequenced_by:kribb upload_account_name:korea">
        <position start="8902" stop="10143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9202" g_stop="9843" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0125L12.1" gen_strand="+" ref_id="SGN-E321412" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0125L12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9202" e_stop="9843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCATGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGAAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCAATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</genome_strand>
        <mrna_strand>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCATGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGNAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCCATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11828" PGL_stop="7777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11828" e_stop="11663"/>
            <exon e_start="11546" e_stop="11430"/>
            <exon e_start="8502" e_stop="8342"/>
            <exon e_start="8200" e_stop="7777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11828" e_stop="11663" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.860">
            <gDNA_intron_boundary i_start="11662" i_stop="11547" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11546" e_stop="11430" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.959">
            <gDNA_intron_boundary i_start="11429" i_stop="8503" i_length="2927"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8502" e_stop="8342" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8341" i_stop="8201" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="8200" e_stop="7777" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11828" stop="11663"/>
              <exon start="11546" stop="11430"/>
              <exon start="8502" stop="8342"/>
              <exon start="8200" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11827" stop="11663"/>
              <exon start="11546" stop="11430"/>
              <exon start="8502" stop="8342"/>
              <exon start="8200" stop="8159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11802" stop="11663"/>
              <exon start="11546" stop="11430"/>
              <exon start="8502" stop="8342"/>
              <exon start="8200" stop="7864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11509" stop="11430"/>
              <exon start="8502" stop="8342"/>
              <exon start="8200" stop="7777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11492" stop="11430"/>
              <exon start="8502" stop="8342"/>
              <exon start="8200" stop="7777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCATGGAGAGGTTACTAATCCTGAGGTTGACATGTTTGATAGAGAAAAGGTATTCATTGAAACGGTTCTAAGACCTTTGGTGCAGAAATTTCCACGATTGAAGGTCGTGATGGAGCATGTCACCACCATGGATGCTGTTAAGTTTGTTGAATCTTGCAGTGAAG : GATTTGTTGCAGCGACTGTCACCCCACAACATCTTGTTTTAAACAGGAATTCTCTCTTCCAAGGGGGCTTACAACCGCATAATTACTGCCTTCCAGTCCTCAAAAGAGAGATCCACA : GGGAGGCACTTGTGTCAGCTGTAACAAGTGGAAGTAAAAGATTTTTTCTTGGGACTGATAGTGCTCCTCATGATAGACGAAGAAAAGAATGTTCTTGTGGATGTGCTGGTATTTACAATGCTCCTGTAGCCTTATCAGTATATGCAAAGGTGTTTGAAAAG : GAAAATGCACTTGACAAGCTCGAAGCATTTACCAGCTTCAATGGACCAGACTTTTATGGGCTTCCGAGGAACAACTCAAAGATTAAGTTGAGTAAGACACCATGGAAGGTACCCGAATCCTTTTCATATGCATCAGGAGATATAATTCCCATGTTTGCTGGTGAAATGCTCGACTGGTTGCCGGCTCCTCTCTGAGAAAGGAAAAAAAAAAGAGATTCCCATTCTCATTTGTTGTTCTTGTACTGTAATACTGTGATTTAACTAAAGATATAGAGTGCAGGTGTGTCATCTTTCCTTTCATGTTTTAGATATTATCGCGATGATAATTATTGAAACAGTAAGTTTTCTATATGTGACTGAACTAAAGCTTTAGTTCGACCCATTATGATTGATTTTAAATAAAGATGAGGTTTAGTACAACAAG</gDNA_template>
            <first_frame> V  H  G  E  V  T  N  P  E  V  D  M  F  D  R  E  K  V  F  I  E  T  V  L  R  P  L  V  Q  K  F  P  R  L  K  V  V  M  E  H  V  T  T  M  D  A  V  K  F  V  E  S  C  S  E   : G  F  V  A  A  T  V  T  P  Q  H  L  V  L  N  R  N  S  L  F  Q  G  G  L  Q  P  H  N  Y  C  L  P  V  L  K  R  E  I  H   : R  E  A  L  V  S  A  V  T  S  G  S  K  R  F  F  L  G  T  D  S  A  P  H  D  R  R  R  K  E  C  S  C  G  C  A  G  I  Y  N  A  P  V  A  L  S  V  Y  A  K  V  F  E  K  :  E  N  A  L  D  K  L  E  A  F  T  S  F  N  G  P  D  F  Y  G  L  P  R  N  N  S  K  I  K  L  S  K  T  P  W  K  V  P  E  S  F  S  Y  A  S  G  D  I  I  P  M  F  A  G  E  M  L  D  W  L  P  A  P  L  *  E  R  K  K  K  R  D  S  H  S  H  L  L  F  L  Y  C  N  T  V  I  *  L  K  I  *  S  A  G  V  S  S  F  L  S  C  F  R  Y  Y  R  D  D  N  Y  *  N  S  K  F  S  I  C  D  *  T  K  A  L  V  R  P  I  M  I  D  F  K  *  R  *  G  L  V  Q  Q  </first_frame>
            <second_frame>  F  M  E  R  L  L  I  L  R  L  T  C  L  I  E  K  R  Y  S  L  K  R  F  *  D  L  W  C  R  N  F  H  D  *  R  S  *  W  S  M  S  P  P  W  M  L  L  S  L  L  N  L  A  V  K  :  D  L  L  Q  R  L  S  P  H  N  I  L  F  *  T  G  I  L  S  S  K  G  A  Y  N  R  I  I  T  A  F  Q  S  S  K  E  R  S  T  :  G  R  H  L  C  Q  L  *  Q  V  E  V  K  D  F  F  L  G  L  I  V  L  L  M  I  D  E  E  K  N  V  L  V  D  V  L  V  F  T  M  L  L  *  P  Y  Q  Y  M  Q  R  C  L  K  R :   K  M  H  L  T  S  S  K  H  L  P  A  S  M  D  Q  T  F  M  G  F  R  G  T  T  Q  R  L  S  *  V  R  H  H  G  R  Y  P  N  P  F  H  M  H  Q  E  I  *  F  P  C  L  L  V  K  C  S  T  G  C  R  L  L  S  E  K  G  K  K  K  E  I  P  I  L  I  C  C  S  C  T  V  I  L  *  F  N  *  R  Y  R  V  Q  V  C  H  L  S  F  H  V  L  D  I  I  A  M  I  I  I  E  T  V  S  F  L  Y  V  T  E  L  K  L  *  F  D  P  L  *  L  I  L  N  K  D  E  V  *  Y  N  K </second_frame>
            <third_frame>   S  W  R  G  Y  *  S  *  G  *  H  V  *  *  R  K  G  I  H  *  N  G  S  K  T  F  G  A  E  I  S  T  I  E  G  R  D  G  A  C  H  H  H  G  C  C  *  V  C  *  I  L  Q  *  R :   I  C  C  S  D  C  H  P  T  T  S  C  F  K  Q  E  F  S  L  P  R  G  L  T  T  A  *  L  L  P  S  S  P  Q  K  R  D  P  Q :   G  G  T  C  V  S  C  N  K  W  K  *  K  I  F  S  W  D  *  *  C  S  S  *  *  T  K  K  R  M  F  L  W  M  C  W  Y  L  Q  C  S  C  S  L  I  S  I  C  K  G  V  *  K   : G  K  C  T  *  Q  A  R  S  I  Y  Q  L  Q  W  T  R  L  L  W  A  S  E  E  Q  L  K  D  *  V  E  *  D  T  M  E  G  T  R  I  L  F  I  C  I  R  R  Y  N  S  H  V  C  W  *  N  A  R  L  V  A  G  S  S  L  R  K  E  K  K  K  R  F  P  F  S  F  V  V  L  V  L  *  Y  C  D  L  T  K  D  I  E  C  R  C  V  I  F  P  F  M  F  *  I  L  S  R  *  *  L  L  K  Q  *  V  F  Y  M  *  L  N  *  S  F  S  S  T  H  Y  D  *  F  *  I  K  M  R  F  S  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0125L12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11828" stop="11663"/>
                    <exon start="11546" stop="11430"/>
                    <exon start="8502" stop="8342"/>
                    <exon start="8200" stop="8006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHGEVTNPEVDMFDREKVFIETVLRPLVQKFPRLKVVMEHVTTMDAVKFVESCSEGFVAATVTPQHLVLNRNSLFQGGLQPHNYCLPVLKREIHREALVSAVTSGSKRFFLGTDSAPHDRRRKECSCGCAGIYNAPVALSVYAKVFEKENALDKLEAFTSFNGPDFYGLPRNNSKIKLSKTPWKVPESFSYASGDIIPMFAGEMLDWLPAPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9202" PGL_stop="9843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9202" e_stop="9843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9202" e_stop="9843" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9202" stop="9843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAATTCATTTCTTCTTTGTTATGACAGTAATCCATACAACAAAATCAAAATGCCATATTCCGAAAAGATTATAGGCTTTTAGATTTGATTTAACGAAATATAAGCAAAGGCAGATTAGTTTTCACAAATAGTGTTTTGGACTCACTTCCCACTTACACAATCTCTTTATTCCTTATTCCTACATATCTGGCCAAGAAATTGATAAGATTCGTCGAATCTGAAATGAAAACAGGGACAAGAAAGCTTTTAATCATGCTAAGTGGGAAGCTGTCCAAAAAGATAAAAATCTGGAGGCCTGGGAGTACGGAATCTGAAAGCACACAATGATAGCCTCTTAAACAAATGGTCATGGAGATTCACAAAAGGTGAGAATGCAAAACGGAGTAAGTCATCGAGACCAAATATGGTATGCAACACCTGTGGATAACAAAGCTTACTAGCTCTTGTATGGTTTCTCTGTCGGGAAAAGCATCTGGACTTTCTTTAGACGAATTCCTAGGAAACAACATCTTTCAAGTTGGGAAATGGCAGAAAATCAGCTTTTTGGAATGGCCGTACCCCTCTCAAGTGTGTATCCACTCTGGCAGCCAATCAGAATGCGTAACAGATTATTACTCAAAAATGGCTTGAACATCATCT</gDNA_template>
            <first_frame> V  *  F  I  S  S  L  L  *  Q  *  S  I  Q  Q  N  Q  N  A  I  F  R  K  D  Y  R  L  L  D  L  I  *  R  N  I  S  K  G  R  L  V  F  T  N  S  V  L  D  S  L  P  T  Y  T  I  S  L  F  L  I  P  T  Y  L  A  K  K  L  I  R  F  V  E  S  E  M  K  T  G  T  R  K  L  L  I  M  L  S  G  K  L  S  K  K  I  K  I  W  R  P  G  S  T  E  S  E  S  T  Q  *  *  P  L  K  Q  M  V  M  E  I  H  K  R  *  E  C  K  T  E  *  V  I  E  T  K  Y  G  M  Q  H  L  W  I  T  K  L  T  S  S  C  M  V  S  L  S  G  K  A  S  G  L  S  L  D  E  F  L  G  N  N  I  F  Q  V  G  K  W  Q  K  I  S  F  L  E  W  P  Y  P  S  Q  V  C  I  H  S  G  S  Q  S  E  C  V  T  D  Y  Y  S  K  M  A  *  T  S  S </first_frame>
            <second_frame>  F  N  S  F  L  L  C  Y  D  S  N  P  Y  N  K  I  K  M  P  Y  S  E  K  I  I  G  F  *  I  *  F  N  E  I  *  A  K  A  D  *  F  S  Q  I  V  F  W  T  H  F  P  L  T  Q  S  L  Y  S  L  F  L  H  I  W  P  R  N  *  *  D  S  S  N  L  K  *  K  Q  G  Q  E  S  F  *  S  C  *  V  G  S  C  P  K  R  *  K  S  G  G  L  G  V  R  N  L  K  A  H  N  D  S  L  L  N  K  W  S  W  R  F  T  K  G  E  N  A  K  R  S  K  S  S  R  P  N  M  V  C  N  T  C  G  *  Q  S  L  L  A  L  V  W  F  L  C  R  E  K  H  L  D  F  L  *  T  N  S  *  E  T  T  S  F  K  L  G  N  G  R  K  S  A  F  W  N  G  R  T  P  L  K  C  V  S  T  L  A  A  N  Q  N  A  *  Q  I  I  T  Q  K  W  L  E  H  H   </second_frame>
            <third_frame>   L  I  H  F  F  F  V  M  T  V  I  H  T  T  K  S  K  C  H  I  P  K  R  L  *  A  F  R  F  D  L  T  K  Y  K  Q  R  Q  I  S  F  H  K  *  C  F  G  L  T  S  H  L  H  N  L  F  I  P  Y  S  Y  I  S  G  Q  E  I  D  K  I  R  R  I  *  N  E  N  R  D  K  K  A  F  N  H  A  K  W  E  A  V  Q  K  D  K  N  L  E  A  W  E  Y  G  I  *  K  H  T  M  I  A  S  *  T  N  G  H  G  D  S  Q  K  V  R  M  Q  N  G  V  S  H  R  D  Q  I  W  Y  A  T  P  V  D  N  K  A  Y  *  L  L  Y  G  F  S  V  G  K  S  I  W  T  F  F  R  R  I  P  R  K  Q  H  L  S  S  W  E  M  A  E  N  Q  L  F  G  M  A  V  P  L  S  S  V  Y  P  L  W  Q  P  I  R  M  R  N  R  L  L  L  K  N  G  L  N  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0125L12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9592" stop="9834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIETKYGMQHLWITKLTSSCMVSLSGKASGLSLDEFLGNNIFQVGKWQKISFLEWPYPSQVCIHSGSQSECVTDYYSKMA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0125L12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9298" stop="9531"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNISKGRLVFTNSVLDSLPTYTISLFLIPTYLAKKLIRFVESEMKTGTRKLLIMLSGKLSKKIKIWRPGSTESESTQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0125L12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9645" stop="9842"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYGFSVGKSIWTFFRRIPRKQHLSSWEMAENQLFGMAVPLSSVYPLWQPIRMRNRLLLKNGLNII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 12672 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2112 bytes was the average size of a spliced alignment
$ 6800 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3400 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:03:56
-->
