<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:10:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g02220" ref_strand="+" ref_description="C2_At3g02220">
      <seq>aaaaatcttttagaagagaaaaagatgagcggcgtaaggaaagggccgccgaagcatcagaacaaagtcgcctggaaacctaacgccggtatcaaaatcaatgaaacggaagtgggtggaaaatttaggcctctctcagaaataacaggagtatgtcttcgttgtagagatcaaattgattggaagcgcaagtatggaaaatacaaagccattactgaacctgctaagtgtcagaagtgttcgaaaagaaacgtgcgtcaagcttaccacaatctctgcaatggctgtgcaaaggagcataaagtatgtgccaagtgttcatgtcgtgttggtcaagtggttggaagagatgtttcagaagtagaggctgagaaaaaagctcttgaggaggctatcaagaatgctcgagaacgggataggcggtcacttctacgagctatgaacaaagggaagtcacagagttcagagaaaaacctaagtcaagatgacatgaaagttggtgaactgaatacagcatcatcacttgaggaatatgctaaggtaaaccgtgatgatgacgaagatggtgaactgaatacagcatcatcacttgaggaatatgccaaggtaaaccgcgatgatgacgaagatgatgatgatgaagaagatgaaggtcaagttatttgagatgcacaatttggagaataaccatatggccctttatagatctcccttcatggtccatagtttgatgcacactagctcatttgtattggcagctttggagaaaagtaatttattgggcaaaattgatacaggctgtttggtttgcctccccttctacagtaaaggactaagagtgagatcaacacactattccattccttttccatttcatattttcctagctagtgaagagttctgagagtgtaatatagagtaagatagattcttaagccattttttaatgtaattcagctaaaaagacagcctgctagttgcttcataatgtgatgtaggagcattgatgttttgttggtcaatttactcaaatagtaactggtctttggttttttggaactttatggcccatcaaattatctcaagaataaattggctggctgggcgtttgcaactccaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0124N09.1" temp_strand="-" temp_description="C02HBa0124N09.1  AC215390.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0124N09 sequenced_by:kribb upload_account_name:korea">
        <position start="11774" stop="7660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11474" g_stop="11367" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11366" i_stop="11283" i_length="84">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11282" g_stop="11161" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="230" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11160" i_stop="10935" i_length="226">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10934" g_stop="10882" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="283" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10881" i_stop="10644" i_length="238">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10643" g_stop="10580" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="347" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10579" i_stop="10453" i_length="127">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10452" g_stop="10410" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="390" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10409" i_stop="10312" i_length="98">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10311" g_stop="10264" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="438" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10263" i_stop="8644" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.092" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8643" g_stop="7963" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="1119" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1120" polyA_stop="1140"/>
      <MATCH_line gen_id="C02HBa0124N09.1" gen_strand="-" ref_id="C2_At3g02220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1119</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0124N09.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g02220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11474" e_stop="11367"/>
          <exon e_start="11282" e_stop="11161"/>
          <exon e_start="10934" e_stop="10882"/>
          <exon e_start="10643" e_stop="10580"/>
          <exon e_start="10452" e_stop="10410"/>
          <exon e_start="10311" e_stop="10264"/>
          <exon e_start="8643" e_stop="7963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCTTTTAGAAGAGAAAAAGATGAGCGGCGTAAGGAAAGGGCCGCCGAAGCATCAGAACAAAGTCGCCTGGAAACCTAACGCCGGTATCAAAATCAATGAAACGGTACGTCTACTTTCATTCTCCGGCGACCAACCGCTATTTTTGTGGTCTGAACGAATTGATTGTTGGTGTTGCTTTTATTTGCAGGAAGTGGGTGGAAAATTTAGGCCTCTCTCAGAAATAACAGGAGTATGTCTTCGTTGTAGAGATCAAATTGATTGGAAGCGCAAGTATGGAAAATACAAAGCCATTACTGAACCTGCTAAGTGGTAAACTTCTACTTCTCTATTTTTGGTTGAATTGGTGGTTATCAACATTTTTATCAGTTTGTTTTAAGGATAATCTGTAGAAGATAAAAATGTTCGAGGTTAGCGAAACGCATATATAGCTGGTTAAAATTTCTACAGTACATAGTTATACTATCTTCATTGAAATTAGTGAACCACGGTACACTGACAAATGCTCCTGTTTTTTTTTCCCTCATAATTCTGATAGTCAGAAGTGTTCGAAAAGAAACGTGCGTCAAGCTTACCACAATCTCTGCAATGGTTAGTTTTGACTTCTTTTGCATATGATTTATTTTATTTTATATGTATTTGTTACAGTATAGTGAAATAATATGATATGAACTTAAATGGTGAAATGAGGATTCATATAGCCGCCCCCAACTTATTTTGGGATTGAGGCGAAGTTGTTTTTGTTACAACATGATGAAATCCCTCAATGCCTTGTTGAAATCTGTGTAGTTTTGGTTTAATGTTTTTGCATTTATTTGTAAAATCACAGGCTGTGCAAAGGAGCATAAAGTATGTGCCAAGTGTTCATGTCGTGTTGGTCAAGTGGTTGGAAGGTTTAAAGATTCTTCCTTTTCCCCCTTCCCTTCTCGATTTATTAAATCTCTATTTTTGCTAAAAATTAAATGATGAAAATTGTTTGTGGAAGACATCTCATGTGCTTTATTTTATGTTTTCTCATAGAGATGTTTCAGAAGTAGAGGCTGAGAAAAAAGCTCTTGAGGAGGTTTGTTCTCATAGTCTTATTGTTAGCTTTTCTGTCATCTATATGATCAGCGGGTCATTTGTCAACCTATGAATCTAATGTGCTATTGTTGGTTACAGGCTATCAAGAATGCTCGAGAACGGGATAGGCGGTCACTTCTACGAGCTGTAAGAGAATTTTCTGCTGAATTAACTTTATGATAAATGTTGTATGGGAAGCCTGTCTTGTCCTTGTTCCCAGCTAGCCCCCAACCCCAATCTCAACCCGCAATGGCAATTACTATTCAATAAGAAAATATTTATGATTAGATAGAAAAACCAAAATTCATGCTCTGTGTGTTAGACAAACAATTATCAGTTGTTCTAGTTACTACACTAGCTCAGTTGTCTGTTTTTCTTTTTTCTTAATAACAATGGTGCTTGAGCAACTTGTGTGCACATGGGCTATCATTAGTTTGGTACATTCTACATATGTTTAGTTCAACACCACAAGATCCTCCTTTCTTATACTCCGTACCAAGTCAAAACCAGTTAAACAAACTGAAAGGAGAAGGTGAAATACAACTTTAACATGTAATCCTCACAAATGCCCTTCTCTCAAATATTTTATGTCAGATGAAAGACAACTTTAACATGTTAATTGTGCGTAACCTTGTTCTTGCAAATACAAATGATGTAGGTGACAGTTAATGGTCATTTTCATTCTTATCTCTTTTGGATCTACCCGATTCTCTTCTATTTGTTTCTCCTGGAGTGGATTGAAAATAGTTGGAGGAGTGTTAGTGCATTTATAGTCTGTACGCATAAGCATATTTTTGTTCTCTGGATGTTAGATTGCCTGCTTATGTGTATATATGGAGTAGTAGTTATGCTTGAAATTGGTTTTTAAAGCTGAACACAATGTTTTCTGATTAAGTAAGATGTTCTCTTAGCATCAAGAAGATGCAAAAAGTAAAAATGATGGGATGTTAGCTCCTAATACACAGCATTTTTATACTACACACTGGAATCTAACTGAAAAATGAAAAATGGTAGTTTAGCCAGGCACAGTTAGCCAATGAAGTCTAGAAAGAGAATAACATAATTTCAATAGAGATTACTCCAACTAAAAAGTATCAGCAGACATCTAGCTTTCAAGGGTATATAGGAGCTGAAATACCATCAAAACATCTGAAGTTCCTGTAAAAATACACCAGAATATGCTAGCTGGGAGAATTGTCCTGATGCTCTTGATGGCCCTTTTGACTGTCCAAAAGCGCTAATATTCAACTGCTTCCTTGATACTCTGAGGTAGTATCCAACTGATCCCAATAATTGAAGAGAACATGCGGCAGACACCAGTAGTCACTGTGCAGAATGTTTTCCTGCTGGCTACTTTTAATTGCATAATACCCATTAAAGAGTACGTCTGCATGAGCCATGAAATGGATTTTGAGAAGTGAATTCTATATGTAACGATTGGTTGGTTCGATGAATGGTAGAGGGACAGTTGATTTACTTTTCACGTACTCATGTTTATTTACTATCTAATTGTACCATTTGATAGTATAAGCCCACATGACATCCTCCTCTTTTTTTTCTTTTTTCTTTTTAAAGTTCTCATCTTCTTTATGTATTACCAAGGTTGTAAATACTCATTCATTTCCCCTTTACCATTTGTGATTTCTACTGTGCTATAAAAGTATCTTGCTTTGCTGGAGTTCCATCACATTGGCGTCTGTTGCCTTACTATGTTGCTTTCAGGATGTTTCTGAGATTCTTAGCGTGCATCTTATGTCTATGCAACAGATGAACAAAGGGAAGTCACAGAGTTCAGAGAAAAACCTAAGTCAAGATGACATGAAAGTTGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCTAAGGTAAACCGTGATGATGACGAAGATGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCCAAGGTAAACCGCGATGATGACGAAGATGATGATGATGAAGAAGATGAAGGTCAAGTTATTTGAGATGCACAATTTGGAGAATAACCATATGGCCCTTTATAGATCTCCCTTCATGGTCCATAGTTTGATGCACACTAGCTCATTTGTATTGGCAGCTTTGGAGAAAAGTAATTTATTGGGCAAAATTGATACAGGCTGTTTGGTTTGCCTCCCCTTCTACAGTAAAGGACTAAGAGTGAGATCAACACACTATTCCATTCCTTTTCCATTTCATATTTTCCTAGCTAGTGAAGAGTTCTGAGAGTGTAATATAGAGTAAGATAGATTCTTAAGCCATTTTTTAATGTAATTCAGCTAAAAAGACAGCCTGCTAGTTGCTTCATAATGTGATGTAGGAGCATTGATGTTTTGTTGGTCAATTTACTCAAATAGTAACTGGTCTTTGGTTTTTTGGAACTTTATGGCCCATCAAATTATCTCAAGAATAAATTGGCTGGCTGGGCGTTTGCAACTCCA</genome_strand>
        <mrna_strand>AAAAATCTTTTAGAAGAGAAAAAGATGAGCGGCGTAAGGAAAGGGCCGCCGAAGCATCAGAACAAAGTCGCCTGGAAACCTAACGCCGGTATCAAAATCAATGAAACG....................................................................................GAAGTGGGTGGAAAATTTAGGCCTCTCTCAGAAATAACAGGAGTATGTCTTCGTTGTAGAGATCAAATTGATTGGAAGCGCAAGTATGGAAAATACAAAGCCATTACTGAACCTGCTAAGTG..................................................................................................................................................................................................................................TCAGAAGTGTTCGAAAAGAAACGTGCGTCAAGCTTACCACAATCTCTGCAATG..............................................................................................................................................................................................................................................GCTGTGCAAAGGAGCATAAAGTATGTGCCAAGTGTTCATGTCGTGTTGGTCAAGTGGTTGGAAG...............................................................................................................................AGATGTTTCAGAAGTAGAGGCTGAGAAAAAAGCTCTTGAGGAG..................................................................................................GCTATCAAGAATGCTCGAGAACGGGATAGGCGGTCACTTCTACGAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACAAAGGGAAGTCACAGAGTTCAGAGAAAAACCTAAGTCAAGATGACATGAAAGTTGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCTAAGGTAAACCGTGATGATGACGAAGATGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCCAAGGTAAACCGCGATGATGACGAAGATGATGATGATGAAGAAGATGAAGGTCAAGTTATTTGAGATGCACAATTTGGAGAATAACCATATGGCCCTTTATAGATCTCCCTTCATGGTCCATAGTTTGATGCACACTAGCTCATTTGTATTGGCAGCTTTGGAGAAAAGTAATTTATTGGGCAAAATTGATACAGGCTGTTTGGTTTGCCTCCCCTTCTACAGTAAAGGACTAAGAGTGAGATCAACACACTATTCCATTCCTTTTCCATTTCATATTTTCCTAGCTAGTGAAGAGTTCTGAGAGTGTAATATAGAGTAAGATAGATTCTTAAGCCATTTTTTAATGTAATTCAGCTAAAAAGACAGCCTGCTAGTTGCTTCATAATGTGATGTAGGAGCATTGATGTTTTGTTGGTCAATTTACTCAAATAGTAACTGGTCTTTGGTTTTTTGGAACTTTATGGCCCATCAAATTATCTCAAGAATAAATTGGCTGGCTGGGCGTTTGCAACTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLEC-7-L24" ref_strand="+" ref_description="cLEC-7-L24">
      <seq>attttctaaagcttctgaaaaagatcttgagtgcgttttcacaataatgtgcaaccttgtcaagaagcctgagagcttggaccaagtacatgagatggcagagctcatatccgctaaaatcattcaacaacccaatgataaacccgcattgcgcttgaaaatcttgttcaatctctacaatctgttggagaacccatacagccgtttctgcgtttacttgaagtccctcaagttggccactgccgggaaggttactgaacacattttgtcgtccatcaaaatgatggataacttcttgaaggagtggaatcttggagtcaaagatcagagagagctgtttcttgcaatctccaacattttaaaggaaagcacaggctctacaaaagattctttcatgtttcttacaaagtatctggaaaccttttcgtctgaagatgcttctaatatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0124N09-uPRi7/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0124N09.1" temp_strand="-" temp_description="C02HBa0124N09.1  AC215390.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0124N09 sequenced_by:kribb upload_account_name:korea">
        <position start="28648" stop="27215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28348" g_stop="28326" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28325" i_stop="28103" i_length="223">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28102" g_stop="27964" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="162" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27963" i_stop="27883" i_length="81">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27882" g_stop="27670" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="375" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27669" i_stop="27591" i_length="79">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.524" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27590" g_stop="27515" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="451" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0124N09.1" gen_strand="-" ref_id="cLEC-7-L24" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0124N09.1" gen_strand="-"/>
        <rDNA rDNA_id="cLEC-7-L24" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28348" e_stop="28326"/>
          <exon e_start="28102" e_stop="27964"/>
          <exon e_start="27882" e_stop="27670"/>
          <exon e_start="27590" e_stop="27515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTAAAGCTTCTGAAAAAGGTAAAACTACATTTCTGCCATTCCAATGAACTGCTGATAATGATAGGTCCTGGCCTTTTCCATTCTGGGGGGCTTTTCTTTTTTCATCCATATAAAAGCAATTATTTGATTGTCTGAGCCAGTTGTTGTCAATTGTCGTCTTATGTTTCTTTTCCCAGTTTCTGTTTCTCCCTTCTTCTTTTTTGCTTTTGTGATTAACCGAATGTGCTTTTTTTCTGCTCAGATCTTGAGTGCGTTTTCACAATAATGTGCAACCTTGTCAAGAAGCCTGAGAGCTTGGACCAAGTACATGAGATGGCAGAGCTCATATCCGCTAAAATCATTCAACAACCCAATGATAAACCCGCATTGCGCTTGAAAATGTATCTCACTTTGTATTAATCACTTTGATTCCCTCAAATTTTTTCTGTGGTCTGATTACATTTTTTCTCATCTATTTTCAGCTTGTTCAATCTCTACAATCTGTTGGAGAACCCATACAGCCGTTTCTGCGTTTACTTGAAGTCCCTCAAGTTGGCCACTGCCGGGAAGGTTACTGAACACATTTTGTCGTCCATCAAAATGATGGATAACTTCTTGAAGGAGTGGAATCTTGGAGTCAAAGATCAGAGAGAGCTGTTTCTTGCAATCTCCAACATTTTAAAGGAAAGCAAAGGGTAAGATGGGAGTGACTTCTTTTTTGGACTATTTATGCTTATGATGGTGGCTTTTTCTCATACTCGTGCATATTTGCAGCTCTACAAAAGATTCTTTCATGTTTCTTACAAAGTATCTGGAAACCTTTTCGTCTGAAGATGCTTCTAATATGACT</genome_strand>
        <mrna_strand>ATTTTCTAAAGCTTCTGAAAAAG...............................................................................................................................................................................................................................ATCTTGAGTGCGTTTTCACAATAATGTGCAACCTTGTCAAGAAGCCTGAGAGCTTGGACCAAGTACATGAGATGGCAGAGCTCATATCCGCTAAAATCATTCAACAACCCAATGATAAACCCGCATTGCGCTTGAAAAT.................................................................................CTTGTTCAATCTCTACAATCTGTTGGAGAACCCATACAGCCGTTTCTGCGTTTACTTGAAGTCCCTCAAGTTGGCCACTGCCGGGAAGGTTACTGAACACATTTTGTCGTCCATCAAAATGATGGATAACTTCTTGAAGGAGTGGAATCTTGGAGTCAAAGATCAGAGAGAGCTGTTTCTTGCAATCTCCAACATTTTAAAGGAAAGCACAGG...............................................................................CTCTACAAAAGATTCTTTCATGTTTCTTACAAAGTATCTGGAAACCTTTTCGTCTGAAGATGCTTCTAATATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11474" PGL_stop="7963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11474" e_stop="11367"/>
            <exon e_start="11282" e_stop="11161"/>
            <exon e_start="10934" e_stop="10882"/>
            <exon e_start="10643" e_stop="10580"/>
            <exon e_start="10452" e_stop="10410"/>
            <exon e_start="10311" e_stop="10264"/>
            <exon e_start="8643" e_stop="7963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.092" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11474" e_stop="11367" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11366" i_stop="11283" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11282" e_stop="11161" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11160" i_stop="10935" i_length="226"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10934" e_stop="10882" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10881" i_stop="10644" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10643" e_stop="10580" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.871" acc_prob="0.977">
            <gDNA_intron_boundary i_start="10579" i_stop="10453" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10452" e_stop="10410" e_length="43"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10409" i_stop="10312" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10311" e_stop="10264" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.092">
            <gDNA_intron_boundary i_start="10263" i_stop="8644" i_length="1620"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8643" e_stop="7963" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11474" stop="11367"/>
              <exon start="11282" stop="11161"/>
              <exon start="10934" stop="10882"/>
              <exon start="10643" stop="10580"/>
              <exon start="10452" stop="10410"/>
              <exon start="10311" stop="10264"/>
              <exon start="8643" stop="7963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g02220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATCTTTTAGAAGAGAAAAAGATGAGCGGCGTAAGGAAAGGGCCGCCGAAGCATCAGAACAAAGTCGCCTGGAAACCTAACGCCGGTATCAAAATCAATGAAACG : GAAGTGGGTGGAAAATTTAGGCCTCTCTCAGAAATAACAGGAGTATGTCTTCGTTGTAGAGATCAAATTGATTGGAAGCGCAAGTATGGAAAATACAAAGCCATTACTGAACCTGCTAAGTG : TCAGAAGTGTTCGAAAAGAAACGTGCGTCAAGCTTACCACAATCTCTGCAATG : GCTGTGCAAAGGAGCATAAAGTATGTGCCAAGTGTTCATGTCGTGTTGGTCAAGTGGTTGGAAG : AGATGTTTCAGAAGTAGAGGCTGAGAAAAAAGCTCTTGAGGAG : GCTATCAAGAATGCTCGAGAACGGGATAGGCGGTCACTTCTACGAGCT : ATGAACAAAGGGAAGTCACAGAGTTCAGAGAAAAACCTAAGTCAAGATGACATGAAAGTTGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCTAAGGTAAACCGTGATGATGACGAAGATGGTGAACTGAATACAGCATCATCACTTGAGGAATATGCCAAGGTAAACCGCGATGATGACGAAGATGATGATGATGAAGAAGATGAAGGTCAAGTTATTTGAGATGCACAATTTGGAGAATAACCATATGGCCCTTTATAGATCTCCCTTCATGGTCCATAGTTTGATGCACACTAGCTCATTTGTATTGGCAGCTTTGGAGAAAAGTAATTTATTGGGCAAAATTGATACAGGCTGTTTGGTTTGCCTCCCCTTCTACAGTAAAGGACTAAGAGTGAGATCAACACACTATTCCATTCCTTTTCCATTTCATATTTTCCTAGCTAGTGAAGAGTTCTGAGAGTGTAATATAGAGTAAGATAGATTCTTAAGCCATTTTTTAATGTAATTCAGCTAAAAAGACAGCCTGCTAGTTGCTTCATAATGTGATGTAGGAGCATTGATGTTTTGTTGGTCAATTTACTCAAATAGTAACTGGTCTTTGGTTTTTTGGAACTTTATGGCCCATCAAATTATCTCAAGAATAAATTGGCTGGCTGGGCGTTTGCAACTCCA</gDNA_template>
            <first_frame> K  N  L  L  E  E  K  K  M  S  G  V  R  K  G  P  P  K  H  Q  N  K  V  A  W  K  P  N  A  G  I  K  I  N  E  T  :  E  V  G  G  K  F  R  P  L  S  E  I  T  G  V  C  L  R  C  R  D  Q  I  D  W  K  R  K  Y  G  K  Y  K  A  I  T  E  P  A  K  C :   Q  K  C  S  K  R  N  V  R  Q  A  Y  H  N  L  C  N   : G  C  A  K  E  H  K  V  C  A  K  C  S  C  R  V  G  Q  V  V  G  R :   D  V  S  E  V  E  A  E  K  K  A  L  E  E  :  A  I  K  N  A  R  E  R  D  R  R  S  L  L  R  A  :  M  N  K  G  K  S  Q  S  S  E  K  N  L  S  Q  D  D  M  K  V  G  E  L  N  T  A  S  S  L  E  E  Y  A  K  V  N  R  D  D  D  E  D  G  E  L  N  T  A  S  S  L  E  E  Y  A  K  V  N  R  D  D  D  E  D  D  D  D  E  E  D  E  G  Q  V  I  *  D  A  Q  F  G  E  *  P  Y  G  P  L  *  I  S  L  H  G  P  *  F  D  A  H  *  L  I  C  I  G  S  F  G  E  K  *  F  I  G  Q  N  *  Y  R  L  F  G  L  P  P  L  L  Q  *  R  T  K  S  E  I  N  T  L  F  H  S  F  S  I  S  Y  F  P  S  *  *  R  V  L  R  V  *  Y  R  V  R  *  I  L  K  P  F  F  N  V  I  Q  L  K  R  Q  P  A  S  C  F  I  M  *  C  R  S  I  D  V  L  L  V  N  L  L  K  *  *  L  V  F  G  F  L  E  L  Y  G  P  S  N  Y  L  K  N  K  L  A  G  W  A  F  A  T  P </first_frame>
            <second_frame>  K  I  F  *  K  R  K  R  *  A  A  *  G  K  G  R  R  S  I  R  T  K  S  P  G  N  L  T  P  V  S  K  S  M  K  R :   K  W  V  E  N  L  G  L  S  Q  K  *  Q  E  Y  V  F  V  V  E  I  K  L  I  G  S  A  S  M  E  N  T  K  P  L  L  N  L  L  S   : V  R  S  V  R  K  E  T  C  V  K  L  T  T  I  S  A  M  :  A  V  Q  R  S  I  K  Y  V  P  S  V  H  V  V  L  V  K  W  L  E   : E  M  F  Q  K  *  R  L  R  K  K  L  L  R  R :   L  S  R  M  L  E  N  G  I  G  G  H  F  Y  E  L :   *  T  K  G  S  H  R  V  Q  R  K  T  *  V  K  M  T  *  K  L  V  N  *  I  Q  H  H  H  L  R  N  M  L  R  *  T  V  M  M  T  K  M  V  N  *  I  Q  H  H  H  L  R  N  M  P  R  *  T  A  M  M  T  K  M  M  M  M  K  K  M  K  V  K  L  F  E  M  H  N  L  E  N  N  H  M  A  L  Y  R  S  P  F  M  V  H  S  L  M  H  T  S  S  F  V  L  A  A  L  E  K  S  N  L  L  G  K  I  D  T  G  C  L  V  C  L  P  F  Y  S  K  G  L  R  V  R  S  T  H  Y  S  I  P  F  P  F  H  I  F  L  A  S  E  E  F  *  E  C  N  I  E  *  D  R  F  L  S  H  F  L  M  *  F  S  *  K  D  S  L  L  V  A  S  *  C  D  V  G  A  L  M  F  C  W  S  I  Y  S  N  S  N  W  S  L  V  F  W  N  F  M  A  H  Q  I  I  S  R  I  N  W  L  A  G  R  L  Q  L   </second_frame>
            <third_frame>   K  S  F  R  R  E  K  D  E  R  R  K  E  R  A  A  E  A  S  E  Q  S  R  L  E  T  *  R  R  Y  Q  N  Q  *  N   : G  S  G  W  K  I  *  A  S  L  R  N  N  R  S  M  S  S  L  *  R  S  N  *  L  E  A  Q  V  W  K  I  Q  S  H  Y  *  T  C  *  V  :  S  E  V  F  E  K  K  R  A  S  S  L  P  Q  S  L  Q  W :   L  C  K  G  A  *  S  M  C  Q  V  F  M  S  C  W  S  S  G  W  K  :  R  C  F  R  S  R  G  *  E  K  S  S  *  G   : G  Y  Q  E  C  S  R  T  G  *  A  V  T  S  T  S   : Y  E  Q  R  E  V  T  E  F  R  E  K  P  K  S  R  *  H  E  S  W  *  T  E  Y  S  I  I  T  *  G  I  C  *  G  K  P  *  *  *  R  R  W  *  T  E  Y  S  I  I  T  *  G  I  C  Q  G  K  P  R  *  *  R  R  *  *  *  *  R  R  *  R  S  S  Y  L  R  C  T  I  W  R  I  T  I  W  P  F  I  D  L  P  S  W  S  I  V  *  C  T  L  A  H  L  Y  W  Q  L  W  R  K  V  I  Y  W  A  K  L  I  Q  A  V  W  F  A  S  P  S  T  V  K  D  *  E  *  D  Q  H  T  I  P  F  L  F  H  F  I  F  S  *  L  V  K  S  S  E  S  V  I  *  S  K  I  D  S  *  A  I  F  *  C  N  S  A  K  K  T  A  C  *  L  L  H  N  V  M  *  E  H  *  C  F  V  G  Q  F  T  Q  I  V  T  G  L  W  F  F  G  T  L  W  P  I  K  L  S  Q  E  *  I  G  W  L  G  V  C  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0124N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11474" stop="11367"/>
                    <exon start="11282" stop="11161"/>
                    <exon start="10934" stop="10882"/>
                    <exon start="10643" stop="10580"/>
                    <exon start="10452" stop="10410"/>
                    <exon start="10311" stop="10264"/>
                    <exon start="8643" stop="8416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNLLEEKKMSGVRKGPPKHQNKVAWKPNAGIKINETEVGGKFRPLSEITGVCLRCRDQIDWKRKYGKYKAITEPAKCQKCSKRNVRQAYHNLCNGCAKEHKVCAKCSCRVGQVVGRDVSEVEAEKKALEEAIKNARERDRRSLLRAMNKGKSQSSEKNLSQDDMKVGELNTASSLEEYAKVNRDDDEDGELNTASSLEEYAKVNRDDDEDDDDEEDEGQVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28348" PGL_stop="27515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28348" e_stop="28326"/>
            <exon e_start="28102" e_stop="27964"/>
            <exon e_start="27882" e_stop="27670"/>
            <exon e_start="27590" e_stop="27515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.524" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28348" e_stop="28326" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28325" i_stop="28103" i_length="223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28102" e_stop="27964" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27963" i_stop="27883" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="27882" e_stop="27670" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.524">
            <gDNA_intron_boundary i_start="27669" i_stop="27591" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27590" e_stop="27515" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28348" stop="28326"/>
              <exon start="28102" stop="27964"/>
              <exon start="27882" stop="27670"/>
              <exon start="27590" stop="27515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLEC-7-L24" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTCTAAAGCTTCTGAAAAAG : ATCTTGAGTGCGTTTTCACAATAATGTGCAACCTTGTCAAGAAGCCTGAGAGCTTGGACCAAGTACATGAGATGGCAGAGCTCATATCCGCTAAAATCATTCAACAACCCAATGATAAACCCGCATTGCGCTTGAAAAT : CTTGTTCAATCTCTACAATCTGTTGGAGAACCCATACAGCCGTTTCTGCGTTTACTTGAAGTCCCTCAAGTTGGCCACTGCCGGGAAGGTTACTGAACACATTTTGTCGTCCATCAAAATGATGGATAACTTCTTGAAGGAGTGGAATCTTGGAGTCAAAGATCAGAGAGAGCTGTTTCTTGCAATCTCCAACATTTTAAAGGAAAGCAAAGG : CTCTACAAAAGATTCTTTCATGTTTCTTACAAAGTATCTGGAAACCTTTTCGTCTGAAGATGCTTCTAATATGACT</gDNA_template>
            <first_frame> I  F  *  S  F  *  K  R :   S  *  V  R  F  H  N  N  V  Q  P  C  Q  E  A  *  E  L  G  P  S  T  *  D  G  R  A  H  I  R  *  N  H  S  T  T  Q  *  *  T  R  I  A  L  E  N  :  L  V  Q  S  L  Q  S  V  G  E  P  I  Q  P  F  L  R  L  L  E  V  P  Q  V  G  H  C  R  E  G  Y  *  T  H  F  V  V  H  Q  N  D  G  *  L  L  E  G  V  E  S  W  S  Q  R  S  E  R  A  V  S  C  N  L  Q  H  F  K  G  K  Q  R  :  L  Y  K  R  F  F  H  V  S  Y  K  V  S  G  N  L  F  V  *  R  C  F  *  Y  D  </first_frame>
            <second_frame>  F  S  K  A  S  E  K   : D  L  E  C  V  F  T  I  M  C  N  L  V  K  K  P  E  S  L  D  Q  V  H  E  M  A  E  L  I  S  A  K  I  I  Q  Q  P  N  D  K  P  A  L  R  L  K  I :   L  F  N  L  Y  N  L  L  E  N  P  Y  S  R  F  C  V  Y  L  K  S  L  K  L  A  T  A  G  K  V  T  E  H  I  L  S  S  I  K  M  M  D  N  F  L  K  E  W  N  L  G  V  K  D  Q  R  E  L  F  L  A  I  S  N  I  L  K  E  S  K  G :   S  T  K  D  S  F  M  F  L  T  K  Y  L  E  T  F  S  S  E  D  A  S  N  M  T </second_frame>
            <third_frame>   F  L  K  L  L  K  K  :  I  L  S  A  F  S  Q  *  C  A  T  L  S  R  S  L  R  A  W  T  K  Y  M  R  W  Q  S  S  Y  P  L  K  S  F  N  N  P  M  I  N  P  H  C  A  *  K   : S  C  S  I  S  T  I  C  W  R  T  H  T  A  V  S  A  F  T  *  S  P  S  S  W  P  L  P  G  R  L  L  N  T  F  C  R  P  S  K  *  W  I  T  S  *  R  S  G  I  L  E  S  K  I  R  E  S  C  F  L  Q  S  P  T  F  *  R  K  A  K   : A  L  Q  K  I  L  S  C  F  L  Q  S  I  W  K  P  F  R  L  K  M  L  L  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0124N09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28347" stop="28326"/>
                    <exon start="28102" stop="27964"/>
                    <exon start="27882" stop="27670"/>
                    <exon start="27590" stop="27515"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKASEKDLECVFTIMCNLVKKPESLDQVHEMAELISAKIIQQPNDKPALRLKILFNLYNLLENPYSRFCVYLKSLKLATAGKVTEHILSSIKMMDNFLKEWNLGVKDQRELFLAISNILKESKGSTKDSFMFLTKYLETFSSEDASNMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 115 chains have been computed
$ 
$ memory statistics:
$ 4048 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 6992 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3496 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 115 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:10:42
-->
