<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:11:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354850" ref_strand="+" ref_description="SGN-E354850 [cTOS-19-N19]">
      <seq>aacatgttcctaaggtgaatcctcataggatatttgatattgaaattcatggaatattattatgggcttcaatgggattcttgatgccagctggaatactcacaataagactctccaatacagaagagtgtagcacaacaaaactcaaaattctcttctatgttcatggaactcttcaggtactctctgtggtgttggctactgctggagctgtgctatcaataaagagctttgaaaatttgttcaacaatactcaccaaagaataggcttagcactttatattgccgtctatgtccaattttttatgggatttcgaaggcctatgaggggaagtaaaggaagaagtgtgtggtactttttccattggctacttggaacaacaatatgtttggcaggaattatcaacacttacacaggcttaaatgcttacaatcaaagaacatcaaagccaataagcctttggacaataatttttacagctcaaatatcattcatgggattattctatcttttccaagacaaatgggaatatatacaaaagcaaggggtcattcttaacaacaatgaaactacaacacctcaagtggaaatagttgttcctcaaaatgatgaacaaaagatgataatgagaactgagtcaggaaggaaaagcaatgcacttggtactttcttttctagacataatgtcctaaacaaattatttcaacaaacttgaaatgttttcatgtttcttgtaaattactagtttctcgatacgcatgtgtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="1051" stop="3984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1051" g_stop="1055" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="14" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1056" i_stop="1363" i_length="308">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1364" g_stop="1528" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="179" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1529" i_stop="2094" i_length="566">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2095" g_stop="2243" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="328" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2244" i_stop="3241" i_length="998">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3242" g_stop="3684" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="771" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E354850" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1051" e_stop="1055"/>
          <exon e_start="1364" e_stop="1528"/>
          <exon e_start="2095" e_stop="2243"/>
          <exon e_start="3242" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGTATGACCCCCCCCACCCCACCCCACCCCCCTACAAAATTGTTGTGTTTATGGAAGCACATTCAGAATTTAAATTTGATCTGTCGGGTTCATCCGAACCTAGGTTAAAATAATTTTTTATGTATATATAGCAGATGTCGAACTCCCTTCGATTTCTTCGTGTGTCTATTTTTCAGATTTTGAACCTCTTGTCAAAAATTCTGGCTCTGCTCCATAACATAGGAAGACATTTGCTTTCCCTTATTTAATTCGGTTTTTTTTTCCAAACAAGGGATGAGAATTTGACAACTAATGTTAAGTATTGTATAGGTGAATTCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGATTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAGGTAACTAACACTGTGTTTTTCTGGTTTCGATTTGATACGGAGTTTAAAAAAATAAAAAAAAATGTAACAAAATCTCCTTTGATACTGTGGTCTAATCTTTAAACACATGACACGTGTCACAAAAGAAAAGAGACATTCTTTTTTAAATAAACTAAAAAAGAAAAATAAAAGAAACAAACTGAAAAAGAAACAGAATGAAGATTTAGTTTCAAATTTTGAAAATGAATTTAAATTTTTAGTAAAGGGAAAAAAAAACTTTTTTGATATCTCCTTGATGAATGATAAATGTTTCTTTTGAGCCATGACAAGTAATGATCATAAATTGATCTTTACTTTAGGTGCACTTTTAATCATAGTAATGTTAAAAAAAGTTCAAAATTCATTTATGTGAGCCCACAGTTTGGTGGGAGTATAAGTAAAAACAGATTTGACTATGATTGTGTCCATTAATATGAGGATTTATTTAACTAATACTAGAAATTAAAAAAAAAAATTATGTTATTTCTTTTGTTTCTGGCTGTAATAATTGATCCTATTTTATTTTCTTTCTATTTTTATTTGTAAAGGTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAGGTAACTTGTCCTTTATTTTTTAAGCAATTACTTCATTCGTCCACTTTTATTTGTTATGAAAGTTAATTTGATTAATTTTCAAAGTTAAATTAGATTATATTAATTTGATATTTTAAACAAAAAATTTAGTTATTCAAAAATTATATGAAAAGTAGTACACCATATAAATTATTTGTATATCAATATGATGAAAAAATCAACCTTAAAATGTTAGACAAAGTTTTTATAGTTTGACTCTAAAAATAGAAACTATGACAATTAATAGTGGATGAAGAGAGTAATAATAGATATAGTGAAACTTTGCCTAGGTTGAATTGTAAAAAGAAAAAATCTTTTTGGCTAGAAAATTTGGCCAGAATTTAACCAGAATGGTATTTTACCTATGTTATTTTATCTTTTTGAATATTTTTACCATTTTAACTTTAATTACTTTAAATTAAAAAAATATTTAAAAAATTAATTTATTTTAAAATAAAAAGATATTATACGCTTTTAAAATTTTCTAACCAAATTTTGAGGTCACCCTTATAAAATATATGTAGGAAAAGCAGCACCTTGGCTTTCTAAAAGAAAATTGAATCCCGCGTACACGGGTCTTGAGATTTGTATTTTTGATACAGTCGTCTAAAATTAAGTATTAAGTAGCTTTACTCATACCCACTTGTTATTTTTGATTAATTCAAGTATTAAGTAGCTTTATTTTATTAGAATTTGAGCACTGATCTTTTTAACGATTTTCACCAATTTCATTCACACTATACTACACCTTTGAGCCTTTTGTACACGCACTTATAACTACAAGCATGATGTCAATATGAGTAATGCACATCTAGAGGCTTCTCTAGAATTATGTGTACATATATCAAAAACATGCATATAACTAAATCAAACTCGTTCTGAATCAACTTACTCTAAATTTTGGATTCATCTCGACTTAAACATATCTCTATGAAATTTAATTAAAGACTAACTTATTATTTAACTCTTTTGGACTATAGGGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</genome_strand>
        <mrna_strand>CTAAG....................................................................................................................................................................................................................................................................................................................GTGAATCCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGACTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366645" ref_strand="+" ref_description="SGN-E366645 [cLPT-17-O5]">
      <seq>ttttatctcccctgtacccttgagataccctctttgactctgagaatctccactcaaatggcttcttcagaccaccatatgcatgaccaccaccatcatgaccatgaccatgaccatgaccatacccatcaggacacaaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctttaatgctggcattatgtaaagtcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6382" stop="8633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6682" g_stop="6807" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.74"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="320" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="381" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8333" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="527" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E366645" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6682" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTGTGA--CTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCAT---CATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCT</genome_strand>
        <mrna_strand>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTTTGACTCTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGCATGACCACCACCATCATGACCATGACCATGACCATGACCATACCCATCA....................................................................................GGACACAAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTTTAATGCTGGCATTATGTAAAGTCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624427" ref_strand="+" ref_description="SGN-E624427 [GI|13161907]">
      <seq>atggcttcttcaggtcaccatatgcatgaccatgaccaccatgaccatgataaccaccatcatcatcaccatacccatgaggacacgaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcaatgagagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaagctcttaagggaaaaatacagtcttgcagcagtaacaaacgatatattcacgaaagaggatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatcagctggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagttgcaacaggcaataagaagcgctgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatataacattcaatttccctgtttctggactaatataatctgtctactgaataatgcttgttatgtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6458" stop="10593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6737" g_stop="6807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.775"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6881" i_length="74">
            <donor d_prob="0.996" d_score="0.72"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6882" g_stop="7080" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="269" r_length="198" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="532" r_length="202" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="654" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="759" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10293" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="970" r_length="211" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E624427" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6737" e_stop="6807"/>
          <exon e_start="6882" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAG</genome_strand>
        <mrna_strand>ATGGCTTCTTCAGGTCACCATATGCATGACCATGACCACCATGACCATGATAACCACCATCATCATCACCA..........................................................................TACCCATGA-GGACACGAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAATGAGAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAGCTCTTAAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAACGATATATTCACGAAAGAGGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCAGCTGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTGCAACAGGCAATAAGAAGCGCTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGC---TATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624426" ref_strand="+" ref_description="SGN-E624426 [GI|13161909]">
      <seq>atggcttctccagatcaccatatgcatgaccatgaccatggtcaccaccatcataatcatgaccatacccatgaggacacaaaagcaacatcatggataggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttattgagaggaatttcagtgaaagagcctttactattggaattggcggccctgttggtactgggaaaacagctctaatgctggcattatgtaaagtcttaagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccagaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacgcaagcagatctccttgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6587" stop="10474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6737" g_stop="6807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.761"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.68"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="263" r_length="189" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="324" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="526" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="648" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="753" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10174" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="841" r_length="88" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E624426" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6737" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCAGACCACCATATGAATGACCACCACCA---CCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT-AATTG</genome_strand>
        <mrna_strand>ATGGCTTCTCCAGATCACCATATGCATGACCATGACCATGGTCACCACCATCATAATCATGACCATACCCATGA....................................................................................GGACACAAAAGCAACATCATGGATAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTATTGAGAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGCGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAGTCTTAAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCAGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624428" ref_strand="+" ref_description="SGN-E624428 [GI|13161905]">
      <seq>atggcttctccagatcaccatatgcatgaccatgaccatggtcaccaccatcataatcatgaccatacccatgaggacacaaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttattgacaggaatttcagtgaaagagcctttactattggaattggcggccctgttggtactgggaaaacagctctaatgctggcattatgtaaagtcttgagggacaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatcagcgggtgacaaaattcctcgaaaaggaggccccggaattacgcaagcagatctccttgtgataaataagaccgacttggcaccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgagggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgttgaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6587" stop="10474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6737" g_stop="6807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.761"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.68"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="263" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="324" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="526" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="648" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="753" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10174" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="841" r_length="88" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E624428" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6737" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTCTTCAGACCACCATATGAATGACCACCACCA---CCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT-AATTG</genome_strand>
        <mrna_strand>ATGGCTTCTCCAGATCACCATATGCATGACCATGACCATGGTCACCACCATCATAATCATGACCATACCCATGA....................................................................................GGACACAAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTATTGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGCGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAGTCTTGAGGGACAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCAGCGGGTGACAAAATTCCTCGAAAAGGAGGCCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGAGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTTGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545473" ref_strand="+" ref_description="SGN-E545473 [TUS-68-F11]">
      <seq>ccaccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6451" stop="9087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6751" g_stop="6807" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="246" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="307" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="509" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="631" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8787" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="655" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E545473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6751" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCA</genome_strand>
        <mrna_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341087" ref_strand="+" ref_description="SGN-E341087 [cTOE-22-E18]">
      <seq>ccaccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6451" stop="8544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6751" g_stop="6807" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="246" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="307" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8244" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="364" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E341087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6751" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCA</genome_strand>
        <mrna_strand>CCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310713" ref_strand="+" ref_description="SGN-E310713 [cLEZ-15-O13]">
      <seq>caccatatgaatgaccaccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6452" stop="8539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6752" g_stop="6807" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="245" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="306" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8239" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="358" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E310713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6752" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATG</genome_strand>
        <mrna_strand>CACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730324" ref_strand="+" ref_description="SGN-E730324 [LA23DB06]">
      <seq>aatgacctccaccaccatcatcatcatgaccatgaccataaccatgaggacacaaaagcgacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaacagctctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggcaccagctgtgggggcagatttgtccgtcatggagcgtgatgcacttcagatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaatcctgggaagttgcaacaggcaataagaagcgctaattgaaaactcacttgaacattgtggatcttttggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6461" stop="10510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6761" g_stop="6807" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="236" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="297" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="499" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="621" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="726" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10210" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="848" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E730324" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6761" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTA</genome_strand>
        <mrna_strand>AATGACCTCCACCACCATCATCATCATGACCATGACCATAACCATGA....................................................................................GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAAC-TCACTTGAACATTGTGGATCTTTTGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624506" ref_strand="+" ref_description="SGN-E624506 [GI|13161903]">
      <seq>ctccactctcccaacacctcaaatggcttctccagatgaccatgatcaccaccatcataatcatgaccatacccatgaggacacaaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttattgacaggaatttcagtgaaagagcctttactattggaattggcggccctgttggtactgggaaaacagctctaatgctggcattatgtaaagtcttaagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactttgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggccccggaattacgcaagcagatctccttgtgataaataagactgacttggcatcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggccctcttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatataacattcaatttccctgtttctggactaatataatctgtctactgaataatgcttgttatgtacaagcactaagtatttgtaagtttctatatttaatttggtttgtttgatcatcattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6587" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6776" g_stop="6807" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="78" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="267" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="328" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="530" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="0.98"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="652" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="757" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10351" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="1025" r_length="268" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E624506" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6776" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</genome_strand>
        <mrna_strand>CACCACCATCATAATCATGACCATACCCATGA....................................................................................GGACACAAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTATTGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGCGGCCCTGTTGGTACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAGTCTTAAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTTTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGCCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACTGACTTGGCATCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTCTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGC---TATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACTAAGTATTTGTAAGTTTCTATATTTAATTTGGTTTGTTTGATC-ATCATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624425" ref_strand="+" ref_description="SGN-E624425 [GI|13161911]">
      <seq>atggcttctccagatcaccatatgcatgaccatgaccatgaccatgaccatgaccatgatcaccaccatcataatcatgaccatacccatgaggacacaaaagcaacatcatgggtaggagcagatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttattgacaggaatttcagtgaaagagcctttactattggaattggcggccctgttggcactgggaaaacagctctaatgctggcattatgtaaagtcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatcagctggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggtgtagaggacatagtgaaccatatcttacaagcttgggaagttgcaacaggcaataagaagcggtgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatataacattcaatttccctgtttctggactaatataatctgtctacttaataatgcttgttatgtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6587" stop="10593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6776" g_stop="6807" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="92" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6892" g_stop="7080" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="281" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="342" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="544" r_length="202" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="666" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="771" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10088" g_stop="10293" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="982" r_length="211" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E624425" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6776" e_stop="6807"/>
          <exon e_start="6892" e_stop="7080"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCATCATGACCATGACCATAACCATGAGTACAAACTTGCTCTGTCATTTTTTTAAATTTTTTGTTTTTGGGTTGATTCTTGATTAATTAGTTGACTTACTTTATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGGGTATTTCTTCTTTTCCCTCAATTTTTCTTAAATTTATGTCTTGGGATGTGTGTTCAAGTGAAAGGGTTTTCAGTATTTGAGAAGAAAAATTCAATCTTTGAGAAATGAAAGTAGAAGGGGGAGGATGATATTTAGTAGCTTTTGGTATCTGTTGTAAGTAGGATTTTCTTTTAGCTGCAGCAACCCAAGTAAGAAACAAAAGGGACCATTTTTATTGATAAAAAAATTGAATCTTTAGAACTCTGCATATAGGAACACAATTGTTCCATTAGACACATATCTGACTGTGTGAATGTGTGTATGAGTGTGCTAGAGCATTTTCCTTTTCAGTTCAAGGTTCATAATGTACTGGAGTGACTTCACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAG</genome_strand>
        <mrna_strand>CACCACCATCATAATCATGACCATACCCATGA....................................................................................GGACACAAAAGCAACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTATTGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGCGGCCCTGTTGGCACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAGCTCTAATGCTGGCATTATGTAAAGTCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCAGCTGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGTGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTGCAACAGGCAATAAGAAGCGGTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGC---TATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTTAATAATGCTTGTTATGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266426" ref_strand="+" ref_description="SGN-E266426 [cLEI-3-L19]">
      <seq>agatgggaaagtataccatagtcatgatgggttggctcctcactctcatgaacctatttattcacctggctactttagcagaagggcacctccacttaatgacaggaatttcagtgaaagagcctttactattggaattggtggccctgttggtactgggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="6622" stop="7383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6922" g_stop="7080" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E266426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6922" e_stop="7080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG</genome_strand>
        <mrna_strand>AGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403322" ref_strand="-" ref_description="SGN-E403322 [PPC-10-C24]">
      <seq>actgggaaaccagctctaatgctggcattatgtaaagtcttaagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaagatggagagttcttaataaaacatggtgcattgccagaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacgcaagcagatctccttgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatctgaacattcaatttccctgtttctggtgtaatataatctatctactgaataatgcttgttatgtacaagcactaagtatttgtaagtttctatatttaatttggtttgtttgatcatcattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="7283" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7442" g_stop="7446" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7447" i_stop="7583" i_length="137">
            <donor d_prob="0.856" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7584" g_stop="7644" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="66" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="268" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="390" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="495" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10088" g_stop="10351" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="764" r_length="269" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E403322" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403322" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7442" e_stop="7446"/>
          <exon e_start="7584" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGGTATGTTATTGTTTTTGTAGTATTAGTGTTTGCTTTTGCTTTTCCTCCAATCGCAGTTTCTTTCTTGTTTATTAGCTTGTAAAATTTTGGTTGAACATGTTGAGATTTTGAGGGACTAACTGTTCTTTTATATGCAGGAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</genome_strand>
        <mrna_strand>ACTGG.........................................................................................................................................GAAACCAGCTCTAATGCTGGCATTATGTAAAGTCTTAAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCAGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGCTA-TCT-GAACATTCAATTTCCCTGTTTCTGGTGTAATATAATCTATCTACTGAATAATGCTTGTTATGTACAAGCACTAAGTATTTGTAAGTTTCTATATTTAATTTGGTTTGTTTGATC-ATCATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348086" ref_strand="+" ref_description="SGN-E348086 [cTOF-31-P19]">
      <seq>tctaatgctggcattatgtaaaatcttgagggaaaaatacagtcttgcagcagtaacaaatgatatattcacgaaagaaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattagggaagaatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacacaagcagatctccttgtgataaataagaccgacttggcaccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcagatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaatcctggggaagttgcaacaggcaataagaagcgctaattgaaaacttcacttgaacaattgtggatcttttggcttatccagtgctattatataacattcaatttccctgtttctggactaatataantctgtctactgaataatgcttgttatgtacaagcacctagtatttataagttcctatatttaaatttggtttggtttgatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="7293" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7593" g_stop="7644" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8188" g_stop="8389" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="256" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="378" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="483" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10088" g_stop="10348" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="749" r_length="266" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E348086" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7593" e_stop="7644"/>
          <exon e_start="8188" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCAGTATGTACCACCAAATGATTTCTTTCTTTTGCCATTGTGACATACTTACTTCATGAATAAGTTTAGTCTGCACAATTTTTTGGAACTGGTGGATTCACTTTTGTGGTTTGGAAAATGGAACTCAAGTTTATTGGTGGTTTTCATATCTTTCTCTGCCTCATCATTTGAAATTCTAGATGAAGATGGGTGTTACATGCAATTTTCCGTTTGATTGAGTCATTTCAAGTGGAATAACAACATTCTTTATACACAATTGCCTTTGGAGATTATCTCAATAGGTCATGTTCTTGTTTTTTAATCATTAAGGACTCCTTCCTAAACATCACATATTGGCATCTGCCAAAACTTCAAACCGAGGTTTTGGGAGTTTACTTGACGTTTGTTAGTTTGACAGGAAATACGTTATGTGCAAGCATGTATTTGGTGTTCTGGAATTCCGACGCTCTTTCATCACTTTCCAAGTCTATGATCTTGAAATCTTCACGTTTTTGTTCTAAGATGTAGAATGAATTAATGTCCATGTTAAGATGCATTTCTTTGTAGGTAACAAATGATATATTCACGAAAG-AAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAG-ATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCT-GGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAAC-ATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAA-TCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTT-AATTTGGTTT-GTTTGATCAATCATTAA</genome_strand>
        <mrna_strand>TCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAAATGATATATTCACGAAAGAAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGAATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACAATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAANTCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAAATTTGGTTTGGTTTGATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288406" ref_strand="+" ref_description="SGN-E288406 [cLES-16-J13]">
      <seq>acgaaagaagatggagagttcttaataaaacatggtgcattgccggaggaaaggattcgagcagtggagacaggaggatgcccacatgctgctattaaggaagatataagcattaaccttggacctcttgaggagctttctaattggtacaaagcagatatactactctgtgaatctggtggagacaacctaactgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaacaggaggtcccggaattacacaagcagatctccttgtgataaataagacctacttggcaccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcatatgcgggacggtggcccttttgattttgctcaggtgaaacatggtgttggcgtacaggacatagtgaaccatatcttacaatcctgggaagttgcaacaggcaataagaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="7906" stop="10468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8206" g_stop="8389" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="0.98"/>
            <acceptor a_prob="0.728" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="306" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="411" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10088" g_stop="10168" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="492" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E288406" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8206" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGC</genome_strand>
        <mrna_strand>ACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAAGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTGGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAACTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAACAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCTACTTGGCACCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCATATGCGGGACGGTGGCCCTTTTGATTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATGGTGTTGGCGTACAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570905" ref_strand="+" ref_description="SGN-E570905 [15563]">
      <seq>gagagttcttaataaaacatggtgcattgccggaggaaaggattcgagctgtggagacaggaggatgcccacatgctgctattagggaagatataagcattaaccttggacctcttgaggagctttctaatttgtacaaagcagatatactactctgtgaatctggtggagacaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatcagcgggtgacaaaattcctcgaaaaggaggccccggaattacgcaagcagatctccttgtgataaataagaccgacttggcaccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgagggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgttgaggacatagtgaaccatatcttacaagcttgggaagtttcaacaggcaataagaagcgctgaaatgttcatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatctgaacattcaatttccctgtttctggagtaatataatctatctactgaataatgcttgttatgtacaagcactaagtatctgtaagtttctataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="7919" stop="10618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8219" g_stop="8389" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148">
            <donor d_prob="0.460" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="293" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="398" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10088" g_stop="10320" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="637" r_length="239" r_score="0.841"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E570905" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8219" e_stop="8389"/>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAGGTAATTGGTCACAGAAACTGTTTGCAGACACAAACTAATAAGGATATTAAAGTTTATATTTTCAGTAAGATAATGACTGTCTTACATCACTGTATGATCAGATATTAACCCGTTTCAATTTTGGTTTAAGAAAAGTTCCTTATTGCAGACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATT</genome_strand>
        <mrna_strand>GAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCTGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG....................................................................................................................................................ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCAGCGGGTGACAAAATTCCTCGAAAAGGAGGCCCCGGAATTACGCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGAGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTTGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTTCAACAGGCAATAAGAAGCGCTGAAATGTTCATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGCTA-TCT-GAACATTCAATTTCCCTGTTTCTGGAGTAATATAATCTATCTACTGAATAATGCTTGTTATGTACAAGCACTAAGTATCTGTAAGTTTCTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545472" ref_strand="+" ref_description="SGN-E545472 [TUS-68-F11](-)">
      <seq>acaacctagctgccaacttcagtagggaacttgctgactacataatctacataatagatgtatctgcgggtgacaaaattcctcgaaaaggaggtcccggaattacccaagcagatctccttgtgataaataagaccgacttggccccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcagatgggggatgggggcccttttgtttttgctcaggtgaaccatggggttggcgtagaggacatagtgaaccattttttccaatcctgggaagttgcaccaggcaataagaagcgctaattgaaaacttcacttgaccattggggatcttttggcttatccagtgctattatataacattcaatttccctgtttcgggactaatataatctgtctactgaataatgcttgttatgtccaagcccctagtatttataagttcctatatttaatttggtttgtttgatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="8238" stop="44598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8538" g_stop="8659" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="227" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10088" g_stop="10341" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="481" r_length="254" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10342" i_stop="11057" i_length="716">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.63"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11058" g_stop="11106" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="530" r_length="49" r_score="0.633"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E545472" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8538" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10341"/>
          <exon e_start="11058" e_stop="11106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTTGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCATATTTACTTTCTTCTAGAAACAACCCTTTTACCTACGCAAGGTAGGAGTAAGGTCTAGGTCTATGTATATTCTATCTTCCCAAACTCCGCTTGTGGAGTGTATTTCGTCTTGTCACTTCAAGGAGGGTGTTTTGCCTTTGTCCAAACTCAATTGGTTGGTTGAGCTTTTAGTGTAAGATTTAGGGCCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAAGTACTTTTAAAAGTGCTGAAACTTATTTTAAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATGTCAAACGTGAAAAGGGATAAATGGAAGAAAGAAATGTTAGGGTTATATGGGTAATTTGGAGATTGTATAAAAATATTAAGCACAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTATAAGCTAAAAATAAAAAAGCACTCCTGCCCCAGCTTTTAACTTTTGGCTTAAAATAAGTTTTTTTTTAACTTAAAATAAGCTGTTTTGAGTATTGCCAAACAGCTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAGACTTTTTTCGATTTAAAACTATTCCAATGGTAATTTTTAAAATACTTTTCAAATCTGTAACGTTTATTTACAAGAACAAGAAAGGACGTATTCATTAGGAATTATATTTCATTTCAAAAAGTCCAAATAGATAATCCCAAAAAAAAAATACATGAAATGAAAGA</genome_strand>
        <mrna_strand>ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACCCAAGCAGATCTCCTT........................................................................................................GTGATAAATAAGACCGACTTGGCCCCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGGGGGATGGGGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACCATGGGGTTGGCGTAGAGGACATAGTGAACCATTTTTTCCAATCCTGGGAAGTTGCACCAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGACCATTGGGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCGGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTCCAAGCCCCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419676" ref_strand="-" ref_description="SGN-E419676 [STM-30-C13]">
      <seq>tgtgataaataagaccgacttggcagcagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcggatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaagcttgggaagttgcaacaggcaataagaagcgctgaaatgttaatcgaaaactttacttgaacattatggatcttttggcttctccaatgctatataacattcaatttccctgtttctggactaatataatctgtctactgaataatgcttgttatgtacaagcactaagtatttgtaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="8464" stop="10612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8659" g_stop="8659" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8764" g_stop="8868" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="106" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10088" g_stop="10312" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="336" r_length="230" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E419676" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419676" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8659" e_stop="8659"/>
          <exon e_start="8764" e_stop="8868"/>
          <exon e_start="10088" e_stop="10312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATGTTTCTTATTTTGCACATTTTGACTTCCAAAATATATCAAGTGTAAACTTATGTCTGCACATGATCAAATTATTATATGATTGTTCATTCTTAAATTTAGGTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCT--AA---T--T-GAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTT</genome_strand>
        <mrna_strand>T........................................................................................................GTGATAAATAAGACCGACTTGGCAGCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCGGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAAGCTTGGGAAGTTGCAACAGGCAATAAGAAGCGCTGAAATGTTAATCGAAAACTTTACTTGAACATTATGGATCTTTTGGCTTCTCCAATGC---TATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACTAAGTATTTGTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354041" ref_strand="+" ref_description="SGN-E354041 [cTOS-16-C22]">
      <seq>aagaccgacttggcaccagctgtgggagcagatttgtccgtcatggagcgtgatgcacttcagatgcgggatggtggcccttttgtttttgctcaggtgaagcatggggttggcgtagaggacatagtgaaccatatcttacaatcctgggaagttgcaacaggcaataagaagcgctaattgaaaacttcacttgaacattgtggatcttttggcttatccagtgctattatataacattcaatttccctgtttctggactaatataatctgtctactgaataatgcttgttatgtacaagcgcctagtatttataagttcctatatttaatttggtttgtttgatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="8473" stop="10648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8773" g_stop="8868" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10088" g_stop="10349" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="358" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E354041" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8773" e_stop="8868"/>
          <exon e_start="10088" e_stop="10349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAGGTTCAGTAATTTTCTCTTCTCTATTCATTTTTATTTTTTTATAATTTTATTAGTATGACTCTGAATCAAACACCACTGTTCAAGCTTTACCTATTTGAAAGATCAGCTTGTAACTCTCCAGTATTTGAAGAGTTAAACAATGATGTGCATATACGAAATGTCATTTGTGTGTTTGTGAATTCTTGAAATGTAAAAAGTTTTTCCAAAAATAACTCCCTTTGTTCTACCTTCTGTCTGTGTATAGCTTGTCCGGGAAACATTAACCGTTTTTCCATAAACAAATAGGCTTTCTATCTCCAAAAAGTCAAAATCAACTTGTAGTAGTATCATTTGCATTGTTTACATTTTATTCGACTTCTTTTCATATTAAATATAAACTTAAGCGCATCAATACATTTGAAACTGATCCTGAATTTACATGCTATTCAAATCTATGTTGCTCGGACTCTTCCAAAATATCAACGGGTGCTTGTCGGATTCTCTAAAAGTAGTGTACTTTAGGAGAATCCAACATGGGTGCGGCATCGACTGTGAAGAGTCTGTGCAACTTAGATTCAAATAGCTTGGTCACTGTGATGATTTGAGAGAATAAATAGTAATGGAAGTGTAAAAAGTCGTATTGTCTCTGTGTTTGCAATATGAATCTTCACCCTGGCTATGTAGAATACCATGTTACATTTGCTTTCCTATATTGTGACTACACAATGACACGAAGGCAACAGTGAAAGAAATAGCTTCCATGTCCGACATACATACATCTTTTGTTCTCTTTCAATTTCTCTCGATTCTTTGGAGCATTTCCCGCGTCTTCTATTTGAAGTTGTTTGATGAAAGTGGAGAAGCTTCTGAATCTTTGTTTATAAAGACGCGGTCAAATATGCATGCTTTTAGTGACCAAATAATACAAATATTCTAGTTCAGATATATTTCTTTGATAACATACCTTGATACATGAACTTCTTGACTGAAAAGGAAAAGTTGAGAGGGGTGCATCAGAAGATTTGCCTGTTATTAAGAACTAGTACTAGAGAAAAGAATGAGATTTCATTTGTGAGACCGGAACTTTCTTGTGCAAATGTGCGATTTAAAAGCAAGCACGTTACAATATTGGAAGCTGGTTTGTTTGTTGAAACTATAAATTGCACCACAGGAAAATGTCACAGGGTGATTTTCATCTATTGATTCCTAACGCGATATGAGTGTGTTGATTCAACTGCAGGTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAAT</genome_strand>
        <mrna_strand>AAGACCGACTTGGCACCAGCTGTGGGAGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCGCCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727022" ref_strand="+" ref_description="SGN-E727022 [LA13CA08]">
      <seq>ctcaattctaaccctaaacccaaacgacagtgagaagaagcaaaggaacaactcgaaccatcaaaaaccaatagcaatcaatcaatcaatcaaacccaaaaaggtgtgcgtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaaatctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagcttgagatgaaagcaatcaaggatggttcagtaagctatgctgccttagaacgaaaggctaagttatatgataagctggtgaggggtgagctttctgatggggaggagggagagaagtactgtgttgacttctttcggaagggccaggagcaggaagactctgaacagcttcaacggcatgacatttctaacacagaaccaagagatgaagatggagatgatgatgcctccctactatcagacacaaaagctgcaggacttggccaagctggcacatttgaccgaagtgaacacaagcgtttcgttatggaagttcataaagaagcaagtcaagcaagggaaaaagcatcagaactcaagctacgtaggcaagaacaagtagcaacacgtcgagaaaaactaaagcaggcttatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12502" stop="15450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12802" g_stop="13238" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14386" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="752" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14387" i_stop="15041" i_length="655">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15042" g_stop="15150" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="861" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E727022" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12802" e_stop="13238"/>
          <exon e_start="14072" e_stop="14386"/>
          <exon e_start="15042" e_stop="15150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTCTAACCCTAAACCCAAACGACAGTGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTATGTATGTATTGCTATTTATACACTATTTTGAGCTTAAATGTTTGTATGCTCAGTTGAGTAGAAAAAAAAAATCTAGTTTCTGTGTTTTACACTACCTAAGATGTTTGCAAGACTTTGCAGTCACTCATAAAACTGTCTGATTCACTTTGTGCCTAACATTATTTGTTGCGAACACTTTCTGCTTATAGTATTTAATAGATTTAGGAAAATAGAACATCTACCCAATTGTGATGGAAGAATTATGAACCTATCAATGATCAGAATGGTACTTGCTTATGTGCGCAAACGCAGAAAGGCTCCTGTTAAAAATCAAATAAATTACAGGACACCGGATTTTAAGGATGGGAGTTTGGGTGCTAAAACATCCTAGGTATCTTAGGTTTGTTCTTAATTGTCAGGTTTAAGGAAACCCCTCTCCTCCTTCCTCTTCTTGTCTTTGTTTATTTTCCATTTTTCTTGGGTAGTTTGCTTGAGAAGTAACTTTCTACCCGAGCAAAGAATTTGATCCCTAAACATAAGTTACAAGTGCAGAAAATTGTCGTTTATTGTTTGCGAAGAAGTTCATTAATTGCTTATCAGTCTGTTTTCTCTTACTATATTTAATTTGTTCACAACCTTTATCTACTTACATTTGCATTCCATGTTGCTGTTCTCAGGGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTC</genome_strand>
        <mrna_strand>CTCAATTCTAACCCTAAACCCAAACGACAGTGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAACACGTCGAGAAAAACTAAAGCAGGCTTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290343" ref_strand="+" ref_description="SGN-E290343 [cLES-20-M7]">
      <seq>gacagtgagaagaagcaaaggaacaactcgaaccatcaaaaaccaatagcaatcaatcaatcaatcaaacccaaaaaggtgtgcgtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaaatctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagcttgagatgaaagcaatcaaggatggttcagtaagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12527" stop="14418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12827" g_stop="13238" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14118" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="459" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E290343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12827" e_stop="13238"/>
          <exon e_start="14072" e_stop="14118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATG</genome_strand>
        <mrna_strand>GACAGTGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247575" ref_strand="+" ref_description="SGN-E247575 [cLEF-42-F21]">
      <seq>tgagaagaagcaaaggaacaactcgaaccatcaaaaaccaatagcaatcaatcaatcaatcaaacccaaaaaggtgtgcgtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaaatctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagcttgagatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12532" stop="14389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12832" g_stop="13238" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14089" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="425" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E247575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12832" e_stop="13238"/>
          <exon e_start="14072" e_stop="14089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAA</genome_strand>
        <mrna_strand>TGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394573" ref_strand="+" ref_description="SGN-E394573 [TUS-14-J15]">
      <seq>gaacaactcgaaccatcaaaaaccaatagcaatcaatcaatcaatcaaacccaaaaaggtgtgcgtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaaatctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagcttgagatgaaagcaatcaaggatggttcagtaagctatgctgccttagaacgaaaggctaagttatatgataagctggtgaggggtgagctttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12547" stop="14478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12847" g_stop="13238" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14178" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="499" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E394573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12847" e_stop="13238"/>
          <exon e_start="14072" e_stop="14178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATG</genome_strand>
        <mrna_strand>GAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202534" ref_strand="+" ref_description="SGN-E202534 [cLEC-6-P3]">
      <seq>aacaactcgaaccatcaaaaaccaatagcaatcaatcaatcaatcaaacccaaaaaggtgtgcgtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatcctaccaattgaaggcgttggtgctttttccatccttgagcttaaagcccaattatacaaatctcaagaataggccaatcgcgttatcaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12548" stop="13526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12848" g_stop="13226" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E202534" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12848" e_stop="13226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGC</genome_strand>
        <mrna_strand>AACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCTACCAATTGAAGGCGTTGGTGCTTTTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAATAGGCCAATCGCGTTATCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305621" ref_strand="+" ref_description="SGN-E305621 [cLEX-14-D19]">
      <seq>gtgtgtgggtgcagagcaagaaatcaatggcggaaggtggggagaagaagagggttgtcgtggagtcgttaggatggttaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaaatctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12611" stop="13543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12911" g_stop="13238" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E305621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12911" e_stop="13238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA</genome_strand>
        <mrna_strand>GTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452187" ref_strand="+" ref_description="SGN-E452187 [cSTS-15-N20]">
      <seq>caaacataaaaaggtgtgtgtgaatttgtgcagagcaagaaatcaatggcggaaggcggggagaagaaggagaagaagagggttgtggtggagtcgttaggatggctaacggaatccaccatcatgcccaaaaagatccgaccaattgaaggcgtcggtgcttcttccatccttgagcttaaagcccaattatacaagtctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgaccccaattattcccatttagagatccaccgtgccaagaagaagataactgccaagaacgtcttttcgtctaaaaatcacggggttgatgccagagaggccaaggacaaacttgagatgaaagcaatcaaggacggttcagtaagctatgctgccttagaacgaaaggctaagttatatgataagctggttaggggtgagctttctgatggggaggaggaagagaagtactgtgttgatttctttcggaagggccaggagcaggaagactctgagcagcttcaacggcatgacatttctaacacagaaccaagagatgaagatgtagatgatgatgcctccctactatcagacacaaaagctgcaggacttggccaagctggcacattcgaccgaagtgaacataagcgttttgtaatggaagttcataaagaaagcagtcaaagcagggaaaaagcatcagaactcaagctacgtaggcaagaacaagttgcagcacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12592" stop="15424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12955" g_stop="13238" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="356" r_length="284" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14386" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="671" r_length="315" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14387" i_stop="15041" i_length="655">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15042" g_stop="15124" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="754" r_length="83" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E452187" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12955" e_stop="13238"/>
          <exon e_start="14072" e_stop="14386"/>
          <exon e_start="15042" e_stop="15124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTATGTATGTATTGCTATTTATACACTATTTTGAGCTTAAATGTTTGTATGCTCAGTTGAGTAGAAAAAAAAAATCTAGTTTCTGTGTTTTACACTACCTAAGATGTTTGCAAGACTTTGCAGTCACTCATAAAACTGTCTGATTCACTTTGTGCCTAACATTATTTGTTGCGAACACTTTCTGCTTATAGTATTTAATAGATTTAGGAAAATAGAACATCTACCCAATTGTGATGGAAGAATTATGAACCTATCAATGATCAGAATGGTACTTGCTTATGTGCGCAAACGCAGAAAGGCTCCTGTTAAAAATCAAATAAATTACAGGACACCGGATTTTAAGGATGGGAGTTTGGGTGCTAAAACATCCTAGGTATCTTAGGTTTGTTCTTAATTGTCAGGTTTAAGGAAACCCCTCTCCTCCTTCCTCTTCTTGTCTTTGTTTATTTTCCATTTTTCTTGGGTAGTTTGCTTGAGAAGTAACTTTCTACCCGAGCAAAGAATTTGATCCCTAAACATAAGTTACAAGTGCAGAAAATTGTCGTTTATTGTTTGCGAAGAAGTTCATTAATTGCTTATCAGTCTGTTTTCTCTTACTATATTTAATTTGTTCACAACCTTTATCTACTTACATTTGCATTCCATGTTGCTGTTCTCAGGGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTC</genome_strand>
        <mrna_strand>AAGAAGAGGGTTGTGGTGGAGTCGTTAGGATGGCTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAGTCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCCAATTATTCCCATTTAGAGATCCACCGTGCCAAGAAGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCACGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAACTTGAGATGAAAGCAATCAAGGACGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTTAGGGGTGAGCTTTCTGATGGGGAGGAGGAAGAGAAGTACTGTGTTGATTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAGCAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGTAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTCGACCGAAGTGAACATAAGCGTTTTGTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCATAAAGAAAGCAGTCAAAGCAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTTGCAGCACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453123" ref_strand="+" ref_description="SGN-E453123 [cSTS-18-P10]">
      <seq>cttccatccttgagcttaaagcccaattatacaagtctcaagaagaggccaaacgcgtcgccaaagagaccgtccacccttctgctgctgaccccaattattcccatttagagatccaccgtgccaagaagaagataactgccaagaacgtcttttcgtctaaaaatcacggggttgatgccagagaggccaaggacaaacttgagatgaaagcaatcaaggacggttcagtaagctatgctgccttagaacgaaaggctaagttatatgataagctggttaggggtgagctttctgatggggaggaggaagagaagtactgtgttgatttctttcggaagggccaggagcaggaagactctgagcagcttcaacggcatgacatttctaacacagaaccaagagatgaagatgtagatgatgatgcctccctactatcagacacaaaagctgcaggacttggccaagctggcacattcgaccgaagtgaacataagcgttttgtaatggaagttcataaagaagcaagtcaagcaagggaaaaagcatcagaactcaagctacgtaggcaagaacaagttgcagcacgtcgagaaaaactaaagcaggcttatctccgcaagcagattgagaaattgaaggcttccaagacagagcagacatagaccagagggaggtgtttttgaggctggnaagtttgaatctgcacttcatttgaacaaagcccctgagatagcgaatccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12746" stop="15510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13046" g_stop="13238" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14386" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="508" r_length="315" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14387" i_stop="15041" i_length="655">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15042" g_stop="15206" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="673" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E453123" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13046" e_stop="13238"/>
          <exon e_start="14072" e_stop="14386"/>
          <exon e_start="15042" e_stop="15206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTATGTATGTATTGCTATTTATACACTATTTTGAGCTTAAATGTTTGTATGCTCAGTTGAGTAGAAAAAAAAAATCTAGTTTCTGTGTTTTACACTACCTAAGATGTTTGCAAGACTTTGCAGTCACTCATAAAACTGTCTGATTCACTTTGTGCCTAACATTATTTGTTGCGAACACTTTCTGCTTATAGTATTTAATAGATTTAGGAAAATAGAACATCTACCCAATTGTGATGGAAGAATTATGAACCTATCAATGATCAGAATGGTACTTGCTTATGTGCGCAAACGCAGAAAGGCTCCTGTTAAAAATCAAATAAATTACAGGACACCGGATTTTAAGGATGGGAGTTTGGGTGCTAAAACATCCTAGGTATCTTAGGTTTGTTCTTAATTGTCAGGTTTAAGGAAACCCCTCTCCTCCTTCCTCTTCTTGTCTTTGTTTATTTTCCATTTTTCTTGGGTAGTTTGCTTGAGAAGTAACTTTCTACCCGAGCAAAGAATTTGATCCCTAAACATAAGTTACAAGTGCAGAAAATTGTCGTTTATTGTTTGCGAAGAAGTTCATTAATTGCTTATCAGTCTGTTTTCTCTTACTATATTTAATTTGTTCACAACCTTTATCTACTTACATTTGCATTCCATGTTGCTGTTCTCAGGGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTCCGCAAGCAGATTGAGAAATTGAAGGCTTCCAAGACAGAGCAGACATAGACCAGAGG</genome_strand>
        <mrna_strand>CTTCCATCCTTGAGCTTAAAGCCCAATTATACAAGTCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCCAATTATTCCCATTTAGAGATCCACCGTGCCAAGAAGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCACGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAACTTGAGATGAAAGCAATCAAGGACGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTTAGGGGTGAGCTTTCTGATGGGGAGGAGGAAGAGAAGTACTGTGTTGATTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAGCAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGTAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTCGACCGAAGTGAACATAAGCGTTTTGTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTTGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTCCGCAAGCAGATTGAGAAATTGAAGGCTTCCAAGACAGAGCAGACATAGACCAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321125" ref_strand="+" ref_description="SGN-E321125 [cTOB-13-I12]">
      <seq>acccttctgctgctgacccgaattattcccatctagagatccatcgtgcaaagaggaagataactgccaagaacgtcttttcgtctaaaaatcatggggttgatgccagagaggccaaggacaagcttgagatgaaagcaatcaaggatggttcagtaagctatgctgccttagaacgaaaggctaagttatatgataagctggtgaggggtgagctttctgatggggaggaggaagagaagtactgtgttgacttctttcggaagggccaggagcaggaagactctgaacagcttcaacggcatgacatttctaacacagaaccaagagatgaagatggagatgatgatgcctccctactatcagacacaaaagctgcaggacttggccaagctggcacatttgaccgaagtgaacacaagcgtttcgttatggaagttcataaagaagcaagtcaagcaagggaaaaagcatcagaactcaagctacgtaggcaagaacaagtagcagcacgtcgagaaaaactaaagcaggcttatctccgcaagcagattgagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="12821" stop="15470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13121" g_stop="13238" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14072" g_stop="14386" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="433" r_length="315" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14387" i_stop="15041" i_length="655">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15042" g_stop="15170" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="562" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E321125" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13121" e_stop="13238"/>
          <exon e_start="14072" e_stop="14386"/>
          <exon e_start="15042" e_stop="15170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAAGTATACTTTCTGCTTCCCTTGCCCTATTTTTACTTGTTAATTATAGTATTCGTTTTCAATTTTTCATGTTCAGCGTTCTGGGGTTTCATAATTGAGGTTAGAATCTAGTTTAATGATAGTTTGATACTATCAAAGAGTTAGAATTGATATTAAAGTATCTTAGATATTGCAGTTGTATATGTGATTAAGATTCTGGCTTTGATTGTAGGATTGGAATTGGGGAAGGATGGTGATTAGTAAGTCATATACTAGAATCTTATAGTTTGATGCAATTGTGGAAATTAGGGCAAATTTTGATTCTATGTTCTGATTGATTATATCAGGAGTTGAAGTTGGATTTTATCTTATTTTGGGATAATTTTCTGGAGTCCTGCACATGTTTATGCATTTGATATTCATTTTTGTTCAAGGCATATGTGTTAAGCAGTGGGTGGAGGACTGCTCTGGGCACATTGGTGTCTTATGAGGCCTGTGATCCAGAAAATCTCCAAGGCTATTGTCCGAACCACTAGAGTTATTGGTGCTCCAGCCCTTTAATGTAGAACTAAATCATGTTTGTATGTGCCAGCAGGCTCCCCGTTGCATATTGCTTTGTCTTTCCATATCAAGTTCCCTCCATACTTTGTATTCTTTTTCATCTTTTGGCATGAATGGTTGAGAGTGTTTAATTAAACCAGAGAAGACACAGCCTTGCAGGAAGAAGTTAGTTTTAATAGAGAAGCTGCAAGCCCGCAACCTTTAGGGATTTTAGGCATATGCCTGACTTTCTATGAGATGTGAATATTATGATTCCACAACAGTGTAATTCATGTCTGTTTTCTCCTTCATTTCAGGGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTATGTATGTATTGCTATTTATACACTATTTTGAGCTTAAATGTTTGTATGCTCAGTTGAGTAGAAAAAAAAAATCTAGTTTCTGTGTTTTACACTACCTAAGATGTTTGCAAGACTTTGCAGTCACTCATAAAACTGTCTGATTCACTTTGTGCCTAACATTATTTGTTGCGAACACTTTCTGCTTATAGTATTTAATAGATTTAGGAAAATAGAACATCTACCCAATTGTGATGGAAGAATTATGAACCTATCAATGATCAGAATGGTACTTGCTTATGTGCGCAAACGCAGAAAGGCTCCTGTTAAAAATCAAATAAATTACAGGACACCGGATTTTAAGGATGGGAGTTTGGGTGCTAAAACATCCTAGGTATCTTAGGTTTGTTCTTAATTGTCAGGTTTAAGGAAACCCCTCTCCTCCTTCCTCTTCTTGTCTTTGTTTATTTTCCATTTTTCTTGGGTAGTTTGCTTGAGAAGTAACTTTCTACCCGAGCAAAGAATTTGATCCCTAAACATAAGTTACAAGTGCAGAAAATTGTCGTTTATTGTTTGCGAAGAAGTTCATTAATTGCTTATCAGTCTGTTTTCTCTTACTATATTTAATTTGTTCACAACCTTTATCTACTTACATTTGCATTCCATGTTGCTGTTCTCAGGGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTCCGCAAGCAGATTGAGAAATT</genome_strand>
        <mrna_strand>ACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGAAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTCCGCAAGCAGATTGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394572" ref_strand="+" ref_description="SGN-E394572 [TUS-14-J15](-)">
      <seq>acccagaggaggtgtttttgatgttgcacctcctctctgaacaaacccgtgaaggatagcgaatccaagcatcagctttggcaacttaaagacgggatgcatctagcaccttgaatttctggacttccttagatgaaaccaagtcgttgctttatcaaggagtagagagctcaatcgttatagcaaatgctcctatgtaaaccctaattatgacgattttcgttattacacagttaagaggctaaattcaacagataattacactgtggatgagcaaaagaaggataagtaagtattaaagaatacgactccactggggatcgaacccagaatctctggtttcgtagaccagcgccttatccattgggccatggagtctttgttgctacattagtttaacttttaattattaattgtgccacattaatttaattccgttaattggaagaattactgtttttagtataaataaaagtatcatctatctaaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="15882" stop="17034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16184" g_stop="16386" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="215" r_length="204" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16387" i_stop="16451" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16452" g_stop="16738" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="502" r_length="287" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E394572" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16184" e_stop="16386"/>
          <exon e_start="16452" e_stop="16738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTTGATGCTGCACTTCAT-TTTGAACAAACCCGTGAAGGATAGCGAATCCAAGCATCAGCTTTGGCAACTTAAAGACGGGATGCATCTAGCACCTTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACGATTTCTCGTGTTCACTTTCATGTAAAAGCGATTACTTTGTATTCATGGTGGAAATGAAAATGAAGTTTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTGTTTAGTATAAATAAGAGTATCATCTATCTAAATCAAACAACTGA</genome_strand>
        <mrna_strand>GTGTTTTTGATGTTGCACCTCCTCTCTGAACAAACCCGTGAAGGATAGCGAATCCAAGCATCAGCTTTGGCAACTTAAAGACGGGATGCATCTAGCACCTTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACG.................................................................ATTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTTTTTAGTATAAATAAAAGTATCATCTATCTAAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261115" ref_strand="+" ref_description="SGN-E261115 [cLEG-65-O20]">
      <seq>gcttgaatttctggacttccttagatgaaaccaagtcgttgctttatcaaggagtagagagctcaatcgttatagcaaatgctcctatgtaaaccctaattatgacgattttcgttattacacagttaagaggctaaattcaacagataattacactgtggatgagcaaaagaaggataagtaagtattaaagaatacgactccactggggatcgaacccagaatctctggtttcgtagaccagcgccttatccattgggccatggagtctttgttgctacattagtttaacttttaattattaattgtgccacattaatttaattccgttaattggaagaattactgtttttagtataaataaaagtatcatctatctaaatcaaacaactgatattttcaaattaaaattctattgcaaccggaaacttccagaagatgagtcggtgtaaatatataagttggaccaaagaaattacagcagctagcatttctgcaaaatcacttcaattttaacaattctccgaaatgcctgaatctcatttacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="15981" stop="17193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16280" g_stop="16386" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16387" i_stop="16451" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16452" g_stop="16893" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="549" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E261115" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16280" e_stop="16386"/>
          <exon e_start="16452" e_stop="16893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACGATTTCTCGTGTTCACTTTCATGTAAAAGCGATTACTTTGTATTCATGGTGGAAATGAAAATGAAGTTTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTGTTTAGTATAAATAAGAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGGACCAAAGAAATTACAGCAGCTAGCATTTCTGCAAAATCACTTCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGC</genome_strand>
        <mrna_strand>GCTTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACG.................................................................ATTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTTTTTAGTATAAATAAAAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGGACCAAAGAAATTACAGCAGCTAGCATTTCTGCAAAATCACTTCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261154" ref_strand="+" ref_description="SGN-E261154 [cLEG-65-P18]">
      <seq>ttgaatttctggacttccttagatgaaaccaagtcgttgctttatcaaggagtagagagctcaatcgttatagcaaatgctcctatgtaaaccctaattatgacgattttcgttattacacagttaagaggctaaattcaacagataattacactgtggatgagcaaaagaaggataagtaagtattaaagaatacgactccactggggatcgaacccagaatctctggtttcgtagaccagcgccttatccattgggccatggagtctttgttgctacattagtttaacttttaattattaattgtgccacattaatttaattccgttaattggaagaattactgtttttagtataaataaaagtatcatctatctaaatcaaacaactgatattttcaaattaaaattctattgcaaccggaaacttccagaagatgagtcggtgtaaatatataagttggaccaaagaaattacagcagctagcatttctgcaaaatcacttcaattttaacaattctccgaaatgcctgaatctcatttacgccggcggaggtcaccaccggaggagcggcttagggagatagaagttctcatatactcagcagaaggcctgaagaacgtgaaacacttgaccaggatgagaacctacgccgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="15982" stop="17306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16282" g_stop="16386" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16387" i_stop="16451" i_length="65">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16452" g_stop="17006" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="660" r_length="555" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E261154" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16282" e_stop="16386"/>
          <exon e_start="16452" e_stop="17006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACGATTTCTCGTGTTCACTTTCATGTAAAAGCGATTACTTTGTATTCATGGTGGAAATGAAAATGAAGTTTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTGTTTAGTATAAATAAGAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGGACCAAAGAAATTACAGCAGCTAGCATTTCTGCAAAATCACTTCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAGCACTTGACCAGGATGAGAACCTACGCCGAGGT</genome_strand>
        <mrna_strand>TTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACG.................................................................ATTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTTTTTAGTATAAATAAAAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGGACCAAAGAAATTACAGCAGCTAGCATTTCTGCAAAATCACTTCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAACACTTGACCAGGATGAGAACCTACGCCGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261226" ref_strand="+" ref_description="SGN-E261226 [cLEG-65-P19]">
      <seq>gaatactactccactggggatcgaacccagaatctctggtttcgtagaccagcgccttatccattgggccatggagtctttgttgctacattagtttaacttttaattattaattgtgccacattaatttaattccgctaattggaagaattactgtttttagtataaataaaagtatcatctatctaaatcaaacaactgatattttcaaattaaaattctattgcaaccggaaacttccagaagatgagtcggcgtaaatatataagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16237" stop="17109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16537" g_stop="16809" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E261226" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16537" e_stop="16809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTGTTTAGTATAAATAAGAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGG</genome_strand>
        <mrna_strand>GAATACTACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGCTAATTGGAAGAATTACTGTTTTTAGTATAAATAAAAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGCGTAAATATATAAGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370090" ref_strand="+" ref_description="SGN-E370090 [TUS-26-D24]">
      <seq>tcaattttaacaattctccgaaatgcctgaatctcatttacgccggcggaggtcaccaccggaggagcggcttagggagatagaagttctcatatactcagcagaaggcctgaagaacgtgaaacacttgaccaggatgagaacctacgccgaggtctacgtggtgaaagacgtccacgtggcaaaaaccaaaatagcggagcacaccggcgacggagacgacgggaccaatccaatatggaaccaggtggtgaaggtgaaatttcacgaaaagctgccggaaaatgacatcatggcggcgttaaacgtggatatttacgctcacggacacattcgagagaaaccggtggggagcgctcgagttttgctctccgatgtgttgaaggatactaaatcgccggaatcggagatgctggagaataatccgatccagtttatgacagtgttagtttggagaccttctggtaggccacaaggtgtgctcaacctgtgggtcccacctacagggcggttcctggttccgttgacttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16551" stop="17682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16851" g_stop="17382" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E370090" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16851" e_stop="17382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAGCACTTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAGCGGAGCACACCGGCGACGGAGACGACGGGACCAATCCAATATGGAACCAGGTGGTGAAGGTGAAATTTCACGAAAAGCTGCCGGAAAATGACATCATGGCGGCGTTAAACGTGGATATTTACGCTCACGGACACATTCGAGAGAAACCGGTGGGGAGCGCTCGAGTTTTGCTCTCCGATGTGTTGAAGGATACTAAATCGCCGGAATCGGAGATGCTGGAGAATAATCCGATCCAGTTTATGACAGTGTTAGTTTGGAGACCTTCTGGTAGGCCACAAGGTGTGCTCAACCTGTGGGTCCCACCTACAGGGCGGTTCCTGGTTCCGTTGACTTCG</genome_strand>
        <mrna_strand>TCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAACACTTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAGCGGAGCACACCGGCGACGGAGACGACGGGACCAATCCAATATGGAACCAGGTGGTGAAGGTGAAATTTCACGAAAAGCTGCCGGAAAATGACATCATGGCGGCGTTAAACGTGGATATTTACGCTCACGGACACATTCGAGAGAAACCGGTGGGGAGCGCTCGAGTTTTGCTCTCCGATGTGTTGAAGGATACTAAATCGCCGGAATCGGAGATGCTGGAGAATAATCCGATCCAGTTTATGACAGTGTTAGTTTGGAGACCTTCTGGTAGGCCACAAGGTGTGCTCAACCTGTGGGTCCCACCTACAGGGCGGTTCCTGGTTCCGTTGACTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259011" ref_strand="+" ref_description="SGN-E259011 [cLEG-41-E3]">
      <seq>tcaattttaacaattctccgaaatgcctgaatctcatttacgccggcggaggtcaccaccggaggagcggcttaaggagatagaagttctcatatactcagcagaaggcctgaagaacgtgaaacacttgaccaggatgagaacctacgccgaggtctacgtggtgaaagacgtccacgtggcaaaaaccaaaatagcggagcacaccggcgacggagacgacgggaccaatccaatatggaaccaggtggtgaaggtgaaatttcacgaaaagctgccggaaaatgacatcatggcggcgtttaacgtggatatttacgctcacggacacattcgagagaaaccggtggggagcgctcgagttttgctctccgatgtgttgaaggatactaaatcgccggaatcggagatgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="16551" stop="17568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16851" g_stop="17268" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E259011" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16851" e_stop="17268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAGCACTTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAGCGGAGCACACCGGCGACGGAGACGACGGGACCAATCCAATATGGAACCAGGTGGTGAAGGTGAAATTTCACGAAAAGCTGCCGGAAAATGACATCATGGCGGCGTTAAACGTGGATATTTACGCTCACGGACACATTCGAGAGAAACCGGTGGGGAGCGCTCGAGTTTTGCTCTCCGATGTGTTGAAGGATACTAAATCGCCGGAATCGGAGATGCTGGAG</genome_strand>
        <mrna_strand>TCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAAGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAACACTTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAGCGGAGCACACCGGCGACGGAGACGACGGGACCAATCCAATATGGAACCAGGTGGTGAAGGTGAAATTTCACGAAAAGCTGCCGGAAAATGACATCATGGCGGCGTTTAACGTGGATATTTACGCTCACGGACACATTCGAGAGAAACCGGTGGGGAGCGCTCGAGTTTTGCTCTCCGATGTGTTGAAGGATACTAAATCGCCGGAATCGGAGATGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="19853" stop="18807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19553" g_stop="19107" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19553" e_stop="19107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGA--GA-ATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGACAAATTTTTGCCAAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAG-CTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="19854" stop="18958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19232" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="19854" stop="18958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19554" g_stop="19249" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19554" e_stop="19249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330307" ref_strand="+" ref_description="SGN-E330307 [cTOD-4-P1]">
      <seq>aaaagcaagccttacagctttcgtaagccttttggcattacagagcgattcagtggatgatttcaggggacggaatttatggattgggctaagccagttcactacatttctatacgttcgattcatcattcttttgcatttttcctttctcttcagaaaacccgatacagcagataaactaaaaatgaagaaggagaagagatacaaatagccttcttttcaagttttccgctacttatttcattagagatgaacagataaatctttcaccaaatttcaaaaaacagttgcttaaccaattgaagaagtttgttgcttctggtgaactaagagcttctacaagcttcgatcgactcggtctgcagctactaaacctaatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="28567" stop="29549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28867" g_stop="29249" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E330307" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28867" e_stop="29249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCAAGCCTTAGAGCTTCCGTAAGCCTTTTGGCATTACAGAGCGATTCAATGGATGATTTCAGGGGACGGAATTTAGGGATTGGGCTAAGCCAGTTCACTACATTTCTATACGTTCGATTCATCATTCTTTTGCATTTTTCCTTTCTCTTCAGAAAACCCGATACAGCAGATAAACTAAAAATGAAGAAGGAGAAGAGATACAAATAGCCTTCTTTTCAAGTTTTCCGCTACTTATTTCATTAGAGATGAACAGATAAATTTTTCACCAAATTTCAAAAAACAGTTGCTTAACCAATTGAAGAAGTTTGTTGCTTCTGGTAAACTAAGAGCTTCTACAAGCTTCGATCGACTCGGTCTGCAGCTACTAAACCTAATCGCT</genome_strand>
        <mrna_strand>AAAAGCAAGCCTTACAGCTTTCGTAAGCCTTTTGGCATTACAGAGCGATTCAGTGGATGATTTCAGGGGACGGAATTTATGGATTGGGCTAAGCCAGTTCACTACATTTCTATACGTTCGATTCATCATTCTTTTGCATTTTTCCTTTCTCTTCAGAAAACCCGATACAGCAGATAAACTAAAAATGAAGAAGGAGAAGAGATACAAATAGCCTTCTTTTCAAGTTTTCCGCTACTTATTTCATTAGAGATGAACAGATAAATCTTTCACCAAATTTCAAAAAACAGTTGCTTAACCAATTGAAGAAGTTTGTTGCTTCTGGTGAACTAAGAGCTTCTACAAGCTTCGATCGACTCGGTCTGCAGCTACTAAACCTAATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311751" ref_strand="+" ref_description="SGN-E311751 [cLEZ-9-C22]">
      <seq>gtttaatcattctagtaatccatttctcaagagttctctttttcttctctgtattttactgaaaagaaaaaaatggagggtattaagaagttggctgttttcaccatttacatgatgatgcttgtcgctttcggaaatgtaggaggagcaatgggtgctggagaagaatcacctgcccctgcaccttcaatggagagtgctgctattactttgtttattcctgttttcatggctgcctttgcttctctggctgctttcttcttctaatcaatttttgtaatttgttactttctgcttggttgggattcatcatcttataagacaattttatttttgataaaaaaaaaaaaaaaaaactcgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="39517" stop="148400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39817" g_stop="40157" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40158" i_stop="41576" i_length="1419">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41577" g_stop="41605" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="369" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E311751" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39817" e_stop="40157"/>
          <exon e_start="41577" e_stop="41605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATCATTCTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTGGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTTGTTGGGATTTCATCATCTTATAAGACAATTTTATTTTTGATATGTGGATGTTTGGTGATTCACTACTGTATTTCCTTTTCAAACCTGTGTTCATATGTTTTACTTGAGCTAAGGGTCTTTTGGAAACACTCTCTACCCTCCCAAGGTAGGGTGAAGTGTGCGTAAACATTACCCTCTCCAGACCCCACTTATGGAATTACACCGAGTATTTGGTGAACATCATGAAAAAATAAATTAAGAAATGCTTAAACAAGACGCCAATACTATAACTCAAAATTACTGGCAAGCCAAATAGCAACCAAACATTAATATGTTCACTGTTGGAAAAAGGAAATTCTGGAAATAAGTTGTAATTCTTTTGATTAGTGTTGTGAACTTAGCGCAAGAACCAAGTTCAGATCACAACAGTATCATCATTTACACAAGAAATGTTGAGTATCGTATATATCAAAGTAACAATTTAGGGGATGGAATAGAAGTTGCATGCTTACAAGTCACTGTTGTTCTATTGAACCAAAGAGTTCCTCGAATGAACGTTTAGGGGCATCGGTACTAGCCACTATCTCCACGACTTTGTAATGAGATTCTGGATGGAGCAATGCCTCGACTGCAACTTCAGCTACCTGATCTCTAGATATTGAGCCTCGAAAAAGAGTATCCTAAATTGAGGGAAGAGAGAGTGTGCAACATTAGATGCAAAGAAGGACTTCTGGAATATTATTGAAATGGAACACTACAGGGGTAAGCATACATAATGTTACCTCTGGTTGCATGACTATATTCCCTTGTGGAGGATCGTTTTTTAGCCCACCAGGCCGAATTATTGTGTAGTTGATGCCAGATTTTCGAATGTATCTCTCAGCTTGAAGCTTTGCTACCAATACGAGTCCCATAACATTAAGGATTATATAGACTGGATTGAACAACTGACCCATTGCAGCCCCATTGACAAGAATTGAACTTATAAGGATGAACCTATCAATACCAAGTTTTTGGCATGCATCCACAAGGTTCACTGTGCCAAAATTATCAACCTGAAAAAATAAAACAATGATAGGATACGTTTCCTGATTTTAACCTAGTTAATCAGAGAAGTGAAAGCTGAATGCTCCAGAATTGTATCGTTTGGACCATTTCTTTTTAATAAAATTGCCCAGCACCATATTAGTTTCTACAACTGACGCTTCTAGATCCCAAGTGAAAGCTAAAGAGGGTTGAGTCAAAGAGCTGATACAGTAATCTCTGCCTCAACTTAACTCCAGAGAGGAAGTTCCAAAGGTTGGTTTGTCAAATGCACCAACTTTTAGCTACTGGAAACGGACTACTTACTTTTACAATAACTCGATTTCACACCCACAGTAGTTAACGTATGGGGAAGGAATACATTAAGTTTCATGGTGTTCATATTTTGGTTGTCCGGGGAGTTCTTCTAAAATGTGCAGACAAGTAAACAAAGAAATAGAAAAGGAAAACAATAAATGGAAAGTAGGA</genome_strand>
        <mrna_strand>GTTTAATCATTCTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTTGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTGGTTGGGA-TTCATCATCTTATAAGACAATTTTATTTTTGATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCGAGACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217397" ref_strand="+" ref_description="SGN-E217397 [cLEL-21-H3](-)">
      <seq>ggccgagtagtaatccatttctcaagagttctctttttcttctctgtattttactgaaaagaaaaaaatggagggtattaagaagttggctgttttcaccatttacatgatgatgcttgtcgctttcggaaatgtaggaggagcaatgggtgctggagaagaatcacctgcccctgcaccttcaatggagagtgctgctattactttgtttattcctgttttcatggctgcctttgcttctctggctgctttcttcttctaatcaatttttgtaatttgttactttctgcttggttgggattcatcatcttataagacaattttattttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="39529" stop="134941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39822" g_stop="40151" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40152" i_stop="41556" i_length="1405">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41557" g_stop="41575" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="348" r_length="19" r_score="0.684"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E217397" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39822" e_stop="40151"/>
          <exon e_start="41557" e_stop="41575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTCTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTGGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTTGTTGGGATTTCATCATCTTATAAGACAATTTTATTTTTGATATGTGGATGTTTGGTGATTCACTACTGTATTTCCTTTTCAAACCTGTGTTCATATGTTTTACTTGAGCTAAGGGTCTTTTGGAAACACTCTCTACCCTCCCAAGGTAGGGTGAAGTGTGCGTAAACATTACCCTCTCCAGACCCCACTTATGGAATTACACCGAGTATTTGGTGAACATCATGAAAAAATAAATTAAGAAATGCTTAAACAAGACGCCAATACTATAACTCAAAATTACTGGCAAGCCAAATAGCAACCAAACATTAATATGTTCACTGTTGGAAAAAGGAAATTCTGGAAATAAGTTGTAATTCTTTTGATTAGTGTTGTGAACTTAGCGCAAGAACCAAGTTCAGATCACAACAGTATCATCATTTACACAAGAAATGTTGAGTATCGTATATATCAAAGTAACAATTTAGGGGATGGAATAGAAGTTGCATGCTTACAAGTCACTGTTGTTCTATTGAACCAAAGAGTTCCTCGAATGAACGTTTAGGGGCATCGGTACTAGCCACTATCTCCACGACTTTGTAATGAGATTCTGGATGGAGCAATGCCTCGACTGCAACTTCAGCTACCTGATCTCTAGATATTGAGCCTCGAAAAAGAGTATCCTAAATTGAGGGAAGAGAGAGTGTGCAACATTAGATGCAAAGAAGGACTTCTGGAATATTATTGAAATGGAACACTACAGGGGTAAGCATACATAATGTTACCTCTGGTTGCATGACTATATTCCCTTGTGGAGGATCGTTTTTTAGCCCACCAGGCCGAATTATTGTGTAGTTGATGCCAGATTTTCGAATGTATCTCTCAGCTTGAAGCTTTGCTACCAATACGAGTCCCATAACATTAAGGATTATATAGACTGGATTGAACAACTGACCCATTGCAGCCCCATTGACAAGAATTGAACTTATAAGGATGAACCTATCAATACCAAGTTTTTGGCATGCATCCACAAGGTTCACTGTGCCAAAATTATCAACCTGAAAAAATAAAACAATGATAGGATACGTTTCCTGATTTTAACCTAGTTAATCAGAGAAGTGAAAGCTGAATGCTCCAGAATTGTATCGTTTGGACCATTTCTTTTTAATAAAATTGCCCAGCACCATATTAGTTTCTACAACTGACGCTTCTAGATCCCAAGTGAAAGCTAAAGAGGGTTGAGTCAAAGAGCTGATACAGTAATCTCTGCCTCAACTTAACTCCAGAGAGGAAGTTCCAAAGGTTGGTTTGTCAAATGCACCAACTTTTAGCTACTGGAAACGGACTACTTACTTTTACAATAACTCGATTTCACACCCACAGTAGTTAACGTATGGGGAAGGAATACATTAAGTTTCATGGTGTTCATATTTTGGTTGTCCGGGGAGTTCTTCTAAAATGTGCAGACAAGTAAACAAAGAAATA</genome_strand>
        <mrna_strand>GGCCGAGTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTTGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTGGTTGGGA-TTCATCATCTTATAAGACAATTTTATTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707620" ref_strand="+" ref_description="SGN-E707620 [FA33CA12]">
      <seq>cctatattctctgtccacactaaaaatcacatttttccatcttaaaccaacaacatggaaggaagtgaaattaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaacacagggaagaggattgttgagcagcttttggctaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctgttttacccgaagcaaacccttttcttcaaattgtgaaaaccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccaatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattgataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatccagtctatataatccttaatgttatgggactcgtattggtagcaaagcttcaagctgagagatacattcgaaaatctggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaagggaatatagtcatgcaaccagaggatactctttttcgaggctcaatatctagagatcaggtagctgaagttgcagtcgaggcattgctccatccagaatctcattacaaagtcgtggagatagtggctagtaccgatgcccctaaacgttcattcgaggaactctttggttcaatagaacaacagtgacttgtaagcatgcaacttctattccatcccctaaatgttactttgatatatacgatactcaacatttcttgtgtaaatgatgatactgttgtgatctgaacttgtttctgcgctaagttcacacactaatcaaaagaatacaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44298" stop="40158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43997" g_stop="43944" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="255" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="375" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="648" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40773" g_stop="40450" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="968" r_length="320" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E707620" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>972</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43997" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACATTTCTTGTGTAAATGATGATACTGTTGTGATCTGAACTTGGTTCTTGCGCTAAGTTCACAACACTAATCAAAAGAATTACAACTTATTTCCAGA</genome_strand>
        <mrna_strand>CCTATATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAAC................................................................................................ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG......................................................................................................GATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAA-TGTTACTTTGATATATACGATACTCAACATTTCTTGTGTAAATGATGATACTGTTGTGATCTGAACTTGTTTC-TGCGCTAAGTTCAC-ACACTAATCAAAAGAA-TACAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286719" ref_strand="+" ref_description="SGN-E286719 [cLES-14-H5]">
      <seq>ctggtgggctaaaaaacgatcctccacaagggaatatagtcatgcaaccagaggatactctttttcgaggctcaatatctagagatcaggtagctgaagttgcagttgaggcattgctccatccagaatctcattacaaagtcgtggagatagtggctagtaccgatgcccctaaacgttcattcgaggaactctttggttcaatagaacaacagtgacttgtaagcatgcaacttctattccatcccctaaattgttactttgatatatacgatactaacatttcttgtgtaaatgatgatactgttgtgatctgaatttggttcttgcgctaagttcacaacactaatcaaaagaattacaacttatttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="41228" stop="40149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40928" g_stop="40876" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40773" g_stop="40450" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="376" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E286719" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40928" e_stop="40876"/>
          <exon e_start="40773" e_stop="40450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACATTTCTTGTGTAAATGATGATACTGTTGTGATCTGAACTTGGTTCTTGCGCTAAGTTCACAACACTAATCAAAAGAATTACAACTTATTTCCAGA</genome_strand>
        <mrna_strand>CTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG......................................................................................................GATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTTGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACT-AACATTTCTTGTGTAAATGATGATACTGTTGTGATCTGAATTTGGTTCTTGCGCTAAGTTCACAACACTAATCAAAAGAATTACAACTTATTTCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432443" ref_strand="-" ref_description="SGN-E432443 [STM-57-E13]">
      <seq>aaagccgatgtgacagagggatcagctaaactagctgatgccattggtgatgattctgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattaataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatcccgtctatataatccttaacgttatgggactcgtattggtagcaaagcttcaagctgagagacacattcgtaaatctggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaaggaaatatagtcatgcaaccagaggataccctttttcgaggctcaatatctagagatcaggtagctgaagttgcagtcgaggcattgctccatccagaatctcattacaaagtcgtggagatagtggctagtacagatgcccctaaacgttcattcgaggaactctttggttcaatagaacaacagtgacttgtaagcatgctacttttattccatccactaaaatgtttttttgatatatacgatactcaacatttctcttgtgtaaatgatgatgctgttgtgatctgaacttggttcttgcaccaagttcacaacactactcaaaagaaaagataaaaagaattacaagtattatttccaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="42769" stop="40168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42469" g_stop="42353" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="390" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.856" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40773" g_stop="40469" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="697" r_length="307" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E432443" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432443" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42469" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACA-TT-TCTTGTGTAAATGATGATACTGTTGTGATCTGAACTTGGTTCTTGCGCTAAGTTCACAACACTAATCAAAAGA</genome_strand>
        <mrna_strand>AAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCTGATGCCATTGGTGATGATTCTGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTAATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCCGTCTATATAATCCTTAACGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGACACATTCGTAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGAAATATAGTCATGCAACCAGAG......................................................................................................GATACCCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACAGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCTACTTTTATTCCATCCACTAAAATGTTTTTTTGATATATACGATACTCAACATTTCTCTTGTGTAAATGATGATGCTGTTGTGATCTGAACTTGGTTCTTGCACCAAGTTCACAACACTACTCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708386" ref_strand="+" ref_description="SGN-E708386 [FA35CE04]">
      <seq>cacatctccatacattctctgtccacactaaaaatcacatttttccatcttaaaccaacaacatggaaggaagtgaaattaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaacacagggaagaggattgttgagcagcttttggctaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctgttttacccgaagcaaacccttttcttcaaattgtgaaaaccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccaatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattgataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatccagtctatataatccttaatgttatgggactcgtattggtagcaaagcttcaagctgagagatacattcgaaaatctggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaagggaatatagtcatgcaaccagaggatactctttttcgaggctcaatatctagagatcaggtagctgaagttgcagtcgaggcattgctccatccagaatctcattacaaagtcgtggagatagtggctagtaccgatgcccctaaacgttcattcgaggaactctttggttncatagaacaacagtgacttgtaagcatgcaacttctattccatcccctaaattgttactttgatatatacgatactcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44305" stop="40243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44005" g_stop="43944" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="263" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="383" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="656" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40773" g_stop="40543" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="887" r_length="231" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E708386" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44005" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACAT</genome_strand>
        <mrna_strand>CACATCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAAC................................................................................................ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG......................................................................................................GATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTNCATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432442" ref_strand="+" ref_description="SGN-E432442 [STM-57-E13]">
      <seq>taaaaatcatatttttctatcttaagccaacaacatggaaggaagtgaaattaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaatacagggaagaggattgttgagcagcttttgactaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctaccttacccgaaggaaaccctcttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagctgatgccattggtgatgattctgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattaataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatcccgtctatataatccttaacgttatgggactcgtattggtagcaaagcttcaagctgagagacacattcgtaaatctggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaagggaatatagtcatgcaaccagaggataccctttttcgaggctcaatatctagagatcaggtagctgaaagtgcagtcgaggcattgctccatccagaatctcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44151" stop="40391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43977" g_stop="43944" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="355" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="628" r_length="273" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40773" g_stop="40691" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="711" r_length="83" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E432442" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43977" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTA</genome_strand>
        <mrna_strand>TAAAAATCATATTTTTCTATCTTAAGCCAACAAC................................................................................................ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAATACAGGGAAGAGGATTGTTGAGCAGCTTTTGACTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTACCTTACCCGAAGGAAACCCTCTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCTGATGCCATTGGTGATGATTCTGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTAATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCCGTCTATATAATCCTTAACGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGACACATTCGTAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG......................................................................................................GATACCCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAAGTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401612" ref_strand="+" ref_description="SGN-E401612 [PPC-4-B24]">
      <seq>taaaaatcatatttttctatcttaagccaacaacatggaaggaagtgaaattaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaatacagggaagaggattgttgagcagcttttgactaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctaccttacccgaaggaaaccctcttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagctgatgccattggtgatgattctgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattaataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatcccgtctatataatccttaacgttatgggactcgtattggtagcaaagcttcaagctgagagacacattcgtaaatctggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaaggaaatatagtcatgcaaccagaggataccctttttcgaggctcaatatctagagatcaggtagctgaagttgcagtcgaggcattgctccatccagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44151" stop="40396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43977" g_stop="43944" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="235" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="355" r_length="120" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="628" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.856" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40773" g_stop="40696" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="706" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E401612" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43977" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCT</genome_strand>
        <mrna_strand>TAAAAATCATATTTTTCTATCTTAAGCCAACAAC................................................................................................ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAATACAGGGAAGAGGATTGTTGAGCAGCTTTTGACTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTACCTTACCCGAAGGAAACCCTCTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCTGATGCCATTGGTGATGATTCTGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTAATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCCGTCTATATAATCCTTAACGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGACACATTCGTAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGAAATATAGTCATGCAACCAGAG......................................................................................................GATACCCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350900" ref_strand="+" ref_description="SGN-E350900 [cTOS-7-D17]">
      <seq>taaatctgttttacccgaagcaaacccttttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccaatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattgataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatccagtctatataatccttaatgttatgggactcgtattggtagcaaagcttcaagctgagagatacattcgaaaatatggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaagggaatatagtcatgcaaccagaggatactctttttcgaggctcaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="43986" stop="40447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43686" g_stop="43647" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="160" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="433" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40773" g_stop="40747" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="460" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E350900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43686" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTTCGAGGCTCAATATCT</genome_strand>
        <mrna_strand>TAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATATGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG......................................................................................................GATACTCTTTTTCGAGGCTCAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356948" ref_strand="+" ref_description="SGN-E356948 [cTOS-22-F6]">
      <seq>taaatctgttttacccgaagcaaacccttttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccaatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttgataattttggcacagtgaaccttgtggatgcatgccaaaaacttggtattgataggttcatccttataagttcaattcttgtcaatggggctgcaatgggtcagttgttcaatccagtctatataatccttaatgttatgggactcgtattggtagcaaagcttcaagctgagagatacattcgaaaatatggcatcaactacacaataattcggcctggtgggctaaaaaacgatcctccacaanggaatatagtcatgcaaccagaagatactcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="43986" stop="40564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43686" g_stop="43647" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="160" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41148" g_stop="40876" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="433" r_length="273" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.856" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40773" g_stop="40762" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="445" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E356948" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43686" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40876"/>
          <exon e_start="40773" e_stop="40762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAGGTAACATTATGTATGCTTACCCCTGTAGTGTTCCATTTCAATAATATTCCAGAAGTCCTTCTTTGCATCTAATGTTGCACACTCTCTCTTCCCTCAATTTAGGATACTCTTTTT</genome_strand>
        <mrna_strand>TAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATATGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAANGGAATATAGTCATGCAACCAGAA......................................................................................................GATACTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559703" ref_strand="+" ref_description="SGN-E559703 [19242]">
      <seq>caagacactggtttttcttgctcagaacccttctgctcttaacctccaatccatttttctgtccacactaaaaatcatatttttccatcttaagccaacaacatggaaggaagtgaaattaaggaggaaaaagaagcaggtataggtcagaagaagaaaatatttgttgctggtgcaactgggaatacagggcaagaggattgttgagcagcttttggctaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctgttttacccgaaggaaaccctcttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagctgatgccattggtgatgattctgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgaccccttggaaggttgataattttggcacagtgaaacttggtggatgcatgccaaaaacttggtattaataggttcatccttataacgttcaattcttgtcaaatggggctgccaatgggtcagttgttcaatccacgtctatattatccttaacgttatgggactcgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44343" stop="40693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44043" g_stop="43944" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="304" r_length="202" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42353" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="424" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41148" g_stop="40993" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="585" r_length="161" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E559703" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44043" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42353"/>
          <exon e_start="41148" e_stop="40993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACCACTGGTTTTTCTTGCTCAGAATCCTTTTGCTC-AAACCTCC-ATACA-TTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGG-AAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTACTTAAAGTTTAGTCATATTAGCTTGTTTATCACACTTTGCTTGTTGGTTTACAACTGCAAGAACATGTTGGTGTATTCAATATGGAATCCATAGTCTTTTGGAGAGTCCTCATCATCTTAAAATGTTTCTCGATACGCAGGAAAAAACAGGAAAATGTAAAAGGAGTGACCAACGTTATAGGAATTGAAGTTCAATTTTTTCCGCTTAAAAGAACGTTCTAGTTACTGAATTGGCATTCAAGTATCATCTTGAAGATAATAGACTAATAGTTGTTATGGTGATGGTAGTATTTATTGTTTTGTTTGTTTGCTCCTTTAATTTTACTTCATTACACCTCCTCTTGACATCTTTTAGCCAAGCGCTAGGTAGTTGAGAGTAATTCAAACTCGAAAAGCTTTAATCTCAATTTTTACTGTTATGCATAACAGTCTACTGGCATCAAGAGATTTATCATCTTCATTTCGTTTGGTGAAAGAAAAAAAGAATATTAGCACGTGGAGTGAACGTTTTCTGGCATCAAGAGATTTATCTTCTTCATTTCGTCTGGCGAAAGAAAAAAAGTATATTTGCACGTGGAGTGAAATTTCGAAAGCCTCCTTCTATCTTCCTACTTTCCATTTATTGTTTTCCTTTTCTATTTCTTTGTTTACTTGTCTGCACATTTTAGAAGAACTCCCCGGACAACCAAAATATGAACACCATGAAACTTAATGTATTCCTTCCCCATACGTTAACTACTGTGGGTGTGAAATCGAGTTATTGTAAAAGTAAGTAGTCCGTTTCCAGTAGCTAAAAGTTGGTGCATTTGACAAACCAACCTTTGGAACTTCCTCTCTGGAGTTAAGTTGAGGCAGAGATTACTGTATCAGCTCTTTGACTCAACCCTCTTTAGCTTTCACTTGGGATCTAGAAGCGTCAGTTGTAGAAACTAATATGGTGCTGGGCAATTTTATTAAAAAGAAATGGTCCAAACGATACAATTCTGGAGCATTCAGCTTTCACTTCTCTGATTAACTAGGTTAAAATCAGGAAACGTATCCTATCATTGTTTTATTTTTTCAGGTTGATAATTTTGGCACAGTGAACCTT-GTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAA-GTTCAATTCTTGTC-AATGGGGCTG-CAATGGGTCAGTTGTTCAATCCA-GTCTATATAATCCTTAATGTTATGGGACTCGTATTG</genome_strand>
        <mrna_strand>CAAGA-CACTGGTTTTTCTTGCTCAGAACCCTTCTGCTCTTAACCTCCAATCCATTTTTCTGTCCACACTAAAAATCATATTTTTCCATCTTAAGCCAACAAC................................................................................................ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATAGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAATACAGGGCAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGGAAACCCTCTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCTGATGCCATTGGTGATGATTCTGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACCCCTTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAATTTTGGCACAGTGAAACTTGGTGGATGCATGCCAAAAACTTGGTATTAATAGGTTCATCCTTATAACGTTCAATTCTTGTCAAATGGGGCTGCCAATGGGTCAGTTGTTCAATCCACGTCTATATTATCCTTAACGTTATGGGACTCGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367480" ref_strand="+" ref_description="SGN-E367480 [cLPT-7-I21]">
      <seq>aaacctccatacattctctgtccacactaaaaatcacattttttcatcttaaaccaacaacatggaaggaagtgaaatcaaggaggaaaaagaagcaggtattggtcagaagaagaaaatatttgttgctggtgcaactgggaacacagggaagaggattgttgagcagcttttggctaagggttttgctgttaaagctggggttcgtgatgttgacaaggctaaatctgttttacccgaagcaaacccttttcttcaaattgtgaaagccgatgtgacagagggatcagctaaactagccgatgccattggtgatgattccgatgcggtaatatgtgctacaggtttccagccttcgtggaacttgttgacaccttggaaggttagtcaacttcaatccacaaaatagtagtatttaccagatccttcacgcctgatcttgatgatcagcaaagtgagatattttgtgataggcttgatgggagtttccgtctcattttatgcaatgcaacgtcttttcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="44304" stop="41912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44004" g_stop="43944" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43847" g_stop="43647" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="262" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42472" g_stop="42212" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="524" r_length="262" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E367480" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44004" e_stop="43944"/>
          <exon e_start="43847" e_stop="43647"/>
          <exon e_start="42472" e_stop="42212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAACGTACGTCTCTGCAACAAGTTTTCACTTCAAATTTTCAAGAATCTTCTTTATGGGTAATGTATAATTGTGCTTTTAACTTTTCGTTTTTGATTACAGATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATTGTGAGTACTACTTTATTTTTCTTTAATTTGGGATTCTTGTTTGCTATAAATTGGTTAATAGCAAAGCTGAGGGGTTTTAGGGCTTTCAGAATCAAGTTGTCAATTTAATAATGTGGTTGTTGAATTAACTTTACTAATTATGGATAATCGAAATAGTATTAAGTTCTTATTATTACTATTAATTGAGAAATTTGACTTTGTTACATAAAGCATGAGTCTGAGCAATAATGATGAATTGTGTTGTTTGAACTCCTAAAAAATGTCAACAACTGAATGTCTGCTTCTCCAAAAGTAGTGTATTTTTGGACGAGAATGAAGAGTCCGCACAACTTAGCTATTGTAAAGTGAAATTCCAATTTATTAATGAGAATGGAGTTGTAATTTGAAATATTACGTGTTTTACAGTAAAATCTGCTTAATTTGTGTACATATGGAAGCTGAAAAACTTGGAGCTCAAATAATCCAATTTTTGATTTTGATTACGAGCCGGAAGCTCTTCTTAAGTTTTTCATAAGAAGCTATAAGTGGGGTGCTGTACTTTGGCGTCGTAGAGTTTTAAGTGCATGAGACTTTGGTATATTCAGTCCAACCAAATAAATATTACAACTTGCAAGTTTAGGTCACAAATTTTTGTTATTTTACCCCGTAAGATTTTTGTTTGGAACTTCCATTTCATTAGTAGGACAGCTTTCTCAAAACATTTTAGAGAATCTAGGAACAAGTGACTATTTATTACTCAGAGAGTCTCGCTTTCCAAACTAGAAAACTTCAAACTTTGTGTTTTTTGATATACATTCTTACCCGCCTATGCGTACTACATGTCTTGCCTTGTCATTTTTACTCAAGCTGTTCTGTAGTTAGTTTTGGAGATGAAATGAAAACTTTCTAACTTTATTATCAGATATTTCAGTTTTTGAATATAGCGATATCTTTAACCTTCTAACTTTGGCCCACAATAAGTCGAATTTCATTTTCAACATGGATAAGACTTGTACTACTTGAACACTGCAATGCTCCAAGTTTAGCTATTTGATATAGGCTAGAAAAAGCTGAATACATTCTTCTGCAAATGGGAAAAATAGATAGTGAAGGAAACATATACCTTCTCTGGAAAGGACCAACTTGTTTATGAATACTCCCGGTGGGAACTCCATATTGTTCTGATTGTTCTCAGGTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGC-ACGTCTTTTCAGTA</genome_strand>
        <mrna_strand>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTTCATCTTAAACCAACAAC................................................................................................ATGGAAGGAAGTGAAATCAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCGATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCAACGTCTTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745935" ref_strand="+" ref_description="SGN-E745935 [GI|47105467]">
      <seq>gaggggctcgagtaagaaaaatcatggctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactggggagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccatccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtctatgtttaagcacacgatttataaatatagttactcaaagatcgtagtgcaacaaatttatattgcaacatccttctctgcaatcttgtaacaatggaagtgaatgattgaaagagagcttattgacccccgtttcacgcgggcgaagggtctaaaggataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48477" stop="44500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48178" g_stop="48036" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="344" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="464" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="737" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45149" g_stop="44796" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="1091" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1092" polyA_stop="1105"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E745935" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1091</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48178" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGCTCGAGTAAGAAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATACGTA</genome_strand>
        <mrna_strand>GAGGGGCTCGAGTAAGAAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGGAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343929" ref_strand="+" ref_description="SGN-E343929 [cTOF-12-P20]">
      <seq>ggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccgtccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtctatgtttaagcacacgatttataaatatagttactcaaagatcgtagtgcaacaaatttatattgcaacatccttctctgcaatcttgtaacaatggaagtgaatgattaaaagagagcttattgacccccgtttcatgcgggcgaagggtctaaaggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="45565" stop="44500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45265" g_stop="45242" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45149" g_stop="44796" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="378" r_length="354" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="388"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E343929" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45265" e_stop="45242"/>
          <exon e_start="45149" e_stop="44796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATACGTA</genome_strand>
        <mrna_strand>GGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCGTCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTAAAAGAGAGCTTATTGACCCCCGTTTCATGCGGGCGAAGGGTCTAAAGGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343953" ref_strand="+" ref_description="SGN-E343953 [cTOF-12-K13]">
      <seq>ggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccgtccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtctatgtttaagcacacgatttataaatatagttactcaaagatcgtagtgcaacaaatttatattgcaacatccttctctgcaatcttgtaacaatggaagtgaatgattaaaagagagcttattgacccccgtttcatgcgggcgaagggtctaaaggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="45565" stop="44500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45265" g_stop="45242" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45149" g_stop="44796" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="378" r_length="354" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="388"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E343953" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45265" e_stop="45242"/>
          <exon e_start="45149" e_stop="44796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATACGTA</genome_strand>
        <mrna_strand>GGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCGTCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTAAAAGAGAGCTTATTGACCCCCGTTTCATGCGGGCGAAGGGTCTAAAGGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553904" ref_strand="-" ref_description="SGN-E553904 [cTSC-2-J21]">
      <seq>tgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctagtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccgtccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtctatgtttaagcacacgatttataaatatagttactcaaagatcgtagtgcaacaaatttatattgcaacatccttctctgcaatcttgtaacaatggaagtgaatgattaaaagagagcttattgacccccgtttcatgcgggcgaagggtctaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48118" stop="44505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47818" g_stop="47704" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="235" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="508" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45149" g_stop="44798" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="860" r_length="352" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E553904" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553904" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47818" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATACG</genome_strand>
        <mrna_strand>TGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTAGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCGTCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTAAAAGAGAGCTTATTGACCCCCGTTTCATGCGGGCGAAGGGTCTAAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319982" ref_strand="+" ref_description="SGN-E319982 [cTOB-31-C7]">
      <seq>ttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctagtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccgtccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtctatgtttaagcacacgatttataaatatagttactcaaagatcgtagtgcaacaaatttatattgcaacatccttctctgncatcttngtacaatggaagtgaatgattaaaagagagcttattgacccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48059" stop="44529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47759" g_stop="47704" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="449" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45149" g_stop="44829" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="770" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E319982" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47759" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCG</genome_strand>
        <mrna_strand>TTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTAGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCGTCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGNCATCTTNGTACAATGGAAGTGAATGATTAAAAGAGAGCTTATTGACCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433059" ref_strand="-" ref_description="SGN-E433059 [STM-57-P4]">
      <seq>agcagatgtcccagagggatcagcaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctccttgttagttccattctggtcaatggagctgcaatgggccagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatatttggagatttggcatcaattacacaataataaggcctggtgggctaaaaaacgatccccctcaaggaaacattgtaatggaacaagaggatacccttttcgaaggctcaatatttagagatcaggtagctgaagtagcagttgaggcattactccatccagaatttcattacaaagttgtggagatagtagcttgtactgaagcccctaaacgttcattcaaggaactatttggttccattaaacagcagtagcttgtcaagatgatgttttctgtctatgtttatacccatgatttataaatatagttactcaaagaccccaatgcaacaaatttatattgcaacatttttttttgcaattttgtaacaatggaagtgaatgattaaaagagagctaatggaaaaaaaaaaaaaaaaaaaaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="47454" stop="44535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47154" g_stop="47040" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="388" r_length="273" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45149" g_stop="44840" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="698" r_length="310" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="726"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E433059" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433059" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47154" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTT</genome_strand>
        <mrna_strand>AGCAGATGTCCCAGAGGGATCAGCAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTTGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGCCAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTTGGAGATTTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCCCCTCAAGGAAACATTGTAATGGAACAAGAG............................................................................................GATACCCTTTTCGAAGGCTCAATATTTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCATTACTCCATCCAGAATTTCATTACAAAGTTGTGGAGATAGTAGCTTGTACTGAAGCCCCTAAACGTTCATTCAAGGAACTATTTGGTTCCATTAAACAGCAGTAGCTTGTCAAGATGATGTTTTCTGTCTATGTTTATACCCATGATTTATAAATATAGTTACTCAAAGACCCCAATGCAACAAATTTATATTGCAACATTTTTTTTTGCAATTTTGTAACAATGGAAGTGAATGATTAAAAGAGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710616" ref_strand="+" ref_description="SGN-E710616 [FA55DH07]">
      <seq>ataaccttctctcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccatcccgaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtaccttgtcaagatgatgttttatgtctatgtttaagcacaccatttataaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48370" stop="44633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48070" g_stop="48036" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="236" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="356" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="629" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45149" g_stop="44933" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="846" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E710616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48070" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATAT</genome_strand>
        <mrna_strand>ATAACCTTCTCTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCCGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTACCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACCATTTATAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729431" ref_strand="+" ref_description="SGN-E729431 [LA21AB10]">
      <seq>atggctactgccactggtctcttcttccttaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccatccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48455" stop="44660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48155" g_stop="48036" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="320" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="440" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="713" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45149" g_stop="44960" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="903" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E729431" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48155" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCT</genome_strand>
        <mrna_strand>ATGGCTACTGCCACTGGTCTCTTCTTCCTT-AAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701161" ref_strand="+" ref_description="SGN-E701161 [FA15AG09]">
      <seq>atcatttctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttctgcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccatccagaatctcattacaaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaggaattatttggttctataaaacagcagtagcttgtcaagatgatgttttatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48407" stop="44660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48107" g_stop="48036" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="273" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="393" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="666" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45149" g_stop="44960" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="855" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E701161" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48107" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCT</genome_strand>
        <mrna_strand>ATCATTTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCTGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTC-AGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730696" ref_strand="+" ref_description="SGN-E730696 [LA24DF06]">
      <seq>caatatcatggctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaggctcgatatctagagatcaggtagctgaagtagcagttgaggcactactccatccagaatctcattancaagtcgtggagatagtagctcgtactgatgcccctaaacgttcattcaaggaattaatttggttctataaaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48461" stop="44690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48162" g_stop="48036" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="328" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="448" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="721" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45149" g_stop="44990" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="882" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E730696" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48162" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="44990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATT-ATTTGGTTCTATAAAACAGC</genome_strand>
        <mrna_strand>CAATATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTANCAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTAATTTGGTTCTATAAAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325940" ref_strand="+" ref_description="SGN-E325940 [cTOC-12-F19]">
      <seq>gctgttaaagctggggttcttgatgttgataaagctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctagtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcgaagatctggcatcaattacacaataataaggcctggtgggctaaaaaacgatccacctcaaggaaacatcgtaatggaacaagaggataccctttacgaaagctcgatatctagagatcaggtagctgaagtagcagttgaagcactactccgtccagaatctcattacaaagtcgtggagatagtaactcgtactgatgcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48078" stop="44730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47778" g_stop="47704" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="195" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45514" g_stop="45242" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="468" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45149" g_stop="45030" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="588" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E325940" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47778" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45242"/>
          <exon e_start="45149" e_stop="45030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAGGTAGCAATATGCAGCTTACTCGTTGTCTGATTACGTGTATGTGCGCCATATGATTTTCCTAATATTCTCCTTGCTTTTCCTTTAAAATGTAGGATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCT</genome_strand>
        <mrna_strand>GCTGTTAAAGCTGGGGTTCTTGATGTTGATAAAGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTAGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG............................................................................................GATACCCTTTACGAAAGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAAGCACTACTCCGTCCAGAATCTCATTACAAAGTCGTGGAGATAGTAACTCGTACTGATGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731746" ref_strand="+" ref_description="SGN-E731746 [LA28AC07]">
      <seq>aaaataatggaaactgccaaatggaatcttcatccttagggggggggcttgtctatcatctcggggcgggcgtcatgtttttcattttgtcaataaagttcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaataaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactaactgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttagaagattcctcctcgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctcctagcagagcaatatattcgaagatctggcttcaattacacaataataaggcctggtgggctaaaaaacgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48395" stop="44972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48161" g_stop="48036" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.770"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="328" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="448" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45272" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="691" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E731746" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48161" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCATGGCTACTGCC-ACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTC-TGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCA</genome_strand>
        <mrna_strand>AAAATAATGGAAACTGCCAAATGGAATCTTCATCCTTAGGGGGGGGGC-TTGTCTATCATCTCGGGGCGGGCGTCATGTTTTTCATTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAATAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAACTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAGAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCTAGCAGAGCAATATATTCGAAGATCTGGCTTCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402813" ref_strand="+" ref_description="SGN-E402813 [PPC-8-F2]">
      <seq>cactggtctcttcttccttacaacctctgccttttttgttacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcgactcagagcagcaaatatagaaggaagtgaaattgaaggaaaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgaacaacttctggcaaagggttttgctgttaaggctggggttcttgatgttgacaaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcagatgtcacagagggatcagcaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaacccttgttgaagcatgccgaacacttggtgttaaaagattcctccttgttagttccattctggtcaatggagctgcaatgggccagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagcaaagctccaagcagagcaatatattcggagatctggcatccattacacaataataaggcctggtgggctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48444" stop="44981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48144" g_stop="48036" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="310" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="430" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45281" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="665" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E402813" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48144" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAA-CCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAA</genome_strand>
        <mrna_strand>CACTGGTCTCTTCTTCCTTACAACCTCTGCCTTTTTTGTTACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGACTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGGAAGTGAAATTGAAGGAAAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAACAACTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGACAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCAGATGTCACAGAGGGATCAGCAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTTGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGCCAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGGAGATCTGGCATCCATTACACAATAATAAGGCCTGGTGGGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433058" ref_strand="+" ref_description="SGN-E433058 [STM-57-P4]">
      <seq>cactggcctcttcttccttacaacctctgccttttttgttacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcgactcagagcagcaaatatagaaggaagtgaaattgaaggaaaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgaacaacttctggcaaagggttttgctgttaaggctggggttcttgatgttgacaaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcagatgtcacagagggatcagcaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctccttgttagttccattctggtcaatggagctgcaatgggccagttgttcaatgcagcatatgtatttctcaatgttcttggactgacattgatagcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48444" stop="45049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48144" g_stop="48036" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="310" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="430" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45349" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="596" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E433058" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48144" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGC</genome_strand>
        <mrna_strand>CACTGGCCTCTTCTTCCTTACAACCTCTGCCTTTTTTGTTACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGACTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGGAAGTGAAATTGAAGGAAAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAACAACTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGACAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCAGATGTCACAGAGGGATCAGCAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTTGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGCCAGTTGTTCAATGCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359162" ref_strand="+" ref_description="SGN-E359162 [cLHT-11-K13]">
      <seq>aaaaatcatggctactgccactggtctctttttccttacaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagctcactcttttcggctcagagcagcaaatatagaagaaagtgaaattgaaggaaaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgttacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctccttgttagttccattctggtcaatggagctgcaatgggacagttgttcaatccagcatatgtatttctcaatgttcttggactgacattgatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48462" stop="45054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48162" g_stop="48036" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="328" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="448" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45354" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="609" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E359162" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48162" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGC</genome_strand>
        <mrna_strand>AAAAATCATGGCTACTGCCACTGGTCTCTTTTTCCTTACAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGCTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAGAAAGTGAAATTGAAGGAAAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTTACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTTGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265044" ref_strand="+" ref_description="SGN-E265044 [cLEI-2-E10]">
      <seq>aatcatggctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaaaaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttggtgttaaaagattcctcctcgttagttccattctagtcaatggagctgcaatgggacagttgttcaatccaacatatgtatttctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48459" stop="45077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48159" g_stop="48036" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="325" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="445" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45377" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="583" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E265044" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48159" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAAT</genome_strand>
        <mrna_strand>AATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAAAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTAGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAACATATGTATTTCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311978" ref_strand="+" ref_description="SGN-E311978 [cTOA-16-A3]">
      <seq>ctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaaaaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggatcttttggctccatggaaggttgataactttggcacagtaaaccttgttgaagcatgccgaacacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48451" stop="45166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48151" g_stop="48036" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="317" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="437" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45466" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="486" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E311978" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48151" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTG</genome_strand>
        <mrna_strand>CTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAAAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATCTTTTGGCTCCATGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317440" ref_strand="+" ref_description="SGN-E317440 [cTOA-28-N5]">
      <seq>tctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaaaaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttggctccatggaaagttgataactttggcacagtaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48438" stop="45189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48138" g_stop="48036" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="304" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47040" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="424" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45514" g_stop="45489" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="450" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E317440" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48138" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47040"/>
          <exon e_start="45514" e_stop="45489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAGGTTAGTTGCTACCTTCCCATCCTGTTTTACTTTTAACCTAGCAGTTTACTTATCTTTTCTGAAATTTTATGGTTATGTTTTCTCTTTATGAAATACTGATAGACTCATTTGGATGATCTTTATAATAACTTGAATTGCCGGACGCAAATCCGCTCAAAGGAAAAAGAAAAAAAAGCCAAAATATAATAATTAATAAGATGAAAACAAAAGAAAGAAGTGTTGATTAAGTTTGTCAAGAGTCTATGACTAATTTCAGTTACAGAAGCCTCTTTACATGATGACACCCTTTCCACCGTTGCTACCCATGCACACATTCTTGGAATTGGAAAAATATTACAAAGTCTTTTTTGTTCTTTTAAGATTCACAATGGAGACTTTTATGAGTATGATACCACAAGATATTGCTGCTGACACCTCATATTGTAGATAGGGTCTTTCGAGTTAAGGAAACTTCATTCCATTGACGATTTGTCTACACTGCAGAAAAGTTAATGGAAGACTGAACAGTTTCATGTTACTAATATTTTTTTTTCTGTTTATGGAGACTTTTCATTCTTTTCTCAGAATCCAGGGGAGCAGGTTGTTATTATCAATTGTTTCTCTGATGGGGTTGTTGGTTCAATTGTTTCTTCTTTTTTTCTCCTTTTCCCCTGCTTTTTGTGCTACTATTAATCCATCCTAGGTCTGCCATTTAAGCTAATTTCAAATTTGAACAGTTTAGTACGCCAATTTAAACTTTAAGATCTTAGCTTCATAATAATGCCTGTTATAACGCCTGGAAAACAGGAATCAAGAATGGCGTGGTTAAGCAGGTTAAGGCCTACTAGGTTGAACTCAGAATGGATCTACTGTCAGAAAATCAATTATTGTTGAACCGTTGGTCGTGTTTCAGGTTTATGAAAGAATTCCTTGCCTGTTAAGTAAAGCACCATTCTTGATTTCCTTCCATAGCTCTCAACCGGATTGGATGTGATTGAGGATCTCCAGAGGCACACCAAATAAGCTAATGCCAGAAATTATAATAGAATAACATAAGTAACCTGTGGGAGCTTCGAGAAAAAGTTATTTTGTACACTTATCTGTCCGTTCCGCAGATGAAGCAAACATCATATCGGTTCTGATGTTTGCTTAGGGGTTGAATGCTTAATACAATCAAAAAGTTGAGAAGGCTTCTCGAATGTTTTCAAGCAAAAACTTGAGAGCAAGACTGGAAATGTTCTAAAATGTATAGGGTGCTAACGTATATCATCTTATTTCCTTGGCTTGCTTTCACCTTAGATTTGTTTATGTTCCTTCTACACATTTATTATGGCCAAAAGGCCTTTTGTTGATGTCTTGCCTTCCAGATCATCAAACTCACAACCTTCTCTTGGTTATTCTACTTGAGTAAATTATGAAGCAATTATCAGATCTTCGAGTTGTTGAATCACTTCCCTAATTATTATTTTGGTGGGGTTTTGATGAATTATGCATCATTGTCCTTCCACTACTATTGTTTAATCCCTACTGTACCATTCTTGATCAGGTTGATAACTTTGGCACAGTAAACCT</genome_strand>
        <mrna_strand>TCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAAAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAACTTTGGCACAGTAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331260" ref_strand="+" ref_description="SGN-E331260 [cTOD-6-F15]">
      <seq>agaaaaatcatggctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaaaaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcacagagggatcagtaagactagctgatgccattgggaatgattcagatgcagtaatatgtgctacaggatttcggcgttcactggattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48464" stop="46752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48164" g_stop="48036" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47704" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="330" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544">
            <donor d_prob="0.375" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47159" g_stop="47052" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="438" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E331260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48164" e_stop="48036"/>
          <exon e_start="47904" e_stop="47704"/>
          <exon e_start="47159" e_stop="47052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGGGTTTGTTAAACTTTTTAGAAATTAAAAGTAGAAGTTAATTGCTTTATCAGTAGTTGATTATGCAGCAAAGTATGCTACTTTGAGGGTTAGATGTTAAGCTAAAAGAAAGTTTTGTTAATAGAGGAAATGCCTTTAAATTTCACCTACTTATATTGGGTTGTCTGTCCAATTCTGTCTTTTTTTTTCTTTTTTTATCTTTCAATTTGAACAAATCTTGATCTTGCTTACACTCCTCCATCAACTTAAAGAGTTTGTTTTGGCTGATGTATTCAGGTGATACTTATTGTATTTTAGATAGGAAAGGATTAAAATTGGAGATTATGTCAAAACCTTTAAAATATGATAATTTCGTATAAAAGGTAATTGAATTTTATTTTTCAAACGAAAGGCATTGCAAATGTATTTAAAAAAATCTGGGAAAAGCTGCTTTTGAATGCAAGTGAAGAGCTAACTATGAAGTACAATGTTCACTTCTATTTTGTAAACCTTCGAGTTATTTCACTTGGAATGACGAAATCAATTCTAATATGTTATTTTCAGGTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTG</genome_strand>
        <mrna_strand>AGAAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAAAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266129" ref_strand="+" ref_description="SGN-E266129 [cLEI-6-N7]">
      <seq>aatcatggctactgccactggtctcttcttccttaaaacatcggccttttctatcacctctaaacggccctctgtttctctttttgtcaataaagttcactcttttcggctcagagcagcaaatatagaaaaaagtgaaattgaaggagaagaggaagtgggtatcagtgaaaagaagaaaatatttgttgctggtgcgactgggaacactgggaagaggattgttgagcagcttctggcaaagggttttgctgttaaggctggggttcttgatgttgataaggctaaatcaaccttaccgggtcaaaaccctgatcttcaaattgtgaaagcggatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="48459" stop="47401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48159" g_stop="48036" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47904" g_stop="47700" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="329" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E266129" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48159" e_stop="48036"/>
          <exon e_start="47904" e_stop="47700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAATGTAAGTCTCTTCTCTAACAAAAAGATCACATTTTTCCTTTCAATTCTCAAGATTACGTAATATTTCAAGAAAATATGCTTCTGCTGTTTGTGGGGTAAGTCATTTTGGTTTTGTATTTTGGTTGATTACAGATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGG</genome_strand>
        <mrna_strand>AATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT...................................................................................................................................ATAGAAAAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374972" ref_strand="+" ref_description="SGN-E374972 [TUS-36-A5](-)">
      <seq>ggaggtaacaatgcttcagctcgtaaacgcagagccgagcatgatgcaggtgatgaatcagctgatcatgaagccggaggagtaggtgaagcgatggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagttgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgatagtattatggtattcatctatttatccccactttgatattcaggatctgatgaagcacatgaatcttactttttctgttttagggaaaaactaaatggttaatgcattatgtaatatacaatttatgatgatcgtctctttcaactgaaaagttgcaattcacgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="50800" stop="49048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50500" g_stop="50415" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50414" i_stop="50146" i_length="269">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50145" g_stop="50089" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="143" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="285" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49699" g_stop="49349" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="636" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E374972" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50500" e_stop="50415"/>
          <exon e_start="50145" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGGGTGAGTTCCTAACTATAAAATATACATAGTCCAGCTATCATCAATATTTTCTAGTCTTGGGGATATCTTGTTTTTCTGCAGGTATGTTTTTTGGTAAGTGGTTTTCTGATAACTTTTATGTTCTTTCATCAAGTAAACAGAAGTAGATTGCAACTTCCTCACATTTATTTACTTTGATGATCTATCTATATGGTGTTTGCTTGTTTTATCTATTATGATGTTTCCTTGTAATGTTTATGTTTCTGAAGTGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</genome_strand>
        <mrna_strand>GGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGGTGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG.............................................................................................................................................................................................................................................................................TGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAACTGAAAAGTTGCAATTCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374973" ref_strand="+" ref_description="SGN-E374973 [TUS-36-A5]">
      <seq>gaggtaacaatgcttcagctcgtaaacgcagagccgagcatgatgcaggtgatgaatcagctgatcatgaagccggaggagtaggtgaagcgatggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagttgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgatagtattatggtattcatctatttatccccactttgatattcaggatctgatgaagcacatgaatcttactttttctgttttagggaaaaactaaatggttaatgcattatgtaatatacaatttatgatgatcgtctctttcaactgaaaagttgcaattcacgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="50799" stop="49049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50499" g_stop="50415" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50414" i_stop="50146" i_length="269">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50145" g_stop="50089" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="142" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="284" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49699" g_stop="49349" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="635" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E374973" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50499" e_stop="50415"/>
          <exon e_start="50145" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGGGTGAGTTCCTAACTATAAAATATACATAGTCCAGCTATCATCAATATTTTCTAGTCTTGGGGATATCTTGTTTTTCTGCAGGTATGTTTTTTGGTAAGTGGTTTTCTGATAACTTTTATGTTCTTTCATCAAGTAAACAGAAGTAGATTGCAACTTCCTCACATTTATTTACTTTGATGATCTATCTATATGGTGTTTGCTTGTTTTATCTATTATGATGTTTCCTTGTAATGTTTATGTTTCTGAAGTGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</genome_strand>
        <mrna_strand>GAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGGTGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG.............................................................................................................................................................................................................................................................................TGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAACTGAAAAGTTGCAATTCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227145" ref_strand="+" ref_description="SGN-E227145 [cLED-1-P12](-)">
      <seq>tggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagttgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgatagtattatggtattcatctatttatccccactttgatattcaggatctgatgaagcacatgaatcttactttttctgttttagggaaaaactaaatggttaatgcattatgtaatatacaatttatgatgatcgtctctttcaactgaaaagttgcaattcacgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="50437" stop="49048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50137" g_stop="50089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="191" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49699" g_stop="49349" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="542" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E227145" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50137" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</genome_strand>
        <mrna_strand>TGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAACTGAAAAGTTGCAATTCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344045" ref_strand="+" ref_description="SGN-E344045 [cTOF-12-L3]">
      <seq>atgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagttgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgatagtattatggtattcatctatttatccccactttgatattcaggatctgatgaagcacatgaatcttactttttctgttttagggaaaaactaaatggttaatgcattatgtaatatacaatttatgatgatcgtctctttcaactgaaaagttgcaattcacgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="50428" stop="49048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50128" g_stop="50089" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="182" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49699" g_stop="49349" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="533" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E344045" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50128" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</genome_strand>
        <mrna_strand>ATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAACTGAAAAGTTGCAATTCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227144" ref_strand="+" ref_description="SGN-E227144 [cLED-1-P12]">
      <seq>gaggtaacaatgcttcagctcgtaaacgcagagccgagcatgatgcaggtgatgaatcagctgatcatgaagccggaggagtagtcgaagcgatggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagttgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgatagtattatggtattcatctatttatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="50799" stop="49186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50499" g_stop="50415" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50414" i_stop="50146" i_length="269">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50145" g_stop="50089" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="142" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="284" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49699" g_stop="49486" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="498" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E227144" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50499" e_stop="50415"/>
          <exon e_start="50145" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGGGTGAGTTCCTAACTATAAAATATACATAGTCCAGCTATCATCAATATTTTCTAGTCTTGGGGATATCTTGTTTTTCTGCAGGTATGTTTTTTGGTAAGTGGTTTTCTGATAACTTTTATGTTCTTTCATCAAGTAAACAGAAGTAGATTGCAACTTCCTCACATTTATTTACTTTGATGATCTATCTATATGGTGTTTGCTTGTTTTATCTATTATGATGTTTCCTTGTAATGTTTATGTTTCTGAAGTGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCC</genome_strand>
        <mrna_strand>GAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGGTGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGT.............................................................................................................................................................................................................................................................................CGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335407" ref_strand="+" ref_description="SGN-E335407 [cTOE-2-F11]">
      <seq>gagcttaggagtgccagttcgaatgcaaagactgggggaggaacacttccaattactgccagaactttggaaacaattattcggctctcaactgcccatgccaagctgaagttgagaagacaggttttgaagtctgatgtagaagctgctcttcaagttctacattttgccatatatcatcaagaactgactgagatggaggaacgtgaacaagagagagcaaaggaattggggaagaagcgcagtactgaccatgatggaggtaacaatgcttcagctcgtaaacgcagagccgagcatgatgcaggtgatgaatcagctgatcatgaagccggaggagtaggtgaagcgatggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtcaacaatggggcgactgtaccttactcaaaggcggagatagagaaattattaaagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcggtccaattggagcgctcgcaagttcagntgtctcctttctgatggattgtccaagcctaactatatggggggatacaccatttgttattgaaccatagcttctctttatgtttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="51382" stop="49215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51082" g_stop="51053" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51052" i_stop="50969" i_length="84">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50968" g_stop="50876" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="123" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50875" i_stop="50636" i_length="240">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50635" g_stop="50415" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="344" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50414" i_stop="50146" i_length="269">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50145" g_stop="50089" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="401" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="543" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49699" g_stop="49515" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="728" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E335407" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51082" e_stop="51053"/>
          <exon e_start="50968" e_stop="50876"/>
          <exon e_start="50635" e_stop="50415"/>
          <exon e_start="50145" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTAGGAGTGCCAGTTCGAATGCAAAGGTTGGAATTTTATGTCTGATATCCAGATAACTAGCTTGTTATGCTCTTTATGTGATGTAACTGATTTTTCTTAATTTCCATTAGACTGGGGGAGGAACACTTCCGATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAGGTGAGGACTTATTTGATTACAAGTCTTATATAGGAAGATTGAAGTTCCCCATATATGCTTAGGATTAGAGGTTCACTGAATATAAAAACCATCATCAACAGAAATTGACCAGTTCTTGACTTTAATCAATGAATTTGGTAAATAACCAAAATTGAGTTTTCTAGTTTCATTCTTTCCATGATTATCTGCTCTGTATGGATCTATTTTGCTCAAAATTTGTTTCCATTTCTTTTCTGGCAGGTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGGGTGAGTTCCTAACTATAAAATATACATAGTCCAGCTATCATCAATATTTTCTAGTCTTGGGGATATCTTGTTTTTCTGCAGGTATGTTTTTTGGTAAGTGGTTTTCTGATAACTTTTATGTTCTTTCATCAAGTAAACAGAAGTAGATTGCAACTTCCTCACATTTATTTACTTTGATGATCTATCTATATGGTGTTTGCTTGTTTTATCTATTATGATGTTTCCTTGTAATGTTTATGTTTCTGAAGTGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGAT</genome_strand>
        <mrna_strand>GAGCTTAGGAGTGCCAGTTCGAATGCAAAG....................................................................................ACTGGGGGAGGAACACTTCCAATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAG................................................................................................................................................................................................................................................GTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGGTGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG.............................................................................................................................................................................................................................................................................TGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGNTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTATATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706113" ref_strand="+" ref_description="SGN-E706113 [FA29AB11]">
      <seq>gcaaaatgacaaggatgaaatgcccgtctatgttaagtataatcggatgctacatggtagaaattctactcggagcaagaaggatacattgaccatccagtttctcaagacttacattcattatgcaaaaaacaggatccatcctgagctgactgatgaggcatctgataacatagctactgcttatgccgagcttaggagtgccagttcgaatgcaaagactgggggaggaacacttccgattactgccagaactttggaaacaattattcggctctcaactgcccatgccaagctgaagttgagaagacaggttttgaagtctgatgtagaagctgctcttcaagttctacattttgccatatatcatcaagaactgactgagatggaggaacgtgaacaagagagagcaaaggaattggggaagaagcgcagtactgaccatgatggaggtaacaatgcttcagctcgtaaacgcagagccgagcatgatgcagatgatgaatcagctgatcatgaagccggaggagtaggtgttcttttggaaagtggtagtgaagcgatggaaactgatgatactccagcagctgagatcagcacatctcctgagagattgcaagcattcagtgcagcacttggtaggcacaggaacttacaacatgtggaacaaattccagttgctgatgtggagaatgttgtccacaatggggcgactgtaccttactcaaaggcggagatagagaaattattanagatgatggaagagaaaggccaattgtgggtacacagtgataccaatgtagtttacttcatgtaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="51765" stop="49333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51465" g_stop="51306" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51305" i_stop="51113" i_length="193">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51112" g_stop="51053" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="220" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51052" i_stop="50969" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50968" g_stop="50876" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="313" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50875" i_stop="50636" i_length="240">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50635" g_stop="50415" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="534" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50414" i_stop="50167" i_length="248">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50166" g_stop="50089" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="612" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49998" g_stop="49857" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="754" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49699" g_stop="49633" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="821" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E706113" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51465" e_stop="51306"/>
          <exon e_start="51112" e_stop="51053"/>
          <exon e_start="50968" e_stop="50876"/>
          <exon e_start="50635" e_stop="50415"/>
          <exon e_start="50166" e_stop="50089"/>
          <exon e_start="49998" e_stop="49857"/>
          <exon e_start="49699" e_stop="49633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGGATCCATCCTGAGCTGACTGATGAGGTAATTAAGTGTAACTTTTGCAGTTGCATAGCATCATTGCATTTTCATGCAGGATTAATTTCTTTATGCCTTGTAAATTTGAATTTTGAAATACTCCTTGAGAATTAGCTGTAATTAACCTTTGTCATATCTTAGCTCCCCTTGATCAATGTACTGCTCTCTTGCTGATATTTATAATGATAATCATTTGTAGGCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTTCGAATGCAAAGGTTGGAATTTTATGTCTGATATCCAGATAACTAGCTTGTTATGCTCTTTATGTGATGTAACTGATTTTTCTTAATTTCCATTAGACTGGGGGAGGAACACTTCCGATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAGGTGAGGACTTATTTGATTACAAGTCTTATATAGGAAGATTGAAGTTCCCCATATATGCTTAGGATTAGAGGTTCACTGAATATAAAAACCATCATCAACAGAAATTGACCAGTTCTTGACTTTAATCAATGAATTTGGTAAATAACCAAAATTGAGTTTTCTAGTTTCATTCTTTCCATGATTATCTGCTCTGTATGGATCTATTTTGCTCAAAATTTGTTTCCATTTCTTTTCTGGCAGGTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGGGTGAGTTCCTAACTATAAAATATACATAGTCCAGCTATCATCAATATTTTCTAGTCTTGGGGATATCTTGTTTTTCTGCAGGTATGTTTTTTGGTAAGTGGTTTTCTGATAACTTTTATGTTCTTTCATCAAGTAAACAGAAGTAGATTGCAACTTCCTCACATTTATTTACTTTGATGATCTATCTATATGGTGTTTGCTTGTTTTATCTATTATGATGTTTCCTTGTAATGTTTATGTTTCTGAAGTGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAGGTCTGTGTAATTAACTTTATGATCGTTGAATGCATTTACTTTTTACTCTGGGGTTGTCAATTATGGAACCTAACATCGCTGAACTTGCAGATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAGGTATGCAAGTACTTTGATTACAAATTTCTTTGATGTCCCTAGTTCCAAATGTATGTGTATATTACCTCTTAATTCACAACACTGAAATGTGTATCAGTTGGATACAATAGTTTTTGAATGTATAAACAGCTAACAGAGAAAGTGCTCTAATATGCAGATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCG</genome_strand>
        <mrna_strand>GCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGGATCCATCCTGAGCTGACTGATGAG.................................................................................................................................................................................................GCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTTCGAATGCAAAG....................................................................................ACTGGGGGAGGAACACTTCCGATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAG................................................................................................................................................................................................................................................GTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG........................................................................................................................................................................................................................................................TGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG..........................................................................................ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCCACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTANAG.............................................................................................................................................................ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472574" ref_strand="+" ref_description="SGN-E472574 [cSTB-29-A8]">
      <seq>ctccaacgaagaacattggacttccagactcgctgctctctcgttttgatttgttgtttattgttctggatcaaatggatcctggggttgatcgtcaaatttctgagcatgttttgcgcatgcatcggtatcgttctccaatagatggaggtagctcaacactagataatgattcaagatatgaagagcaaaatgacaaggatgaaatgcccgtctatgttaagtataatcggatgctacatggtagaaattcaactcggagcaaaaaggatacattgaccatccagtttctcaagacttacattcattatgcaaaaaacagaatccatcctgagctgactgatgaggcatctgataacatagctactgcttatgccgagcttaggagtgccagtacaaatgcaaagactgggggaggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52037" stop="50748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51737" g_stop="51588" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51587" i_stop="51503" i_length="85">
            <donor d_prob="0.672" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51502" g_stop="51306" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="347" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51305" i_stop="51113" i_length="193">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51112" g_stop="51053" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="407" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51052" i_stop="50969" i_length="84">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50968" g_stop="50953" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="423" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E472574" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51737" e_stop="51588"/>
          <exon e_start="51502" e_stop="51306"/>
          <exon e_start="51112" e_stop="51053"/>
          <exon e_start="50968" e_stop="50953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAGGTAGGTTGGCAGTTATGTTTGAAAATCTGCATGCATTGCCTTTTCCTAGTTTGTATGAATGAAGTGAATCTATTTTACCTTTTAGGTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGGATCCATCCTGAGCTGACTGATGAGGTAATTAAGTGTAACTTTTGCAGTTGCATAGCATCATTGCATTTTCATGCAGGATTAATTTCTTTATGCCTTGTAAATTTGAATTTTGAAATACTCCTTGAGAATTAGCTGTAATTAACCTTTGTCATATCTTAGCTCCCCTTGATCAATGTACTGCTCTCTTGCTGATATTTATAATGATAATCATTTGTAGGCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTTCGAATGCAAAGGTTGGAATTTTATGTCTGATATCCAGATAACTAGCTTGTTATGCTCTTTATGTGATGTAACTGATTTTTCTTAATTTCCATTAGACTGGGGGAGGAACAC</genome_strand>
        <mrna_strand>CTCCAACGAAGAACATTGGACTTCCAGACTCGCTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTTTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAG.....................................................................................GTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCAACTCGGAGCAAAAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGAATCCATCCTGAGCTGACTGATGAG.................................................................................................................................................................................................GCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTACAAATGCAAAG....................................................................................ACTGGGGGAGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251082" ref_strand="+" ref_description="SGN-E251082 [cLEG-17-K4]">
      <seq>ctccgttagcaatatcaactactgttcgtggttcttccggagttggtttgacagctgcagttacttctgatcaagaaacaggagaaagaaggctagaagctggtgccatggtacttgctgacagaggtgttgtttgcattgatgagtttgataaaatgaatgaccaagatcgagttgccatacatgaggttatggaacagcagactgtaaccattgctaaagcaggaattcatgcatccttgaatgctcgatgcagtgtagttgcagctgcaaatcccatatatggttcttacgaccgatcattaactccaacaaagaacattggacttccagactcactgctctctcgttttgatttgttgtttattgttctggatcaaatggatcctggggttgatcgtcaaatttctgagcatgttctgcgcatgcatcggtatcgttctccaatagatggaggtagctcaacactagataatgattcaagatatgaagagcaaaatgacaaggatgaaatgcccgtctatgttaagtataatcggatgctacatggtagaaattctactcggagcaaggaagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52500" stop="51078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52200" g_stop="52120" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52119" i_stop="52050" i_length="70">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52049" g_stop="51841" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="290" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51840" i_stop="51754" i_length="87">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51753" g_stop="51588" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="456" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51587" i_stop="51503" i_length="85">
            <donor d_prob="0.672" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51502" g_stop="51378" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="581" r_length="125" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E251082" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52200" e_stop="52120"/>
          <exon e_start="52049" e_stop="51841"/>
          <exon e_start="51753" e_stop="51588"/>
          <exon e_start="51502" e_stop="51378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAGGTAATTTTTTTTCAAAAGCAGAATCTACTTTGTATGTAAAGTAAACTGACAAATATGTACTTGGAAATAGGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCTGTAAGTTTTTCATAAACAGGTCCATCTAAATGCGTAATAGCCTTGAGATATGTATCATTTAACTTTTCTGTAATCTTGTTTTGACAGTACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAGGTAGGTTGGCAGTTATGTTTGAAAATCTGCATGCATTGCCTTTTCCTAGTTTGTATGAATGAAGTGAATCTATTTTACCTTTTAGGTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACA</genome_strand>
        <mrna_strand>CTCCGTTAGCAATATCAACTACTGTTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAG......................................................................GAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCT.......................................................................................TACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAG.....................................................................................GTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGGAAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317926" ref_strand="+" ref_description="SGN-E317926 [cTOA-30-M21]">
      <seq>aagaaagcagttgttctgctcatgcttggtggaattgaaaagaacttgaaaaatgggactcacttaagaggtgatataaacatgatgatggttggtgatccatctgttgccaagtctcagctgctgagagcaattatgaatattgctccgttagcaatatcaactactggtcgtggttcttccggagttggtttgacagctgcagttacttctgatcaagaaacaggagaaagaaggctagaagctggtgccatggtacttgctgacagaggtgttgtttgcattgatgagtttgataaaatgaatgaccaagatcgagttgccatacatgaggttatggaacagcagactgtaaccattgctaaagcaggaattcatgcatccttgaatgctcgatgcagtgtagttgcagctgcaaatcccatatatggttcttacgaccgatcattaactccaacaaagaacattggacttccagactcactgctctctcgttttgatttgttgtttattgttctggatcaaatggatcctgnggttgatcgtcaaatttctgagcatgttctgcgcatgcatcggtatcgttctccaatagatggaggtagctcaacactagataatgattcaagatatgaagagcaaaatgacaaggatgaaatgcccgtctatgntaagtataatcggatgctacatggtagaaattctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52853" stop="51096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52553" g_stop="52483" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52482" i_stop="52275" i_length="208">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52274" g_stop="52120" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="226" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52119" i_stop="52050" i_length="70">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52049" g_stop="51841" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="435" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51840" i_stop="51754" i_length="87">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51753" g_stop="51588" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="601" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51587" i_stop="51503" i_length="85">
            <donor d_prob="0.672" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51502" g_stop="51396" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="708" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E317926" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52553" e_stop="52483"/>
          <exon e_start="52274" e_stop="52120"/>
          <exon e_start="52049" e_stop="51841"/>
          <exon e_start="51753" e_stop="51588"/>
          <exon e_start="51502" e_stop="51396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGGGTAAGATAAACTATTTTACCTTCGGTAAGGCTACATTTTGCTGTCCTTGGCACTTAGCACCAATGCAGACATTACTGCTTGACCATGTGAACGCAGTCTTTTTTTCTCCAGTTCATTCAGACAACTATCATAATTTTTTATGTACTGTGACTCCTCTATATGAGATTGATTCTTGAGGTCTCACAACAACCATTTTTACTGTATTTAGTGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAGGTAATTTTTTTTCAAAAGCAGAATCTACTTTGTATGTAAAGTAAACTGACAAATATGTACTTGGAAATAGGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCTGTAAGTTTTTCATAAACAGGTCCATCTAAATGCGTAATAGCCTTGAGATATGTATCATTTAACTTTTCTGTAATCTTGTTTTGACAGTACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAGGTAGGTTGGCAGTTATGTTTGAAAATCTGCATGCATTGCCTTTTCCTAGTTTGTATGAATGAAGTGAATCTATTTTACCTTTTAGGTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACT</genome_strand>
        <mrna_strand>AAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGG................................................................................................................................................................................................................TGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAG......................................................................GAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCT.......................................................................................TACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGNGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAG.....................................................................................GTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGNTAAGTATAATCGGATGCTACATGGTAGAAATTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314141" ref_strand="+" ref_description="SGN-E314141 [cTOA-21-O19]">
      <seq>ctaattcactggcaccatctatttatgggcatttgtggataaagaaagcaggtgttctgctcatgcttggtggaattgaaaagaacttgaaaaatgggactcacttaagaggtgatataaacatgatgatggttggtgatccatctgttgccaagtctcagctgctgacagcaattatgaatattgctccgttagcaatatcaactactggacgtggttcttccggagttgggttgacagctgcagttacttctgatcaagaaacatgagaaagaaagctagaaactggtgccatggtacttgctgacagaggtgttgtttgcattgatgaatttgataaaatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="52894" stop="51669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52594" g_stop="52483" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52482" i_stop="52275" i_length="208">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52274" g_stop="52120" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="267" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52119" i_stop="52050" i_length="70">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52049" g_stop="51969" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="348" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E314141" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52594" e_stop="52483"/>
          <exon e_start="52274" e_stop="52120"/>
          <exon e_start="52049" e_stop="51969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGGGTAAGATAAACTATTTTACCTTCGGTAAGGCTACATTTTGCTGTCCTTGGCACTTAGCACCAATGCAGACATTACTGCTTGACCATGTGAACGCAGTCTTTTTTTCTCCAGTTCATTCAGACAACTATCATAATTTTTTATGTACTGTGACTCCTCTATATGAGATTGATTCTTGAGGTCTCACAACAACCATTTTTACTGTATTTAGTGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAGGTAATTTTTTTTCAAAAGCAGAATCTACTTTGTATGTAAAGTAAACTGACAAATATGTACTTGGAAATAGGAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATG</genome_strand>
        <mrna_strand>CTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGGTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGG................................................................................................................................................................................................................TGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGACAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGACGTGGTTCTTCCGGAGTTGGGTTGACAGCTGCAGTTACTTCTGATCAAGAAACAT......................................................................GAGAAAGAAAGCTAGAAACTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAATTTGATAAAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451695" ref_strand="+" ref_description="SGN-E451695 [cSTS-13-P12]">
      <seq>tcttgttgcttcatgcaagcctggagaccgtgtagcagttgttggggtatacaaagctcttcctagtaaaagccaaggaagcatgaaatggtgtattcagaacaaatcctcataggtaacaatgtgtctctcctgaacaagtcagcaaatgcaccaaactacacagaaaaagtccttaaagacatcaagaatatttctgttaaagatgatacttttgatcttcttgctaattcactggcaccatctatttatgggcatttgtggataaagaaagcagttgttctgctcatgcttggtggaattgaaaagaacttgaaaaatggaactcacttaagaggtgatataaacatgatgatggttggtgatccatctgttgccaagtctcagctgctgagagcaataatgaatattgctccattagcaatatcaactactgggtcgtggttcttccggagttggtttgacagctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="53212" stop="51841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52912" g_stop="52814" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52813" i_stop="52720" i_length="94">
            <donor d_prob="0.929" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52719" g_stop="52483" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="338" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52482" i_stop="52275" i_length="208">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52274" g_stop="52141" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="473" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E451695" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52912" e_stop="52814"/>
          <exon e_start="52719" e_stop="52483"/>
          <exon e_start="52274" e_stop="52141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATG-AATGGTGTATTCAGGTGTGTGTTTAAAGTAACATACTGCTTTAACTCCCTCAGAATAGTTAAATTTTTTTTTGTGTGTGTAATCCTGTCCATCGATTTTGTTGTGCAGAAC-AATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTGAAAGACATCAAGAATATTTCTGTTAAAGATGATGCTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGGGTAAGATAAACTATTTTACCTTCGGTAAGGCTACATTTTGCTGTCCTTGGCACTTAGCACCAATGCAGACATTACTGCTTGACCATGTGAACGCAGTCTTTTTTTCTCCAGTTCATTCAGACAACTATCATAATTTTTTATGTACTGTGACTCCTCTATATGAGATTGATTCTTGAGGTCTCACAACAACCATTTTTACTGTATTTAGTGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACT-GGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAG</genome_strand>
        <mrna_strand>TCTTGTTGCTTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAAATGGTGTATTCAG..............................................................................................AACAAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAAAAAGTCCTTAAAGACATCAAGAATATTTCTGTTAAAGATGATACTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGAACTCACTTAAGAGG................................................................................................................................................................................................................TGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATAATGAATATTGCTCCATTAGCAATATCAACTACTGGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449746" ref_strand="+" ref_description="SGN-E449746 [cSTS-7-K12]">
      <seq>gtcccgtttcattggttccatggtctgtgttgaaggcattgttaccaagtgttctcttgtgaggccaaaggttgtaaagagtgtccacttttgtccgacaactgagaaatttacggcccgtgaatacagagatatcacatcgaatgttggtctgccaactggttctgtgtacccgacacgggatgataatggcaatttgctagttactgagtatggtttatgcacatataaagatcatcaaactttatcaatgcaagaggtgcctgaaaattctgctcctggtcaacttcctagaacagtggatatagtcgtagaggatgatcttgttgattcatgcaagcctggagaccgtgtagcagttgttggggtatacaaagctcttcctagtaaaagccaaggaagcatgaatggtgtattcagaacaatcctcataggtaacaatgtgtctctcctgaacaagtcagcaaatgcaccaaactacacagagaaagtccttaaagacatcaagaatatttctgttaaagatgatacttttgatcttcttgctaattcactggcaccatctatttatgggcatttgtggataaagaaagcagttgttctgctcatgcttggtggaattgaaaagaacttgaaaaatggactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="55329" stop="52190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55029" g_stop="54980" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53269" g_stop="53139" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="181" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53138" i_stop="53053" i_length="86">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53052" g_stop="52814" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="420" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52813" i_stop="52720" i_length="94">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52719" g_stop="52490" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="649" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E449746" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55029" e_stop="54980"/>
          <exon e_start="53269" e_stop="53139"/>
          <exon e_start="53052" e_stop="52814"/>
          <exon e_start="52719" e_stop="52490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGTGTACGTCTTTTGAATTTGCTTATAGCGCTCATTTTTAGCTCATATCTACTTTGACTGTGGTATTATGCCAGTGTATTATATAAATCTTAAATTAATCATATTTACTCCATTACCGATAATTTAGCCAACAAAGTAAGGCCACTAAATTTATTTTAATTGATGTGTCTTAGATTCACTCCAAAGTTAACGAGTCAGTAGGAAGGCCTAATACATTTCTGAGTCATTTTTGTACTGTGAGTATAGCTCATTTGGAGTCTATGGTGAAAATTTTGATGAATATTTTGTTTTATTAAAAATGCTTTTATAATGGTAAAAGCAATGAAAATGGGGAACTATTTATCTGGTGGGTAGTTGTTTATTGCTTTTAAAATGGTAAACCCAATAAAAATGGGGAACTATTTACTTGGTGGATAGTTGTTTTACACGTGCCGCAAAGGTTTGGGTGATATGATACAACTGATATGTGTTTGACAGCTGTATGTTAGCAGCAATTTTTCATTAGAAATGACCTCTGAAATATATTCATGTCCATTTCACAGGGGAAGACGTGTATATGTCCAGTGAACAAAGTTATGGTGATATAGTAGTTTCTTGTTTGTAGTGGGCCATGTCTATATCAGTACCAGTTGCTAGTAAAGGGATGATGAAAACTGGACTTTCTAGGACTGTAGTACTAGTATTATATGGTTCAACTGATTAACTAAGAAGAATTATTGATTTCTAAATTGGACATGAGATTACCAATTATATCCATTTTTATTGGTGATTATTATGTTCCTTGAATGCATCACGTAAGCATTTGAGATGTTTGGTAGTTTCAATAACCAGTGTGCAGTTTGCTGGTGTGGAATTGGGAAAAGATTGCATGTCATGGATACTAAGCTGTTAGCACAAGTTTAGCTTAAGTACTGTTAGCACAAGTGTAGCATAAAGTACTGGACTTGTGCTTATTAGAATTGGTTCCATAGTGGTGCAATTGTGCAACTGGAGAGTGACCCTTGTTACTTCTGCACTGTATAGTTGTGCCTTTTCTTCTAAATGCACTGTATGATCAATAATTTGCAAGCTTCCTTCTTCCTGATATGCATTTACTCGTGCCATTGCCAAGTATAGCACAAGAATTGGAACTTCATCCAGTTGTGCATATTTGTTTTCCAAAACTAAACCAATTTTATCCTTTAGCTTCCTACATCACCAAATAATATGATTAACCATAGTTGGGCGTATTTAAATTCAAAAGCATATCAAAGGGCAATAAATACAGAGAGTTGATAGAAGCAATAAGATGATAAAATATGCCAAACATCATTAGTTTGACTATGCTGTCTTCTGTTGTTTTGTTTCATTATTAAAATCCATTTTCTACTTGATTTTTCCTGCTCATGTTTGCAATCTGAAGTATTTGATAATATAAAACACATATTCTTTGTTATTTCTTGTTGTTTATAACTGAAATATGTGTCTAAATTTCATTCTCTAGTCAAAGAGAAACATGAGATAAGTTGATGCTAGGGCAGATTTCATCTGTCATCAGCTGAAGTTTTTGAGTCATGAATCATCTTCTTGTTTTATATTTAGTCCTTAGCTTGCTGCAACTTTGAGTTATAAATCATTTTCTTGTTTTATATTGAGCCCTAGCTTGGATGCCACTTAGTAATTGACTCTTTTAATAAAATTTATTAATGAAAGTTGCTACTTCAATATCTATAGGTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGGGTAATGATGAACTGATATAGGTTTCAGTTTTGGCCTTCTCTATTTGTTTAGCTAAACAGAATTTCACAAGAGTGATTATGTTGCAGGATGATAATGGCAATTTGCTAGTTACTGAGTACGGTTTATGCACATACAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTGGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAATGGTGTATTCAGGTGTGTGTTTAAAGTAACATACTGCTTTAACTCCCTCAGAATAGTTAAATTTTTTTTTGTGTGTGTAATCCTGTCCATCGATTTTGTTGTGCAGAACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTGAAAGACATCAAGAATATTTCTGTTAAAGATGATGCTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACT</genome_strand>
        <mrna_strand>GTCCCGTTTCATTGGTTCCATGGTCTGTGTTGAAGGCATTGTTACCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGTGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGG......................................................................................GATGATAATGGCAATTTGCTAGTTACTGAGTATGGTTTATGCACATATAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTGGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAATGGTGTATTCAG..............................................................................................AACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTTAAAGACATCAAGAATATTTCTGTTAAAGATGATACTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAAT-GGACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560252" ref_strand="+" ref_description="SGN-E560252 [19876]">
      <seq>tttaactgatatgatccggnaccataatcncaagtatcttaaagaaggcgagcaagtctggttgggtttactggtccttttgtttcgaggagagtaaccccaagagagctgttgtcccgtttcattggttccatggtctgtgttgaaggcattgttaccaagtgttctcttgtgaggccaaaggttgttaagagtgtccacttttgtccgacaactgagaaatttacggcccgtgaatacagagatatcacatcgaatgttggtctgccaactggttctgtgtacccgacacgggatgataatggcaatttgctagttactgagtatggtttatgcacatataaagatcatcaaactttatcaatgcaagaggtgcctgaaaattctgctcctggtcaacttcctagaacagtagatatagtcgtagaggatgatcttgttgattcatgcaagcctggagaccgtgtagcagttgttggggtatacaaagctcttcctagtaaaagccaaggaagcatggatggtgtattcagaacaatcctcataggtaacaatgtgtctctcctgaacaagtcagcaaatgcaccaaactacacagagaaagtccttaaagacatcaagaatatttctgttaaagatgatacttttgatcttcttgctaattcactggcaccatctattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="55443" stop="52268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55143" g_stop="54980" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53269" g_stop="53139" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="294" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53138" i_stop="53053" i_length="86">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53052" g_stop="52814" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="533" r_length="239" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52813" i_stop="52720" i_length="94">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52719" g_stop="52568" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="684" r_length="151" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E560252" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55143" e_stop="54980"/>
          <exon e_start="53269" e_stop="53139"/>
          <exon e_start="53052" e_stop="52814"/>
          <exon e_start="52719" e_stop="52568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGTGTACGTCTTTTGAATTTGCTTATAGCGCTCATTTTTAGCTCATATCTACTTTGACTGTGGTATTATGCCAGTGTATTATATAAATCTTAAATTAATCATATTTACTCCATTACCGATAATTTAGCCAACAAAGTAAGGCCACTAAATTTATTTTAATTGATGTGTCTTAGATTCACTCCAAAGTTAACGAGTCAGTAGGAAGGCCTAATACATTTCTGAGTCATTTTTGTACTGTGAGTATAGCTCATTTGGAGTCTATGGTGAAAATTTTGATGAATATTTTGTTTTATTAAAAATGCTTTTATAATGGTAAAAGCAATGAAAATGGGGAACTATTTATCTGGTGGGTAGTTGTTTATTGCTTTTAAAATGGTAAACCCAATAAAAATGGGGAACTATTTACTTGGTGGATAGTTGTTTTACACGTGCCGCAAAGGTTTGGGTGATATGATACAACTGATATGTGTTTGACAGCTGTATGTTAGCAGCAATTTTTCATTAGAAATGACCTCTGAAATATATTCATGTCCATTTCACAGGGGAAGACGTGTATATGTCCAGTGAACAAAGTTATGGTGATATAGTAGTTTCTTGTTTGTAGTGGGCCATGTCTATATCAGTACCAGTTGCTAGTAAAGGGATGATGAAAACTGGACTTTCTAGGACTGTAGTACTAGTATTATATGGTTCAACTGATTAACTAAGAAGAATTATTGATTTCTAAATTGGACATGAGATTACCAATTATATCCATTTTTATTGGTGATTATTATGTTCCTTGAATGCATCACGTAAGCATTTGAGATGTTTGGTAGTTTCAATAACCAGTGTGCAGTTTGCTGGTGTGGAATTGGGAAAAGATTGCATGTCATGGATACTAAGCTGTTAGCACAAGTTTAGCTTAAGTACTGTTAGCACAAGTGTAGCATAAAGTACTGGACTTGTGCTTATTAGAATTGGTTCCATAGTGGTGCAATTGTGCAACTGGAGAGTGACCCTTGTTACTTCTGCACTGTATAGTTGTGCCTTTTCTTCTAAATGCACTGTATGATCAATAATTTGCAAGCTTCCTTCTTCCTGATATGCATTTACTCGTGCCATTGCCAAGTATAGCACAAGAATTGGAACTTCATCCAGTTGTGCATATTTGTTTTCCAAAACTAAACCAATTTTATCCTTTAGCTTCCTACATCACCAAATAATATGATTAACCATAGTTGGGCGTATTTAAATTCAAAAGCATATCAAAGGGCAATAAATACAGAGAGTTGATAGAAGCAATAAGATGATAAAATATGCCAAACATCATTAGTTTGACTATGCTGTCTTCTGTTGTTTTGTTTCATTATTAAAATCCATTTTCTACTTGATTTTTCCTGCTCATGTTTGCAATCTGAAGTATTTGATAATATAAAACACATATTCTTTGTTATTTCTTGTTGTTTATAACTGAAATATGTGTCTAAATTTCATTCTCTAGTCAAAGAGAAACATGAGATAAGTTGATGCTAGGGCAGATTTCATCTGTCATCAGCTGAAGTTTTTGAGTCATGAATCATCTTCTTGTTTTATATTTAGTCCTTAGCTTGCTGCAACTTTGAGTTATAAATCATTTTCTTGTTTTATATTGAGCCCTAGCTTGGATGCCACTTAGTAATTGACTCTTTTAATAAAATTTATTAATGAAAGTTGCTACTTCAATATCTATAGGTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGGGTAATGATGAACTGATATAGGTTTCAGTTTTGGCCTTCTCTATTTGTTTAGCTAAACAGAATTTCACAAGAGTGATTATGTTGCAGGATGATAATGGCAATTTGCTAGTTACTGAGTACGGTTTATGCACATACAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTGGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAATGGTGTATTCAGGTGTGTGTTTAAAGTAACATACTGCTTTAACTCCCTCAGAATAGTTAAATTTTTTTTTGTGTGTGTAATCCTGTCCATCGATTTTGTTGTGCAGAACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTGAAAGACATCAAGAATATTTCTGTTAAAGATGATGCTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATG</genome_strand>
        <mrna_strand>TTTAACTGATATGATCCGGNACCATAATCNCAAGTATCTTAAAGAAGGCGAGCAAGTC-TGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTCTGTGTTGAAGGCATTGTTACCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTTGTGAGGCCAAAGGTTGTTAAGAGTGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGG......................................................................................GATGATAATGGCAATTTGCTAGTTACTGAGTATGGTTTATGCACATATAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTAGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGGATGGTGTATTCAG..............................................................................................AACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTTAAAGACATCAAGAATATTTCTGTTAAAGATGATACTTTTGATCTTCTTGCTAATTCACTGGCACCATCTA-TTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347137" ref_strand="+" ref_description="SGN-E347137 [cTOF-25-I11]">
      <seq>tctcctccatttctctctctctcacacagattaacacttactcagtcagccatggatctaagcgacgaggttagggctacgcataagcgaactttcctcaagttcttcgaacaaactgaactggacacggagctgaagaaggaatttgaatctatgattaacaacaataggcgtcgtgtcattatggaccttgctgatttctacaatgacagagaaggctctgatttggctcgcaggcttcttcagaatcctagtgagtatatgcaaccgttggttgatgctttaaccgatatgatccggacccataatcccaagtaccttaaagaaggcgagcaagtcttggttgggtttactggtccttttgtttcgaggagagtaaccccaagagagctgttgtcccgtttcattggttccatggtttgcgttgaaggcattgttaccaagtgttctcttgtgaggccaaaggttgtaaagagcgtccacttttgtccgacaactgagaaatttacgggtcgtgaatacagagatatcacatcgaatgttggtctgccaactgggtctgtgtacccgacacgggatgataatggcaattngctagttactgagtacggtttatgcacataccaagatcatcaaactttatcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="56132" stop="52679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55842" g_stop="55722" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55721" i_stop="55588" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55587" g_stop="55469" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="236" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55468" i_stop="55189" i_length="280">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55188" g_stop="54980" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="445" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53269" g_stop="53139" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="576" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53138" i_stop="53053" i_length="86">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53052" g_stop="52979" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="650" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E347137" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55842" e_stop="55722"/>
          <exon e_start="55587" e_stop="55469"/>
          <exon e_start="55188" e_stop="54980"/>
          <exon e_start="53269" e_stop="53139"/>
          <exon e_start="53052" e_stop="52979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCCATTTCTCTCTCTCTCTCACACAGAGATTAACACTTACTCAGTCAGCCATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTCGAACAAACTGTAAGTATTTTCTCCTTTTTTTTCTTTCTTCGCATGTTTTATACTTGATTAATTTGGTTAATTTTATGGAGTCTGAGTTGTATTTATTTATTCGTTTGTTTTTGCTTTTTTTGATTCACTTTTTACTTTTGTAGGAACTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATCAACAACAATAGGCGTCGTGTCATTATGGACCTCGCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAGGTTTTAATCTTTTTCATTAATTTTAGTGACGTCATTTTTGGCTTGTATAATTCGAGGAGAAAATCAAGAGTGGTTTTGGGTTTGTGTTTTTGAAATTGAAGTACTACCCTAGGCTTGTTGGTGTTGTTTTTCTAGTTTATTTGCTTTCAGGTGCAAATTTGATGGGGGAAAATGTTGAAAAAGACAAGTTTTTTGATATTTTCCAAGTATTGAAGTTTACCTGGGATTATTGATATTGTTGGTCCGGCTTATAAATTTCTTCTTTTCTTGAATTGTGTAGGCTTCTTCAGAATCCTAGTGAGTATATGCAACCGTTGATTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGTGTACGTCTTTTGAATTTGCTTATAGCGCTCATTTTTAGCTCATATCTACTTTGACTGTGGTATTATGCCAGTGTATTATATAAATCTTAAATTAATCATATTTACTCCATTACCGATAATTTAGCCAACAAAGTAAGGCCACTAAATTTATTTTAATTGATGTGTCTTAGATTCACTCCAAAGTTAACGAGTCAGTAGGAAGGCCTAATACATTTCTGAGTCATTTTTGTACTGTGAGTATAGCTCATTTGGAGTCTATGGTGAAAATTTTGATGAATATTTTGTTTTATTAAAAATGCTTTTATAATGGTAAAAGCAATGAAAATGGGGAACTATTTATCTGGTGGGTAGTTGTTTATTGCTTTTAAAATGGTAAACCCAATAAAAATGGGGAACTATTTACTTGGTGGATAGTTGTTTTACACGTGCCGCAAAGGTTTGGGTGATATGATACAACTGATATGTGTTTGACAGCTGTATGTTAGCAGCAATTTTTCATTAGAAATGACCTCTGAAATATATTCATGTCCATTTCACAGGGGAAGACGTGTATATGTCCAGTGAACAAAGTTATGGTGATATAGTAGTTTCTTGTTTGTAGTGGGCCATGTCTATATCAGTACCAGTTGCTAGTAAAGGGATGATGAAAACTGGACTTTCTAGGACTGTAGTACTAGTATTATATGGTTCAACTGATTAACTAAGAAGAATTATTGATTTCTAAATTGGACATGAGATTACCAATTATATCCATTTTTATTGGTGATTATTATGTTCCTTGAATGCATCACGTAAGCATTTGAGATGTTTGGTAGTTTCAATAACCAGTGTGCAGTTTGCTGGTGTGGAATTGGGAAAAGATTGCATGTCATGGATACTAAGCTGTTAGCACAAGTTTAGCTTAAGTACTGTTAGCACAAGTGTAGCATAAAGTACTGGACTTGTGCTTATTAGAATTGGTTCCATAGTGGTGCAATTGTGCAACTGGAGAGTGACCCTTGTTACTTCTGCACTGTATAGTTGTGCCTTTTCTTCTAAATGCACTGTATGATCAATAATTTGCAAGCTTCCTTCTTCCTGATATGCATTTACTCGTGCCATTGCCAAGTATAGCACAAGAATTGGAACTTCATCCAGTTGTGCATATTTGTTTTCCAAAACTAAACCAATTTTATCCTTTAGCTTCCTACATCACCAAATAATATGATTAACCATAGTTGGGCGTATTTAAATTCAAAAGCATATCAAAGGGCAATAAATACAGAGAGTTGATAGAAGCAATAAGATGATAAAATATGCCAAACATCATTAGTTTGACTATGCTGTCTTCTGTTGTTTTGTTTCATTATTAAAATCCATTTTCTACTTGATTTTTCCTGCTCATGTTTGCAATCTGAAGTATTTGATAATATAAAACACATATTCTTTGTTATTTCTTGTTGTTTATAACTGAAATATGTGTCTAAATTTCATTCTCTAGTCAAAGAGAAACATGAGATAAGTTGATGCTAGGGCAGATTTCATCTGTCATCAGCTGAAGTTTTTGAGTCATGAATCATCTTCTTGTTTTATATTTAGTCCTTAGCTTGCTGCAACTTTGAGTTATAAATCATTTTCTTGTTTTATATTGAGCCCTAGCTTGGATGCCACTTAGTAATTGACTCTTTTAATAAAATTTATTAATGAAAGTTGCTACTTCAATATCTATAGGTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGGGTAATGATGAACTGATATAGGTTTCAGTTTTGGCCTTCTCTATTTGTTTAGCTAAACAGAATTTCACAAGAGTGATTATGTTGCAGGATGATAATGGCAATTTGCTAGTTACTGAGTACGGTTTATGCACATACAAAGATCATCAAACTTTATCAATGCA</genome_strand>
        <mrna_strand>TCTCCTCCA-TT-TCTCTCTCTCTCACAC--AGATTAACACTTACTCAGTCAGCCATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTCGAACAAACT......................................................................................................................................GAACTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATTAACAACAATAGGCGTCGTGTCATTATGGACCTTGCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAG........................................................................................................................................................................................................................................................................................GCTTCTTCAGAATCCTAGTGAGTATATGCAACCGTTGGTTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGGTCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGGTCTGTGTACCCGACACGG......................................................................................GATGATAATGGCAATTNGCTAGTTACTGAGTACGGTTTATGCACATACCAAGATCATCAAACTTTATCAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441900" ref_strand="+" ref_description="SGN-E441900 [cSTA-31-D19]">
      <seq>gctctgctctactctcctctctctctcacacacacagagattcaccctttctcagtcagcaatggatctaagcgacgaggttagggctacgcataagcgaactttcctcaagttctttgaacaaactgaattggacacggagctgaagaaggaatttgaatctatgatcaacaacaataggcgtcgtgtcattatggacctctctgatttctacaatgacagagaaggctctgatttggctcgcaggcttcttcagaatccaagtgagtatatgcaaccgttggttgatgctttaaccgatatgatccggacccataatcccaagtaccttaaagaaggcgagcaagtcttggttgggtttactggtccttttgtttcgaggagagtaaccccaagagagctgttgtcccgtttcattggttccatggtctgtgttgaaggcattgttaccaagtgttctcttgtgaggccaaaggttgtaaagagcgtccacttttgtccgacaactgagaaatttacggcccgtgaatacagagatatcacatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="56131" stop="52874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55848" g_stop="55722" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55721" i_stop="55588" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55587" g_stop="55469" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="246" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55468" i_stop="55189" i_length="280">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55188" g_stop="54980" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="455" r_length="209" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710">
            <donor d_prob="0.917" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53269" g_stop="53174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="551" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E441900" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55848" e_stop="55722"/>
          <exon e_start="55587" e_stop="55469"/>
          <exon e_start="55188" e_stop="54980"/>
          <exon e_start="53269" e_stop="53174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACT-CTCTCCTCCATTTCTCTCTCTCTCTCACACAGAGATTAACACTTACTCAGTCAGCCATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTCGAACAAACTGTAAGTATTTTCTCCTTTTTTTTCTTTCTTCGCATGTTTTATACTTGATTAATTTGGTTAATTTTATGGAGTCTGAGTTGTATTTATTTATTCGTTTGTTTTTGCTTTTTTTGATTCACTTTTTACTTTTGTAGGAACTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATCAACAACAATAGGCGTCGTGTCATTATGGACCTCGCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAGGTTTTAATCTTTTTCATTAATTTTAGTGACGTCATTTTTGGCTTGTATAATTCGAGGAGAAAATCAAGAGTGGTTTTGGGTTTGTGTTTTTGAAATTGAAGTACTACCCTAGGCTTGTTGGTGTTGTTTTTCTAGTTTATTTGCTTTCAGGTGCAAATTTGATGGGGGAAAATGTTGAAAAAGACAAGTTTTTTGATATTTTCCAAGTATTGAAGTTTACCTGGGATTATTGATATTGTTGGTCCGGCTTATAAATTTCTTCTTTTCTTGAATTGTGTAGGCTTCTTCAGAATCCTAGTGAGTATATGCAACCGTTGATTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGTGTACGTCTTTTGAATTTGCTTATAGCGCTCATTTTTAGCTCATATCTACTTTGACTGTGGTATTATGCCAGTGTATTATATAAATCTTAAATTAATCATATTTACTCCATTACCGATAATTTAGCCAACAAAGTAAGGCCACTAAATTTATTTTAATTGATGTGTCTTAGATTCACTCCAAAGTTAACGAGTCAGTAGGAAGGCCTAATACATTTCTGAGTCATTTTTGTACTGTGAGTATAGCTCATTTGGAGTCTATGGTGAAAATTTTGATGAATATTTTGTTTTATTAAAAATGCTTTTATAATGGTAAAAGCAATGAAAATGGGGAACTATTTATCTGGTGGGTAGTTGTTTATTGCTTTTAAAATGGTAAACCCAATAAAAATGGGGAACTATTTACTTGGTGGATAGTTGTTTTACACGTGCCGCAAAGGTTTGGGTGATATGATACAACTGATATGTGTTTGACAGCTGTATGTTAGCAGCAATTTTTCATTAGAAATGACCTCTGAAATATATTCATGTCCATTTCACAGGGGAAGACGTGTATATGTCCAGTGAACAAAGTTATGGTGATATAGTAGTTTCTTGTTTGTAGTGGGCCATGTCTATATCAGTACCAGTTGCTAGTAAAGGGATGATGAAAACTGGACTTTCTAGGACTGTAGTACTAGTATTATATGGTTCAACTGATTAACTAAGAAGAATTATTGATTTCTAAATTGGACATGAGATTACCAATTATATCCATTTTTATTGGTGATTATTATGTTCCTTGAATGCATCACGTAAGCATTTGAGATGTTTGGTAGTTTCAATAACCAGTGTGCAGTTTGCTGGTGTGGAATTGGGAAAAGATTGCATGTCATGGATACTAAGCTGTTAGCACAAGTTTAGCTTAAGTACTGTTAGCACAAGTGTAGCATAAAGTACTGGACTTGTGCTTATTAGAATTGGTTCCATAGTGGTGCAATTGTGCAACTGGAGAGTGACCCTTGTTACTTCTGCACTGTATAGTTGTGCCTTTTCTTCTAAATGCACTGTATGATCAATAATTTGCAAGCTTCCTTCTTCCTGATATGCATTTACTCGTGCCATTGCCAAGTATAGCACAAGAATTGGAACTTCATCCAGTTGTGCATATTTGTTTTCCAAAACTAAACCAATTTTATCCTTTAGCTTCCTACATCACCAAATAATATGATTAACCATAGTTGGGCGTATTTAAATTCAAAAGCATATCAAAGGGCAATAAATACAGAGAGTTGATAGAAGCAATAAGATGATAAAATATGCCAAACATCATTAGTTTGACTATGCTGTCTTCTGTTGTTTTGTTTCATTATTAAAATCCATTTTCTACTTGATTTTTCCTGCTCATGTTTGCAATCTGAAGTATTTGATAATATAAAACACATATTCTTTGTTATTTCTTGTTGTTTATAACTGAAATATGTGTCTAAATTTCATTCTCTAGTCAAAGAGAAACATGAGATAAGTTGATGCTAGGGCAGATTTCATCTGTCATCAGCTGAAGTTTTTGAGTCATGAATCATCTTCTTGTTTTATATTTAGTCCTTAGCTTGCTGCAACTTTGAGTTATAAATCATTTTCTTGTTTTATATTGAGCCCTAGCTTGGATGCCACTTAGTAATTGACTCTTTTAATAAAATTTATTAATGAAAGTTGCTACTTCAATATCTATAGGTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATG</genome_strand>
        <mrna_strand>GCTCTGCTCTACTC-TCCTCTCTCTCTCACACACACAGAGATTCACCCTTTCTCAGTCAGCAATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTTGAACAAACT......................................................................................................................................GAATTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATCAACAACAATAGGCGTCGTGTCATTATGGACCTCTCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAG........................................................................................................................................................................................................................................................................................GCTTCTTCAGAATCCAAGTGAGTATATGCAACCGTTGGTTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTCTGTGTTGAAGGCATTGTTACCAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696132" ref_strand="+" ref_description="SGN-E696132 [LH_Ea08F10](-)">
      <seq>gtgatgcttatcacatgactgatccccgagctgatggtcttggagtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacctctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccacgacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttaaacaacaatgccatcagttttgaattatgcaagagatttgaaagatgatatgatcttttgagattaacgactctctgatggcacctgttttcgaaaaaaatatttagttaacctgtaagctgtataaacagccatatgcacaactatagtcgtcgctactaaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60853" stop="57837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60553" g_stop="60456" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="212" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="314" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="381" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58296" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="758" r_length="377" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58295" i_stop="58222" i_length="74">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58221" g_stop="58139" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="839" r_length="81" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E696132" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60553" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58296"/>
          <exon e_start="58221" e_stop="58139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACAACTCTCTGATGGCACCTGTTTAATTTTCCATTTGAGTCGACAATTGGTTCGAGAACATTTGTTGAACAACATATGCGTGGGTAGAAAAACTGTTTTCGAAAAAAAAATATCTAGTTAACCTGTAAGCTGTATAAACAGCCATATTCACAACTATACTCGTCGCTACTAAATTAA</genome_strand>
        <mrna_strand>GTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGAGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACCTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACGACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACGACTCTCTGATGGCACCT..........................................................................GTTTTCG--AAAAAAATATTTAGTTAACCTGTAAGCTGTATAAACAGCCATATGCACAACTATAGTCGTCGCTACTAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401415" ref_strand="+" ref_description="SGN-E401415 [PPC-4-I17]">
      <seq>ccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctgtcgtcgccttttctgcattcaagccttaattcagctcagtttagctagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttctttcatctccgtgtgggcgacttgctaggggcagtgagagaggaacaattgtcaattcttttatgtactaataatctttagcttgtagtttcatagcaatgaacattttaactttttcactccttaaattagcttggaccttcatagcttggttaaacaacaacgccatcagttttgaattatgcatgagatttgaaagatgatatgatcttttgatattaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59263" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58963" g_stop="58932" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="99" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58304" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="472" r_length="373" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E401415" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58963" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACA-T---TGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCAC-TTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACAACTCTCTGA</genome_strand>
        <mrna_strand>CCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTCGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGCTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCTTTCATCTCCGTGTGGGCGACTTGCTAGGGGCAGTGAGAGAGGAACAATTGTCAATTC-TTTTATGTACTAATAATCTTTAGCTTGTAGTTTCATAGCAATGAACATTTTAACTTTTTCACTCCTTAAATTAGCTTGGACCTTCATAGCTTGGTTAAACAACAACGCCATCAGTTTTGAATTATGCATGAGATTTGAAAGATGATATGATCTTTTGATATTAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690822" ref_strand="+" ref_description="SGN-E690822 [LH_Ea04I04]">
      <seq>tcctcgtgccgaattcggcacgaggcatgcaatgaaaccaggagcgccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgactgatccccgagctgatggtcttggagtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacctctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccacgacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttaaacaaccatgccatcagttttgaattatgcaagagatttgaaagatgatatgatcttttgagattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60914" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60611" g_stop="60456" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="181" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="295" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="397" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="464" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58306" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="831" r_length="367" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E690822" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60611" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACAACTCTCT</genome_strand>
        <mrna_strand>CATGCAATGAAACCAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGAGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACCTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACGACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACCATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694662" ref_strand="+" ref_description="SGN-E694662 [LH_Ea04I04](-)">
      <seq>gcatgcaatgaaacgaggaggggccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgactgatccccgagctgatggtcttggagtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacctctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccacgacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttaaacaacaatgccatcagttttgaattatgcaagggatttgaaagatgatatgatctttgagattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60912" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60612" g_stop="60456" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="272" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="374" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="441" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58315" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="798" r_length="357" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="810"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E694662" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60612" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCAATGAAACGAGGA-GCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAA</genome_strand>
        <mrna_strand>GCATGCAATGAAACGAGGAGGGGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGAGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACCTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACGACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGGGATTTGAAAGATGATATGATC-TTTGAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448399" ref_strand="+" ref_description="SGN-E448399 [cSTS-2-J4]">
      <seq>agaccacctcaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctatcgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttagctagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttctttcatctccgtgtgggcgacttgttgggcgcagcgagagaggaacaattgtcaattcttttatgtactaataatctttagcttgtagtttcatagcaatgaacattttaactttttcacgccttaaattagcttggaccttcatagtttggttaaacaacaatgccatcagttntgaattatgcaagagatttgaaagatgatatgatcttttgatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59458" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59158" g_stop="59124" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="137" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="204" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58672" g_stop="58315" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="566" r_length="362" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="576"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E448399" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59158" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTG--T-T-TCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCAC-TTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAA</genome_strand>
        <mrna_strand>AGACCACCTCAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATCGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGCTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCTTTCATCTCCGTGTGGGCGACTTGTTGGGCGCAGCGAGAGAGGAACAATTGTCAATTC-TTTTATGTACTAATAATCTTTAGCTTGTAGTTTCATAGCAATGAACATTTTAACTTTTTCACGCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTNTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432283" ref_strand="-" ref_description="SGN-E432283 [STM-56-F22]">
      <seq>cagttaattgtgatgcttatcacatgactgatccccgagctgatggtcttggtgtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttccaccattgttggtgatctagccgaaataaatgctgtcaagaaggttttcaagaccacctcaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctatcgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctgtcgtcgccttttctgcattcaagccttaattcagctcagtttagctagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttctttcatctccgtgtgggcgacttgctaggggcagtgagagaggaacaattgtcaattcttttatgtactaataatctttagcttgtagtttcatagcaatgaacattttaactttttcactccttaaattagcttggaccttcatagcttggttaaacaacaacgccatcagttttgaattatgcatgagatttgaaagatgataggatattttgatattccaaaacaatttaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60862" stop="58017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60562" g_stop="60456" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="221" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="323" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="390" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58320" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="747" r_length="357" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E432283" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432283" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60562" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACA-T---TGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCAC-TTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAG</genome_strand>
        <mrna_strand>CAGTTAATTGTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCCACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTCAAGAAGGTTTTCAAGACCACCTCAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATCGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTCGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGCTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCTTTCATCTCCGTGTGGGCGACTTGCTAGGGGCAGTGAGAGAGGAACAATTGTCAATTC-TTTTATGTACTAATAATCTTTAGCTTGTAGTTTCATAGCAATGAACATTTTAACTTTTTCACTCCTTAAATTAGCTTGGACCTTCATAGCTTGGTTAAACAACAACGCCATCAGTTTTGAATTATGCATGAGATTTGAAAGATGATAGGATATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405063" ref_strand="+" ref_description="SGN-E405063 [PPC-16-I22]">
      <seq>ttacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctgtcgtcgccttttctgcattcaagccttaattcagctcagtttagctagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttctttcatctccgtgtgggcgacttgctaggggcagtgagagaggaacaattgtcaattcttttatgtactaataatctttagcttgtagtttcatagcaatgaacattttaactttttcactccttaaattagcttggaccttcatagcttggttaaacaacaacgccatcagttttgaattatgcatgagatttgaaagatgatatgatcttttgatatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59269" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58969" g_stop="58932" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="105" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58320" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="462" r_length="357" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="480"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E405063" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58969" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACA-T---TGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCAC-TTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAG</genome_strand>
        <mrna_strand>TTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTCGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGCTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCTTTCATCTCCGTGTGGGCGACTTGCTAGGGGCAGTGAGAGAGGAACAATTGTCAATTC-TTTTATGTACTAATAATCTTTAGCTTGTAGTTTCATAGCAATGAACATTTTAACTTTTTCACTCCTTAAATTAGCTTGGACCTTCATAGCTTGGTTAAACAACAACGCCATCAGTTTTGAATTATGCATGAGATTTGAAAGATGATATGATCTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243990" ref_strand="+" ref_description="SGN-E243990 [cLEE-1-K11](-)">
      <seq>ggggcatccttcaattaaccaattcaatccggagccttcagtggaatttgaaattgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttgggggccacaaatcggtggtggcctttttggcattcaagccttaattcagctcagtttaggtagagcaatcttttggagtagtacaggggattaatgtgaaacccattgtttgtttcatccccgtgtgggaaacttgctgggcgcagcgaaaaaggaacaattgtccattctttttagggacaaaaaatctttagctgggagttttaaagcaatgaacattttcccttttcattccttaaattagctgggcccttcatagtttggttaaacaacaatgccatcagttttgaattatgcaagagatttgaaaaatgatatgatcttttgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59257" stop="58012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58956" g_stop="58932" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="92" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.934" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58320" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="445" r_length="353" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="493"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E243990" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58956" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAG</genome_strand>
        <mrna_strand>GGGGCATCCTTCAATTAACCAATTC.....................................................................................AATCCGGAGCCTTCAGTGGAATTTGAAATTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGGGGCCACAAATCGGTGGTGGCCTTTTTGGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTTTGGAGTAGTACAGGGGATTAATGTGAAACCCATTGTTTGTTTCATCCCCGTGTGGGAAACTTGCTGGGCGCAGCGAAAAAGGAACAATTGTCCATTCTTTTTAGGGACAAAAAATCTTTAGCTGGGAGTTTTAAAGCAATGAACATTTTCCCTTTTCATTCCTTAAATTAGCTGGGCCCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAAATGATATGATCTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693549" ref_strand="+" ref_description="SGN-E693549 [LH_Ea01J19](-)">
      <seq>caatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttttggagtaatataggggattaatgtgatacccagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggcccttcatagtttggttaaacggacaatgccatcagtttgaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59146" stop="58055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58932" g_stop="58932" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="68" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58339" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="402" r_length="334" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E693549" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58932" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAAC-AACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAA</genome_strand>
        <mrna_strand>C.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTTTGGAGTAATATAGGGGATTAATGTGATACCCAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGCCCTTCATAGTTTGGTTAAACGGACAATGCCATCAG-TTTGAATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689969" ref_strand="+" ref_description="SGN-E689969 [LH_Ea02E15]">
      <seq>cggtgcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttaaacaacaatgccatcagttttgaattatgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59324" stop="58046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59026" g_stop="58932" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="162" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58341" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="494" r_length="332" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E689969" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59026" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGA</genome_strand>
        <mrna_strand>CGGTGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693809" ref_strand="+" ref_description="SGN-E693809 [LH_Ea02E15](-)">
      <seq>gggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttagacaacaatgccatcagtttgaattagcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59324" stop="58046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59024" g_stop="58932" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="160" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58356" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="476" r_length="316" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="498"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E693809" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59024" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATT</genome_strand>
        <mrna_strand>GGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAGACAACAATGCCATCAG-TTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689709" ref_strand="+" ref_description="SGN-E689709 [LH_Ea01J19]">
      <seq>cctttaatcctgagccttcagtggaatttgatactgttcccctttaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggtcacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtaatataggggattaatgtgatacacagtggctgtttcatctccgtgtgggcaacttgctgggcgcagcgagagaggaacaagtgtcaattctttttatgtactaataatctttagcttgtagttttatagcaatgaacattttcacttttcattccttaaattagcttggaccttcatagtttggttaaacaacaatgccatcagttttgaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59146" stop="58055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58936" g_stop="58932" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.400"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="72" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.934" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58672" g_stop="58356" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="389" r_length="317" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="407"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E689709" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58936" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATT</genome_strand>
        <mrna_strand>CCTTT.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCCCTTTAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAATATAGGGGATTAATGTGATACACAGTGGCTGTTTCATCTCCGTGTGGGCAACTTGCTGGGCGCAGCGAGAGAGGAACAAGTGTCAATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354076" ref_strand="+" ref_description="SGN-E354076 [cTOS-16-O8]">
      <seq>gttttcaagaccactacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggccacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtagtacaggggattaatgtgatacacattgtctgtttcatctccgtgtgggaaacttgctgggcgcagcgagagaagaaaattgtccattctttttatgtactaataatctttagcttgtagttttatagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="59465" stop="58131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59165" g_stop="59124" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="144" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="211" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58672" g_stop="58429" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="454" r_length="243" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E354076" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59165" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATT</genome_strand>
        <mrna_strand>GTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGATTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAAGAA-AATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E552647" ref_strand="+" ref_description="SGN-E552647 [cTSB-4-J17]">
      <seq>gtggatcccccgggctgcagcacatccgtagaggtgaagcggatttgatgcttgctggtggaactgaagctgccataatacctattggtttaggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttccaggccgtgggacaaagaaagagatggatttgttatgggagagggggctggaatcttggtgatggaaagtttggagcatgcaatgaaacgaggagcgccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgaccgatccccgagctgatggtcttggcgtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccactacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggccacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtagtacaggggattaatgtgatacacattgtctgtttcatctccgtgtgggaaacttgctgggcgcagcgagagaagaacaattgtccattctttttatgtactaataatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61368" stop="58157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61055" g_stop="60878" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="209" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="383" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="497" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="599" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="666" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58672" g_stop="58457" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="882" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E552647" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61055" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTT</genome_strand>
        <mrna_strand>AGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGCGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGATTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAAGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243989" ref_strand="+" ref_description="SGN-E243989 [cLEE-1-K11]">
      <seq>cttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccactacaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttggtggccacaactctgtcgttgccttttctgcattcaagccttaattcagctcagtttaggtagagcaatcttctggagtagtacaggggattaatgtgatacacattgtctgtttcatctccgtgtgggaaacttgctgggcgcagcgagagaggaacaattgtccattctttttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60794" stop="58170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60494" g_stop="60456" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="153" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="255" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="322" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58470" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="525" r_length="203" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E243989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60494" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGT</genome_strand>
        <mrna_strand>CTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGATTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399659" ref_strand="+" ref_description="SGN-E399659 [cSTC-2-A23]">
      <seq>gtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgataaattagaaaagattgataaggagcgagcaggtgttcttgtaggaacaggaatgggtggtcttacggttttctcagatggcgtccagaatttaattgaaaagggtcataggaaaattactccattttttataccatatgccataacaaacatgggttctgctttgcttggtattgatctaggttttatgggaccaaactactcaatctcaactgcttgtgctacctccaattactgtttttatgctgccgcaaatcatattcgcagaggtgaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctttcgtcgccttttctgcattcaagccttaattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62207" stop="58300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61907" g_stop="61834" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61048" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="336" r_length="262" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61047" i_stop="58973" i_length="2075">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58972" g_stop="58932" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="377" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="444" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58672" g_stop="58600" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="517" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E399659" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61907" e_stop="61834"/>
          <exon e_start="61309" e_stop="61048"/>
          <exon e_start="58972" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAG</genome_strand>
        <mrna_strand>GTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAAATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAGGAGCGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACGGTTTTCTCAGATGGCGTCCAGAATTTAATTGAAAAGGGTCATAGGAAAATTACTCCATTTTTTATACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTAGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCAAATCATATTCGCAGAGGTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTTTCGTCGCCTTTTCTGCATTCAAGCCTTAATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432282" ref_strand="+" ref_description="SGN-E432282 [STM-56-F22]">
      <seq>tagaggtgaagctgatttgatgcttgctggtggaactgaagctgccatgatacctattggtttaggaggttttgtggcatgcagagctttgtctcaaaggaatgatgatccacaaactgcttccagaccatgggacaaagatagagatggatttgttatgggagagggggctggaatcttggtgatggaaagtttggagcatgcaatgaaacgaggagcaccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgactgatccccgagctgatggtcttggtgtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttccaccattgttggtgatctagccgaaataaatgctgtcaagaaggttttcaagaccacctcaggaatcaaaatgaatgcaaccaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctatcgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggagtttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgcaatctccaattcctttggttttggtggtcacaactctgtcgtcgccttttctgcattcaagccttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61358" stop="58303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61058" g_stop="60878" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="355" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="469" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="571" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="638" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.934" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58672" g_stop="58603" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="708" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E432282" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61058" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATT</genome_strand>
        <mrna_strand>TAGAGGTGAAGCTGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATGATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGGAATGATGATCCACAAACTGCTTCCAGACCATGGGACAAAGATAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCCACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTCAAGAAGGTTTTCAAGACCACCTCAGGAATCAAAATGAATGCAACCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATCGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAGTTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CAATCTCCAATTCCTTTGGTTTTGGTGGTCACAACTCTGTCGTCGCCTTTTCTGCATTCAAGCCTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726464" ref_strand="+" ref_description="SGN-E726464 [LA11DE10]">
      <seq>gttttctcagatggtgtacaaaacctaattgaaaagggtcacaggaaaattactccattttttgtaccatatgccataacaaacatgggttctgctttgcttggtattgatcttggttttatgggaccaaactactcaatctcaactgcttgtgctacctccaattactgtttttatgctgccgctaatcacatccgtagaggtgaagcggatttgatgcttgctggtggaactgaagctgccataatacctattggtttaggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttccaggccgtgggacaaagaaagagatggatttgttatgggagagggggctggaatcttggtgatggaaagtttggagcatgcaatgaaacgaggagcgccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgaccgatccccgagctgatggtcttggtgtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttctaccattgttggtgatctagccgaaataaatgctgttaagaaggttttcaagaccactacaggaatcaaaatgaatgcaatcaagtctatgatagggcattgcctcggtgctgctggtggtctggaagctattgcaacaattaaagctattacaaccggctgggtgcatccttcaattaaccaattcaatcctgagccttcagtggaatttgatactgttccaaacaaaaaacagcagcatgaagtgaatgttgctatctccaattcctttggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61555" stop="58349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61255" g_stop="60878" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="552" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59237" g_stop="59124" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="666" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59033" g_stop="58932" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="768" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58846" g_stop="58780" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="835" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58672" g_stop="58649" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="859" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E726464" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61255" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
          <exon e_start="59237" e_stop="59124"/>
          <exon e_start="59033" e_stop="58932"/>
          <exon e_start="58846" e_stop="58780"/>
          <exon e_start="58672" e_stop="58649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAGGTAATTATGTCTACATTGTATTGCATCTCTTCATTTATTCGAATTTATCAGTGTATGTTCATCATTAAGTGTTTCCCCATATTGTTCCAGTCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTCGTGAGTTGTCCTATATTTTCAAACAAATGTCAATTGCTATGCTCATTCTTCATTTGCAAATCTCTAATTGTAATGAATATTGCAGAATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTGGTAAGATACACTTCAAATTATAGCACCATATTATATTTTCAAAAATTAAGCATTCTCATGAATAATTGAAAAACTTCCAACATAACATCAATTTCTTACATATGCAGCTATCTCCAATTCCTTTGGTTTTG</genome_strand>
        <mrna_strand>GTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAATCAAG..........................................................................................TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC.....................................................................................AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG...........................................................................................................CTATCTCCAATTCCTTTGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298959" ref_strand="+" ref_description="SGN-E298959 [cLET-42-G22]">
      <seq>gctgatttgatgatagctggtggaactgaagctgccataattcctattgggttgggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttctagaccgtgggacaaagatagagacggctttgttatgggagagggagctggagtgttggtgatggaaagtttggagcatgcaatgaaacgaggagcacccataattgcagagtacttgggtggtgcagtaaattgtgatgctcatcacatgactgaccccagagctgatggacttggtgtttcttcatgcatccttagtagccttgaagatgctggagtgtcaccagaagaggttaattacataaatgctcatgcaacttccacaatagttggtgatctagctgaggtaaacgctattaagaaggtattcaagaacacttcagagatcaaaatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61348" stop="58832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61048" g_stop="60878" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="345" r_length="174" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59237" g_stop="59132" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="451" r_length="106" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E298959" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61048" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
          <exon e_start="59237" e_stop="59132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATG</genome_strand>
        <mrna_strand>GCTGATTTGATGATAGCTGGTGGAACTGAAGCTGCCATAATTCCTATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCTAGACCGTGGGACAAAGATAGAGACGGCTTTGTTATGGGAGAGGGAGCTGGAGTGTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCCATAATTGCAGAGTACTTGGGTGGTGCAGTAAATTGTGATGCTCATCACATGACTGACCCCAGAGCTGATGGACTTGGTGTTTCTTCATGCATCCTTAGTAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTACATAAATGCTCATGCAACTTCCACAATAGTTGGTGATCTAGCTGAGGTAAACGCTATTAAGAAGGTATTCAAGAACACTTCAGAGATCAAAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401381" ref_strand="+" ref_description="SGN-E401381 [PPC-4-A9]">
      <seq>cagaggtgaagctgatttgatgcttgctggtggaactgaagctgccatgatacctattggtttaggaggttttgtggcatgcagagctttgtctcaaaggaatgatgatccacaaactgcttccagaccatgggacaaagatagagatggatttgttatgggagagggggctggaatcttggtgatggaaagtttggagcatgcaatgaaacgaggagcaccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgactgatccccgagctgatggtcttggtgtttcttcatgtattcttagcagccttgaagatgctggagtgtcaccagaagaggttaactacattaatgctcatgcaacttccaccattgttggtgatctagccgaaataaatgctgtcaagaaggttttcaagaccacctcaggaatcaaaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61357" stop="58833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61058" g_stop="60878" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="355" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59237" g_stop="59133" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="460" r_length="105" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E401381" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61058" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
          <exon e_start="59237" e_stop="59133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAGGTATTTACTTCCCTCTCCAAGCAGTTGAGGTTATACTCATTGTCTACACTCTACTCAATAGTTAAAGAGCGGGGTAAAAGAAATACTGGAAATAGCAAATCACTCTAGATGTTTTCCGTTAAAAAATTGGAAACTTGTCAAAATGTTATCTTGGGGCTACCAAACCCAAGATCCGTCATATCTCATACTTTTGCTTCTCAGAATTCTTCTTTGATTGGGGAAATGGGGAAAGGTTACAGTGAATATACTTAACTATTGACATGAAATAGATTTCTTTTCATGGTGCATTGGCCTTGTTGTAGCCTTGTAGGACATTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGTCACATTCACATTTCAATAGAACCATAGAATTGTCCTTTCAGTAATCCTATTTAAGATGTTCAAGCAGAATGACATATGGAGAATTCATATGGCTGGTAGCCACTAGTTGGGATCGACCTTCTTTGTTGTTGTTGATGATCAAACAGCTGAAAGTGAAACTGTCTCTTTATTTTGATCATCCAGAACTTTAGAACCTAGTTTGGTGGGTACTCGAAACATTTAGCTTTTGATAATGTGGTATAGTCTTTGGTAAGAGGTACAGATATGTATTGGCTAGATTTTGCTAAAAGTTGAAGTTGAATTTGATTACTGAATTGATCTTCTCTTTTTCCTTTGTAGGTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAAT</genome_strand>
        <mrna_strand>CAGAGGTGAAGCTGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATGATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGGAATGATGATCCACAAACTGCTTCCAGACCATGGGACAAAGATAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACTGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTACATTAATGCTCATGCAACTTCCACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTCAAGAAGGTTTTCAAGACCACCTCAGGAATCAAAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366551" ref_strand="+" ref_description="SGN-E366551 [cLPT-13-I17]">
      <seq>tttctgtgtgtgttttgttttaggctgaacggaagatattgtgcaacgagtgaaccttcattccttaatagttaaaaaaaaatacttgtgacattatagtcttttccatgtcaattttatgcccatagactctctcatccatgtcccattgcctctttgagaaaaaaatgctaccttccatgttagctttattctaatttcagattccaagtaaagattactccctctctctttactagataaagacatccccttattgagagtaaacgaaaggttactattcaattttaatcatcaaagacacatgttaaaactgctggtgatcagaaaaaattggattctttcaccattaataaaaatgcacctaaaatgcttgtacaattcatcctagatgctaagccccctcactggagctttagtgtcttcttctcagatctgattttaacaataccaaccttctcaccttgttgcgtcgaaagaagtaacacagactttactttgaaccactatgccctaagctacagcaattgtctagaatcagcatgatatctgttgatgaattaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="60441" stop="59277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60141" g_stop="59577" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E366551" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60141" e_stop="59577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTGTGT-TTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTC-TTTCCATGTCAATTTTATGCCCATAGA--CTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAAT-AAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGT</genome_strand>
        <mrna_strand>TTTCTGTGTGTGTTTTGTTTTAGGCTGAACGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAGTTAAAAAAAAAT-ACTTGTGACATTATAGTCTTTTCCATGTCAATTTTATGCCCATAGACTCTCTCATCCATGTCCCATTGCCTCTTTGAGAAAAAAATGCTACCTTCCATGTTAGCTTTATTCT-AATTTCAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTACTAGATAAAGACATCCCCTTATTGAGAGTAAACGAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGTGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAAATGCACCTAAAATGCTTGTACAATTCATCCTAGATGCTAAGCCCCCTCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCGTCGAAAGAAGTAACACAGACTTTACTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAATCAGCATGATATCTGTTGATGAATTAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476873" ref_strand="+" ref_description="SGN-E476873 [cSTB-46-O5]">
      <seq>cgtccaagccttaatcgaaaagggtcacaggaaaattactccatttttcataccatatgccataacaaatatgggttcggccttgcttgcaattgatgttggtttcatgggaccgaactactcgatttcaactgcttgtgctacctccaactattgtttctatgctgctgcaaatcacatccgtcgaggtgaagctgatttgatgatagctggtggaactgaagctgccataattcctattgggttgggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatcctcaaactgcttctagaccgtgggacaaagatagagacggctttgttatgggagagggagctggagtgttggtgatggaaagtttggagcatgcaatgaaacgaggagcaccaataattgcagaatatttgggtggtgcagtaaattgtgatgcacatcacatgactgaccctagagctgatggacttggtgtttcttcatgtatccttagtagccttgaagatgctggagtgtcaccagaagaggttaattacataaatgctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61540" stop="60146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61241" g_stop="60878" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="538" r_length="174" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E476873" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61241" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG</genome_strand>
        <mrna_strand>CGTCCAAGCCTTAATCGAAAAGGGTCACAGGAAAATTACTCCATTTTTCATACCATATGCCATAACAAATATGGGTTCGGCCTTGCTTGCAATTGATGTTGGTTTCATGGGACCGAACTACTCGATTTCAACTGCTTGTGCTACCTCCAACTATTGTTTCTATGCTGCTGCAAATCACATCCGTCGAGGTGAAGCTGATTTGATGATAGCTGGTGGAACTGAAGCTGCCATAATTCCTATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCTCAAACTGCTTCTAGACCGTGGGACAAAGATAGAGACGGCTTTGTTATGGGAGAGGGAGCTGGAGTGTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCAATAATTGCAGAATATTTGGGTGGTGCAGTAAATTGTGATGCACATCACATGACTGACCCTAGAGCTGATGGACTTGGTGTTTCTTCATGTATCCTTAGTAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339995" ref_strand="+" ref_description="SGN-E339995 [cTOF-3-M13]">
      <seq>tgcagagctttgtctcaaagaaatgatgatccacaaactgcttctagaccgtgggacaaagatagagacggctttgttatgggagaagggagctggagtgttggtgatggaaagtttggagcatgcaatgaaacgaggagcacccataattgcagagtacttgggtggtgcagtaaattgtgatgctcatcacatgactgaccccagagctgatggacttggtgtttcttcatgcatccttagtagccttgaagatgctggagtgtcaccagaagaggttaattacataaatgctcatgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61279" stop="60146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60979" g_stop="60878" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60456" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="277" r_length="174" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E339995" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60979" e_stop="60878"/>
          <exon e_start="60629" e_stop="60456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAG-AGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG</genome_strand>
        <mrna_strand>TGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCTAGACCGTGGGACAAAGATAGAGACGGCTTTGTTATGGGAGAAGGGAGCTGGAGTGTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCCATAATTGCAGAGTACTTGGGTGGTGCAGTAAATTGTGATGCTCATCACATGACTGACCCCAGAGCTGATGGACTTGGTGTTTCTTCATGCATCCTTAGTAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330313" ref_strand="+" ref_description="SGN-E330313 [cTOD-4-B12]">
      <seq>cgagctggtgttttggtaggaacaggaatgggtggtcttacagttttttcagatggcgtccaagccttaatcgaaaagggtcacaggaaaattactccatttttcataccatatgccataacaaatatgggttcggccttgcttgcaattgatgttggtttcatgggacctaactactcaatttcaactgcttgtgctacctccaactattgtttctatgctgctgcaaatcacattcgtcgaggtgaggctgatttgatgatagctggtggaactgaagctgccataattcctattgggttgggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttctagaccgtgggacaaagatagagacggctttgttatgggagagggagctggagtgttggtgatggaaagtttggagcatgcaatgaaacgaggagcacccataattgcagagtacttgggtggtgcagtaaattgtgatgctcatcacatgactgaccccanagctgatggacttggtgtttcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61596" stop="60199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61297" g_stop="60878" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60500" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="550" r_length="130" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E330313" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61297" e_stop="60878"/>
          <exon e_start="60629" e_stop="60500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCAT</genome_strand>
        <mrna_strand>CGAGCTGGTGTTTTGGTAGGAACAGGAATGGGTGGTCTTACAGTTTTTTCAGATGGCGTCCAAGCCTTAATCGAAAAGGGTCACAGGAAAATTACTCCATTTTTCATACCATATGCCATAACAAATATGGGTTCGGCCTTGCTTGCAATTGATGTTGGTTTCATGGGACCTAACTACTCAATTTCAACTGCTTGTGCTACCTCCAACTATTGTTTCTATGCTGCTGCAAATCACATTCGTCGAGGTGAGGCTGATTTGATGATAGCTGGTGGAACTGAAGCTGCCATAATTCCTATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCTAGACCGTGGGACAAAGATAGAGACGGCTTTGTTATGGGAGAGGGAGCTGGAGTGTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCCATAATTGCAGAGTACTTGGGTGGTGCAGTAAATTGTGATGCTCATCACATGACTGACCCCANAGCTGATGGACTTGGTGTTTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310933" ref_strand="+" ref_description="SGN-E310933 [cLEZ-17-N15]">
      <seq>ttggtggtgatagattagaaaagattgataaagagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttttctcagatggtgtacaaaacctaattgaaaagggtcacaggaaaattactccattttttgtaccatatgccataacaaacatgggttctgctttgcttggtattgatcttggttttatgggaccaaactactcaatctcaactgcttgtgctacctccaattactgtttttatgctgccgctaatcacatccgtagaggtgaagcggatttgatgcttgctggtggaactgaagctgccataatacctattggtttaggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttccaggccgtgggacaaagaaagagatggatttgttatgggagagggggctggaatcttggtgatggaaagtttggagcatgcaatgaaacgaggagcgccaataattgcagagtatttgggtggtgcagttaattgtgatgcttatcacatgaccgatccccgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62156" stop="60223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61856" g_stop="61834" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="60878" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="455" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60629" g_stop="60523" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="562" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E310933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61856" e_stop="61834"/>
          <exon e_start="61309" e_stop="60878"/>
          <exon e_start="60629" e_stop="60523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGC</genome_strand>
        <mrna_strand>TTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290348" ref_strand="+" ref_description="SGN-E290348 [cLES-20-O3]">
      <seq>tcttggtagcgacagagataaaaagattgataaggagcgagctggtgttttggtaggaacaggaatgggtggtcttacagttttttcagatggcgtccaagccttaatcgaaaagggtcacaggaaaattactccatttttcataccatatgccataacaaatatgggttcggccttgcttgcaattgatgttggtttcatgggacctaactactcaatttcaactgcttgtgctacctccaactattgtttctatgctgctgcaaatcacattcgtcgaggtgaggctgatttgatgatagctggtggaactgaagctgccataattcctattgggttgggaggttttgtggcatgcagagctttgtctcaaagaaatgatgatccacaaactgcttctagaccgtgggacaaagatagagacggctttgttatgggagagggagctggagtgttggtgatggaaagtttggagcatgcaatgaaacgaggagcacccataattgcagagtacttgggtggtgcagtaaattgtgatgctcatcacatgactgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61611" stop="60230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61309" g_stop="60878" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="457" r_length="432" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60629" g_stop="60530" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="557" r_length="100" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E290348" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61309" e_stop="60878"/>
          <exon e_start="60629" e_stop="60530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTGGTAAGCTTCCTAGCGATTATCATATTTTGGTCATAGGAAGTACATCTAAGCTACTTTGAGCAAGTTATGTGTGGTCCAATCCCGAAGCAACTAAATATGCAATAAACTGCTATCCATGAATTGCTGGTCTTTCTTTCATTGCACGTAGACTGCATAATTAGATTAAGCACTAGAGATTTCTGTCACTTTAATACAATCTATTCACCGTTTGGAAAGTTATTATGAAAATTGAATGACATTCTTGGCAGGTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATC</genome_strand>
        <mrna_strand>ATTGATAAGGAGCGAGCTGGTGTTTTGGTAGGAACAGGAATGGGTGGTCTTACAGTTTTTTCAGATGGCGTCCAAGCCTTAATCGAAAAGGGTCACAGGAAAATTACTCCATTTTTCATACCATATGCCATAACAAATATGGGTTCGGCCTTGCTTGCAATTGATGTTGGTTTCATGGGACCTAACTACTCAATTTCAACTGCTTGTGCTACCTCCAACTATTGTTTCTATGCTGCTGCAAATCACATTCGTCGAGGTGAGGCTGATTTGATGATAGCTGGTGGAACTGAAGCTGCCATAATTCCTATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCTAGACCGTGGGACAAAGATAGAGACGGCTTTGTTATGGGAGAGGGAGCTGGAGTGTTG........................................................................................................................................................................................................................................................GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCACCCATAATTGCAGAGTACTTGGGTGGTGCAGTAAATTGTGATGCTCATCACATGACTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692292" ref_strand="+" ref_description="SGN-E692292 [LH_Ea08F10]">
      <seq>tacaaaacacatcgtttacatcgaaaagctttttgcttcttcttcgtcttcttcttgctccgccacctcaaatctgaaaacccatttcagttaacaatggaagcaatccaatctctatcatttcgtccatctccactcgatcctctacgaaaaaacatcccccagttcaccaatgtgaggtcattgggtgctaaaagagtgcctttaactataacagcttctgcatctactgtttctgctccaaaaagagagaaagacccaaagaaaagggtggttataactgggacgggtcttgtttctgtgtttgggaatgatgtcgatacttactatgacagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaaatttcctacgagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgatagattagaaaagattgataaggagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttttctcagatggtgtacaaaacctaattgaaaagggtcacaggaaaattactccattttttgtaccatatgccattacaaacatgggttctgctttgcttggtattgatcttggttttatgggaccaaactactcaatctcaactgcttgtgctacctccaattactgtttttatgctgccgcaaatcacatccgtagaggtgaagcggatttgatgcttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62653" stop="60730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62384" g_stop="61834" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61030" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="829" r_length="280" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E692292" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62384" e_stop="61834"/>
          <exon e_start="61309" e_stop="61030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAC-ACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTG</genome_strand>
        <mrna_strand>TACAAAACACATCGTTTACATCGAAAAGCTTTTTGCT--T-CTTCTTCGTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCATCTCCACTCGATCCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACTATAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTGGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGTCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAGGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATTACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCAAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707194" ref_strand="+" ref_description="SGN-E707194 [FA32BC07]">
      <seq>cctgttttctctctttctgtacaagcacaaaacacacactccctttctctctctaaaaatagtagtaatacactcgcatcgttaacatcgaaaagctttttgctgctgcttcttcttcttcttcttgctccgccacctcaaatctgaaaacccatttcagttaacaatggaagcaatccaatctctatcatttcgtccgtctccactcgaacctctacgaaaaaacatcccccagttcaccaatgtgaggtcattgggtgctaaaagagtgcctttaacagtaacagcttctgcatctactgtttctgctccaaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgtttgggaatgatgccgatacttactatgacagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaaatttcctacgagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgatagattagaaaagattgataaagagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttttctcagatggtgtacaaaacctaattgaaaagggtcacaggaaaattactccattttttgtaccatatgccataacaaacatgggttctgctttgcttggtattgatcttggttttatgggaccaaactactcaatctcaactgcttgtgctacctccaattactgtttttatgctgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62752" stop="60771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62452" g_stop="61834" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61071" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="858" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E707194" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62452" e_stop="61834"/>
          <exon e_start="61309" e_stop="61071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTCTCTCTTTCTGTACAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGC</genome_strand>
        <mrna_strand>CCTGTTTTCTCTCTTTCTGTACAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321094" ref_strand="+" ref_description="SGN-E321094 [cTOB-13-K21]">
      <seq>ctgcttcttcttcttcttcttgctccgccacctcaaatctgaaaacccatttcagttaacaatggaagcaatccaatctctatcatttcgtccgtctccactcgaacctctacgaaaaaacatcccccagttcaccaatgtgaggtcattgggtgctagaagagtgcctttaacagtaacagcttctgcatctactgtttctgctccaaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgtttgggaatgatgccgatacttactatgacagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaaatttcctacgagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgatagattagaaaagattgataaagagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62647" stop="60948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62347" g_stop="61834" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61248" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="576" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E321094" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62347" e_stop="61834"/>
          <exon e_start="61309" e_stop="61248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTC</genome_strand>
        <mrna_strand>CTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAGAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202772" ref_strand="+" ref_description="SGN-E202772 [cLEB-1-F2]">
      <seq>gcacgagaaaacatcccccagttcaccaatgtgaggtcattgggtgctagaagagtgcctttaacagtaacagcttctgcatctactgtttctgctccaaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgtttgggaatgatgccgatacttactatgacagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaaatttcctacgagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttggtggtgatagattagaaaagattgataaagagagagcaggtgttcttgtaggaacaggaatgggtggtcttacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62536" stop="60952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62238" g_stop="61834" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61309" g_stop="61252" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="463" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E202772" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62238" e_stop="61834"/>
          <exon e_start="61309" e_stop="61252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAGGTTCGGCTTTTTTTTCGTTCTTTTGATATTTCAATTTGGTTATATCTGTCAAGATTTTCGGGGTTTTTTTGAGGTATGATGAATTTGCTGTAATGGGGCTTGCATGATGTGCTTTTGGCTGGTGTTGATTTGGTCGTTTCTTTTATTTTATTTGGAGATGTGGAGAATTTGGAGAAAATTGCTAGCTGATTGTGTTTATTTTGGTTTTTTAGCTGGTTTATGCCATTTATTGCTTGTATTTCATTTCTATTATCACCAAAATGCTGGAATTGGGCTTTCATGATGTCTTAGAGACCATAATTGTGTAAAAGTCTGAATCCTGCCAGTTGCCAGTGCATCGTGGAATACCAGAAACAATCAAAACTACTGTTCCTCGGAAAACAAATTTGTCATTAGTGCTTTTGAAAAGCTTTGATGTGAATAATTAGCATAGCTACTTGTTCAGCCTCCATTGTTTATCTGGATTTGTTTTTTATCTTCTGCAGTACATGACTCTAGGTTGTTAATTTATGTTCTTCCTGCAGATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTT</genome_strand>
        <mrna_strand>GCACGAGAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAGAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441945" ref_strand="+" ref_description="SGN-E441945 [cSTA-31-J7]">
      <seq>gaagcacaaaacacactccccctttctctctctctaaaaatagtaatacactcacatcgttcacatcgaaaagctttttgcttctgcttcttcttcttcttcttgctccgccacctcaaatctcaaaacccatttcagttaacaatggaagcaatgcaatctctatcatttcgtccatctccactcgatcctcttcgaaaaaacatgccccaattcaccaatgtaaggtcattgggtgctaaaagagtgccttttattatatcagcttctgcatccactgtttctgctcccaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgttcgggaatgatgtcgatacttactatgaaagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaagtttcctacaagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaaggtatgccattgttgctggcaagaaagctttggaaaatgcagatcttgggggtgatagattagaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62730" stop="61534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62431" g_stop="61834" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E441945" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62431" e_stop="61834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG</genome_strand>
        <mrna_strand>GAAGCACAAAACACACTCCCCCTTTCTCTCTCTCTAAA-AATAGTAATACACTCACATCGTTCACATCGAAAAGCTTTTTGCTTCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTCAAAACCCATTTCAGTTAACAATGGAAGCAATGCAATCTCTATCATTTCGTCCATCTCCACTCGATCCTCTTCGAAAAAACATGCCCCAATTCACCAATGTAAGGTCATTGGGTGCTAAAAGAGTGCCTTTTATTATATCAGCTTCTGCATCCACTGTTTCTGCTCCCAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTCGGGAATGATGTCGATACTTACTATGAAAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAGTTTCCTACAAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGGGGTGATAGATTAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560614" ref_strand="+" ref_description="SGN-E560614 [20296]">
      <seq>tctctctcttgctgtagaagcacaaagcacactccccctttctctctctctctaaaaatagtaatacactcacatcgttcacattcgaaaagctttttgcttctgcttcttcttcttcttcttgctccgccacctcaaatctcaaaacccatttcagttaacaatggaagcaatgcaatctctatcatttcgtccatctccactcgatcctcttcggaaaaacatgccccaattcaccaatgtaaggtcattgggtgctaaaagagtgccttttattatatcagcttctgcatccactgtttctgctcccaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgttcgggaatgatgtcgatacttactatgaaaaacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttctaagtttcctacaagatttgggggacaaattcgtgggtttacatctgaagggtatattgatgggaagaatgataggaggcttgatgattgtttaacggtatgccattgttgctggcaagaaagctttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62723" stop="61566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62447" g_stop="61866" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E560614" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62447" e_stop="61866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTTTCTGTACAAGCACAAAACACACACTCCCTTTCTCTCTCT-AAAAATAGTAGTAATACACTCGCATCGTTAACA-TCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAA-GGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAA</genome_strand>
        <mrna_strand>TCTCTCTCTTGCTGTAGAAGCACAAAGCACACTCCCCCTTTCTCTCTCTCTCTAAAAATAGTAATACACTCACATCGTTCACATTCGAAAAGCTTTTTGCTTCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTCAAAACCCATTTCAGTTAACAATGGAAGCAATGCAATCTCTATCATTTCGTCCATCTCCACTCGATCCTCTTCGGAAAAACATGCCCCAATTCACCAATGTAAGGTCATTGGGTGCTAAAAGAGTGCCTTTTATTATATCAGCTTCTGCATCCACTGTTTCTGCTCCCAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTCGGGAATGATGTCGATACTTACTATGAAAAACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAGTTTCCTACAAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAACGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281295" ref_strand="+" ref_description="SGN-E281295 [cLEL-1-B11](-)">
      <seq>gtaaacccacgaatttgtcccccaaatctcgtaggaaatttagaagcatcaaaacgatcaataagcgaaatcccactttcaccagccaaaagtctgtcatagtaagtatcggcatcattcccaaacacagaaacaagacccgtcccagttataacaacccttttctttgggtctttctctctttttggagcagaaacagtagatgganaagctgttactgttaaaggcactcttctagcacccaatgacctcacattggtgaactgggggatgttttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="61655" stop="62536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61955" g_stop="62238" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E281295" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61955" e_stop="62238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCACGAATTTGTCCCCCAAATCTCGTAGGAAATTTAGAAGCATCAAAACGATCAATAAGCGAAATCCCACTTTCACCAGCCAAAAGTCTGTCATAGTAAGTATCGGCATCATTCCCAAACACAGAAACAAGACCCGTCCCAGTTATAACAACCCTTTTCTTTGGGTCTTTCTCTCTTTTTGGAGCAGAAACAGTAGATGCAGAAGCTGTTACTGTTAAAGGCACTCTTTTAGCACCCAATGACCTCACATTGGTGAACTGGGGGATGTTTTTTCGTAG</genome_strand>
        <mrna_strand>GTAAACCCACGAATTTGTCCCCCAAATCTCGTAGGAAATTTAGAAGCATCAAAACGATCAATAAGCGAAATCCCACTTTCACCAGCCAAAAGTCTGTCATAGTAAGTATCGGCATCATTCCCAAACACAGAAACAAGACCCGTCCCAGTTATAACAACCCTTTTCTTTGGGTCTTTCTCTCTTTTTGGAGCAGAAACAGTAGATGGANAAGCTGTTACTGTTAAAGGCACTCTTCTAGCACCCAATGACCTCACATTGGTGAACTGGGGGATGTTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418477" ref_strand="+" ref_description="SGN-E418477 [STM-27-J21]">
      <seq>gaagcacaaaacacactccccctttctctctctctaaaaatagtaatacactcacatcgttcacatcgaaaagctttttgcttctgcttcttcttcttcttcttgctccgccacctcaaatctcaaaacccatttcagttaacaatggaagcaatgcaatctctatcatttcgtccatctccactcgatcctcttcgaaaaaacatgccccaattcaccaatgtaaggtcattgggtgctaaaagagtgccttttattatatcagcttctgcatccactgtttctgctcccaaaagagagaaagacccaaagaaaagggttgttataactgggacgggtcttgtttctgtgttcgggaatgatgtcgatacttactatgaaagacttttggctggtgaaagtgggatttcgcttattgatcgttttgatgcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62730" stop="61695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62431" g_stop="61995" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E418477" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62431" e_stop="61995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTA</genome_strand>
        <mrna_strand>GAAGCACAAAACACACTCCCCCTTTCTCTCTCTCTAAA-AATAGTAATACACTCACATCGTTCACATCGAAAAGCTTTTTGCTTCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTCAAAACCCATTTCAGTTAACAATGGAAGCAATGCAATCTCTATCATTTCGTCCATCTCCACTCGATCCTCTTCGAAAAAACATGCCCCAATTCACCAATGTAAGGTCATTGGGTGCTAAAAGAGTGCCTTTTATTATATCAGCTTCTGCATCCACTGTTTCTGCTCCCAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTCGGGAATGATGTCGATACTTACTATGAAAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318738" ref_strand="+" ref_description="SGN-E318738 [cTOB-9-H18]">
      <seq>acatcgaaaagctttttgctgctgcttcttcttcttcttcttgctccgccacctcaaatctgaaaacccatttcagttaacaatggaagcaatccaatctgtatcatttcgtccgtctccactcgaacctctacgaaaaaacatcccccagctcaccaatgtgaggtcattgggtgctagaagagcgcctttaacagtaacagcttctgcatctactggttctgctccaaaaagagagaaagacccaaagaaaagggtcggtataactgggacgggtcttggttctgagtttgggaatgatgccgatacttactatgacagactctgggctggtgaaagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="62668" stop="61726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62368" g_stop="62026" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E318738" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62368" e_stop="62026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGG</genome_strand>
        <mrna_strand>ACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTGTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGCTCACCAATGTGAGGTCATTGGGTGCTAGAAGAGCGCCTTTAACAGTAACAGCTTCTGCATCTACTGGTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTCGGTATAACTGGGACGGGTCTTGGTTCTGAGTTTGGGAATGATGCCGATACTTACTATGACAGACTCTGGGCTGGTGAAAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730654" ref_strand="+" ref_description="SGN-E730654 [LA24DB03]">
      <seq>ctttggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattacgattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcagtatcattttttacattagttattataaattcataatacataaatatgtcatttaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69070" stop="66284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68771" g_stop="68725" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="122" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="185" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="245" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="335" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="443" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="566" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66857" g_stop="66584" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="840" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E730654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68771" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</genome_strand>
        <mrna_strand>CTTTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTACGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548186" ref_strand="+" ref_description="SGN-E548186 [TUS-58-O2]">
      <seq>ttcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcagtatcatttttttacattagttattataaattcataatacataaatatgtcatttaacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67409" stop="66284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67306" g_stop="67287" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="143" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66857" g_stop="66584" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="418" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="428"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E548186" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67306" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCA-TTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</genome_strand>
        <mrna_strand>TTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747272" ref_strand="+" ref_description="SGN-E747272 [GI|47104690]">
      <seq>ttcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcagtatcatttttttacattagttattataaattcataatacataaatatgtcatttaacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67409" stop="66284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67306" g_stop="67287" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="143" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66857" g_stop="66584" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="418" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="434"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E747272" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67306" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCA-TTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</genome_strand>
        <mrna_strand>TTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283433" ref_strand="+" ref_description="SGN-E283433 [cLER-12-H1]">
      <seq>tcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcagtatcatttttttacattagttattataaattcataatacataaatatgtcatttaacttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67409" stop="66284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67305" g_stop="67287" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="142" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66857" g_stop="66584" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="417" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="427"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E283433" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67305" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCA-TTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</genome_strand>
        <mrna_strand>TCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734401" ref_strand="+" ref_description="SGN-E734401 [LB12CC10]">
      <seq>gcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69076" stop="66344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68776" g_stop="68725" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="127" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="190" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="250" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="340" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="448" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="571" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66857" g_stop="66644" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="785" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="797"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E734401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68776" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCA</genome_strand>
        <mrna_strand>GCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282033" ref_strand="+" ref_description="SGN-E282033 [cLES-2-L21]">
      <seq>acgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctattttttcttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67796" stop="66344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67496" g_stop="67476" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="129" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="252" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66857" g_stop="66644" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="466" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="476"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E282033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67496" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCA</genome_strand>
        <mrna_strand>ACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540846" ref_strand="+" ref_description="SGN-E540846 [TUS-61-F9](-)">
      <seq>cagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaataaagtttttctatttttcttcaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="68265" stop="66344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67965" g_stop="67928" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="98" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="188" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="296" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="419" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66857" g_stop="66647" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="629" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="631" polyA_stop="653"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E540846" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67965" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTT</genome_strand>
        <mrna_strand>CAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTA-TTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610910" ref_strand="+" ref_description="SGN-E610910 [60654]">
      <seq>ttcacacgctaagcctacctgatcaggtcaagctggcagagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctacaccatcaaaggctggtgtccttgggttaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagagctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtggcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaaacagaatttatttgaagggagcaatttgagactgtaatccaatctaatgtagtagctcaagacctgaagcagttaggaattattatgaaactaataaagattttctagctctagtttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67700" stop="66347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67501" g_stop="67476" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="134" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="257" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66857" g_stop="66657" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="458" r_length="201" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="485"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E610910" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67501" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCT</genome_strand>
        <mrna_strand>TTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCAGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACACCATCAAAGGCTGGTGTCCTTGGGTTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGAGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTGGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAACAGAATTTATTTGAAGGGAGCAATTTGAGACTGTAATCCAATCTAATGTAGTAGCTCAAGACCTGAAGCAGTTAGGAATTATTATGAAACTAATAAAGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283592" ref_strand="+" ref_description="SGN-E283592 [cLES-1-E13](-)">
      <seq>agattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaagcagaatttatttgaagggagcaatttgatagtgtaatccaatctaatgtagtagctcaaggcctgaagcaattaggaattattatgaaactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67867" stop="66365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67567" g_stop="67476" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="200" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="323" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66857" g_stop="66662" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="519" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E283592" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67567" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTT</genome_strand>
        <mrna_strand>AGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283591" ref_strand="+" ref_description="SGN-E283591 [cLES-1-E13]">
      <seq>tgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaaccaagaaacagaatttatttgaagggagcaatttgatagtgtaatccaatctaaagtagtagctcaaggcctgaagcaattaggaattattatgaaactaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="67868" stop="66365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67715" g_stop="67709" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="97" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="205" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="328" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66857" g_stop="66665" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="521" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E283591" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67715" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAA</genome_strand>
        <mrna_strand>TGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAACAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAAAGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701732" ref_strand="+" ref_description="SGN-E701732 [FA16DB09]">
      <seq>aacaagaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtanctggagctgctggcgtgggtgttggctcaaccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcattaggattgtcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69459" stop="66467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69159" g_stop="68938" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="288" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="363" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="426" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="486" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="684" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="807" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66767" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="898" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E701732" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69159" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCA</genome_strand>
        <mrna_strand>AACAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTANCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAACCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731344" ref_strand="+" ref_description="SGN-E731344 [LA26DD09]">
      <seq>agaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtaactggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcgggagtcaaatccatagctcattcattaggattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69452" stop="66472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69152" g_stop="68938" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="281" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="419" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="479" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="569" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="677" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="800" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66772" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="886" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E731344" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69152" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTC</genome_strand>
        <mrna_strand>AGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAACTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGGAGTCAAATCCATAGCTCATTCATTAGGATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728559" ref_strand="+" ref_description="SGN-E728559 [LA18AH03]">
      <seq>gcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69437" stop="66481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69137" g_stop="68938" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="266" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="341" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="404" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="464" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="554" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="662" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="785" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66781" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="862" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E728559" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69137" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATT</genome_strand>
        <mrna_strand>GCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727872" ref_strand="+" ref_description="SGN-E727872 [LA16AA08]">
      <seq>agaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtanctggagctgctggcgtgggtgttggctcanccatcaacaagctcaacgatcaggtagcaatgatcgcgggagtcaaatccatagctcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69452" stop="66483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69152" g_stop="68938" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="281" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="356" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="419" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="479" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="569" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="677" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="800" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66783" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="875" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E727872" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69152" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCA</genome_strand>
        <mrna_strand>AGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTANCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCANCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGGAGTCAAATCCATAGCTCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730553" ref_strand="+" ref_description="SGN-E730553 [LA24BH10]">
      <seq>ccgttgagcatctcactgtatacaccagntttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctcagccatncacaagctcaacgatcaggtagcaatgatcgcggaagtcaaatccatagctcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69442" stop="66483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69144" g_stop="68938" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="274" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="349" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="412" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="472" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="562" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="670" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="793" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66783" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="868" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E730553" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69144" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGCATCTCACTGTATACACCAG-TTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCA</genome_strand>
        <mrna_strand>CCGTTGAGCATCTCACTGTATACACCAGNTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATNCACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728041" ref_strand="+" ref_description="SGN-E728041 [LA16CB03]">
      <seq>agcagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtanctggagctgctggcgtgggtgttggctcagccatcaacaagctcaacgatcaggtagcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69446" stop="66511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69146" g_stop="68938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="350" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="413" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="563" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="671" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="794" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="841" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E728041" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69146" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGAT</genome_strand>
        <mrna_strand>AGCAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTANCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731032" ref_strand="+" ref_description="SGN-E731032 [LA25DG08]">
      <seq>cagtagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtacctggagctgctggcgtgggtgttggctcagccatcaacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69446" stop="66533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69147" g_stop="68938" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="414" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="564" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="672" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="795" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66833" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="820" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E731032" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69147" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTCAGCCATCAACAAGC</genome_strand>
        <mrna_strand>CAGTAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTACCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTCAGCCATCAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614952" ref_strand="+" ref_description="SGN-E614952 [64745]">
      <seq>gcatctcaatctattcaccagtttctcccaaaaaccaattagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctaggagaaaatgtaccacaagggctctgctttcatattccaaagatgcagtcttgaaagaatttcatgagaaaaaagcactaaagattatcgcaggattgcagaatctggacaaagcgaatgtggcttctgttgttactgctgcagataagggaggtgcaacacatgtagatatagcttgtgaccctgagctggtgaagctcgctataagcctgacttcccttccggtttgtgtttcttctgtagatcccgcagcatttccagctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgagcagattctgaacctaacgaaggagacaaagaggttacttccatcagtggtattatcagtcactgtgcctcacacgctaagcctacctgatcaggtcaagctggcagagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctacaccatcaaaggctggtgtccttgggttaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagagctgtcaatatccccgtcatgtgtcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgctggcgtgggtgttggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69437" stop="66660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69137" g_stop="68938" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="263" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="338" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="401" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="461" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="551" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="659" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66969" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="781" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66857" g_stop="66847" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="792" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E614952" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69137" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66969"/>
          <exon e_start="66857" e_stop="66847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTGGTAATGCCTTACTGACACTATCTTTAATCTTAGGGAACATTCTTCTTATATAGCAAAATACTTGAGGCATCTCAACCAAGTTATTGAAACTTGTGTGAATGTTGAACTCAGGGTGTTGGCTC</genome_strand>
        <mrna_strand>GCATCTCAATCTATTCACCAGTTTCTCCCAAAAACCAATT---AGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGGAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCAGTCTTGAAAGAATTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAGAATCTGGACAAAGCGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGTGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTCGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTAGATCCCGCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAGCAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAGGTTACTTCCATCAGTGGTATTATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCAGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACACCATCAAAGGCTGGTGTCCTTGGGTTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGAGCTGTCAATATCCCCGTCATGTG-TCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG...............................................................................................................GGTGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688043" ref_strand="+" ref_description="SGN-E688043 [T3_tus_85_F07]">
      <seq>aagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgtagctggagctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69447" stop="66675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69147" g_stop="68938" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="414" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="564" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="672" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66975" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="789" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E688043" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69147" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCT</genome_strand>
        <mrna_strand>AAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340981" ref_strand="+" ref_description="SGN-E340981 [cTOF-5-H3]">
      <seq>aagaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaaactggaaggtgttgacatcatccaaacagaangaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaagcaacaccaacactagcagctgcttattcgatttcaagggctgtcatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69456" stop="66687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69156" g_stop="68938" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="285" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="360" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="423" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="483" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="573" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="681" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66987" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="785" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E340981" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69156" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAG-AACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTA</genome_strand>
        <mrna_strand>AAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAAACTGGAAGGTGTTGACATCATCCAAACAGAANGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAA-...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTC-ATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E457074" ref_strand="+" ref_description="SGN-E457074 [cPRO-1-E24]">
      <seq>agaagatgagcatctcaatctattcaccagtttctcccaaaaaccaattagtatttttgaaactaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctaggagaaaatgtaccacaagggctctgctttcatattccaaagatgcagttttgaaagaatttcatgagaaaaaagcactaaagattattgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggtgcaacacatgtagatatagcttgtgaccctgagctggtgaagctcgctataagcctgacttcccttccggtttgtgtttcttctgtggatcccgcagcatttcctgctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttttctcctgaacagattctgaacctaacgaaggagacaaagaagttacttccatcagtggtattatcagtcactgtgcctcacacgctaagcctacctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtgttcttggattaatcgagaanggcacaccaacactagcagctgcttattcgatttncagagctgtnncatatcccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69446" stop="66688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69146" g_stop="68938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="272" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="347" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="410" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.152" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="560" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="668" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66988" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="772" r_length="104" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E457074" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69146" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCA-ATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGT</genome_strand>
        <mrna_strand>AGAAGATGAGCATCTCAATCTATTCACCAGTTTCTCCCAAAAACCAATT---AGTATTTTTGAAACTAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGGAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCAGTTTTGAAAGAATTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATTGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGTGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTCGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCCGCAGCATTTCCTGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTTTCTCCTGAACAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGGTATTATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTGTTCTTGGATTAATCGAGAAN...................................................................................................................................................................................................GGCACACCAACACTAGCAGCTGCTTATTCGATTTNCAGAGCTGTNNCATAT-CCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405529" ref_strand="+" ref_description="SGN-E405529 [PPC-18-F19]">
      <seq>gaaataaaagaagatgagcatctcaatctattcaccagtttctcccaaaaaccaattagtatttttgaaactaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctaggagaaaatgtaccacaagggctctgctttcatattccaaagatgcagttttgaaagaatttcatgagaaaaaagcactaaagattattgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggtgcaacacatgtagatatagcttgtgaccctgagctggtgaagctcgctataagcctgacttcccttccggtttgtgtttcttctgtggatcccgcagcatttcctgctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttttctcctgaacagattctgaacctaacgaaggagacaaagaagttacttccatcagtggtattatcagtcactgtgcctcacacgctaagcctacctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtgttcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagagctgtcaatatccccgtcatgtggtcatctggattgagtgcagtcacagcaccaatggcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69454" stop="66690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69154" g_stop="68938" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="280" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.152" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="478" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="568" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="676" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66990" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="778" r_length="102" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E405529" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69154" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATC</genome_strand>
        <mrna_strand>GAAATAAAAGAAGATGAGCATCTCAATCTATTCACCAGTTTCTCCCAAAAACCAATT---AGTATTTTTGAAACTAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGGAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCAGTTTTGAAAGAATTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATTGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGTGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTCGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCCGCAGCATTTCCTGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTTTCTCCTGAACAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGGTATTATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTGTTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGAGCTGTCAATATCCCCGTCATGTGGTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540848" ref_strand="+" ref_description="SGN-E540848 [TUS-61-F9]">
      <seq>gaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacnacaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagcaccaatggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69445" stop="66691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69145" g_stop="68938" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="274" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="349" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="412" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="472" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="562" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="670" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="66991" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="771" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E540848" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69145" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="66991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAAT</genome_strand>
        <mrna_strand>GAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACNACAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324238" ref_strand="+" ref_description="SGN-E324238 [cTOC-4-A2]">
      <seq>acacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaagaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgcttattcgatttcaagggctgtcaatatccccgtcatgtgttcatctggattgagtgcagtcacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="68828" stop="66702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68528" g_stop="68463" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="129" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="189" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="279" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="387" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67091" g_stop="67002" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="477" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E324238" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68528" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="67002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCA</genome_strand>
        <mrna_strand>ACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAAGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348874" ref_strand="+" ref_description="SGN-E348874 [cTOF-29-N22]">
      <seq>gaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggatttggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagactggaaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaagggctggtattcttggattaatcgagaaggcacaccaacactagcagctgcttattcgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69454" stop="66969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69154" g_stop="68938" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="283" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="358" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="421" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="482" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="572" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="680" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="67057" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="714" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E348874" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69154" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="67057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGA-TTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGG-AAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCGATTTC</genome_strand>
        <mrna_strand>GAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAG-ACTGGAAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAGGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GC-ACACCAACACTAGCAGCTGCTTATTCGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347188" ref_strand="+" ref_description="SGN-E347188 [cTOF-25-K4]">
      <seq>gaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaattcgagaggcancacccacactagcagctgcttattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69451" stop="66762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69151" g_stop="68938" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="280" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="355" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="478" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="568" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="676" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="67062" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="706" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E347188" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69151" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="67062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAA-TCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTATTCG</genome_strand>
        <mrna_strand>GAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATTCGAG-AG...................................................................................................................................................................................................GCANCACCCACACTAGCAGCTGCTTATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348153" ref_strand="+" ref_description="SGN-E348153 [cTOF-27-G12]">
      <seq>atagacaagaagaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaagaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69465" stop="66969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69165" g_stop="68938" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="294" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="369" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="432" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="492" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="582" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="690" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="67066" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="716" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E348153" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69165" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="67066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTA</genome_strand>
        <mrna_strand>ATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAAGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731183" ref_strand="+" ref_description="SGN-E731183 [LA26BE11]">
      <seq>agataaagaagatgagcatctcactgtatacaccangtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcgagaaggcaacaccaacactagcagctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69452" stop="66969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69152" g_stop="68938" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="282" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="357" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="420" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="480" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="570" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67287" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="678" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67091" g_stop="67066" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="704" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E731183" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69152" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67287"/>
          <exon e_start="67091" e_stop="67066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGAAGATGAGCATCTCACTGTATACACCA-GTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAGGTAACACAACAGTGCAACACATTTGTAGTCTATACTACTAATAAGGATTAGCTATCTGTTGATAGTATGCTAGTTGAAAGTGAAAAAAGGCAAGGAATTGAGAAATTTGTGGGAACAATCAAGTTTTTCTTTCAATCCTCAGGGTTATGATGATTTCTTGTATTAACTTCATTTTGATATTGTTCATTTACACAGGCAACACCAACACTAGCAGCTGCTTA</genome_strand>
        <mrna_strand>AGATAAAGAAGATGAGCATCTCACTGTATACACCANGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG...................................................................................................................................................................................................GCAACACCAACACTAGCAGCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288003" ref_strand="+" ref_description="SGN-E288003 [cLES-7-O22]">
      <seq>ccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccagagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggattaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69342" stop="66992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69042" g_stop="68938" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="171" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="246" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="369" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="459" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67292" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="562" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E288003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69042" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCG</genome_strand>
        <mrna_strand>CCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAGAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698796" ref_strand="+" ref_description="SGN-E698796 [FA07CE04]">
      <seq>acaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatcaaaggctggtattcttggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69423" stop="66996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69123" g_stop="68938" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="252" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="327" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="390" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="450" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="540" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67296" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="639" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E698796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69123" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTA</genome_strand>
        <mrna_strand>ACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729089" ref_strand="+" ref_description="SGN-E729089 [LA19DH02]">
      <seq>agaagatgagcatctcacttgtatacaccagtttctcccaaaaaccaattacaagtatttttngaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatgagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatcctaacagaaggaggaaaatgctctactccatcaaaggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69446" stop="67011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69146" g_stop="68938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="277" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="352" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="415" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="475" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="565" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67311" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="649" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E729089" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69146" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAGCATCTCAC-TGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTT-GAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCT</genome_strand>
        <mrna_strand>AGAAGATGAGCATCTCACTTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTNGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATGAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCTAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E617131" ref_strand="+" ref_description="SGN-E617131 [90605]">
      <seq>catctattcaccagtttctcccaaaaaccaattagtatttttgaaactaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctaggagaaaatgtaccacaagggctctgctttcatattccaaagatgcagtcttgaaagaatttcatgagaaaaaagcactaaagattatcgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggtgcaacacatgtagatatagcttgtgaccctgagctggtgaagctcgctataagcctgacttcccttccggtttgtgtttcttctgtgcgatcccgcagcatttccggctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgagcagattctgaacctaacgaaggagacaaagaggttacttccatcagtggtattatcagtcactgtgcctcacacgctaagcctacctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctactccatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69431" stop="67017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69131" g_stop="68938" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="256" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="331" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="395" r_length="64" r_score="0.905"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="455" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="545" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67317" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="623" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E617131" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69131" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTG-GATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCA</genome_strand>
        <mrna_strand>CA-TCTATTCACCAGTTTCTCCCAAAAACCAATT---AGTATTTTTGAAACTAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGGAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCAGTCTTGAAAGAATTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGTGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTCGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGCGATCCCGCAGCATTTCCGGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAGCAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAGGTTACTTCCATCAGTGGTATTATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265329" ref_strand="+" ref_description="SGN-E265329 [cLEI-9-L1]">
      <seq>aaaatgtaccacaagggctctgctttcacatttcaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggaccaagagaatgtgggttntgttgttgctgttgtgggttcgggaggggcggcacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatcatccaaacagaaggaggaaaatgctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69316" stop="67024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69016" g_stop="68938" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="145" r_length="66" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.80"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="220" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="283" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="343" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="433" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67324" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="504" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E265329" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69016" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTAC</genome_strand>
        <mrna_strand>AAAATGTACCACAAGGGCTCTGCTTTCACATTTCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACCAAGAGAATGTGGGTTNTGTTGTTGCTGTTGTGGGTTCG...........................................................................................................................................................................................GGAGGGGCGGCACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477426" ref_strand="+" ref_description="SGN-E477426 [cSTB-48-M5]">
      <seq>ctggccagaaattcactccatagacaagaaagaaataaaagaagatgagcatctcaatctattcaccagtttctcccaaaaaccaattagtatttttgaaactaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctaggagaaaatgtaccacaagggctctgctttcatattccaaagatgcagttttgaaagaatttcatgagaaaaaagcactaaagattattgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggtgcaacacatgtagatatagcttgtgaccctgagctggtgaagctcgctataagcctgacttcccttccggtttgtgtttcttctgtggatcccgcagcatttcctgctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttttctcctgaacagattctgaacctaacgaaggagacaaagaagttacttccatcagtggtattatcagtcactgtgcctcacacgctaagcctacctgatcaggtcaagctggccgagcaattagaactggaaggtgttgacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69472" stop="67052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69185" g_stop="68938" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="311" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="386" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="449" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.152" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="509" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="599" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67352" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="642" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E477426" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69185" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTATCCCCTCACTCCATAGACAAGA-AGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCA</genome_strand>
        <mrna_strand>CTGGC-CAGAAATTCACTCCATAGACAAGAAAGAAATAAAAGAAGATGAGCATCTCAATCTATTCACCAGTTTCTCCCAAAAACCAATT---AGTATTTTTGAAACTAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGGAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCAGTTTTGAAAGAATTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATTGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGTGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTCGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCCGCAGCATTTCCTGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTTTCTCCTGAACAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGGTATTATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728999" ref_strand="+" ref_description="SGN-E728999 [LA19CF04]">
      <seq>taactttncttaacccctcactnccatagacaagaagaagaaaaagaagatgagcatctcactggtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagctggccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69488" stop="67081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69188" g_stop="68938" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="320" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="458" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="518" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="608" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67381" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="622" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E728999" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69188" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTT-CTTATCCCCTCACT-CCATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACT-GTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCTGGCCGA</genome_strand>
        <mrna_strand>TAACTTTNCTTAACCCCTCACTNCCATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCTGGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367169" ref_strand="+" ref_description="SGN-E367169 [cLPT-5-L10]">
      <seq>aaaagaagatgagcatctcattgtatacaccagtttctcccaaaaaccaattacaagtatttctgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcatgagaaaaaagcactaaagattatcgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaagcttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgagcagattctgaacctaacgaaggagacaaagaagttacttccatcagtgataatatcagtcactgtgcctcacacgctaagcctacctgatcaggtcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69449" stop="67174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69149" g_stop="68938" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="278" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="353" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="416" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="476" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="566" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67387" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="574" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E367169" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69149" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCT</genome_strand>
        <mrna_strand>AAAAGAAGATGAGCATCTCATTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTCTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAGCAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATAATATCAGTCACTGTGCCTCACACGCTAAGCCTACCTGATCAG.................................................................................GTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267877" ref_strand="+" ref_description="SGN-E267877 [cLEI-12-D11]">
      <seq>aagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcactgtgcctcacacgctaagccttcctgatcaggtcaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69447" stop="67174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69147" g_stop="68938" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="414" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="474" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67476" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="564" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67394" g_stop="67387" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="572" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E267877" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69147" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67476"/>
          <exon e_start="67394" e_stop="67387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAGGTTTGAAAAAGCACTTTCCTATGACATGCTAAGTTCAAATGGAAGAAAAGTCACTTTTTTTTTGTCGTATCATATTGACAGGTCAAGCT</genome_strand>
        <mrna_strand>AAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG.................................................................................GTCAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335457" ref_strand="+" ref_description="SGN-E335457 [cTOE-2-A11]">
      <seq>agaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgaacagattttgaacctaacgaaggagacaaagaagttacttccatcagtgatattatcagtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69446" stop="67206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69146" g_stop="68938" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="350" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="413" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67506" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="533" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E335457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69146" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACT</genome_strand>
        <mrna_strand>AGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365244" ref_strand="+" ref_description="SGN-E365244 [cLPT-16-K13]">
      <seq>tccattagacaagaagaagaaaaagaagatgagcatctcattgtatacaccagtttctcccaaaaaccaattacaagtatttctgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcatgagaaaaaagcactaaagattatcgcaggattgcagaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaagcttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggattggtgttctctcctgagcagattctgaacctaacgaaggagacaaagaagttacttccatcagtgataatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69468" stop="67212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69168" g_stop="68938" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="298" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="373" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="436" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="496" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67512" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="550" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E365244" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69168" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCA-TAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCA</genome_strand>
        <mrna_strand>TCCATTAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCATTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTCTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAGAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAGCAG...............................................................................................................................................ATTCTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318880" ref_strand="+" ref_description="SGN-E318880 [cTOB-11-K7]">
      <seq>tagacaagaagaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggtttgtgtttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctatgagaagggnattgtgttctctcctgaacagattttgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69464" stop="67402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69164" g_stop="68938" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="293" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="368" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="431" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="491" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143">
            <donor d_prob="0.845" d_score="0.94"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67565" g_stop="67555" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="502" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E318880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69164" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67709"/>
          <exon e_start="67565" e_stop="67555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAGGTGTGTAGGATGACTTTTCCAGAGTTTCATAATGTCAAATAGATCAAAAGATTTGAGAACTAGCAACAATTATAGGAGTTTGATTTTGGTTATGAACCTGTGTGATGTCCATTACTTCTCACCGTGCTGATATTGCTTTTCAGATTTTGAACCT</genome_strand>
        <mrna_strand>TAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGNATTGTGTTCTCTCCTGAACAG...............................................................................................................................................ATTTTGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366882" ref_strand="+" ref_description="SGN-E366882 [cLPT-6-D22]">
      <seq>cgaggcaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgcgtttcatttgctagaagaaaatgtaccacaagggctctgctttcatattccaaagatgctgtcttgaaagagtttcatgagaaaaaagcactaaagattatcgcaggattgcagaatctggacaaagagaacgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaagcttgctataagcctgacttcccttccggtttgtgtttcttctgcggatccttcagcatttccagctgctgtggaagcaggagccttaatggttgagatcggaaactatgactcgttctatgagaagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69409" stop="67429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69114" g_stop="68938" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="318" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="381" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.152" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67729" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="421" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E366882" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69114" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGAT</genome_strand>
        <mrna_strand>CGAGGCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGCGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCATATTCCAAAGATGCTGTCTTGAAAGAGTTTCATGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAGAATCTGGACAAAGAGAACGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAGCTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGTTTCTTCTGCGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTAATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278008" ref_strand="+" ref_description="SGN-E278008 [cLER-4-H9]">
      <seq>aagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctgacttcccttccggcttgtggttcttctgtggatccttcagcatttccagctgctgtggaagcaggagccttgatggttgagatcggaaactatgactcgttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69444" stop="67439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69144" g_stop="68938" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="273" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68463" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="348" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67990" g_stop="67928" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="411" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.152" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67768" g_stop="67739" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="441" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E278008" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69144" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68463"/>
          <exon e_start="67990" e_stop="67928"/>
          <exon e_start="67768" e_stop="67739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCGGTAAATCCTGTCTGTCTAAATTTGTTCAGTTTTTTCCTTTAGCCCACATTATGCAACATTTGAACTGATCTATGGATGAGCTGTAACGTAATCAACTGATCTACTATTTCAACCTTCGCTGTGGATTTGTCCTTGGGCAACATTTAAATGATGGGACAACTTCTCAGGTCTAAATACGGTTCTTTTTGTGAAAATATTCATGACAAATGTGCCTTAAACTTTATCTTCTACTCCAGCCGCTGATTGCAATTTTCAGTTTCTCTGTTATTACTGAACATTCTGGTTGAATCATGTATATTTGTTGGTCCTTTCTACTTCCACAAATCATATGTTATCTGAGTTACATCTTCCTTGCAAGGAGTGCTTTGAGCTTGTCAGTTCAAAAATCTCACCATTTTAGGCATTTATGTCCTCAACCAGTATCTCTTTTAGTTGCATAGATTAGCTTAAATCTGGTGTCACATGCATGCAGGTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATGGTACGACTTATTCTTATCATTTTTCCATTCCATTCATAAACACCATAAGCAAGACTATGAAATAGTTAAGCACCATGATTGCATAACATACAGTTCTGTTTCATTGAGAGGAGTAAGTTCCTTTTCGTAGCTCATCATAAAGTAAGTTATCTGGTGCAGGTTGAGATCGGAAACTATGACTCGTTCTAT</genome_strand>
        <mrna_strand>AAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTGGTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG...............................................................................................................................................................GTTGAGATCGGAAACTATGACTCGTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279263" ref_strand="-" ref_description="SGN-E279263 [cLEL-4-G14](-)">
      <seq>ccaaagaattcggcacgagaaaagaagatgagcattttactgtatacaccagtttctcgggggaaccaattacaagtattttcccccaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69453" stop="68174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69150" g_stop="68938" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="232" r_length="214" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="298" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68474" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="362" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E279263" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279263" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69150" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTT-TGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGA</genome_strand>
        <mrna_strand>GAAAAGAAGATGAGCATTTTACTGTATACACCAGTTTCTCGGGGGAACCAATTACAAGTATTTTCCCCCACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289893" ref_strand="+" ref_description="SGN-E289893 [cLET-9-E24]">
      <seq>gagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttggaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69439" stop="68174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69139" g_stop="68938" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="268" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68474" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="332" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E289893" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69139" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGA</genome_strand>
        <mrna_strand>GAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGGAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277696" ref_strand="-" ref_description="SGN-E277696 [cLEL-5-I23](-)">
      <seq>gcacgagagacaagattaagaaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaacttgctataagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69469" stop="68176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69170" g_stop="68938" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="299" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68476" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="361" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E277696" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277696" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69170" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCT</genome_strand>
        <mrna_strand>GCACGAGAGACAAGATTAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279068" ref_strand="-" ref_description="SGN-E279068 [cLEL-4-A22](-)">
      <seq>gcacgagaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagctggtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69453" stop="68189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69157" g_stop="68938" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="285" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68489" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="334" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E279068" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69157" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAAC</genome_strand>
        <mrna_strand>GCACGAGA-AAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281924" ref_strand="+" ref_description="SGN-E281924 [cLES-2-F6]">
      <seq>aaaaagaagatgagcatctcactgtatacaccagtttctcccaaaaaccaattacaagtatttttgaaaccaaatcagaatccccttctactaggtgattctgttcttccaaaacgtgtttcatttgctagaagaaaatgtaccacaagggctctgctttcacattccaaagatgctgttttgaaagagtttcacgagaaaaaagcactaaagattatcgcaggattgcaaaatctggacaaagagaatgtggcttctgttgttactgctgcagataagggaggagcaacacatgtagatatagcttgtgaccctgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="69450" stop="68197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69150" g_stop="68938" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68790" g_stop="68725" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="279" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68497" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="320" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E281924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69150" e_stop="68938"/>
          <exon e_start="68790" e_stop="68725"/>
          <exon e_start="68537" e_stop="68497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAGGTATCATTTTAACTATCATTTTTTTTTTGCGAGTTCCATAGATAGATTGTTCCCTTTTTCCTAACAAGTTTTAATACATAGATGGTGAAGTTCAGGTAGGAAAAGAGAACAAGTTAAAATTACTAATGATTCATTCTTCTGCTTCAGATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAGGTTTAGTCTTCTGTGTTCTTTCACAATGATTTACAATTTCGCATTTTTCAAAAGAGAAAAAATAGGTTTTATGACTGTATGTTCTTATCAAGGGCTAAGTAGGAATTGTAATTGTTAGGATTCTGTGTTGTGGAGTTATTGAAATTTCAGTAAATGTACTAAGCCTGACTCTTTGATCTGCTTATAGGGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCT</genome_strand>
        <mrna_strand>AAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTCTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG...................................................................................................................................................ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG...........................................................................................................................................................................................GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593590" ref_strand="+" ref_description="SGN-E593590 [36824]">
      <seq>ctaaccctcagaacacttgctagcatattgggaggccaattctccccttccctcctcccccttttgcctttgccagatatgccaaatggtttcccaggtaattgccataggtcttgaatctggctgcaaactttacaatgattgtggtgtagttttgttggtgtaattttgtgtagagtattgccagctgtgtgccattggatactttcttgagaagcagcctcatctgccaaaaaattcttgtgtcctgctttctgctggaaaaggcaatataatagcactttctacagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="70688" stop="69794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70388" g_stop="70088" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E593590" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70388" e_stop="70088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTACAGTACAACTTGCC</genome_strand>
        <mrna_strand>CTAACCCTCAGAACACTTGCTAGCATATTGGGAGGCCAATTCTCCCCTTCCCTCCTCCCCCTTTTGCCTTTGCCAGATATGCCAAATGGTTTCCCAGGTAATTGCCATAGGTCTTGAATCTGGCTGCAAACTTTACAATGATTGTGGTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCCAGCTGTGTGCCATTGGATACTTTCTTGAGAAGCAGCCTCATCTGCCAAAAAATTCTTGTGTCCTGCTTTCTGCTGGAAAAGGCAATATAATAGCACTTTCTACAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713175" ref_strand="+" ref_description="SGN-E713175 [FB06DG02]">
      <seq>cccatacatggagaagattctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagagaagtttaaagacaaactgatttttacactcccagcaactggtcagatcacggaagttaatgttaactatgaacctgaagagagaagagcaacaattattaaccttaatttatgggctactgcagctgcttgtttcatcttgcttatagtcacagccactgtattcatttcttacttggatcaacctgtgagatcccgaccatctgctcctcctggcacaccaagtgtagctgcacctgtaactcctgagcgaagcagtcctgctggagtaagcgaacattcacctcggacacctcaacctttcttggattatgttaggaggacaattgatgaaactccatactacagacaagactttaggaggagggctaaccctcagaacacttactagcatattgtggggccaattcacctcttccctactcccccttttgcctttgctagatatgccaaatggtttctcaggtaattgccaaaggtcttgaatctggctgcaaactttacaatgatagtgttgtagttttgttggtgtaattttgtgtagagtattgcaagctgtgtgtcattggatactttctagagaagcagcctcatctgccaaaaaattcttatgtcctgctttctgctggaaaaggcaatacaacagcactttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71124" stop="69802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70824" g_stop="70102" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E713175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70824" e_stop="70102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTA</genome_strand>
        <mrna_strand>CCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567475" ref_strand="+" ref_description="SGN-E567475 [11607]">
      <seq>tgcttgtttcaatcttgcttattagtcacagccactgtatacatttcttacttggatcaacctgtgagatcccgaccatctgctcctcctggcacgccaagtgtagctgcaccttggtaactcctgcagcgaagcagtccctgctggagtaagcgaacattcccctcggacacctcaacctttcttggattatgttaggaggacaattgatgaaactccatactacagacaagactttaggaggagggctaaccctcagaacacttactagcatattggggggccaattctccccttccctcctcccccttttgcctttgcctttgccagatatgccaaatggtttctcaggtaattgccaaaggtcttgaatctggctgcaaactttacaatgatagtggtgtagttttgtggtgtaattttgtgtaagtattgcaagctgtgtcattggatactttcttgagaagcaggctcatctgcaaaaaaattcttgtgtcctgctttctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="70930" stop="69829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70630" g_stop="70129" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E567475" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70630" e_stop="70129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTGTTTC-ATCTTGCTTA-TAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACC-T-GTAACTCCTG-AGCGAAGCAGT-CCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTG-C--T---AGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTG</genome_strand>
        <mrna_strand>TGCTTGTTTCAATCTTGCTTATTAGTCACAGCCACTGTATACATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACGCCAAGTGTAGCTGCACCTTGGTAACTCCTGCAGCGAAGCAGTCCCTGCTGGAGTAAGCGAACATTCCCCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGGGGGGCCAATTCTCCCCTTCCCTCCTCCCCCTTTTGCCTTTGCCTTTGCCAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGGTGTAGTTTTG-TGGTGTAATTTTGTGTA-AGTATTGCAAGC--TGTGTCATTGGATACTTTCTTGAGAAGCAGGCTCATCTGCAAAAAAATTCTTGTGTCCTGCTTTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608896" ref_strand="+" ref_description="SGN-E608896 [24893]">
      <seq>gagggaacattcccctcggacacctcaacctttcttggatttatgttaggaggacaattgatgaaactccatactacagacaagactttaggaggagggctaaccctcagaacacttactagcatattgggggaccaattctccccttccctcctcccccttttgcctttgccagatatgccaaatagtttctcaggtaattgccaaaggtcttgaatctggctgcaaactttacaatgatagtggtgtagttttgtaggtgtaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="70785" stop="69923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70486" g_stop="70214" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E608896" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70486" e_stop="70214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGA-TTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTA</genome_strand>
        <mrna_strand>GAGGGAACATTCCCCTCGGACACCTCAACCTTTCTTGGATTTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGGGGGACCAATTCTCCCCTTCCCTCCTCCCCCTTTTGCCTTTGCCAGATATGCCAAATAGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGGTGTAGTTTTGTAGGTGTAAAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689175" ref_strand="+" ref_description="SGN-E689175 [t3_tus_80_G23]">
      <seq>gttgatccaccttatgttggttatgtgaagccgtgggttgatcttgatacgggtaattcatattgccttttcttcccttactctcctgaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttagctgttactattaaggcatcactgatcggagagcagaatatctcaggatctgcatcagcactttttgttggaggtttcatcattccgggaacggaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaatacagatgtgagtatctactggcatgatcgggaacgactagctgtcagacccatacatggagaagattctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagagaagtttaaagacaaactgatttttacactcccagcaactggtcagatcacggaagttaatgttaactatgaacctgaagagagaagagcaacaattgttaaccttaatctatgggctactgcagctgcttgtttcatcttgcttatagtcacagccactgtattcatttcttacttggatcaacctgtgagatcccgaccatctgctcctcctggcacaccaagtgtagctgcacctgtaactcctgagcgaagcagtcctgctggagtaagcgaacattcacctcggacacctcaacctttcttggattatgttaggaggacaattgatgaaactccatactacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71472" stop="70109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71172" g_stop="70409" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E689175" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71172" e_stop="70409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAG</genome_strand>
        <mrna_strand>GTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAATACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTGTTAACCTTAATCTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568543" ref_strand="+" ref_description="SGN-E568543 [12843]">
      <seq>acttgccactccaaagtcaggaggcattaaacaggatttagctgttactattaaggcatcactcatcggagagcagaatatctcaggatctgcatcagcactttttgtcggaggtttcatcattccggngaacagaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaacacagatgtgagtatctactggcatgatcgggaacggctagctgtcagacccatacatggagaagattctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagaaaagtttaaagacaaactgatttttacactcccaggcaactggtcagatcatggaagttaatgttaactatgaacctgaagagagaagagcaacaactgctaaccttaatctatgggttactgcagctgcttgtttcatcttgcttattgtcacagccactgtattcatttcttacttggatcaacctgtgagatcccgaccatctgctcctcctggcacgccgagtgtagctgcacctgtaactcctgagcgaagcagtcctgctggagtaagcgaacattcccctcggacacctcaaactttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71374" stop="70151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71074" g_stop="70451" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E568543" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71074" e_stop="70451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGG-GAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCA-GCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTT</genome_strand>
        <mrna_strand>ACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTCATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTCGGAGGTTTCATCATTCCGGNGAACAGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGGCTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAAAAGTTTAAAGACAAACTGATTTTTACACTCCCAGGCAACTGGTCAGATCATGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAACTGCTAACCTTAATCTATGGGTTACTGCAGCTGCTTGTTTCATCTTGCTTATTGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACGCCGAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCCCCTCGGACACCTCAAACTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324604" ref_strand="+" ref_description="SGN-E324604 [cTOC-9-G9]">
      <seq>ttgatccaccttatgttggttatgtgaagccgtgggttgatcttgatacgggtaattcatattgccttttcttcccttactctcctgaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttagctgttactattaaggcatcactgatcggagagcagaatatctcaggatctgcatcagcactttttgttggaggtttcatcattccgggaacggaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaatacagatgtgagtatctactggcatgatcgggaacgactagctgtcagacccatacatggagaagattctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagagaagtttaaagacaaactgatttttacactcccagcaactggtcagatcacggaagttaatgttaactatgaacctgaagagagaagagcaacaattgttaaccttaatctatgggctactgcagctgcttgtttcatcttgcttatagtcacagccactgtattcatttcttacttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71471" stop="70275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71171" g_stop="70575" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E324604" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71171" e_stop="70575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATC</genome_strand>
        <mrna_strand>TTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAATACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTGTTAACCTTAATCTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443524" ref_strand="+" ref_description="SGN-E443524 [cSTA-38-D2]">
      <seq>aaacagtgcaattttcttgtttgattgcctggttgatccaccttatgttggttatgtgaagccgtgggttgatcttgatactggtaattcatattgccttttctttccttactctccagaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttatctgttactattaaggcatcactcatcggagagcagaatatctcaggatctgcatcagcactttttgttggaggtttcatcattccgggaacagaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaacacagatgtgagtatctactggcatgatcgggaacggctagctgtcagacccatacatggagaagattctcgaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagaaaagtttaaagacaaactgatttttacactcccagcaactggtcagatcatggaagttaatgttaactatgaacctgaagagagaagagcaacaactgctaaccttaatctatgggctactgcagctgcttgtttcatcttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71503" stop="70311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71203" g_stop="70611" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E443524" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71203" e_stop="70611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTA</genome_strand>
        <mrna_strand>AAACAGTGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACTGGTAATTCATATTGCCTTTTCTTTCCTTACTCTCCAGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTATCTGTTACTATTAAGGCATCACTCATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACAGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGGCTAGCTGTCAGACCCATACATGGAGAAGATTCTCGAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAAAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCATGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAACTGCTAACCTTAATCTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443513" ref_strand="+" ref_description="SGN-E443513 [cSTA-38-B2]">
      <seq>accttatgttggttatgtgaagccgtgggttgatcttgatactggtaattcatattgccttttctttccttactctccagaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttatctgttactattaaggcatcactcatcggagagcagaatatctcaagatctgcatcagcactttttgttggaggtttcatcattccgggaacagaaggagattcattgcagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaacacagatgtgagtatctactggcatgatcgggaacggctagctgtcagacccatacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71464" stop="70513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71164" g_stop="70813" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E443513" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71164" e_stop="70813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGA</genome_strand>
        <mrna_strand>ACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACTGGTAATTCATATTGCCTTTTCTTTCCTTACTCTCCAGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTATCTGTTACTATTAAGGCATCACTCATCGGAGAGCAGAATATCTCAAGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACAGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGGCTAGCTGTCAGACCCATACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485963" ref_strand="+" ref_description="SGN-E485963 [cSTE-20-G4]">
      <seq>tttgagtgttcgaatatgaaactgcaaactacagttacggtgtcacagccagagatgatgtctgttgatgctccaagggaaatcctgacaaatgtgccgcttcctgcaaatggatatagctttcttgtaaaactcaatgatgcttatcgccacaagtataaatctgctaaaaacagggcaattttcttgtttgattgcctggttgatccaccttatgttggttatgtgaagccatgggttgatcttgatactggtaattcatattgccttttcttcccttattctccagaaagtttggtacttgccactccaaagtcaggaggcattaaacaggatttagctgttactattaaggcatcactcatcggagagcagaatatctcaggatctgcatcagcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="71673" stop="70670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71373" g_stop="70970" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E485963" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71373" e_stop="70970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGAGAAATCCTGACAAATGTGCCACTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTT</genome_strand>
        <mrna_strand>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGGGAAATCCTGACAAATGTGCCGCTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCATGGGTTGATCTTGATACTGGTAATTCATATTGCCTTTTCTTCCCTTATTCTCCAGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTCATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95795" stop="97627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96094" g_stop="96237" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96238" i_stop="97243" i_length="1006">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97244" g_stop="97327" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96094" e_stop="96237"/>
          <exon e_start="97244" e_stop="97327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTA-AACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95804" stop="97803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96104" g_stop="96243" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="97249" i_length="1006">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97489" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="380" r_length="241" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96104" e_stop="96243"/>
          <exon e_start="97250" e_stop="97489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATT-TTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTA-AACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="95859" stop="97793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96159" g_stop="96243" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="97249" i_length="1006">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97489" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="326" r_length="241" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96159" e_stop="96243"/>
          <exon e_start="97250" e_stop="97489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATAT-TTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTTGTTGGGTATGTAGCAAGAATTGATGGGAAATAGAGGAAAAGAGAGGAATTTGAAAAGTTTAGAACTTGAAAGGTTGGGAACTTGAAAAGTCCTCTAATGCTTTAATAAAAAAGGCAATAGTCCCTCATCGGTAATGGAAATGAAAATAGGAGAGTTTAAATAAATAAACACTCCTATTAATTATTAAAAGGGTTGGAAATAGGGACCCCTCGCACCGTCGTCGCTCGCTTCGGCTTTGGCTTTGGCAAATCGATCGAGAGATAATTTTTTGGACAAATTTATTTTAATTATTTATTTGATTAATTAAATGGCCAAAAATTATTTTCAATTAATCAGTTGATAACAAAAATTAACCAACCGAAATGTTTTCAACTTTTTAGTTAACCCGACCCGACTCAGGTCCGCACGCGTGACCCGTTTTAAATTCCGTTATATTTAAAAATTTCCGCCACTGTTCTGAAAGGTTGCAACTTTCAGGAACAGTCAATACCATTTGAAAGTTTGCAACCTTTCATTAATGGTTGTGTCAATTCTGAAAGGGTTGCAACCTTTCAGAATATATTATTCTTGCCTATAAATACCATTCAGTTTTTAGAATATTTACTAACGAATTTTCTGATCTTCCTACTTCTTAAAAAACACATTTTTCTTCGTGTACTTTCCTGCTGTGGATTGATTCGCTGACAGTAGAGTTTTTGGTATCTATACTCTACTGATTAAGATCATTTTACCCTGGGAGGTTATATTCCAAATCAAACCTCGGATACTAGAGGGGAATAATTTCCTTAAGGGGACACTGTAAATTCAGTGGACTTGATTTTCTTCCTAAATTATCAAAAAGAGTATTCAAGATTCTGGTAAGTTTTACAGATTAAATTATTTTTACAAATAAATTTCTGTTCATCTTATTTACTGGTTCTAAAAATCTCAGTTACTTCGTGTTTCTGAATGATTTATCACAACCAGTAATTTCTGATTTTCTTAACACAGATTGGCAACAGTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATT-TTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538064" ref_strand="+" ref_description="SGN-E538064 [TUS-56-P20]">
      <seq>attataattgcagacttaaaggagtataaaatcactaagatttttgtctccaccaaaaatacagatttaaataatttccttaagattgttgccaatctgtgttaagaaaatcagaaattactggttgtgataaatcattcagaaacacgaagtaactgagatttttagaaccactaaataagatgaacataaatttatttgtaaaaataatttaatctgtaaaacttaccagaatcttgaatactctttttgataatttaggaaaaaaatcaagtccactgaattcacagtgtccccttaaggaaattattcccctgtagtatccgaggtttgatttggaatataacctcccagggtaaaatgatcttaatcagtagagtatagataccaaaaactctactgtcagcgaatcaatccacaacaggaaagtacacgaagaaaaatgtgttttttaagaagtaggaagatcagaaaattcgttagtaaatattctgaagactgaatggtatttataggcaagaataatatattctgaaaggttgcaactctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaatataacggaatttaaaacgggtcacgcgcgcggatccgagtcgggtcgggttaactaaaaagttgaaaacaattcggttaatttctgttatcaactgattaattgaaaataatttttggccatttaannttattaataaataattaaaataatttgtccaaaaaatatctctcgatcatttgccaagtcgaagccgagcgagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="97552" stop="96164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97251" g_stop="96464" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="857" r_length="778" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E538064" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97251" e_stop="96464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAACTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTTACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTAAAAACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGTGCGGACCTGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTGGTTAATTTTTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATCAAATAAATAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATTTGCCAAAGCCAAAGCCGAAGCGAGCGA</genome_strand>
        <mrna_strand>TTAAG-ATTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCACTAAATAAGATGAACATAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAAAAAATCAAGTCCACTGAATTCACAGTGTCCCCTTAAGGAAATTATTCCCCTGTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAACAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACTCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGCGCGGATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACAATTC----GGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAANNTTATTAATAAATAATTAAAAT-AATTTGTCCAAAAAA-TATCTCTCGATC-ATTTGCC-AAGTCGAAGCCG-AGCGAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456737" ref_strand="+" ref_description="SGN-E456737 [cSTS-30-K12]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaggaaaaattcagctttgataataataaggatggatcatatgtgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="97383" stop="98607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97683" g_stop="98307" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E456737" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97683" e_stop="98307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAA-AGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATG-AAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGCAATGATGAATCATATGTGATTGTTGA</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCA-TGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTC--AT--ATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGG---GTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAGGAAAAATTCAGCTTTGATAATAATAAGGATGGATCATATGTGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426394" ref_strand="+" ref_description="SGN-E426394 [STM-46-D5]">
      <seq>cccgtcagggactgcactttttggcgtctattggaatggcttttgatttccacataacgatttgttgattttgagaatcttttgtgtgggcataatgtatgcagtcccgaaccatgttgagatgtattcgagtaagagtgggaaatggaagaagctgaaaaatgagatgatttttcatattcttgagtttacttgcaatgtgattgttaaaggggtggcgtattggttggtttgtatgcctgataagttcggatcgcgtgctgtgtttgtgcgatttgatgtggggaaactagtttttgagaagttaccttcgataggaaggcgtaagaagcatcaatatcttgtggaattggagggttctctttgtatgttagactgggatcataaagatgattgtcatatggatgtttgggtaatggatgatgtagatggttggagtaagaaatacagtgttggaccgttagttgggtttgacctaatattgggctgtttgaggaatggtgacattgtagctaagaatgaaaatggagtgatattcttgtgtgatcccataactagttcaatcaaagaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="97383" stop="98565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97683" g_stop="98265" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E426394" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97683" e_stop="98265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAA-AGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATG-AAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTT</genome_strand>
        <mrna_strand>CCCGTCAGGGACTGCACTTTTTGGCGTCTATTGGAATGGCTTTTGATTTCC-ACATAACGATTTGTTGATTTTGAGAATCTTTTGTGTGGGCATAATGTATGCAGTCCCGAACCA-TGTTGAGATGTATTCGAGTAAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGATTTTTCATATTCTTGAGTTTACTTGCAATGTGATTGTTAAAGGGGTGGCGTATTGGTTGGTTTGTATGCCTGATAAGTTCGGATCGCGTGCTGTGTTTGTGCGATTTGATGTGGGGAAACTAGTTTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGGAGGGTTCTCTTTGTATGTTAGACTGGGATCATAAAGATGATTGTC--AT--ATGGATGTTTGGGTAATGGATGATGTAGATGGTTGGAGTAAGAAATACAGTGTTGGACCGTTAGTTGG---GTTTGACCTAATATTGGGCTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAAATGGAGTGATATTCTTGTGTGATCCCATAACTAGTTCAATCAAAGAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542435" ref_strand="+" ref_description="SGN-E542435 [TUS-63-L21]">
      <seq>ctaattttggacatggaactttgataaaccacctgtgcacgtgtatacagttatttaaataccttacctttatcttcttttattttttactttctgtgcatttcataaggatcttactgtccggcaagtaatagtatgaatcggtcattaactttattctcctgcaggttatttcctttattttttgttgacagttgttgctgcatgtaagggttggattttctggcgcactcctgtggctttgttgtaatgggtagctttcaccagaattcttttccttgctgcatttcttcttctcctttctttctggttaccctgttagtttttctgttaatgttggtagctgctgtactaatatggattgggaggggaaggaaccctattgattcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggacaggagataaatggtgtttgtacatctcttctcattgtttgtacatctcttctcatggttttatattattttataggtaccctttaaaacttgtgttccnttactgaagcttgatttgaaattctagacttcagtgggaacttctgctttctgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="100729" stop="129329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101029" g_stop="101285" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101286" i_stop="101359" i_length="74">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101360" g_stop="101411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="309" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101412" i_stop="102786" i_length="1375">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102787" g_stop="102882" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="405" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102883" i_stop="104117" i_length="1235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104118" g_stop="104182" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="470" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104183" i_stop="104453" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104454" g_stop="104587" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="602" r_length="132" r_score="0.761"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104588" i_stop="104642" i_length="55">
            <donor d_prob="0.000" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104643" g_stop="104761" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="721" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E542435" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101029" e_stop="101285"/>
          <exon e_start="101360" e_stop="101411"/>
          <exon e_start="102787" e_stop="102882"/>
          <exon e_start="104118" e_stop="104182"/>
          <exon e_start="104454" e_stop="104587"/>
          <exon e_start="104643" e_stop="104761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAGGTATGTGCAAACCCACCCTGTTCTTTTTCAACTGAGGCTATTTTAACTAGGACTAATGAAGAACTATTTTGCAGCTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTGTATCCTTGAACGTGTGAAAGTTATTGCTCTGAATTTAACTATTTGCAAACTAATTAATGAGGGGAACTTTCAGTATGGTGAACTTCCCATTTTTTCTCCAGAGTCATCTTCATTCCAGAAAATAGCAGTACCTGTTAATTTAATCAGTAAGCTGCCAAAAATCAGCAGTTTGCAAGACACTGCTACTGAGCTTTAGAATGTGGTTGACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTATTTGCTAAGTTGCGCAGACTCTTCACTTCCAATGCCCCACCCGTGTCGGATTTCCCAAAAATCCACTACTTTTGGAGAAACCGACATGTACCCGTTGTCATTTTTGAAGTGTCTTAGCAACATAAGTTATTTGATCCTAGTGCTATTCAAAGACTATAGATTCTTCTGCTCTACACCAAAAGTTGTCACTTGTCATGTATCTCTTTTCTTTTAATATCCGATCAGTAGTGCACCATTCAGTACACTCCTTTATACCTTTGTGGGGTAGAGAAGCTGTTTTTAATAGACTCTCGGCTAAAAAAATGGGAAAAACAGTTTTTACAGAACAGGTTTGAAAAATACAAGAGCAAAAAGATCTACAATGGAACTATCAAAGAAAAGAAAAATATTGACAACAAAATATAAAAGATAAGCGAAGTAAAAGAAACAACAGCAGAGCTAAATTTTAAAGAAAAAGGTAATGATACAACAAGAATTATAGTACTGATAAGTAGAAGAAGGAGAAAATAAGGAACTTCTCCACTTGAATACCAGTTATTTTATTTTCAGTGGAATATATACCCGTGACATGCGCTTAACCCACATATCACGACATCACACACTTTGTGCTAACCTATAAGAACAATGTGTTTTTGTTCTATAATTTAGTATGTGGTGATAAACTATATTAAAATAAACACATCTGATTATCACTTGTTATTAAATTATTTCTGTTTAACTTGTGCTTATGAATTATAGCAAATTTTAGAGTGTGTTTTTTTTATTAAAATATTGTTTTCTAAAATTCTTTCAAAAAATCTGTGCGGCATATGTCTGCTTTGTGGCAAAATCCCTATTCAATTTGTGAATGGCTTTCATGGTTTGTTTGTTGTAGAAGAACATCTACGTAATCCTCATTGTGTATAACTGTTTGAGCTATTATATTCTGTTCCTGCCTGTCAAATTCAATAAAATTGTTAAATGTAGGAGTATTAATTTGCGTACCTATTTGGACTGGTTGTTGTACATCTTGTATAATATTTTGTTGCAGATTTTTAGGCACACGGTAACTCACTGTATTTCTCTTTTTCCATTTCGGTTCTTTAGTCATGCACTTGCTTTTTTGACCAGGTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACAGAAGATAAATGGTGTTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCC-TTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCT</genome_strand>
        <mrna_strand>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG..........................................................................CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCCT-TCTTTTCAACTGGCGTGGACAGGAGATAAATGGTGTTTGTACAT-CTCTTCTCATTG.......................................................TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCNTTACTG-AAGCTTGATTTGAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302316" ref_strand="+" ref_description="SGN-E302316 [cLEW-19-J4]">
      <seq>taattttggacatggaactttgataaaccacctgtgcacgtgtatacagttatttaaataccttacctttatcttcttttattttttactttctgtgcatttcataaggatcttactgtccggcaagtaatagtatgaatcggtcattaactttattctcctgcaggttatttcctttattttttgttgacagttgttgctgcatgtaagggttggattttctggcgcactcctgtggctttgttgtaatgggtagctttcaccagaattcttttccttgctgcatttcttcttctcctttctttctggttaccctgttagtttttctgttaatgttggtagctgctgtactaatatggattgggaggggaaggaaccctattgattcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="100730" stop="104928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101030" g_stop="101285" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101286" i_stop="101359" i_length="74">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101360" g_stop="101411" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="308" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101412" i_stop="102786" i_length="1375">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102787" g_stop="102882" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="404" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102883" i_stop="104117" i_length="1235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104118" g_stop="104182" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="469" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104183" i_stop="104453" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104454" g_stop="104527" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="543" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104528" i_stop="104605" i_length="78">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104606" g_stop="104628" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="566" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E302316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101030" e_stop="101285"/>
          <exon e_start="101360" e_stop="101411"/>
          <exon e_start="102787" e_stop="102882"/>
          <exon e_start="104118" e_stop="104182"/>
          <exon e_start="104454" e_stop="104527"/>
          <exon e_start="104606" e_stop="104628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAGGTATGTGCAAACCCACCCTGTTCTTTTTCAACTGAGGCTATTTTAACTAGGACTAATGAAGAACTATTTTGCAGCTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTGTATCCTTGAACGTGTGAAAGTTATTGCTCTGAATTTAACTATTTGCAAACTAATTAATGAGGGGAACTTTCAGTATGGTGAACTTCCCATTTTTTCTCCAGAGTCATCTTCATTCCAGAAAATAGCAGTACCTGTTAATTTAATCAGTAAGCTGCCAAAAATCAGCAGTTTGCAAGACACTGCTACTGAGCTTTAGAATGTGGTTGACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTATTTGCTAAGTTGCGCAGACTCTTCACTTCCAATGCCCCACCCGTGTCGGATTTCCCAAAAATCCACTACTTTTGGAGAAACCGACATGTACCCGTTGTCATTTTTGAAGTGTCTTAGCAACATAAGTTATTTGATCCTAGTGCTATTCAAAGACTATAGATTCTTCTGCTCTACACCAAAAGTTGTCACTTGTCATGTATCTCTTTTCTTTTAATATCCGATCAGTAGTGCACCATTCAGTACACTCCTTTATACCTTTGTGGGGTAGAGAAGCTGTTTTTAATAGACTCTCGGCTAAAAAAATGGGAAAAACAGTTTTTACAGAACAGGTTTGAAAAATACAAGAGCAAAAAGATCTACAATGGAACTATCAAAGAAAAGAAAAATATTGACAACAAAATATAAAAGATAAGCGAAGTAAAAGAAACAACAGCAGAGCTAAATTTTAAAGAAAAAGGTAATGATACAACAAGAATTATAGTACTGATAAGTAGAAGAAGGAGAAAATAAGGAACTTCTCCACTTGAATACCAGTTATTTTATTTTCAGTGGAATATATACCCGTGACATGCGCTTAACCCACATATCACGACATCACACACTTTGTGCTAACCTATAAGAACAATGTGTTTTTGTTCTATAATTTAGTATGTGGTGATAAACTATATTAAAATAAACACATCTGATTATCACTTGTTATTAAATTATTTCTGTTTAACTTGTGCTTATGAATTATAGCAAATTTTAGAGTGTGTTTTTTTTATTAAAATATTGTTTTCTAAAATTCTTTCAAAAAATCTGTGCGGCATATGTCTGCTTTGTGGCAAAATCCCTATTCAATTTGTGAATGGCTTTCATGGTTTGTTTGTTGTAGAAGAACATCTACGTAATCCTCATTGTGTATAACTGTTTGAGCTATTATATTCTGTTCCTGCCTGTCAAATTCAATAAAATTGTTAAATGTAGGAGTATTAATTTGCGTACCTATTTGGACTGGTTGTTGTACATCTTGTATAATATTTTGTTGCAGATTTTTAGGCACACGGTAACTCACTGTATTTCTCTTTTTCCATTTCGGTTCTTTAGTCATGCACTTGCTTTTTTGACCAGGTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACA</genome_strand>
        <mrna_strand>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG..........................................................................CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCC..............................................................................CTTCTTTTCAACTGGCGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542433" ref_strand="+" ref_description="SGN-E542433 [TUS-63-L21](-)">
      <seq>agttttctgtaaatgttggtagctgctgtactaatatgattgggaggggaaggaaccctatgatttcatctgttctggctcgggactggtattgttcttgaaaatgagcaaagtgagatctgaaagggcatcatcagaaatgtggaaggttgcaggcttggcagttgtttctgttctatgtttcactttaagtgagctgtcgccttattcacagatataccccttcttttcaactggcgtggacaggagataaatggtgtttgtacatctcttctcattgtttgtacatctcttctcatggttttatattattttataggtaccctttaaaacttgtgttccttactgaaagcttgatttgaaattctagacttcagtgggaacttctgctttctgcctgctaattggtgttaccaattgttgaagctacgagattctcctcaagcccaaccccttatacctaggagctactaactgtagttaattagatgaaaaaggctgaacatggtggaaggaaccaatttaataatcagaggttgctctgatgatgttattaagtgcattaatatcgtaaacattttgaggagttgcgagatgtctctctggatcctctttacagaagttgggagctatcgagtaaggacttaacataagagctggattgggacatattagatatttctttagaattcggggcatgactgagaggggactccagttaatttgttcaaccaagaatgcaagtagcgtgtacgtgttttgttggggggagctgatcttacaatgcagttctttcctacaaattagaattttattcacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="102498" stop="105490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102798" g_stop="102882" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102883" i_stop="104117" i_length="1235">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104118" g_stop="104182" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="148" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104183" i_stop="104453" i_length="271">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104454" g_stop="104587" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="280" r_length="132" r_score="0.761"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104588" i_stop="104642" i_length="55">
            <donor d_prob="0.000" d_score="0.44"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104643" g_stop="105194" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="831" r_length="551" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E542433" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102798" e_stop="102882"/>
          <exon e_start="104118" e_stop="104182"/>
          <exon e_start="104454" e_stop="104587"/>
          <exon e_start="104643" e_stop="105194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGGGTATGGACTAAGGCTCTTTGATTACCAATATCTATTTATTTGTTGTTCTTGCATATTCTGTAACCTATCTGATTTAGCAGTTGTTGGTACTTCGCATAGATTACTTTCAGCCTCACATATTCATTTTTAGCTGCAACCAGATTTTATAACACAATCTATTTGATTGTTGTTTTCACATATTCTTTCTTCAATCCATTTGATTTAGGAGTTGTTTGTTCTCTTTATAGATTACTTTGAGCCTCACATTCATTTTTAGCTGCAGTTAGATTTTAATGCACAAACAAGTATATACCTTCGACTTGGAGCCCTAACTGTTTCTTAGTATTTCCTGAGAGGAGCATCTCGTTGAAAGAGAGGGTGTGTTCCCCTGTGAGTAAGGGTAGTTCTTGTAAAATATTTTTCATGCTTAAATGAATACGTATGGTATTTTTAATTTGCTTACAATACTGGTTTTTGGTGTTTAAATTATTGTTGGGAAAATATAAATTTAGACTGTTTCATGGTGGTTTTTTTCTTTGCCACCTCTCCCCACCTTCCTCTTGATAATTGATGAAGTGCAGTTACATGATCCAGATTTATGTAGATCTTTTTGCCTTAGCAGTTCTTTTGCTGGGAGTGTGGCATTTGCATGTTATGGTTAGTATGTTATACACTGGTATTTTTTATACCGCCTCCTCATCAATGTTCACACGTCACAGAGAATTGTTGTCCTGCCATTTTCAGTAATATAATCTTATCTATTGCTACTATGCACCATAAATCTTTACATGGGCACTTCAGTACTTGTGTAATAACTAACGTCTTTTGATCCACCATTTCTTCACAGAATCAGCTGATATAAAAGATTGAGTTATTTTATTTAACAAGGATAGACTTACAAATGTTCAAGAGTTCTCTCTCCCTCTATGTGTGTGTGTGTCCCCAGAGGTGGGTCAGGGGTGTGGAGAAGTGATTTCAAGGAATAGTTTAAACAATAAGATATTCATGGTTGATAGTTTTAGGCGGTGAAACTGCTGCCTCCCCAGAAAGACCAATATTTCATCAGTAATATCGCAGTCGAATGAATTGATTGTTCAACCAATTATCCATTTCTCGTCGAGCTGTGCAAAATTCTAAGTAACAGTTGTCGTAAAGAATTTGCTGTTTAAACTAGGTCTTTTGTGTTCTAATTATTTTATGTGAAGGTTTCCTATTTCAAAATCTATCTTTCTGACCATAATATCTCTGCTATGCAGGACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAGGTACTAACTCATCTTTCCTCGGTGCATCTCTAGCATTTTCTGTATGTCGATTGGAATTGTTATTTGCAGACTGCAGAAAACTTCTGTGGCATGTCATATCATGTCATACTGAGATCTTTTACAATTCTAGTCTTAAGAATTGAGCTTGAATAAAGTGCACTTTTCTTTCTCTTCTTTTCTTCCTTGTTAAAATTCAGCTCTCATGACACAGATTGTGATAGATTATTTTATTGTGAAGTTTGATTTTTTATTATATGTTTGTCCAATGAAGGTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAGATTATGCTTTTAATGCAGCTTCTTTTCAACTGGCGTGGACAGAAGATAAATGGTGTTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGTTGTTACCAATTGTTGAAGCTATGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTACATAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGTGAGATGTCTCTCTGGATCCTTTTTACAGAAGTTGGGAGCTATAGAGTAAGGACTTAACATAAGAGCTAGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAGGGG</genome_strand>
        <mrna_strand>AGTT-TTCTGTAAATGTTGGTAGCTGCTGTACTAATAT-GATTGGGAGGGGAAGGAACCCTATGATTTCATCTGTTCTGGCTCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCATCATCAGAAATGTGGAAG...............................................................................................................................................................................................................................................................................GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCCT-TCTTTTCAACTGGCGTGGACAGGAGATAAATGGTGTTTGTACAT-CTCTTCTCATTG.......................................................TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTGAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGGTGTTACCAATTGTTGAAGCTACGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTA-TTAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGCGAGATGTCTCTCTGGATCCTCTTTACAGAAGTTGGGAGCTATCGAGTAAGGACTTAACATAAGAGCTGGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426636" ref_strand="-" ref_description="SGN-E426636 [STM-46-N2]">
      <seq>gcaagtgtgcaaaatcaggtctcaagggcgagccccatatgatcatcgtgatggaattgtacattgattggtgattttcagctagaaatgagggactgacaatattaaaaatgagagaacttctcagttgagtggttggtattgtggttgagtgatcgaagaaagctcaactcaacggaaaaaataccccatgcaactatgcaaggtggttgctcagggtaaacatgcctgcataacttggattcctgtacatagcaaacattgtgatgaactttttaaattttacagattctttttgttgatatgatgaggttttagatttttcttgccctggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="105082" stop="106517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105382" g_stop="105399" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105400" i_stop="105902" i_length="503">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105903" g_stop="106214" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="327" r_length="309" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="335" polyA_stop="352"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E426636" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426636" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105382" e_stop="105399"/>
          <exon e_start="105903" e_stop="106214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGTGCAAAATCAGGTTACTTGCCTTCTTTTGACTCTATTGCACACCTTGTTTACTGATTGGTTTCTAGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATC-TGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTT</genome_strand>
        <mrna_strand>GCAAGTGTGCAAAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGGGCGAGCCCCATATGATCATCGTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAATGAGGGACTGACAATATTAAAAATGAGAGAACTTCTCAGTTGAGTGGTTGGTATTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAAC-GGAAAA-AATACCCCATGCAACTATGCAAGGT-GGTTGCTCAGGGTAAACATGCCTGCATAACTTGGATTCCTGTACATAGCAAACATTGTGATGAACTTTTTAAATTTTACAGATTC-TTTTTGTTGATATGATGAGGTTTTAGATTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372436" ref_strand="+" ref_description="SGN-E372436 [TUS-32-K10]">
      <seq>agtcatgtgcatcatgatcttggctagggaatatgtagaaaatgcatgttctttcataagggctattcactgatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttctgagcattgtggatgcaggtctcaagggcgagccccatatgatcatctgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggagaataataccccatgtatctaagcaaggtaggttgctcagggtatacatgcctgcataacttggatttctgtatttatcaaacattgcaatgaacttttcaaattttacagattcttttttgttgatattatgaaggtttaaaatttttcttgccttaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="105153" stop="106525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105453" g_stop="106225" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="775" polyA_stop="787"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E372436" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105453" e_stop="106225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATG-AGGTTTTAGATTTTTCTTGCCTAACAAAA</genome_strand>
        <mrna_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAGAATAATACCCCATGTATCTAAGCAAGGTAGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATTTATCAAACATTGCAATGAACTTTTCAAATTTTACAGATTCTTTTTTGTTGATATTATGAAGGTTTAAAATTTTTCTTGCCTTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E294092" ref_strand="+" ref_description="SGN-E294092 [cLET-13-G14]">
      <seq>agtcatgtgcatcatgatcttggctagggaatatgtagaaaatgcatgttctttcataagggctattcactgatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttctgagcattgtggatgcaggtctcaagggcgagccccatatgatcatctgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggaaaataataccccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="105153" stop="106378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105453" g_stop="106078" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E294092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105453" e_stop="106078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATG</genome_strand>
        <mrna_strand>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372435" ref_strand="+" ref_description="SGN-E372435 [TUS-32-K10](-)">
      <seq>gatcaaatgaaatgggaaaaagttgaagacaaagaaaacaaattatttatctcctcgcacattacactagggacgggaaatcatggtaggtgaagctatgtgtgtgagaatcattttagctgtccattaaatttttcgtaagatccacaaactcgccagaattgcagcttagcagttgaaagacaacttatacaaacattgttttttacctttcaccgaacatcaaaacccaaaagagaatatggaaggaagtgcagaatcaatgaagaactcaactttctgcactggaggtctttccactcatttattgattttcattatattacattctttggatttacaaacttgtaccaatgtgttttgagcattgtggatgcaggtctcaagggcgagccccatatgatcatttgatggaattgtacattgatcggtgattttcagctagaaacgagggattgacaatactaaaaatgagacgacttctcagttgagtggttggtgttgtggttgagtgatcgaagaaagctcaactcaacgggaaaataataccccatgtatttaagcaaggtaggttgctcagggtatacatgcctgcataacttggatttctgtatatatcaaacattgcaatgaactttccaaattttacagattcttttttgttgatataatgaggttttagatttttcttgcaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="105224" stop="106525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105524" g_stop="106225" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="703" polyA_stop="713"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E372435" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105524" e_stop="106225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCCTAACAAAA</genome_strand>
        <mrna_strand>GATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAAAACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCTTTGGATTTACAAACTTGTACCAATGTGTTTTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATTTGATGGAATTGTACATTGATCGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACGACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATTTAAGCAAGGTAGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E601438" ref_strand="+" ref_description="SGN-E601438 [54476]">
      <seq>gagaaatctaaaacctcatcatatcaacaaaaagaatctgtaaaatttagaaagttcattgcaatgtttgctatgtacaggaatccaagttatgcaggcatgtttaccctgagcaaccaccttgcatagttgcatggggtattttttccgttgagttgagctttcttcgatcactcaaccacaataccgaccactcaactgagaagttctctcatttttagtattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="106512" stop="105681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106212" g_stop="105981" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E601438" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106212" e_stop="105981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCTAAAACCTCATTATATCAACAAAAAAGAATCTGTAAAATTTGGAAAGTTCATTGCAATGTTTGATATATACAGAAATCCAAGTTATGCAGGCATGTATACCCTGAGCAACCCACCTTGCTTAGATACATGGGGTATTATTTTCCCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAACACCAACCACTCAACTGAGAAGTTGTCTCATTTTTAGTATTGTC</genome_strand>
        <mrna_strand>GAGAAATCTAAAACCTCATCATATCAAC-AAAAAGAATCTGTAAAATTTAGAAAGTTCATTGCAATGTTTGCTATGTACAGGAATCCAAGTTATGCAGGCATGTTTACCCTGAGCAA-CCACCTTGCATAGTTGCATGGGGTATT-TTTT-CCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAATACCGACCACTCAACTGAGAAGTTCTCTCATTTTTAGTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249750" ref_strand="+" ref_description="SGN-E249750 [cLEF-57-I6]">
      <seq>aaattcaaagaaaaagataccatcgaggctgcataaagagaaaaaaaagtaaggggaattaggagaatatcgttttggataccatttcattttcttttttacttcttcaagacttgtttgttgtaagtgttttgggtacatatatatgcatatatatatatatatatatatatatatatatatatatatacaagcttatcatcatattgtgtgtccacgtttttttctctgtattagaggggaaagggggtaagaaggattgaggcagtggatggttttttaaaaggtaaagaaaaagagtgagaagaacatgattgagtggagagaagggacttgttatcctaaggctttaatgggagtgaatgtgggtcttgcttctgtcgatgccgttattgcagttcttgcttttgctcagttaatgagaattcactctcggaatacacacaatggctggactcgtcagaaagtatttcacttgatgattggatcttcaaatttgggttatttcctttattttattttgacaattgttgccgcatgtaagggttggattttctggtcgcactcctgtggctttgtggttatggctttccccaaaattcttttccttgcggcatttcttcttctcctttctttctgggttgatctttgtcatcagtcaaatgatgaagaagatgaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="116379" stop="126617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116679" g_stop="117097" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117098" i_stop="121151" i_length="4054">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121152" g_stop="121202" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="466" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121203" i_stop="123275" i_length="2073">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123276" g_stop="123309" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123310" i_stop="124865" i_length="1556">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124866" g_stop="124952" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="587" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124953" i_stop="125023" i_length="71">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125024" g_stop="125075" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="639" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125076" i_stop="126272" i_length="1197">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="126273" g_stop="126317" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="684" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E249750" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116679" e_stop="117097"/>
          <exon e_start="121152" e_stop="121202"/>
          <exon e_start="123276" e_stop="123309"/>
          <exon e_start="124866" e_stop="124952"/>
          <exon e_start="125024" e_stop="125075"/>
          <exon e_start="126273" e_stop="126317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAA-GGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAGGTACTCTTCTCTCCCCCCTGTTCTTCATTGTTTCAGAGGGTGTTGTTATATATGTGGAGTTTCTGCTAAAAATTCTGTATTGATTATTGGAATTTTTTGTGTTGGGTGTTCGTTTCTTGTTCCCAATTTGGGATTTTGGGAATGCATTCCAATTGGGATTTTTGAAGGGTTTTAATGGATTCTGAATGATAATCTTGTTTGTGATGGGCAATGGAAAGGTGCTGTTTCGGCTAGGTTTGTGATATTGATTGAAAAATTGAGTCCTTTTGCTAAATTTTCTTCCTGTGGCTTATTAGTTTCTGGTTTCTGTGTTGTCAATTCCGTTAATATGCTTGAATTCGAAGGAATGTAAGTTCATTTGTCACAATGGGGTTAAGTTTTTTGCTTTCTAATTTATCATGGGTTTATACAGACGCATTTTCTTGAGACAGTTTTCTGCCATTGTCATGCATAGTTTAATATAATAAGTAGTGTATCTCTTTGACAAGTTCTGCTGAATTTAGTAATTTAAAGTTGCAAAGATTCGATTCGAAGAGACCAAATGTAATCTTGTTCTGAATATGGATTTTCTGAAGCAGAAAGCTTATTTTTCACGGGGACTTTGCCATAGATCACTTGCATAGCGATTTTTACTATGATTTCTCTTCCTCTTCTCTGGGAGGAGTAGGATGCAGTTTTTCTGGGCCAAATTGTGATATGTTTTGTCATATAGGGCTTGCAGCAACATTTAGGGAGTTATCGAGAAGTGATTTTCACTGTTTTGAGGGACTTTACCAGTATTATGGCATTTATGGCCAATATGATTACCCATGGAGATTGCATTAAGTATATGATTATTATCTCCACATTCAATAGATTTTGCTGCATTTGGTGAAAATGGTTAGTTTCATTGTTACAATACCATCTAAGATACTAGCTAAATGTGGAACTTTTGAATCATTGGTATTCGTATACCCGCTCTGCATTTGTGTAGGTGAACATGATTTTTGATGTCCTTGAGAATGGGCTAAAATTGGGATTGTTCTTGAAGCAGACTACTGGGATTCAACCATGTGTTGTTTTTCTGTTAATGCTTATCAAATACCATATTAGTCCTACGCTTGCATATTATTTGATTAAAAATGGAATAAAAAACAATTTTATCTGAAATTATATTGTTAAATGATTCTCGGAGAATCAAGAAGATTGTGGGTACTAATTTTATTCATGACAAAGAGATCTTATATGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGGGTATGCCTTCTGGGTCGAGATCGCCTGGTGCGGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTGTGCGCACCCAAAAGGGTAGTAGCTGCGGGTTTCCCTTGTAGTAAAAAAAAAAAAAGAAGAGAGATCTTATATTTCAATTTTGGACCAGAGATGATACGTGTAAAACTCTTCTTTCTCATTGAGAGTGCAAGATATCATTCCAAAGAATAGTTTGAAAGCTATTCAGAAAGTAGCCAATTTTTTAGAGCTAATGGCTCTTGTTTAAGGCAGGAGAGTACCTTGCTTTTCCTTTTGAGATATCCGGTACTCTAACAGAATTTTGTGATCCTTTTGTTCACTATCCAAATGCAGTTAAAGCAAAAACTTGGTACGTTGGGATAACCTTTAATTGAAAGCTAATATGGTGTAAGCATAACTCAGGGTATGGATCTTTTTTTCCCATCCATGTTGTTGTCAATGCTTCCTGAACTGCAAACCGAATCTCCAAATATCTTCCTTACTCCTCCTCCTTTAGGCATGACCTCTTTGAAGGTTTTTTTTTTCTTTTGATGAAGTAATTAGTTCTATTGCAGGCATCAAGTAGATGCATAATAGTTAGAAAAGCTTAGTAGCAAAAGGTCAGCTCTCCTTTACATTGTTAATTGAGAATCAGGGAGCGGACATGGTTCAGAAATCAGGGCAATCTAGAGGGGATAAATAAACCCAACTATACAAAAACATGAGGCAGTTAGCTTTTAAAGATTGGTAGGTAGTTGATTCCATCAAAGCATCTTCTATTCCTTTCGTTCCAGATACTCCAAAAAATGGCTGCAGGTATCTTTGAAGGTTAACTGACGTACCCCACTTCATATCCCAAGATCATGGTGGATGATGGTTAACTGCAGTGAGGAAGCATTCCCTTTTTCTAATTATTTTTTAAAAAGTCTACTTCTTAAGAAGAAAAAGACATTGCAGACCTGTATCAAAATATTTCATCACTGCTTGGTGCAGCTTTCTGCGACTTAGGTTGCAACTTTCTCCAGTTCTTCTTCTTCAAGCTCCAGCTATGCTGTGTTGCTGCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTACCATGCTGCTATGTTTTTTTTGCTGCTGCTTTCTTTTTTTCTCTTCTCTTGTTTCGGTCTTCTTCAGCTTTTATATTCTTTATTTGTTTCTCTTTTTTTTCTTCTTCAGTATGTTAATTTATTTGGATTTTGTTTATTTGTTGTCTTCTTCTTTTTTTTTCTTTCATGTGTTGCGTGTACTTCTTGTGTCTAATTTTAATTATTTTATTTCCATTTTCTTCTCATATTCATTTTATTCTCTTCTTTTTCAGTAGCTTTTTTTGAATTACAGTTGTTTTTTAATTTTTTGTTCTCTTAACAGCAATTTCAAATGGTATCATCTGAGCAAAATAGAGCCATCAATTTTTTCAATGGCATCATCCATTTATGTTTTGTTTTTTATTTTGCTTGTTCTATCAAGCATTTCTGGCTATCAACTTTCTAGTTTTAAAATTGAAAGATTTGCTTCTATATATTATTTCTGTTGATGTCTTTTTTGATTTAGTTATTTTACTCATATGTGCGAGGTTTATTTTATTTTTGAAATGGTGCTTCACTTCAATGAAGAGAGTGAAGGGAGCTTTTGTTGCTTTTTTGCGCTTCATGCTCTCAAAAACACTGCCTCCCAGCAAACTACTCTATAATTAGTCCAAGGGGAGGGCTAGATTGGTTTTCTTCTACAAGTATAAGTGTCTTCTCCTCATGTATCTTGATTGGTTCAAGATGGAAATCGTTAAGAGTCCCTTGATTATTTGTCCCACTTGAATAAAGAAATTGTTTCTTCGGCTTGGTAACTCTTAAAGGAGGTGTTTGACACATCCCTCGGCAGAAGATGTTACATATGCCTTGTTTTTGCATTGCTCAGTTGCAGCCGATATATGGAAGTATATTCCTGTCCTTTTGTCATTCAATGAGTTATGCCTCATGGTCATAGCATAAAAGCACATACATAAGTGGGGACAATAGAATGTAAGGGAACAATTAAAAAGTTTTGACAGACTGTTCCAGCTTTTATTTTATTTTTTGGTGCCTATGGCTGGAAAGAAATAGCAGAATATGCTTCTCAAGGAGCCTCTTCTCCTATTCATGCTTTGAAGTATGGATGTCTTGGGAACATTTTTTTCTGGAGTAACCATTATATTCTGAATAATTTTGACCAGCTTTTACACTTTGTTAGCTCCTTAGGCGGCATAAAGGAGGATCACTGTTTAATTTAGGTGCTTGCTTAATATGACTAGTTGCTAAGATTGAAAACCAGAGAGGCAGGGGGTGGGGGTTGTGGGAGAGTTTGATGTTGTCAATGAGTTATCAGCATTCAACTACAATCTAGGACCATTGTGAAGATGAGGAATGAATCGAGCAGAGTACTTTTTGACACCAACTGGGTGACTAACTGAAAAAGAGGAAACCTTAATCTAGCTCAATTCTAACCTTGGGATACTGAAGCAATCGAATGGCTGCAAACCAGTTTGGTGCTTCTGTTTAGGTTGCTGCTCGTGCCTTCCGTGGTTGCATAATATTGGTGCAACTCTATTAGAGTATATTCTTGTGCTGTTAATGACACTCACATTTCCAGTGTGGTAGTGATAATTTCTGGTTAAATAGATTGTGCCATCATATTTTTGTGCAACTAAACTTGCTTATCTATTTTTCCAGTTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAAGTAAGTATTTCATCCTCGATTCTCTTGCTGATTTTATTGGTATCTGAGCTGGATGAAAACATTCTGTCCCTCCTACTTTAAATTAAAGTACTTTCCCAAGGTTTAAGTAATTATTGAACAATGTGAAAGCAGGCCAATTTGCTGCCGACACTTTTTGCCTAGTTCCAATTATGAATAGCAAATATACTAATGAAGCATGTTGCTAGATGCTTATATGCGACCGACTTTCCCTTTGATACCGAAAGTTACTGTGATTTGGGTGTTGTTAATTCTCTTTGGGAATTGCACCGAGGGTGTGGCCTAACTGTCAATGAAGATGAAAACCATGGAACATAGAAGAGACAAAGACTCCTAAGTGAGTTCTTCCCATTTGCCTAAGCCTCAGAGGGTAAAGTTACCCTGTATTTGTGTTGGTGTGCGGTAGTCGAAGTGCTCGCAAACTGGTCTAAACACCACAATTACAATAATAGTAGTTTTCTTCGGCAACTAAGACTTAGGTATGCATGTTCATGTGTGTAATCATTTGTATCTTTACATTAACCATAAGTGACAAGGATAAAATCGTGGAGGAGGTGTGCGTATAGGGAGTATAGTTTGAGTAAATGACTGGTTATGTGAGCTCTATTACTGTTGGTACTTGGTATTATTTTATTTTATTTTTGCATACTTATTAGGAACACTTCCCTCATCTGTTTTCCTTCCAGCCAAGCTCCTCACTTATGTTGCCGGTTTACCTATTAAGAGTGTAGAAGAGAGGAGAATGTGAAAAGTCCCAGAACCCATGTTGATGATATTCAACTAAATACTCTTGTCTAAACCATTAGTATTATAATGTTCAAAACGCGTGCCTAGCATTTACGGTTCAGGTGACTTATCATCTCTTTTTAATAATATTAGATAATTCAGGTGACATAACAGTGGTCTTCAGAAGCGAAAATATACTTCAGATTCCTTTACAGTTGTGGTATTAAGTTGCTTCTTTCTCACTATTGCCATAGTAATGAGTAACGATCCTTATCCTCCGTTTCTACAACTTGATAACTATTACCTAAAATTTTCTTTTTTGATAACCATTGCCTAAATTACTGTTCATCATGTAGGTTTTCAAAATTTTAGTATTCATACCAGGTTAGTCTCCAATTTTTTCCATGTGATCTAGTTGTACTCTCTTAATGTATCTCTCTTCCCCTCTCAGTCCTCTGATGAGTACAAATCCAAACTTCAGGATATTAAACCCAGCCTAATTACTTGGCCATTATGGTATTAGTGGTTCATTTATGCTCACATCTAAATTCTTTGGTGTTAGAGATGAGGGGTGTCTATGCTCAGTTCTTGGTGCAAGATCAGTCTATTGATGATTGACCATGGAGGTTTTACGAGTGTGATAATGGTGATATTGAGCTCTGTAACAGTCAGGGTCATAGTAGTGATCGTCTTGTGGAGTTAACCGGTAAATGCTGGCCACTGCTACGTTCTACCATGTTAACTTCCAGCCAAGTGGTACAATGTGTAGTGCAGATTGGGTTGAATATTCTGGTGATGTTACTTCTTCAAAAGAACACAAATGCATCTTTGAATAGCTGAAATTAGTGAATATCGAGGAGTCTTGTTCTGCATGAAATGATCCAAGTATGGTGCAACAAGACGCTTCTTCCACTCATTTGAAGGCACTACCAAAAAACGAGAGTCAGTTTACCTCCTTGTTCTTCTAATACCTGACTGTGAAGTGGCGCATGCTTGATATACCAATTGGAAACGAAACTGGGCTAAACTTGATAATATCTACATAGACTAGCTCCGTGTAATAACAAATAAAAGACTTCATCAACTCTGAGGTAGCACTACATCTCTTGGAGGATATACACATATATTAGAATTTGGAAATATATTGCCTTAATTAGTTTAGTTTACTGCTATGAAGCGACAGTCATCAAGATTTTTCAATGATTCTTCTTCCTTTTGTCCTGGTTAGCCTTAAAAAAAATTCTTTAGTAGATTCAATGAGGCTTCCTTCTTGTTCACTTATGTGCTAATTACAAATCATGCTTACTGGACTTCGCTATGAAATTGCAGGTATTTCACTTGATGATTGGATCTTCAAATTTGGGTAAGCATCTTATTTTCTCTGTTGTATCATCATTCTATCTATGGATTATTTTTCCCTGAGATCTCCCCGGGAGCTCTTATCAAAAGAAAATATTTGCACTCTTACTCATAATATTGAGTTTCTTAAGCCAATTGTTGATGCATATTTTGTTTTGAATGCACATGGGAGAGATTAAATAATGTGAAGCACAAAATGATAAGCAATTTTAAGAGTTAATGCAATGATATGACTTAGATTAATTTGGAAAATATGAAGTTGGGCAAGATTAAGTAATATGTCGCTTTTCTTTATCATTTATGGGAATACAAGCTTCCTGCAAACCTTTCATCCATATGGGGTAACTGAGTTTTTTTTGAGAAAGGTAAAGTTAATTCTATATATCCACATGTATACTACATCAAAGCGTAGTCACAAGGAACAAATATCAAGAATATTTGTTCCTTGTGTAGCTTCTCACTAACATTTGACTCAATGGTGGAAGTGTTGAAAAGCAACATGTTATGCTTTAATTAAACGTAATTAAAATGTGGGTTCTTCTGAAAAATGTGCTGATACGAAGTAAGAAGGATTTTAATCTAGTGCAATCTATAAAAATAGAAGAAAGAAATATGTATCCAGCACCAGAAAACATAATTATGAACAAAAACAACTAACTCAGACAAATGAGTTGGTAGATACACAACTAGATGAGATATTTAGAGGTAAGACGATGTAAATTAAGTTCAAAGATCATGCCAGTTTTCTAATTTAGATGCAAATTTGCTGCTTTAAGTTTCTGCTGCACTGCATTCTAACTTCTATTCCTAATAGTAACAATTCATTTGTTTTGTTCTTTGTAACAAAGTAAGATATTAACATGCAGGCTGCGTTTCAGCCCAGTATTAAAATGAGTTGAACAAAGCGGGTCAAAATGAGCCCGCTTAATAAAATAAGTGGGTTATTAATCTGTCCGAATCTAAACAGGCTGGGTGGGTTATGATTTTGGGCTGATTTTATAGTATCTTGTTTTCAAAGTAAACAAGCTCAGTTATTTACCTCATTGAGTTTGAGATGACGTGTTAAAGTATCATTACTATTATTATCATATTCTTCAATTAGATCACTGGTGTTGTTTCTTTTACTTGGGTTATCTTCACTATTTTTGTTTTCAGTACTACTCTTTTCTACAATATTTTTACAATAGCTTTTACTCTTGTATATGCCAAACCTGTTTTCGAAAATGTTTTTCTTGATCCGAGGGTCTATCAGGAACCTCTCTACAAGGTTGGGGTAAGGTCTGTGTACACCCCAACCTTCCCAGACCCCACTAGGTATGTCATTGTAGAAGATCTAGCTTCTCGTTTGGTAGAAATTAAGGGCACAAAGTGTATAAGCTAATTTGGACATGGAACTTTGATAAACCACCTGTGCTCGTGTATACAATTATCTTTAATACCTTACCTTTATCTTTTATTTTTTGCTTTCTATGCATTTCATAATGATAAAGTAAGTTACTGTCCAGCAAGTGATCTGTTTGAATTTAGTTGCATTTCATAATGAATTTAATTCTCCTGCAGGTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGGGTATGTGCAAACCCGCCGTTCTTTTTCAACTGAGGCTATTTTAACTAAGACTTATGAAAACTATTTTGCAGCTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTGGTAAGTTCGCCTTCTGTTTTCTATATCCTTTAACGAGTGAAAATTATTGTTGTGAATTTAACGATTTACCTTCTTTTTATAATTCTAATTTTGAGGAAAAGAAACTAATTTATGAGGGAAATTCAGTATCATGATCTTCCTATTTTTTCTCAGTCATCTTCATTCCAGAAAATAATCTTGGGGCAGAGAAGCAGTACCTGTTGCTTTAATCAGTAAGCTGACAAAACCAGCAGTTTGCGAGACACCAAATAATGATCCTCTTTTGGTGAATAGCAGTTACTTGCTAAAGTTGCGTGACTTCACTTTCAATGCCACACCCGTGTCGGATTCTCCAAAAATCCACTACTTTTGGAGAATCCGACATGCACCCATTGTCATTTATGAAGAGTCTGAGCAACATAGGTTACTTGAGCCTAGTGCTGTTTGTAGATTATAGATACTTCTGCTCTACACCAACAAAGTTGTCACTTGTCATGTATCTCTTTTTTTTAATATCCGATCAGTGGTGCAACATTCAGTGCTTGGTTGATAATGGGCACACTCCTTTATACTTTCTCCACTTAAACAACAACAACAACAAACCCTGTGTGATCCCACAAGTGGGGTCTGGGAAGGGTGGGGTATACCGTATACGCAGACCTTACCTTACCTTTATGGTGGGGTAAAGTTGTTTTCGATAGACTCTCGGCTCAAAAATGGGAAAGAGTGTTTTACAAAACAGGTTTGAAAAATACAAGAGTAGGAGAACTATGATGCAACTATCAAAGAAAAGAAAAATATCGACAACAAAATAGAAAAGATAAGCAAAGTAAAAGAAATAACAGTAGTTCTAAATCTTAAAGAAAAAGGTAACGATACAACAAGAATTATAGTACTGATAAGTATAAGAAGGAGAAAATAATGAACTTCTCCACTTACATACCAGTTCTTTATTTGCAGTGGAATATATACCCGTGACATGCGCCTGACCCACATATCATGACATCACACACTATGTTCTCACCTTTAGACCAAAACCTTGGTGGCCAAAGTTGTCGTGCGTCTTATATCCTTTTGCACTTGAATCTACAAAAATATTACTATACAAGAACCTCTGAAATAAAAGAAAATGTGCAGGGGTCCAAGCCATGAACTCTATCTTCATGTAGAAATTAAATATTGATGAAGTCTAAAATCCTTTTCTGTAAATGAATTTAGGGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</genome_strand>
        <mrna_strand>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAATATCGTTTTGGATACCATTTCATTTTCTTTTTTACTT-CTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATGC--ATAT--ATATATATATATATATATATATATATATATATATATACAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGGGTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCACTTGATGATTGGATCTTCAAATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAAGGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTGGTTATGG.......................................................................CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227564" ref_strand="+" ref_description="SGN-E227564 [cLEL-30-K20](-)">
      <seq>tcagcatttgtgctatgggtgatgagagaactaccacctccacttgtcactttcagtcaacaggagtcgaggacaatagcttttataaatgacagttcagcgacagtacagcctcagcgatggacagctgctgcaagtgtgcaaaatcaggtctcaagggcgagccccatatgatcaccgtgatggaatttgtaaattgattggtgattttcagctagagtgaaggactgacaatactaaaaatgaaagaacttctcagttgagtggtcggtgttgtggttgagtgatcgaagaaagctcaactcaacggataaaaaataccccttgcaactaaggtggttgctcagggtacacatgcctgcataacttggattcttgtacatagcaatgaactttctaaattttacagattctttttcgttgatataatgaggttttagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="129368" stop="130878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129668" g_stop="129817" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129818" i_stop="130283" i_length="466">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130284" g_stop="130577" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="440" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="459"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E227564" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129668" e_stop="129817"/>
          <exon e_start="130284" e_stop="130577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAGGTTTCTTGCCTTCTTTTAACTCTAATGCACACCTTGTTTGTTGATTTGTCTCTAGTCGTGTGCATCATGATCTTGAGTAGGGAACACGTAGAAAATGCATGTTCATTTACAAGGGCTATAAGCCTATCACTGATTAAATGAAATGGAAAAAAGTTCAAGACGAAGCAAATAAATTATTTATCTCCTGGCACATTACACTAGGGATGGGGAAATCATGGTAAGTGAAGCTATGGCTACAAATCATTTTAGCTGTCCATTAAATTTTTCGTTAAGATCCACCAACTCACCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAGCATTATTTTTAACCTCACATCAAAACCCAAAAGAGAATGTGAAAGTAGAGTGCAAAATCAATGAAGAACTCTTTTCATTATCTTACACTAGATGGATTCACAAACTTGTACCAATGTGTTCTAAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAACTAAGTAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAG</genome_strand>
        <mrna_strand>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAAC----TAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTCGTTGATATAATGAGGTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354127" ref_strand="+" ref_description="SGN-E354127 [cTOS-16-B18]">
      <seq>cctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactgaagatggcaactggtgggttgctttactacttggttcgaggtggaagacaggacgcaagagctgttaaatatattcggttaatgtatttctctaactccaaagggtgcacggttttgcataatttgctcttgaagtgccactgctaatgcattagctcgaaggcttctttttctattttactttgtcgttgttcttctttcaaaagagtcgtttggactaatgggatttggcagtcacttctcgtataaacttgagcctttgtagtcagtgttaccgctgggaagttacatgtacctggtctctaaggtgcaggcaagctttgccaaaacacagcactacattttaattctcatttttctgatagttacatgttcctttaaataatacagtagtaaattttttaattttaattaactgatgtatatatccaaaagctaggagttaagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="132538" stop="130568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132238" g_stop="132183" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132182" i_stop="131376" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131375" g_stop="130868" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="564" r_length="508" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="575"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E354127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132238" e_stop="132183"/>
          <exon e_start="131375" e_stop="130868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</genome_strand>
        <mrna_strand>CCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTGGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAACTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703433" ref_strand="+" ref_description="SGN-E703433 [FA21BH11]">
      <seq>gttcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcgagtagaggtctgggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggggataacaaattcaataccaacgattcgaggaactttggacctgtaccttatggacttgtacagggcagagtcttttggcttgtatggcctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactgaagatggcaactggtgggttgctttactactttgttcgaggtggaagacaggacgcaagagctgttaaatatattcggttaatgtatttctctagctccaaagggtgcacgggtttgcataattttgctctgaagtgccactgctaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134178" stop="130867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133878" g_stop="133592" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133253" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="512" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133252" i_stop="133079" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133078" g_stop="132968" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="623" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132967" i_stop="132245" i_length="723">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132244" g_stop="132183" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="685" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132182" i_stop="131376" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131375" g_stop="131167" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="894" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E703433" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133878" e_stop="133592"/>
          <exon e_start="133477" e_stop="133253"/>
          <exon e_start="133078" e_stop="132968"/>
          <exon e_start="132244" e_stop="132183"/>
          <exon e_start="131375" e_stop="131167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTTGTCAGTAATTCTTCTCTATTTTAATTTTTAGCTAATTTGCCAAACTGTTAGGACTTTATTATATTTTGGAAATATTTTTTGCTTAATTTCGTGGAACTGTTTTCGAAGGTATGTTTAACGCCATCATATTGCTGTCCTTATGCATGCCATTTGATGATTATGTTTAAGACAATTTTTAATTTTTTTAAGTTTGAATTGGTAAGTCAGATTTTTATCTTTGTATTGTTTGATAAGATTAAAAGAATAGCTAAGTCTCCTGTAGGACTTGCCAGAAGGAACACCTGCCATAGGAATCATGTCTAGCTTGTGCATAAGCAGCATTTTCAGGGGATTCTATTGTGCTAAATAGTGTGTGCGCTGATTTTATTGGTACTGTTTGGTACAATTTGGTTAGTTAGGGGCTTAAGGCTAAAATCTCTACATATATGCATAAGCACACCTAATCTTGTGAACGTGTTTAATACTTCAGGTTCTTGTAGACTAGTTGATACTTGTGAAATTCATCCAATATGTTTTATGTTTCTGACTTGAATTCATAAACCAACAGATATGTCGCTAGCTATTTCTGGAGAGTCATCTTCAATTAGTAAACTAGGAACGTTGTAAAACAAAATGTGTAACCTTTTTGATCTTTTTTCCGTATTTGAAGTACTTGTTTGTGCAGCATTCTATCTTTAATTTTGCTGCGTTGTAGAAATCTTAAAGTTCTGATGTTGTCATTAGGTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAA-TTTGCTCTTGAAGTGCCACTGCTAATGCA</genome_strand>
        <mrna_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGGTTTGCATAATTTTGCTC-TGAAGTGCCACTGCTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201235" ref_strand="+" ref_description="SGN-E201235 [cLEC-10-G14]">
      <seq>accttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggggataacaaattcaataccaacgattcgaggaactttggacctgtaccttatggacttgtacagggcagagtcttttggcttgtatggcctcctgaaaattttggatcagtaggaagagaagtacagtaaatcaacctttcaagatttggagtatgcttgtagagtattctctcacaagcctggattttaaacaatttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="133786" stop="131018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133603" g_stop="133592" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133253" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="237" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133252" i_stop="133079" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133078" g_stop="132968" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="348" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132967" i_stop="132245" i_length="723">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132244" g_stop="132183" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="410" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132182" i_stop="131376" i_length="807">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131375" g_stop="131318" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="468" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E201235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133603" e_stop="133592"/>
          <exon e_start="133477" e_stop="133253"/>
          <exon e_start="133078" e_stop="132968"/>
          <exon e_start="132244" e_stop="132183"/>
          <exon e_start="131375" e_stop="131318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTTGTCAGTAATTCTTCTCTATTTTAATTTTTAGCTAATTTGCCAAACTGTTAGGACTTTATTATATTTTGGAAATATTTTTTGCTTAATTTCGTGGAACTGTTTTCGAAGGTATGTTTAACGCCATCATATTGCTGTCCTTATGCATGCCATTTGATGATTATGTTTAAGACAATTTTTAATTTTTTTAAGTTTGAATTGGTAAGTCAGATTTTTATCTTTGTATTGTTTGATAAGATTAAAAGAATAGCTAAGTCTCCTGTAGGACTTGCCAGAAGGAACACCTGCCATAGGAATCATGTCTAGCTTGTGCATAAGCAGCATTTTCAGGGGATTCTATTGTGCTAAATAGTGTGTGCGCTGATTTTATTGGTACTGTTTGGTACAATTTGGTTAGTTAGGGGCTTAAGGCTAAAATCTCTACATATATGCATAAGCACACCTAATCTTGTGAACGTGTTTAATACTTCAGGTTCTTGTAGACTAGTTGATACTTGTGAAATTCATCCAATATGTTTTATGTTTCTGACTTGAATTCATAAACCAACAGATATGTCGCTAGCTATTTCTGGAGAGTCATCTTCAATTAGTAAACTAGGAACGTTGTAAAACAAAATGTGTAACCTTTTTGATCTTTTTTCCGTATTTGAAGTACTTGTTTGTGCAGCATTCTATCTTTAATTTTGCTGCGTTGTAGAAATCTTAAAGTTCTGATGTTGTCATTAGGTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAGGTATGCTTGTTTAGAATTTCATGCTTAATATGTTTTTGCTAATTAGGAGGTTGGATCATTTGTTATGAACTTGTGCCATTGCTTTGCAATGTTGTCCTCATTTCACTTTGATATTTGCCTTCATTTCGTCACTGATTTGATTCCTGTGTTCTATATTTTTTTCTCTTTATTTTTCCAAATTAGTCTTAGTGAACTATTTATGCTACTGTCAATTTTTTCAAGAACTTATGAGGGAGGAAGTTATGTGAACTTTATATGTGTTAAACTTCAAGTTCTCACTTAATGAGAGGTAGCAAAATGTTTAGGAATCAAATATTGTGTTTAGGTTTCTTCCTAGTGTTTTTCTTTCTAAAAGTTTTCTGTTTTCTCCCCTGGCTAATTCAAATTTCCTCCTAGTGGTTTTCCTTGTAGAAAATTTGCACATTTTCAGACTAAGCTTCTTGTTTGCTTCATGTTTTATCTAGCGTATTACGTCCAAATGCTAGTTGTATATTTTTGGTTGTGACTGGAAAAATGTGTGCTTGGTAATGTATGACAAGACTATGGCTCGTAATAATGTATCCTCTGCATAATATTCTGATTTTTGTCATGTTTAGTTCTATAAGAATAATATAATGCTGGCATGTGATGAATTTAAATGTAGAAACCTGATAGGTGAGAATTTATATAGCTGATCCCAACTTGTATGAGAAGGTATATATGTGTTGTTGCTTCCCACAACAATGACATATGATTTTGTTGGACCTTGTGATAAACCTGTTTTCCTTGTTGGTAGCTAAAACCGGTTAATGGACTTTACCTTGGCAGATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTG</genome_strand>
        <mrna_strand>ACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466586" ref_strand="+" ref_description="SGN-E466586 [cPRO-24-P2]">
      <seq>catcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactattcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgaaaaaatgcaacgtggagatgtggtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcatgctaataatggaatagaacatactattgtggtaccagatggacatgtttggattgaaggnngatacaaattttataccaacgattcgaggaactttggacctgtaccttatggacttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134168" stop="132688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133868" g_stop="133592" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133253" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="501" r_length="225" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133252" i_stop="133079" i_length="174">
            <donor d_prob="0.845" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133078" g_stop="132988" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="592" r_length="91" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E466586" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133868" e_stop="133592"/>
          <exon e_start="133477" e_stop="133253"/>
          <exon e_start="133078" e_stop="132988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTAC</genome_strand>
        <mrna_strand>CATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTATTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAAAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCATGCTAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGAAGGNNGATACAAATTTTATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206469" ref_strand="+" ref_description="SGN-E206469 [cLEC-23-K10]">
      <seq>tcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgtgggccgtccagtagaggtcggggatactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgataacccgagaaaaattgtgatcaaaagaatcatgggcatgggtagtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggtaccagatggacatgtttggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134176" stop="132753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133876" g_stop="133592" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133253" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="510" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133252" i_stop="133079" i_length="174">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133078" g_stop="133053" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E206469" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133876" e_stop="133592"/>
          <exon e_start="133477" e_stop="133253"/>
          <exon e_start="133078" e_stop="133053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGTAATTCAGAATTGATCAAATACCTTCATTTACAACTGATTTTCTCCTCTTTTGCAGTTGGTAAATGTTTGTAGTTTACTTTCAGGAGCTAATGTAGTTGGGTTTTTGCTGCCCTATTTTCTTTGCGCCGCTCCACTTTTGTTTCTTAGGTGAATATGCTTTGAATGTGAACAGGTACCAGATGGACATGTTTGGATTGA</genome_strand>
        <mrna_strand>TCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTGGGCCGTCCAGTAGAGGTCGGGGATACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGATAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG..............................................................................................................................................................................GTACCAGATGGACATGTTTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441061" ref_strand="+" ref_description="SGN-E441061 [cSTA-29-E23]">
      <seq>gttcgctgtgcatcaatcggagaatgcaccaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtcaccaacagctaccatctgcaccttcgctctcactcaaggtccaagcctgccttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtggtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcatgcaaataatggaatagaacatactattgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134178" stop="132951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133878" g_stop="133592" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133251" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="516" r_length="228" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E441061" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133878" e_stop="133592"/>
          <exon e_start="133477" e_stop="133251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCA-CAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTA-TATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATG-CTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</genome_strand>
        <mrna_strand>GTTCGCTGTGCATCAATCGGAGAATGCACCAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACCATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCCTGCCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608616" ref_strand="+" ref_description="SGN-E608616 [24607]">
      <seq>aactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactattcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgaaaaaatgcaacgtggagatgtggtgctagtgcgtaagcctgagaacccgagaaaaattgtgatcaaaagactcatgggtatgggtggtgatactgttagatatgttgtggatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134204" stop="132983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133904" g_stop="133592" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133283" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="507" r_length="195" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E608616" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133904" e_stop="133592"/>
          <exon e_start="133477" e_stop="133283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCAT</genome_strand>
        <mrna_strand>AACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTATTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAAAAAATGCAACGTGGAGATGTGGTGCTAGTGCGTAAGCCTGAGAACCCGAGAAAAATTGTGATCAAAAGACTCATGGGTATGGGTGGTGATACTGTTAGATATGTTGTGGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249377" ref_strand="+" ref_description="SGN-E249377 [cLEF-50-B1]">
      <seq>caactttctctacaccggagaatgcacaattagaccaccaaattccgggctgtgttcgctgtgcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcgagtagaggtcggggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgtagtgctagtgcgtagccctgagaacccgagaaaaattgtgatcaaaagaatcatgggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134231" stop="133017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133931" g_stop="133592" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133317" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="501" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E249377" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133931" e_stop="133592"/>
          <exon e_start="133477" e_stop="133317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCAT</genome_strand>
        <mrna_strand>CAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469502" ref_strand="+" ref_description="SGN-E469502 [cSTB-12-A11]">
      <seq>gttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtcaccaacagctacatctgcaccttcgctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgcaacgtggagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134178" stop="133077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133878" g_stop="133592" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133377" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="387" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E469502" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133878" e_stop="133592"/>
          <exon e_start="133477" e_stop="133377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGT</genome_strand>
        <mrna_strand>GTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTCACCAACAGCTACATCTGCACCTTCGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355949" ref_strand="+" ref_description="SGN-E355949 [cLHT-21-N1]">
      <seq>tcaaacttaagggactactatagaaaatatttttctcaactttctctacgccggagaatgcacaattagaccaccaaattccgggctgtgttcgctgtgcgtcaattggagattgcacaattaaattgcgggggccgtgttcgccgtggagtagaggtcggggttactgtggtactctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttagctctcactcaaggtccaagcatgcttccaacgtttaatctgactggagatcttgttttggctgaaaggctatcaactcggtttgagaaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134267" stop="133089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133967" g_stop="133592" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133389" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="465" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E355949" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133967" e_stop="133592"/>
          <exon e_start="133477" e_stop="133389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCA</genome_strand>
        <mrna_strand>TCAAACTTAAGGGACTACTATAGAAAATATTTTTCTCAACTTTCTCTACGCCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATTGGAGATTGCACAATTAAATTGCGGGGGCCGTGTTCGCCGTGGAGTAGAGGTCGGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAATCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249378" ref_strand="+" ref_description="SGN-E249378 [cLEF-50-B3]">
      <seq>tacaccggataatgcacaattagaccaccagatttcttggtgagttttctgggcgtcaatcggagattgcacaattaaatagcgggggccgtgttcgccgtcaagtacaggtcagagactacttcatcctctttcgcctgattctgtcatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctgaaaaatctgaagcaattgacgccttttatcaaagaagcatttcagcaaacattactcgtagccaaattcctctgtggtattcatgtggtcaacagctatatctgcaccttaactctcactcaaggtccaagcatgcttccaacgtttagtctgactggagatcttgttttggctgaaaggctatcaactccgtttgagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134221" stop="133094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133921" g_stop="133592" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114">
            <donor d_prob="0.819" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133477" g_stop="133394" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="414" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E249378" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133921" e_stop="133592"/>
          <exon e_start="133477" e_stop="133394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTG-GGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTCGTACGATAGCTTAACCAGTAGTACTATACTGTTTTCTTAGTTTACTACTTCATGCTTTGGACCAATTGCACTGCAATTTTTAAATCTGTATTTTGTTTCATATATTTTGGGCAGACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAA</genome_strand>
        <mrna_strand>TACACCGGATAATGCACAATTAGACCACCAGATTTCTTGGTGAGTTTTCTGGGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCAAGTACAGGTCAGAGACTACT-TCATCCTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAACTCTC..................................................................................................................ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCCGTTTGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478977" ref_strand="+" ref_description="SGN-E478977 [cSTD-7-P20]">
      <seq>tttttctcaactttctctacaccggagaatgcacaactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgttctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgagtctggaaaatctgaagcaactgacgccttttatcaaagaagcatttcagcaaacactactcgtagccaaattcctctgtggtattcatgtgaccaacagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134238" stop="133309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133938" g_stop="133609" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E478977" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133938" e_stop="133609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATA</genome_strand>
        <mrna_strand>TTTTTCTCAACTTTCTCTACACCGGAGAATGCACAACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTTCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGAGTCTGGAAAATCTGAAGCAACTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACACTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGACCAACAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471725" ref_strand="+" ref_description="SGN-E471725 [cSTB-25-C16]">
      <seq>atttttctcaactttctctacaccggcgaatgcacaactagaccaccagattccgggccgtgttcgctgtgcatcaatcggagaatgcacaattaaatcgcgggggccgtgttcgccgtcgagtagaggtcggagttattgtgtgctctttcgcctgattctgtaatccattttaattggtgagatagcctctttagggttgagatgcagattgactaataatgggtctggaaaatctgaagcaactgacgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="134239" stop="133383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133939" g_stop="133683" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E471725" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133939" e_stop="133683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTT</genome_strand>
        <mrna_strand>ATTTTTCTCAACTTTCTCTACACCGGCGAATGCACAACTAGACCACCAGATTCCGGGCCGTGTTCGCTGTGCATCAATCGGAGAATGCACAATTAAATCGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCGGAGTTATTGT-GTGCTCTTTCGCCTGATTCTGTAATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGGAAAATCTGAAGCAACTGACGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="136782" stop="137677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137082" g_stop="137403" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137082" e_stop="137403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="136782" stop="137677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137082" g_stop="137387" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137082" e_stop="137387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGT</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="136783" stop="137829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137083" g_stop="137529" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137083" e_stop="137529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTGG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326698" ref_strand="+" ref_description="SGN-E326698 [cTOC-17-B10]">
      <seq>aaaccacgagcttctgcttcaacatttgcatctgacactcacctcttccctctctagaaaaaaaattcagaaaatctagtgaagaaacaacaaagatctttttttttttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgtgtgattctgtaacccatttcacttgattgcggaatcactttattttctgtcttgtgatatttcttgatactagtctatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattgggattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaacacttttctagtccagtttattggatctttgacttagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="140165" stop="143133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140465" g_stop="140583" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140584" i_stop="141184" i_length="601">
            <donor d_prob="0.588" d_score="0.87"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141185" g_stop="141320" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="258" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141321" i_stop="141730" i_length="410">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141731" g_stop="141904" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="432" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142486" g_stop="142833" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="779" r_length="347" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E326698" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140465" e_stop="140583"/>
          <exon e_start="141185" e_stop="141320"/>
          <exon e_start="141731" e_stop="141904"/>
          <exon e_start="142486" e_stop="142833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATC---TTTTTTTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTA</genome_strand>
        <mrna_strand>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGGATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGG-AAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245364" ref_strand="+" ref_description="SGN-E245364 [cLEF-53-B12]">
      <seq>ttgcatctgacactcacctcttccctctctagaaaaaaaaggcagaaaatctagtgaggaaacaacaaagatctttttttttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgtgtgattctgtaacccatttcacttgattgcggaatcactttattttctgtcttgtgatatttcttgatactagtctatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="140190" stop="142817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140490" g_stop="140583" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140584" i_stop="141184" i_length="601">
            <donor d_prob="0.588" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141185" g_stop="141320" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="231" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141321" i_stop="141730" i_length="410">
            <donor d_prob="0.802" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141731" g_stop="141904" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="405" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142486" g_stop="142517" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="437" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E245364" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140490" e_stop="140583"/>
          <exon e_start="141185" e_stop="141320"/>
          <exon e_start="141731" e_stop="141904"/>
          <exon e_start="142486" e_stop="142517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTT-TTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGT</genome_strand>
        <mrna_strand>TTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAAGGCAGAAAATCTAGTGAGGAAACAACAAAGATCTTTTTTTTTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTCACTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483993" ref_strand="+" ref_description="SGN-E483993 [cSTE-11-N19]">
      <seq>ctatctgacactcacctcctccctctctagaaaaagtttcagaaaatctagtgaagaaacaacaaagatcttttttttcatttggtggcttggattgaagactataatatactgcactggaccaatcaacatgccgtgggcattttcttctctgagttattgtgtgaagtgtgtgcgctttgtggtattctttcgcgtgattctgtaacccatttttactagattgcaagatctcttttttttcatatttcttgaaactaaagtccatttggaggttgagaatgtacattgcgattaccttgaagagatacagagcagtcaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgaaagctttggggaggttgggattgcttgcttcttgttgctcttattcagcaaagcctgtggaagttggggtttgttggttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttacagttgattggaattgtcagtgcttttttactacaactaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="140192" stop="143013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140492" g_stop="140583" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="140584" i_stop="141184" i_length="601">
            <donor d_prob="0.588" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="141185" g_stop="141320" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="222" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="141321" i_stop="141730" i_length="410">
            <donor d_prob="0.802" d_score="0.92"/>
            <acceptor a_prob="0.941" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="141731" g_stop="141904" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="389" r_length="167" r_score="0.885"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142486" g_stop="142713" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="617" r_length="228" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E483993" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="140492" e_stop="140583"/>
          <exon e_start="141185" e_stop="141320"/>
          <exon e_start="141731" e_stop="141904"/>
          <exon e_start="142486" e_stop="142713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTCATTTGGGTATGTTCAAAGTTCTTTTTTTTTTTTTGGTTTAGATTTGTTGCTTTAGTCTTTGATTTGAGGTTGATTGTGTTGTTTCTTTTTTTGGGATTTTATCTGACTTGATTTGATGATTTGGGTATTTGTGTTCTTGGTTTAATTTTGTATGGTTAGTGAAGAAAGGAGAAAAATAGTATTTTTTTTTGAGGTTTTTAGATTCATTATGGTTTCTTGTATTGAATTGATCTTAGGTTTGTATTGATTCAATGATAGTGTGTGAATTTCATAGAGGGGTGATCTCTTCTACCGAACTTTTTTGCATCTATTGGTGATTTTTTAAGCATTTGTGATTTGCTGGGAATTTGGGTTTCGACAGTTTATTTGTATTAAGGAGTTTTACTGTAAAGAATATTAGTTTCCTTTTGAAGGAAGCATTGTAAGTTGGTGTTTATTTCTATGAGCTTTTATAATATTATGTTTTGCTATTTGTGTGCTTATTGATTATTATTGATATTTAGAGTTATGTTTTGCTATTTGTTTGCTTATTATTGTTAAAGATGAGCTATTTGTGTTCTTATTGATTATTATTGATATTCGGAGTTGTGTTTTGCTATTCTCGCAGTGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCA-TTTTACTTGGTGAGATAGCCTCTTGTATTTCCTAAATCTCTATCTGTCTCTTCAGCCTTAGATTTTATTTGTTTCTATGTAACTATTGCACCTTCGAGATAGAGATAAGGTCTGGGAATGTTGTTGTTGTTGTGGTGTGTAAATATTGCGGATTAACTATTCCTGTTGAGGATTTACTAAAACAGAACAGTAATGCCCAAGAGATTAAAAAAAAACTTATTGCCGAAAAGTATTTAGAAGAAGATAATTTTAGTTGGGTTGACAATAGAGAAATGGAAATTAAAGTTGTATTACTCGAGTGTTATTCAGGTGATGGATCCATTAGTTTTACAGTGGTTCGCTACTCACTTGAGAAATAAGTTTTGCTTGTATTGATGTTCTTTAATGTTTTACTCATTTGTGCTTGTTTGGTATGACAGATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACT--AGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATAC</genome_strand>
        <mrna_strand>CTATCTGACACTCACCTCCTCCCTCTCTAG-AAAAAGTTTCAGAAAATCTAGTGAAGAAACAACAAAGATC------TTTTTTTTCATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGCGTGATTCTGTAACCCATTTTTACTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGC--AA-GA-TCT-CTTT-T-T-TT-TCATATTTCTTGAAACTAAAGTCCATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTCAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTGCTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTGGAAGTTGGGGTTTGTTGGTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACAGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272394" ref_strand="+" ref_description="SGN-E272394 [cLEM-19-G4]">
      <seq>cgattaccttgaagagatacagagcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="141507" stop="143104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141807" g_stop="141904" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142486" g_stop="142804" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="417" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E272394" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141807" e_stop="141904"/>
          <exon e_start="142486" e_stop="142804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAG</genome_strand>
        <mrna_strand>CGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310255" ref_strand="+" ref_description="SGN-E310255 [cTOA-1-K19]">
      <seq>agcagttaaagaagctggtgagattaaaatgcatgtggggagtgttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgtaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="141529" stop="143248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141829" g_stop="141904" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142486" g_stop="142948" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="539" r_length="463" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E310255" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141829" e_stop="141904"/>
          <exon e_start="142486" e_stop="142948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATA</genome_strand>
        <mrna_strand>AGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467509" ref_strand="+" ref_description="SGN-E467509 [cSTB-49-O1]">
      <seq>gttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtagtctgctaaagtgaaagctttggggaggttgggattgcttgcttcttgttgctcttattcagcaaagcctgtggaagttggggtttgttggttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttacagttgattggaattgtcagtgcttttttactacaactaatacaccttgaacgttactctcgtttgtctgtgccttctgtaactcttagctattctcatatttaaaactttccaagtggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggattcaaatcttctgtgccctttcatggtttcgaaattcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="141572" stop="143360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141872" g_stop="141904" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142486" g_stop="143060" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="603" r_length="570" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E467509" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141872" e_stop="141904"/>
          <exon e_start="142486" e_stop="143060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</genome_strand>
        <mrna_strand>GTTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTGCTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTGGAAGTTGGGGTTTGTTGGTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACAGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACGTTACTCTCGTTTGTCTGTGCCTTCTGTAACTCTTAGCTATTCTCATATTTAAAACTTTCCAAGTGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGATTCAAATCTTCTGTGCCCTTTCATGGTTTCGAAATTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354707" ref_strand="+" ref_description="SGN-E354707 [cLHT-5-B22]">
      <seq>ttgcttattaccaattgatgctagtttgtcaggctgagtacttccgtcagttgcttaaacctgtaacgtcatctgctaaagtgaaagctttggggaggttgggattgcttacttcttgttgctcttattcagcaaagcctgttgaagttgggatttgtagcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctacttccattcttaaaacttcccaagtggaaaacactgttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="141573" stop="143182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="141873" g_stop="141904" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142486" g_stop="142882" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="429" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E354707" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="141873" e_stop="141904"/>
          <exon e_start="142486" e_stop="142882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTATTACCAATTGATGCTAGTTTGTCAGGTAAATATTCTTTTAGCTTTTGGTCCTGTCTTTTTGATTAAATTGCACTGAATCCAACCAAACTCGTACAGTCTAAAGGAAATAGAGACAAATCAACTAGAACTTAATTGAATATTGTATGGGAGGATTCTTTTTTGTGTTTCAGTCTTCTGTTTATGTTCTGACTGGTATTTTGTGCCAGGTGCATGATCTTCTACTGACAGTCTTATTAAGACTTGGCTTAAACCACTATGAAAATGTTGAACACTATTCCTCTTTCTATCAATATTGACTTTATCACTGAGGTTGAGTACAGAAAATTGTTTATCCTCAGTGTAGTGTACTGCTATATAGTTTCCATAGGCATCTTGATATCCATACAGATAACCGCGTCTGTATTGAAATATAACTTTTGTATGCCTTCTGTATAATGCTCATCTTACCAAGTGTATGGTGGTTCCGTTCAACCTCAAGACAATGAGAATAGTTGGGATTATTTTCTAGGCATATTGTTTCCTTGTTTTAATATTTTTCTTATCTTGCATTTGTTCTGAATGTATGACAACCCAATGATATGGTTCTTTGGTTCTTGCTTTTTACAGGCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTG</genome_strand>
        <mrna_strand>TTGCTTATTACCAATTGATGCTAGTTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTCATCTGCTAAAGTGAAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCC-TGTTGAAGTTGGGATTTGTAGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTCCATTCTTAAAACTTCCCAAGTGGAAAACACTGTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306863" ref_strand="+" ref_description="SGN-E306863 [cLEY-11-D24]">
      <seq>ttgaagttgggattttttgcttctctttcagtgtatacgaaatcagaatgacctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142296" stop="143432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142596" g_stop="143132" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E306863" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142596" e_stop="143132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTG</genome_strand>
        <mrna_strand>TTGAAGTTGGGATTTTTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369495" ref_strand="+" ref_description="SGN-E369495 [TUS-23-I11]">
      <seq>ctcattaagcactgaatgtggttactgttgattggaattgtcagtgcttttttactacaactaatacaccttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgatataaatgcattgctcagcttggaagaggaagaacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcccctgaatcatactcaaactatcattgtcaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142348" stop="143647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142648" g_stop="143347" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E369495" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142648" e_stop="143347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCA</genome_strand>
        <mrna_strand>CTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608641" ref_strand="+" ref_description="SGN-E608641 [24632]">
      <seq>gtggttacagttgattggaatgtcagtgcttttttacttaacaactaatacaccttgaacgttactctcgtttgtctgtgccttctgtaactcctagctattttcatatttaaaactttccaagtggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggtttcaaatcttctgtgccctttcatggtttcgaaattcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccgaagccagatcatgtaccaccctgccatggcctccaagtttccatatcctgatttgaattataattcaacctgcttccaagacggcatggagagaaaaattgcgaaacaattgagaatacagaagtttcttcatatttggaaggacgattcagatgatataactgcattgctcagcttggaagaggaagaacatgaggaatatgatgaagaaaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142365" stop="143575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142665" g_stop="143275" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E608641" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142665" e_stop="143275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTACTGTTGATTGGAATTGTCAGTGC-TTTTTAC-T-ACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGC-AAACAA-TGAGAATACAGAAGTTTCTTCATATCT-GAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGA</genome_strand>
        <mrna_strand>GTGGTTACAGTTGATTGGAA-TGTCAGTGCTTTTTTACTTAACAACTAATACACCTTGAACGTTACTCTCGTTTGTCTGTGCCTTCTGTAACTCCTAGCTATTTTCATATTTAAAACTTTCCAAGTGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGTTTCAAATCTTCTGTGCCCTTTCATGGTTTCGAAATTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGAAGCCAGATCATGTACCACCCTGCCATGGCCTCCAAGTTTCCATATCCTGATTTGAATTATAATTCAACCTGCTTCCAAGACGGCATGGAGAGAAAAATTGCGAAACAATTGAGAATACAGAAGTTTCTTCATATTTGGAAGGACGATTCAGATGATATAACTGCATTGCTCAGCTTGGAAGAGGAAGAACATGAGGAATATGATGAAGAA-AGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549907" ref_strand="+" ref_description="SGN-E549907 [TUS-6-H17]">
      <seq>accttgaacattactctcttttgcctgtgcctttcgtaactcttagctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgagtataatgcattgctcagcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142414" stop="143536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142714" g_stop="143237" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E549907" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142714" e_stop="143237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGA</genome_strand>
        <mrna_strand>ACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGAGTATAATGCATTGCTCAGCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470923" ref_strand="+" ref_description="SGN-E470923 [cSTB-21-E10]">
      <seq>ctcttagctatttcatatttaaaactttccaagaggaaaacacatttctagtccagtttattggttcttttgacttagttactcatgcagaataactatcaattttcccctcaaaagccttttgtctctctggaagacaatgcagctggtggtaatatattcgatattcctgctccatcagtctttggtacaatggcactccctactggtttcaaatcttctgtgccctttcatggtttcgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgatgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142453" stop="143360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142753" g_stop="143060" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E470923" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142753" e_stop="143060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATC-TTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCG</genome_strand>
        <mrna_strand>CTCTTAGCTA-TTTCATATTTAAAACTTTCCAAGAGGAAAACACATTTCTAGTCCAGTTTATTGGTTCTTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTT-CCC-C----TCAAAAGCCTTTTGTCTCTCTGGAAGACAATGCAGCTGGTGGTAATATATTCGATATTCCTGCTCCATCAGTCTTTGGTACAATGGCACTCCCTACTGGTTTCAAATCTTCTGTGCCCTTTCATGGTTTCGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347686" ref_strand="+" ref_description="SGN-E347686 [cTOF-26-C5]">
      <seq>ctactttcatttttaaaacatcccaagtggaaaacacttttctagtccagtttattggatctttgacttagttactcatgcagaataactatcaattttcccctcaaattcaaaagccttttgtctctctggaagaccaagcagctggtggtaatatatttgatattcctgttccatccgtctttgatacaatggcacttcctactagtttcaaatcttctgtgccctttcatggttttgaatttcagtcctctgaggcatgtccaaagaatttcatcatctttgatcagactgattaccggagccagatcatgtaccaccctgccatgacctccaaattcccatatcctgatctgaattataattcaacttgcttccacgactgcatggagagaaaaattgcaaacaatgagaatacagaagtttcttcatatctgaaggaagattcagatgatataaatgcattgctcagcttgggagaggaagaacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcnccctgaatcatactcaaactatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142460" stop="143638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142760" g_stop="143338" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E347686" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142760" e_stop="143338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTC-CCCTGAATCATACTCAAACTATCATT</genome_strand>
        <mrna_strand>CTACTTTCATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCAGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGGAGAGGAAGAACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCNCCCTGAATCATACTCAAACTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369494" ref_strand="+" ref_description="SGN-E369494 [TUS-23-I11](-)">
      <seq>aacgtgaggaatgtgatgaagaagaggtgagcactgcacgcactgatgcaaactatggatgcagttcccctgaatcatactcaaactatcattgtcaatccaaaaagagcaggacctcttctttcagggaatcctctggtagcagtactagcaattgcagtgagagaaaacgcaggaaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccagcaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcctgatatcctttgtggtataggtaatttcgcttcctttatcaccgtcacatgattatgaaccctagtcatatcttttgcttatgtgaagaagaactacttataccgtcgtattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccagcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatatagtatgtttccactagttgcaaactctattaaggcatttgaataatttctccaatatgtgacactctttcacctattggagctgctatttgttattgttgttgtatgactttgatgatttgttttaatggataatgggttgatgattacactttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142946" stop="144260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143246" g_stop="143959" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="724"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E369494" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143246" e_stop="143959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</genome_strand>
        <mrna_strand>AACGTGAGGAATGTGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585434" ref_strand="+" ref_description="SGN-E585434 [67894]">
      <seq>gtgtgagcactgcacgcaccgatgcaaactatggatgcagttcccctgaatcatactcaaactatgattgtcaatccaaaaagagcagaacctcttctttcaggaaatcctctggcagtagtactagcaattgcagtgagagaaaacgccggaaacttaagaagatggtcaaggtattaaagggaatcatccctggtgctagcaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatttcctttgtggtatgggtaactttgcttcctttatcaccatctcagtcgaagtgattatgaaccgtagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccggcgataggacaataagtttgctgtagctagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgccaactctattaaggtatttgaataatttctccaatatgtgaaactttcacctattggagctgctatttgttattgttgttctatgactttgatgatttgtttaatggataatgggttgatgattacactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="142972" stop="144260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143270" g_stop="143959" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="701"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E585434" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143270" e_stop="143959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAG-TAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTT</genome_strand>
        <mrna_strand>GTGTGAGCACTGCACGCACCGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATGATTGTCAATCCAAAAAGAGCAGAACCTCTTCTTTCAGGAAATCCTCTGGCAGTAGTACTAGCAATTGCAGTGAGAGAAAACGCCGGAAACTTAAGAAGATGGTCAAGGTATTAAAGGGAATCATCCCTGGTGCTAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATTTCCTTTGTGGTATGGGTAACTTTGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCGTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCGGCGATAGGACAATAAGTTTGCTGTAGCTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCCAACTCTATTAAGGTATTTGAATAATTTCTCCAATATGTGA-A-ACTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTCTATGACTTTGATGATTTG-TTTAATGGATAATGGGTTGATGATTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246215" ref_strand="+" ref_description="SGN-E246215 [cLEF-40-A23]">
      <seq>ttttttttttaaagtgtaatcatcaacccattatccattaaaacaaatcatcaaagtcatacaacaacaataacaaatagcagctccaataggtgaaagagtgtcacatattggagaaattattcaaatgccttaatagagtttgcaactagtggaaacatactatatgctagaatgagaaattagatatagcagctagctactacagcagacttattgtcctatcgctggacaaaggaccatattctacgttacgttaccccctccagagcagcaactcagcaatacgacggtataagtagttcttcttcacataagcaaaagatatgactagggttcataatcatgtgacggtgataaaggaagcgaaattacctataccacaaaggatatcaggcatatgtcttcagattatcgactccaagcttctgcacttccaccttaagtgacttgaggtatctgacagcttcatcaagaacggtgacagtattcatcctgctggcaccagggacgattccctttaatgccttgaccatcttcttaagtttcctgcgttttctctcactgcaattgctagtactgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="-" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="144260" stop="143084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143969" g_stop="143384" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="-" ref_id="SGN-E246215" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143969" e_stop="143384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCTTGCATAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</genome_strand>
        <mrna_strand>TTTTTTTTTTAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459934" ref_strand="+" ref_description="SGN-E459934 [cPRO-29-M16]">
      <seq>cagtgagagaaaacgccggcaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccaggaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatctcctgtgtggtatgggtaacttcgcttcctttatcaccatctcagtcgaagtgattatgaaccctagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttactgctctggagggggtaacgtaacgtagaatatggtcctttgtctggcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgcaaactctattaaggtatttgaataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143103" stop="144156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143403" g_stop="143856" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E459934" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143403" e_stop="143856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</genome_strand>
        <mrna_strand>CAGTGAGAGAAAACGCCGGCAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGGAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATCTCCTGTGTGGTATGGGTAACTTCGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCCTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTACTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCTGGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCAAACTCTATTAAGGTATTTGAATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459945" ref_strand="+" ref_description="SGN-E459945 [cPRO-29-O16]">
      <seq>cagtgagagaaaacgccggcaacttaagaagatggtcaaggcattaaagggaatcgtccctggtgccaggaggatgaatactgtcaccgttcttgatgaagctgtcagatacctcaagtcacttaaggtggaagtgcagaagcttggagtcgataatctgaagacatatgcttgatctcctgtgtggtatgggtaacttcgcttcctttatcaccatctcagtcgaagtgattatgaaccctagtcatatcttttgcatatgtgaagaacttcttacaccgtattgctgagttactgctctggagggggtaacgtaacgtagaatatggtcctttgtctggcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatataatatgtttccactagttgcaaactctattaaggtatttgaataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143103" stop="144156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143403" g_stop="143856" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E459945" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143403" e_stop="143856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACC--GTCA--C--A-TGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTC</genome_strand>
        <mrna_strand>CAGTGAGAGAAAACGCCGGCAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGGAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCTTGATCTCCTGTGTGGTATGGGTAACTTCGCTTCCTTTATCACCATCTCAGTCGAAGTGATTATGAACCCTAGTCATATCTTTTGCATATGT---GAAGAACTTCTTACA-C--CGTATTGCTGAGTTACTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCTGGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAATATGTTTCCACTAGTTGCAAACTCTATTAAGGTATTTGAATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216303" ref_strand="+" ref_description="SGN-E216303 [cLEL-13-P2](-)">
      <seq>tattgctgagttgctgctctggagggggtaacgtaacgtagaatatggtcctttgtccagcgataggacaataagtctgctgtagtagctagctgctatatctaatttctcattctagcatatagtatgtttcccctagttgcaaactctattaaggcatttgaataatttctccaatatgtgacactctttcacctattggagctgctatttgttattgttgttgtatgactttgatgatttgttttaatggataatgggttgatgattacnctttatgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0122F06-5tugT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0122F06.1" temp_strand="+" temp_description="C02HBa0122F06.1  AC215389.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0122F06 sequenced_by:kribb upload_account_name:korea">
        <position start="143383" stop="144265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143683" g_stop="143965" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="298"/>
      <MATCH_line gen_id="C02HBa0122F06.1" gen_strand="+" ref_id="SGN-E216303" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0122F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143683" e_stop="143965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTTATGCAA</genome_strand>
        <mrna_strand>TATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCCCTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACNCTTTATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>229</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1051" PGL_stop="3684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1051" e_stop="1055"/>
            <exon e_start="1364" e_stop="1528"/>
            <exon e_start="2095" e_stop="2243"/>
            <exon e_start="3242" e_stop="3684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.940" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1051" e_stop="1055" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1056" i_stop="1363" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="1364" e_stop="1528" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="1529" i_stop="2094" i_length="566"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2095" e_stop="2243" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.923">
            <gDNA_intron_boundary i_start="2244" i_stop="3241" i_length="998"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3242" e_stop="3684" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1051" stop="1055"/>
              <exon start="1364" stop="1528"/>
              <exon start="2095" stop="2243"/>
              <exon start="3242" stop="3684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAG : GTGAATTCTCATAGGATATTTGATATTGAAATTCATGGAATATTATTATGGGCTTCAATGGGATTCTTGATGCCAGCTGGAATACTCACAATAAGATTCTCCAATACAGAAGAGTGTAGCACAACAAAACTCAAAATTCTCTTCTATGTTCATGGAACTCTTCAG : GTACTCTCTGTGGTGTTGGCTACTGCTGGAGCTGTGCTATCAATAAAGAGCTTTGAAAATTTGTTCAACAATACTCACCAAAGAATAGGCTTAGCACTTTATATTGCCGTCTATGTCCAATTTTTTATGGGATTTCGAAGGCCTATGAG : GGGAAGTAAAGGAAGAAGTGTGTGGTACTTTTTCCATTGGCTACTTGGAACAACAATATGTTTGGCAGGAATTATCAACACTTACACAGGCTTAAATGCTTACAATCAAAGAACATCAAAGCCAATAAGCCTTTGGACAATAATTTTTACAGCTCAAATATCATTCATGGGATTATTCTATCTTTTCCAAGACAAATGGGAATATATACAAAAGCAAGGGGTCATTCTTAACAACAATGAAACTACAACACCTCAAGTGGAAATAGTTGTTCCTCAAAATGATGAACAAAAGATGATAATGAGAACTGAGTCAGGAAGGAAAAGCAATGCACTTGGTACTTTCTTTTCTAGACATAATGTCCTAAACAAATTATTTCAACAAACTTGAAATGTTTTCATGTTTCTTGTAAATTACTAGTTTCTCGATACGCATGTGTATTTTG</gDNA_template>
            <first_frame> L  R :   *  I  L  I  G  Y  L  I  L  K  F  M  E  Y  Y  Y  G  L  Q  W  D  S  *  C  Q  L  E  Y  S  Q  *  D  S  P  I  Q  K  S  V  A  Q  Q  N  S  K  F  S  S  M  F  M  E  L  F  R :   Y  S  L  W  C  W  L  L  L  E  L  C  Y  Q  *  R  A  L  K  I  C  S  T  I  L  T  K  E  *  A  *  H  F  I  L  P  S  M  S  N  F  L  W  D  F  E  G  L  *   : G  E  V  K  E  E  V  C  G  T  F  S  I  G  Y  L  E  Q  Q  Y  V  W  Q  E  L  S  T  L  T  Q  A  *  M  L  T  I  K  E  H  Q  S  Q  *  A  F  G  Q  *  F  L  Q  L  K  Y  H  S  W  D  Y  S  I  F  S  K  T  N  G  N  I  Y  K  S  K  G  S  F  L  T  T  M  K  L  Q  H  L  K  W  K  *  L  F  L  K  M  M  N  K  R  *  *  *  E  L  S  Q  E  G  K  A  M  H  L  V  L  S  F  L  D  I  M  S  *  T  N  Y  F  N  K  L  E  M  F  S  C  F  L  *  I  T  S  F  S  I  R  M  C  I  L </first_frame>
            <second_frame>  *   : G  E  F  S  *  D  I  *  Y  *  N  S  W  N  I  I  M  G  F  N  G  I  L  D  A  S  W  N  T  H  N  K  I  L  Q  Y  R  R  V  *  H  N  K  T  Q  N  S  L  L  C  S  W  N  S  S   : G  T  L  C  G  V  G  Y  C  W  S  C  A  I  N  K  E  L  *  K  F  V  Q  Q  Y  S  P  K  N  R  L  S  T  L  Y  C  R  L  C  P  I  F  Y  G  I  S  K  A  Y  E  :  G  K  *  R  K  K  C  V  V  L  F  P  L  A  T  W  N  N  N  M  F  G  R  N  Y  Q  H  L  H  R  L  K  C  L  Q  S  K  N  I  K  A  N  K  P  L  D  N  N  F  Y  S  S  N  I  I  H  G  I  I  L  S  F  P  R  Q  M  G  I  Y  T  K  A  R  G  H  S  *  Q  Q  *  N  Y  N  T  S  S  G  N  S  C  S  S  K  *  *  T  K  D  D  N  E  N  *  V  R  K  E  K  Q  C  T  W  Y  F  L  F  *  T  *  C  P  K  Q  I  I  S  T  N  L  K  C  F  H  V  S  C  K  L  L  V  S  R  Y  A  C  V  F   </second_frame>
            <third_frame>   K  :  V  N  S  H  R  I  F  D  I  E  I  H  G  I  L  L  W  A  S  M  G  F  L  M  P  A  G  I  L  T  I  R  F  S  N  T  E  E  C  S  T  T  K  L  K  I  L  F  Y  V  H  G  T  L  Q  :  V  L  S  V  V  L  A  T  A  G  A  V  L  S  I  K  S  F  E  N  L  F  N  N  T  H  Q  R  I  G  L  A  L  Y  I  A  V  Y  V  Q  F  F  M  G  F  R  R  P  M  R :   G  S  K  G  R  S  V  W  Y  F  F  H  W  L  L  G  T  T  I  C  L  A  G  I  I  N  T  Y  T  G  L  N  A  Y  N  Q  R  T  S  K  P  I  S  L  W  T  I  I  F  T  A  Q  I  S  F  M  G  L  F  Y  L  F  Q  D  K  W  E  Y  I  Q  K  Q  G  V  I  L  N  N  N  E  T  T  T  P  Q  V  E  I  V  V  P  Q  N  D  E  Q  K  M  I  M  R  T  E  S  G  R  K  S  N  A  L  G  T  F  F  S  R  H  N  V  L  N  K  L  F  Q  Q  T  *  N  V  F  M  F  L  V  N  Y  *  F  L  D  T  H  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1053" stop="1055"/>
                    <exon start="1364" stop="1528"/>
                    <exon start="2095" stop="2243"/>
                    <exon start="3242" stop="3629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVNSHRIFDIEIHGILLWASMGFLMPAGILTIRFSNTEECSTTKLKILFYVHGTLQVLSVVLATAGAVLSIKSFENLFNNTHQRIGLALYIAVYVQFFMGFRRPMRGSKGRSVWYFFHWLLGTTICLAGIINTYTGLNAYNQRTSKPISLWTIIFTAQISFMGLFYLFQDKWEYIQKQGVILNNNETTTPQVEIVVPQNDEQKMIMRTESGRKSNALGTFFSRHNVLNKLFQQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6682" PGL_stop="11106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6682" e_stop="6807"/>
            <exon e_start="6892" e_stop="7080"/>
            <exon e_start="7584" e_stop="7644"/>
            <exon e_start="8188" e_stop="8389"/>
            <exon e_start="8538" e_stop="8659"/>
            <exon e_start="8764" e_stop="8868"/>
            <exon e_start="10088" e_stop="10351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.865"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="6682" e_stop="6807" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6892" e_stop="7080" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7584" e_stop="7644" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8188" e_stop="8389" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8538" e_stop="8659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8764" e_stop="8868" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="10088" e_stop="10351" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6737" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6737" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6751" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6751" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6752" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6761" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6776" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6776" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7593" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8219" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8659" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419676" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8773" stop="8868"/>
              <exon start="10088" stop="10349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTGTGACTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA : GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG : GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</gDNA_template>
            <first_frame> F  Y  L  P  C  T  L  E  I  P  S  V  T  E  N  L  H  S  N  G  F  F  R  P  P  Y  E  *  P  P  P  P  S  S  S  *  P  *  P  *  P  *  :  G  H  K  S  D  I  M  G  R  S  R  W  E  S  I  P  *  S  *  W  V  G  S  S  L  S  *  T  Y  L  F  T  W  L  L  *  Q  K  G  T  S  T  *  *  Q  E  F  Q  *  K  S  L  Y  Y  W  N  W  W  P  C  W  Y  W  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  T  S  C  G  G  R  F  V  R  H  G  A  *  C  T  S  D  A  G  W  W  P  F  C  F  C  S   : G  E  A  W  G  W  R  R  G  H  S  E  P  Y  L  T  I  L  G  S  C  N  R  Q  *  E  A  L  I  E  N  F  T  *  T  L  W  I  F  W  L  I  Q  C  Y  Y  I  T  F  N  F  P  V  S  G  L  I  *  S  V  Y  *  I  M  L  V  M  Y  K  H  L  V  F  I  S  S  Y  I  *  F  G  L  F  D  Q  S  L  I  </first_frame>
            <second_frame>  F  I  S  P  V  P  L  R  Y  P  L  *  L  R  I  S  T  Q  M  A  S  S  D  H  H  M  N  D  H  H  H  H  H  H  H  D  H  D  H  N  H  E :   D  T  K  A  T  S  W  V  G  A  D  G  K  V  Y  H  S  H  D  G  L  A  P  H  S  H  E  P  I  Y  S  P  G  Y  F  S  R  R  A  P  P  L  N  D  R  N  F  S  E  R  A  F  T  I  G  I  G  G  P  V  G  T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A  P  A  V  G  A  D  L  S  V  M  E  R  D  A  L  Q  M  R  D  G  G  P  F  V  F  A  Q  :  V  K  H  G  V  G  V  E  D  I  V  N  H  I  L  Q  S  W  E  V  A  T  G  N  K  K  R  *  L  K  T  S  L  E  H  C  G  S  F  G  L  S  S  A  I  I  *  H  S  I  S  L  F  L  D  *  Y  N  L  S  T  E  *  C  L  L  C  T  S  T  *  Y  L  *  V  P  I  F  N  L  V  C  L  I  N  H  *  S </second_frame>
            <third_frame>   L  S  P  L  Y  P  *  D  T  L  C  D  *  E  S  P  L  K  W  L  L  Q  T  T  I  *  M  T  T  T  T  I  I  I  M  T  M  T  I  T  M   : R  T  Q  K  R  H  H  G  *  E  Q  M  G  K  Y  T  I  V  M  M  G  W  L  L  T  L  M  N  L  F  I  H  L  A  T  L  A  E  G  H  L  H  L  M  T  G  I  S  V  K  E  P  L  L  L  E  L  V  A  L  L  V  L   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W  H  Q  L  W  G  Q  I  C  P  S  W  S  V  M  H  F  R  C  G  M  V  A  L  L  F  L  L  R :   *  S  M  G  L  A  *  R  T  *  *  T  I  S  Y  N  P  G  K  L  Q  Q  A  I  R  S  A  N  *  K  L  H  L  N  I  V  D  L  L  A  Y  P  V  L  L  Y  N  I  Q  F  P  C  F  W  T  N  I  I  C  L  L  N  N  A  C  Y  V  Q  A  P  S  I  Y  K  F  L  Y  L  I  W  F  V  *  S  I  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6719" stop="6807"/>
                    <exon start="6892" stop="7080"/>
                    <exon start="7584" stop="7644"/>
                    <exon start="8188" stop="8389"/>
                    <exon start="8538" stop="8659"/>
                    <exon start="8764" stop="8868"/>
                    <exon start="10088" stop="10171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRISTQMASSDHHMNDHHHHHHHDHDHNHEDTKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTIGIGGPVGTGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLSVMERDALQMRDGGPFVFAQVKHGVGVEDIVNHILQSWEVATGNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6682" e_stop="6807"/>
            <exon e_start="6892" e_stop="7080"/>
            <exon e_start="7584" e_stop="7644"/>
            <exon e_start="8188" e_stop="8389"/>
            <exon e_start="8538" e_stop="8659"/>
            <exon e_start="8764" e_stop="8868"/>
            <exon e_start="10088" e_stop="10341"/>
            <exon e_start="11058" e_stop="11106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.865"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.633"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.865">
            <gDNA_exon_boundary e_start="6682" e_stop="6807" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6808" i_stop="6891" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6892" e_stop="7080" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7584" e_stop="7644" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8188" e_stop="8389" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8538" e_stop="8659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8764" e_stop="8868" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219"/>
          </intron>
          <exon e_serial="7" e_score="0.961">
            <gDNA_exon_boundary e_start="10088" e_stop="10341" e_length="254"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10342" i_stop="11057" i_length="716"/>
          </intron>
          <exon e_serial="8" e_score="0.633">
            <gDNA_exon_boundary e_start="11058" e_stop="11106" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6682" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6737" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6737" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6751" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6751" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6752" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6761" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6776" stop="6807"/>
              <exon start="6892" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8219" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10341"/>
              <exon start="11058" stop="11106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8659" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419676" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCTCCCCTGTACCCTTGAGATACCCTCTGTGACTGAGAATCTCCACTCAAATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA : GGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG : GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAA : AAAAAGTCCAAATAGATAATCCCAAAAAAAAAATACATGAAATGAAAGA</gDNA_template>
            <first_frame> F  Y  L  P  C  T  L  E  I  P  S  V  T  E  N  L  H  S  N  G  F  F  R  P  P  Y  E  *  P  P  P  P  S  S  S  *  P  *  P  *  P  *  :  G  H  K  S  D  I  M  G  R  S  R  W  E  S  I  P  *  S  *  W  V  G  S  S  L  S  *  T  Y  L  F  T  W  L  L  *  Q  K  G  T  S  T  *  *  Q  E  F  Q  *  K  S  L  Y  Y  W  N  W  W  P  C  W  Y  W  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  T  S  C  G  G  R  F  V  R  H  G  A  *  C  T  S  D  A  G  W  W  P  F  C  F  C  S   : G  E  A  W  G  W  R  R  G  H  S  E  P  Y  L  T  I  L  G  S  C  N  R  Q  *  E  A  L  I  E  N  F  T  *  T  L  W  I  F  W  L  I  Q  C  Y  Y  I  T  F  N  F  P  V  S  G  L  I  *  S  V  Y  *  I  M  L  V  M  Y  K  H  L  V  F  I  S  S  Y  I  *  F  G  L  F  D  Q  :  K  K  S  K  *  I  I  P  K  K  K  Y  M  K  *  K  </first_frame>
            <second_frame>  F  I  S  P  V  P  L  R  Y  P  L  *  L  R  I  S  T  Q  M  A  S  S  D  H  H  M  N  D  H  H  H  H  H  H  H  D  H  D  H  N  H  E :   D  T  K  A  T  S  W  V  G  A  D  G  K  V  Y  H  S  H  D  G  L  A  P  H  S  H  E  P  I  Y  S  P  G  Y  F  S  R  R  A  P  P  L  N  D  R  N  F  S  E  R  A  F  T  I  G  I  G  G  P  V  G  T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A  P  A  V  G  A  D  L  S  V  M  E  R  D  A  L  Q  M  R  D  G  G  P  F  V  F  A  Q  :  V  K  H  G  V  G  V  E  D  I  V  N  H  I  L  Q  S  W  E  V  A  T  G  N  K  K  R  *  L  K  T  S  L  E  H  C  G  S  F  G  L  S  S  A  I  I  *  H  S  I  S  L  F  L  D  *  Y  N  L  S  T  E  *  C  L  L  C  T  S  T  *  Y  L  *  V  P  I  F  N  L  V  C  L  I  K :   K  S  P  N  R  *  S  Q  K  K  N  T  *  N  E  R </second_frame>
            <third_frame>   L  S  P  L  Y  P  *  D  T  L  C  D  *  E  S  P  L  K  W  L  L  Q  T  T  I  *  M  T  T  T  T  I  I  I  M  T  M  T  I  T  M   : R  T  Q  K  R  H  H  G  *  E  Q  M  G  K  Y  T  I  V  M  M  G  W  L  L  T  L  M  N  L  F  I  H  L  A  T  L  A  E  G  H  L  H  L  M  T  G  I  S  V  K  E  P  L  L  L  E  L  V  A  L  L  V  L   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W  H  Q  L  W  G  Q  I  C  P  S  W  S  V  M  H  F  R  C  G  M  V  A  L  L  F  L  L  R :   *  S  M  G  L  A  *  R  T  *  *  T  I  S  Y  N  P  G  K  L  Q  Q  A  I  R  S  A  N  *  K  L  H  L  N  I  V  D  L  L  A  Y  P  V  L  L  Y  N  I  Q  F  P  C  F  W  T  N  I  I  C  L  L  N  N  A  C  Y  V  Q  A  P  S  I  Y  K  F  L  Y  L  I  W  F  V  *  S   : K  K  V  Q  I  D  N  P  K  K  K  I  H  E  M  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6719" stop="6807"/>
                    <exon start="6892" stop="7080"/>
                    <exon start="7584" stop="7644"/>
                    <exon start="8188" stop="8389"/>
                    <exon start="8538" stop="8659"/>
                    <exon start="8764" stop="8868"/>
                    <exon start="10088" stop="10171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRISTQMASSDHHMNDHHHHHHHDHDHNHEDTKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTIGIGGPVGTGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLSVMERDALQMRDGGPFVFAQVKHGVGVEDIVNHILQSWEVATGNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6737" e_stop="6807"/>
            <exon e_start="6882" e_stop="7080"/>
            <exon e_start="7584" e_stop="7644"/>
            <exon e_start="8188" e_stop="8389"/>
            <exon e_start="8538" e_stop="8659"/>
            <exon e_start="8764" e_stop="8868"/>
            <exon e_start="10088" e_stop="10349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.775"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.955"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="0.989"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.990"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.775">
            <gDNA_exon_boundary e_start="6737" e_stop="6807" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6808" i_stop="6881" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="6882" e_stop="7080" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7081" i_stop="7583" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7584" e_stop="7644" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="8188" e_stop="8389" e_length="202"/>
          </exon>
          <intron i_serial="4" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8538" e_stop="8659" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="8764" e_stop="8868" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="10088" e_stop="10349" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6737" stop="6807"/>
              <exon start="6882" stop="7080"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7593" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8219" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8659" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419676" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8773" stop="8868"/>
              <exon start="10088" stop="10349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGCTTCTTCAGACCACCATATGAATGACCACCACCACCATCATCATCATGACCATGACCATAACCATGA : TATGAATCAGGGACACAAAAGCGACATCATGGGTAGGAGCAGATGGGAAAGTATACCATAGTCATGATGGGTTGGCTCCTCACTCTCATGAACCTATTTATTCACCTGGCTACTTTAGCAGAAGGGCACCTCCACTTAATGACAGGAATTTCAGTGAAAGAGCCTTTACTATTGGAATTGGTGGCCCTGTTGGTACTGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG : GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAAT</gDNA_template>
            <first_frame> M  A  S  S  D  H  H  M  N  D  H  H  H  H  H  H  H  D  H  D  H  N  H  D :   M  N  Q  G  H  K  S  D  I  M  G  R  S  R  W  E  S  I  P  *  S  *  W  V  G  S  S  L  S  *  T  Y  L  F  T  W  L  L  *  Q  K  G  T  S  T  *  *  Q  E  F  Q  *  K  S  L  Y  Y  W  N  W  W  P  C  W  Y  W  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  T  S  C  G  G  R  F  V  R  H  G  A  *  C  T  S  D  A  G  W  W  P  F  C  F  C  S   : G  E  A  W  G  W  R  R  G  H  S  E  P  Y  L  T  I  L  G  S  C  N  R  Q  *  E  A  L  I  E  N  F  T  *  T  L  W  I  F  W  L  I  Q  C  Y  Y  I  T  F  N  F  P  V  S  G  L  I  *  S  V  Y  *  I  M  L  V  M  Y  K  H  L  V  F  I  S  S  Y  I  *  F  G  L  F  D  Q  S  L   </first_frame>
            <second_frame>  W  L  L  Q  T  T  I  *  M  T  T  T  T  I  I  I  M  T  M  T  I  T  M   : I  *  I  R  D  T  K  A  T  S  W  V  G  A  D  G  K  V  Y  H  S  H  D  G  L  A  P  H  S  H  E  P  I  Y  S  P  G  Y  F  S  R  R  A  P  P  L  N  D  R  N  F  S  E  R  A  F  T  I  G  I  G  G  P  V  G  T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A  P  A  V  G  A  D  L  S  V  M  E  R  D  A  L  Q  M  R  D  G  G  P  F  V  F  A  Q  :  V  K  H  G  V  G  V  E  D  I  V  N  H  I  L  Q  S  W  E  V  A  T  G  N  K  K  R  *  L  K  T  S  L  E  H  C  G  S  F  G  L  S  S  A  I  I  *  H  S  I  S  L  F  L  D  *  Y  N  L  S  T  E  *  C  L  L  C  T  S  T  *  Y  L  *  V  P  I  F  N  L  V  C  L  I  N  H  *  </second_frame>
            <third_frame>   G  F  F  R  P  P  Y  E  *  P  P  P  P  S  S  S  *  P  *  P  *  P  *  :  Y  E  S  G  T  Q  K  R  H  H  G  *  E  Q  M  G  K  Y  T  I  V  M  M  G  W  L  L  T  L  M  N  L  F  I  H  L  A  T  L  A  E  G  H  L  H  L  M  T  G  I  S  V  K  E  P  L  L  L  E  L  V  A  L  L  V  L   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W  H  Q  L  W  G  Q  I  C  P  S  W  S  V  M  H  F  R  C  G  M  V  A  L  L  F  L  L  R :   *  S  M  G  L  A  *  R  T  *  *  T  I  S  Y  N  P  G  K  L  Q  Q  A  I  R  S  A  N  *  K  L  H  L  N  I  V  D  L  L  A  Y  P  V  L  L  Y  N  I  Q  F  P  C  F  W  T  N  I  I  C  L  L  N  N  A  C  Y  V  Q  A  P  S  I  Y  K  F  L  Y  L  I  W  F  V  *  S  I  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6887" stop="7080"/>
                    <exon start="7584" stop="7644"/>
                    <exon start="8188" stop="8389"/>
                    <exon start="8538" stop="8659"/>
                    <exon start="8764" stop="8868"/>
                    <exon start="10088" stop="10171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDTKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTIGIGGPVGTGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLSVMERDALQMRDGGPFVFAQVKHGVGVEDIVNHILQSWEVATGNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7442" e_stop="7446"/>
            <exon e_start="7584" e_stop="7644"/>
            <exon e_start="8188" e_stop="8389"/>
            <exon e_start="8538" e_stop="8659"/>
            <exon e_start="8764" e_stop="8868"/>
            <exon e_start="10088" e_stop="10351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.856" acc_prob="0.995" e_score="0.800"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.460" acc_prob="0.728" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.990"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="7442" e_stop="7446" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.856" acc_prob="0.995">
            <gDNA_intron_boundary i_start="7447" i_stop="7583" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7584" e_stop="7644" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7645" i_stop="8187" i_length="543"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="8188" e_stop="8389" e_length="202"/>
          </exon>
          <intron i_serial="3" don_prob="0.460" acc_prob="0.728">
            <gDNA_intron_boundary i_start="8390" i_stop="8537" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8538" e_stop="8659" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8660" i_stop="8763" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="8764" e_stop="8868" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8869" i_stop="10087" i_length="1219"/>
          </intron>
          <exon e_serial="6" e_score="0.977">
            <gDNA_exon_boundary e_start="10088" e_stop="10351" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7442" stop="7446"/>
              <exon start="7584" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403322" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7593" stop="7644"/>
              <exon start="8188" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8206" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8219" stop="8389"/>
              <exon start="8538" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8659" stop="8659"/>
              <exon start="8764" stop="8868"/>
              <exon start="10088" stop="10312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419676" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8773" stop="8868"/>
              <exon start="10088" stop="10349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGG : GAAAACAGCTCTAATGCTGGCATTATGTAAAATCTTGAGGGAAAAATACAGTCTTGCAGCA : GTAACAAATGATATATTCACGAAAGAAGATGGAGAGTTCTTAATAAAACATGGTGCATTGCCGGAGGAAAGGATTCGAGCAGTGGAGACAGGAGGATGCCCACATGCTGCTATTAGGGAAGATATAAGCATTAACCTTGGACCTCTTGAGGAGCTTTCTAATTTGTACAAAGCAGATATACTACTCTGTGAATCTGGTGGAG : ACAACCTAGCTGCCAACTTCAGTAGGGAACTTGCTGACTACATAATCTACATAATAGATGTATCTGCGGGTGACAAAATTCCTCGAAAAGGAGGTCCCGGAATTACACAAGCAGATCTCCTT : GTGATAAATAAGACCGACTTGGCACCAGCTGTGGGGGCAGATTTGTCCGTCATGGAGCGTGATGCACTTCAGATGCGGGATGGTGGCCCTTTTGTTTTTGCTCAG : GTGAAGCATGGGGTTGGCGTAGAGGACATAGTGAACCATATCTTACAATCCTGGGAAGTTGCAACAGGCAATAAGAAGCGCTAATTGAAAACTTCACTTGAACATTGTGGATCTTTTGGCTTATCCAGTGCTATTATATAACATTCAATTTCCCTGTTTCTGGACTAATATAATCTGTCTACTGAATAATGCTTGTTATGTACAAGCACCTAGTATTTATAAGTTCCTATATTTAATTTGGTTTGTTTGATCAATCATTAATCA</gDNA_template>
            <first_frame> T  G :   K  T  A  L  M  L  A  L  C  K  I  L  R  E  K  Y  S  L  A  A  :  V  T  N  D  I  F  T  K  E  D  G  E  F  L  I  K  H  G  A  L  P  E  E  R  I  R  A  V  E  T  G  G  C  P  H  A  A  I  R  E  D  I  S  I  N  L  G  P  L  E  E  L  S  N  L  Y  K  A  D  I  L  L  C  E  S  G  G   : D  N  L  A  A  N  F  S  R  E  L  A  D  Y  I  I  Y  I  I  D  V  S  A  G  D  K  I  P  R  K  G  G  P  G  I  T  Q  A  D  L  L  :  V  I  N  K  T  D  L  A  P  A  V  G  A  D  L  S  V  M  E  R  D  A  L  Q  M  R  D  G  G  P  F  V  F  A  Q  :  V  K  H  G  V  G  V  E  D  I  V  N  H  I  L  Q  S  W  E  V  A  T  G  N  K  K  R  *  L  K  T  S  L  E  H  C  G  S  F  G  L  S  S  A  I  I  *  H  S  I  S  L  F  L  D  *  Y  N  L  S  T  E  *  C  L  L  C  T  S  T  *  Y  L  *  V  P  I  F  N  L  V  C  L  I  N  H  *  S </first_frame>
            <second_frame>  Q   : G  K  Q  L  *  C  W  H  Y  V  K  S  *  G  K  N  T  V  L  Q  Q :   *  Q  M  I  Y  S  R  K  K  M  E  S  S  *  *  N  M  V  H  C  R  R  K  G  F  E  Q  W  R  Q  E  D  A  H  M  L  L  L  G  K  I  *  A  L  T  L  D  L  L  R  S  F  L  I  C  T  K  Q  I  Y  Y  S  V  N  L  V  E  :  T  T  *  L  P  T  S  V  G  N  L  L  T  T  *  S  T  *  *  M  Y  L  R  V  T  K  F  L  E  K  E  V  P  E  L  H  K  Q  I  S  L :   *  *  I  R  P  T  W  H  Q  L  W  G  Q  I  C  P  S  W  S  V  M  H  F  R  C  G  M  V  A  L  L  F  L  L  R :   *  S  M  G  L  A  *  R  T  *  *  T  I  S  Y  N  P  G  K  L  Q  Q  A  I  R  S  A  N  *  K  L  H  L  N  I  V  D  L  L  A  Y  P  V  L  L  Y  N  I  Q  F  P  C  F  W  T  N  I  I  C  L  L  N  N  A  C  Y  V  Q  A  P  S  I  Y  K  F  L  Y  L  I  W  F  V  *  S  I  I  N   </second_frame>
            <third_frame>   R  :  E  N  S  S  N  A  G  I  M  *  N  L  E  G  K  I  Q  S  C  S   : S  N  K  *  Y  I  H  E  R  R  W  R  V  L  N  K  T  W  C  I  A  G  G  K  D  S  S  S  G  D  R  R  M  P  T  C  C  Y  *  G  R  Y  K  H  *  P  W  T  S  *  G  A  F  *  F  V  Q  S  R  Y  T  T  L  *  I  W  W  R :   Q  P  S  C  Q  L  Q  *  G  T  C  *  L  H  N  L  H  N  R  C  I  C  G  *  Q  N  S  S  K  R  R  S  R  N  Y  T  S  R  S  P   : C  D  K  *  D  R  L  G  T  S  C  G  G  R  F  V  R  H  G  A  *  C  T  S  D  A  G  W  W  P  F  C  F  C  S   : G  E  A  W  G  W  R  R  G  H  S  E  P  Y  L  T  I  L  G  S  C  N  R  Q  *  E  A  L  I  E  N  F  T  *  T  L  W  I  F  W  L  I  Q  C  Y  Y  I  T  F  N  F  P  V  S  G  L  I  *  S  V  Y  *  I  M  L  V  M  Y  K  H  L  V  F  I  S  S  Y  I  *  F  G  L  F  D  Q  S  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7442" stop="7446"/>
                    <exon start="7584" stop="7644"/>
                    <exon start="8188" stop="8389"/>
                    <exon start="8538" stop="8659"/>
                    <exon start="8764" stop="8868"/>
                    <exon start="10088" stop="10171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGKTALMLALCKILREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGITQADLLVINKTDLAPAVGADLSVMERDALQMRDGGPFVFAQVKHGVGVEDIVNHILQSWEVATGNKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12802" PGL_stop="15206"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12802" e_stop="13238"/>
            <exon e_start="14072" e_stop="14386"/>
            <exon e_start="15042" e_stop="15206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12802" e_stop="13238" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13239" i_stop="14071" i_length="833"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14072" e_stop="14386" e_length="315"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14387" i_stop="15041" i_length="655"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="15042" e_stop="15206" e_length="165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12802" stop="13238"/>
              <exon start="14072" stop="14386"/>
              <exon start="15042" stop="15150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12827" stop="13238"/>
              <exon start="14072" stop="14118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12832" stop="13238"/>
              <exon start="14072" stop="14089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12847" stop="13238"/>
              <exon start="14072" stop="14178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12848" stop="13226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12911" stop="13238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12955" stop="13238"/>
              <exon start="14072" stop="14386"/>
              <exon start="15042" stop="15124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13046" stop="13238"/>
              <exon start="14072" stop="14386"/>
              <exon start="15042" stop="15206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13121" stop="13238"/>
              <exon start="14072" stop="14386"/>
              <exon start="15042" stop="15170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321125" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAATTCTAACCCTAAACCCAAACGACAGTGAGAAGAAGCAAAGGAACAACTCGAACCATCAAAAACCAATAGCAATCAATCAATCAATCAAACCCAAAAAGGTGTGCGTGTGTGGGTGCAGAGCAAGAAATCAATGGCGGAAGGTGGGGAGAAGAAGAGGGTTGTCGTGGAGTCGTTAGGATGGTTAACGGAATCCACCATCATGCCCAAAAAGATCCGACCAATTGAAGGCGTCGGTGCTTCTTCCATCCTTGAGCTTAAAGCCCAATTATACAAATCTCAAGAAGAGGCCAAACGCGTCGCCAAAGAGACCGTCCACCCTTCTGCTGCTGACCCGAATTATTCCCATCTAGAGATCCATCGTGCAAAGAGGAAGATAACTGCCAAGAACGTCTTTTCGTCTAAAAATCATGGGGTTGATGCCAGAGAGGCCAA : GGACAAGCTTGAGATGAAAGCAATCAAGGATGGTTCAGTAAGCTATGCTGCCTTAGAACGAAAGGCTAAGTTATATGATAAGCTGGTGAGGGGTGAGCTTTCTGATGGGGAGGAGGGAGAGAAGTACTGTGTTGACTTCTTTCGGAAGGGCCAGGAGCAGGAAGACTCTGAACAGCTTCAACGGCATGACATTTCTAACACAGAACCAAGAGATGAAGATGGAGATGATGATGCCTCCCTACTATCAGACACAAAAGCTGCAGGACTTGGCCAAGCTGGCACATTTGACCGAAGTGAACACAAGCGTTTCGTTAT : GGAAGTTCATAAAGAAGCAAGTCAAGCAAGGGAAAAAGCATCAGAACTCAAGCTACGTAGGCAAGAACAAGTAGCAGCACGTCGAGAAAAACTAAAGCAGGCTTATCTCCGCAAGCAGATTGAGAAATTGAAGGCTTCCAAGACAGAGCAGACATAGACCAGAGG</gDNA_template>
            <first_frame> L  N  S  N  P  K  P  K  R  Q  *  E  E  A  K  E  Q  L  E  P  S  K  T  N  S  N  Q  S  I  N  Q  T  Q  K  G  V  R  V  W  V  Q  S  K  K  S  M  A  E  G  G  E  K  K  R  V  V  V  E  S  L  G  W  L  T  E  S  T  I  M  P  K  K  I  R  P  I  E  G  V  G  A  S  S  I  L  E  L  K  A  Q  L  Y  K  S  Q  E  E  A  K  R  V  A  K  E  T  V  H  P  S  A  A  D  P  N  Y  S  H  L  E  I  H  R  A  K  R  K  I  T  A  K  N  V  F  S  S  K  N  H  G  V  D  A  R  E  A  K :   D  K  L  E  M  K  A  I  K  D  G  S  V  S  Y  A  A  L  E  R  K  A  K  L  Y  D  K  L  V  R  G  E  L  S  D  G  E  E  G  E  K  Y  C  V  D  F  F  R  K  G  Q  E  Q  E  D  S  E  Q  L  Q  R  H  D  I  S  N  T  E  P  R  D  E  D  G  D  D  D  A  S  L  L  S  D  T  K  A  A  G  L  G  Q  A  G  T  F  D  R  S  E  H  K  R  F  V  M :   E  V  H  K  E  A  S  Q  A  R  E  K  A  S  E  L  K  L  R  R  Q  E  Q  V  A  A  R  R  E  K  L  K  Q  A  Y  L  R  K  Q  I  E  K  L  K  A  S  K  T  E  Q  T  *  T  R   </first_frame>
            <second_frame>  S  I  L  T  L  N  P  N  D  S  E  K  K  Q  R  N  N  S  N  H  Q  K  P  I  A  I  N  Q  S  I  K  P  K  K  V  C  V  C  G  C  R  A  R  N  Q  W  R  K  V  G  R  R  R  G  L  S  W  S  R  *  D  G  *  R  N  P  P  S  C  P  K  R  S  D  Q  L  K  A  S  V  L  L  P  S  L  S  L  K  P  N  Y  T  N  L  K  K  R  P  N  A  S  P  K  R  P  S  T  L  L  L  L  T  R  I  I  P  I  *  R  S  I  V  Q  R  G  R  *  L  P  R  T  S  F  R  L  K  I  M  G  L  M  P  E  R  P   : R  T  S  L  R  *  K  Q  S  R  M  V  Q  *  A  M  L  P  *  N  E  R  L  S  Y  M  I  S  W  *  G  V  S  F  L  M  G  R  R  E  R  S  T  V  L  T  S  F  G  R  A  R  S  R  K  T  L  N  S  F  N  G  M  T  F  L  T  Q  N  Q  E  M  K  M  E  M  M  M  P  P  Y  Y  Q  T  Q  K  L  Q  D  L  A  K  L  A  H  L  T  E  V  N  T  S  V  S  L   : W  K  F  I  K  K  Q  V  K  Q  G  K  K  H  Q  N  S  S  Y  V  G  K  N  K  *  Q  H  V  E  K  N  *  S  R  L  I  S  A  S  R  L  R  N  *  R  L  P  R  Q  S  R  H  R  P  E  </second_frame>
            <third_frame>   Q  F  *  P  *  T  Q  T  T  V  R  R  S  K  G  T  T  R  T  I  K  N  Q  *  Q  S  I  N  Q  S  N  P  K  R  C  A  C  V  G  A  E  Q  E  I  N  G  G  R  W  G  E  E  E  G  C  R  G  V  V  R  M  V  N  G  I  H  H  H  A  Q  K  D  P  T  N  *  R  R  R  C  F  F  H  P  *  A  *  S  P  I  I  Q  I  S  R  R  G  Q  T  R  R  Q  R  D  R  P  P  F  C  C  *  P  E  L  F  P  S  R  D  P  S  C  K  E  E  D  N  C  Q  E  R  L  F  V  *  K  S  W  G  *  C  Q  R  G  Q  :  G  Q  A  *  D  E  S  N  Q  G  W  F  S  K  L  C  C  L  R  T  K  G  *  V  I  *  *  A  G  E  G  *  A  F  *  W  G  G  G  R  E  V  L  C  *  L  L  S  E  G  P  G  A  G  R  L  *  T  A  S  T  A  *  H  F  *  H  R  T  K  R  *  R  W  R  *  *  C  L  P  T  I  R  H  K  S  C  R  T  W  P  S  W  H  I  *  P  K  *  T  Q  A  F  R  Y  :  G  S  S  *  R  S  K  S  S  K  G  K  S  I  R  T  Q  A  T  *  A  R  T  S  S  S  T  S  R  K  T  K  A  G  L  S  P  Q  A  D  *  E  I  E  G  F  Q  D  R  A  D  I  D  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12835" stop="13238"/>
                    <exon start="14072" stop="14386"/>
                    <exon start="15042" stop="15198"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEAKEQLEPSKTNSNQSINQTQKGVRVWVQSKKSMAEGGEKKRVVVESLGWLTESTIMPKKIRPIEGVGASSILELKAQLYKSQEEAKRVAKETVHPSAADPNYSHLEIHRAKRKITAKNVFSSKNHGVDAREAKDKLEMKAIKDGSVSYAALERKAKLYDKLVRGELSDGEEGEKYCVDFFRKGQEQEDSEQLQRHDISNTEPRDEDGDDDASLLSDTKAAGLGQAGTFDRSEHKRFVMEVHKEASQAREKASELKLRRQEQVAARREKLKQAYLRKQIEKLKASKTEQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16184" PGL_stop="17382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16184" e_stop="16386"/>
            <exon e_start="16452" e_stop="17382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="16184" e_stop="16386" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16387" i_stop="16451" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="16452" e_stop="17382" e_length="931"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16184" stop="16386"/>
              <exon start="16452" stop="16738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16280" stop="16386"/>
              <exon start="16452" stop="16893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16282" stop="16386"/>
              <exon start="16452" stop="17006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16537" stop="16809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16851" stop="17382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16851" stop="17268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTTTTTGATGCTGCACTTCATTTTGAACAAACCCGTGAAGGATAGCGAATCCAAGCATCAGCTTTGGCAACTTAAAGACGGGATGCATCTAGCACCTTGAATTTCTGGACTTCCTTAGATGAAACCAAGTCGTTGCTTTATCAAGGAGTAGAGAGCTCAATCGTTATAGCAAATGCTCCTATGTAAACCCTAATTATGACG : TTTTTCGTTATTACACAGTTAAGAGGCTAAATTCAACAGATAATTACACTGTGGATGAGCAAAAGAAGGATAAGTAAGTATTAAAGAATACGACTCCACTGGGGATCGAACCCAGAATCTCTGGTTTCGTAGACCAGCGCCTTATCCATTGGGCCATGGAGTCTTTGTTGCTACATTAGTTTAACTTTTAATTATTAATTGTGCCACATTAATTTAATTCCGTTAATTGGAAGAATTACTGTGTTTAGTATAAATAAGAGTATCATCTATCTAAATCAAACAACTGATATTTTCAAATTAAAATTCTATTGCAACCGGAAACTTCCAGAAGATGAGTCGGTGTAAATATATAAGTTGGACCAAAGAAATTACAGCAGCTAGCATTTCTGCAAAATCACTTCAATTTTAACAATTCTCCGAAATGCCTGAATCTCATTTACGCCGGCGGAGGTCACCACCGGAGGAGCGGCTTAGGGAGATAGAAGTTCTCATATACTCAGCAGAAGGCCTGAAGAACGTGAAGCACTTGACCAGGATGAGAACCTACGCCGAGGTCTACGTGGTGAAAGACGTCCACGTGGCAAAAACCAAAATAGCGGAGCACACCGGCGACGGAGACGACGGGACCAATCCAATATGGAACCAGGTGGTGAAGGTGAAATTTCACGAAAAGCTGCCGGAAAATGACATCATGGCGGCGTTAAACGTGGATATTTACGCTCACGGACACATTCGAGAGAAACCGGTGGGGAGCGCTCGAGTTTTGCTCTCCGATGTGTTGAAGGATACTAAATCGCCGGAATCGGAGATGCTGGAGAATAATCCGATCCAGTTTATGACAGTGTTAGTTTGGAGACCTTCTGGTAGGCCACAAGGTGTGCTCAACCTGTGGGTCCCACCTACAGGGCGGTTCCTGGTTCCGTTGACTTCG</gDNA_template>
            <first_frame> V  F  L  M  L  H  F  I  L  N  K  P  V  K  D  S  E  S  K  H  Q  L  W  Q  L  K  D  G  M  H  L  A  P  *  I  S  G  L  P  *  M  K  P  S  R  C  F  I  K  E  *  R  A  Q  S  L  *  Q  M  L  L  C  K  P  *  L  *  R :   F  S  L  L  H  S  *  E  A  K  F  N  R  *  L  H  C  G  *  A  K  E  G  *  V  S  I  K  E  Y  D  S  T  G  D  R  T  Q  N  L  W  F  R  R  P  A  P  Y  P  L  G  H  G  V  F  V  A  T  L  V  *  L  L  I  I  N  C  A  T  L  I  *  F  R  *  L  E  E  L  L  C  L  V  *  I  R  V  S  S  I  *  I  K  Q  L  I  F  S  N  *  N  S  I  A  T  G  N  F  Q  K  M  S  R  C  K  Y  I  S  W  T  K  E  I  T  A  A  S  I  S  A  K  S  L  Q  F  *  Q  F  S  E  M  P  E  S  H  L  R  R  R  R  S  P  P  E  E  R  L  R  E  I  E  V  L  I  Y  S  A  E  G  L  K  N  V  K  H  L  T  R  M  R  T  Y  A  E  V  Y  V  V  K  D  V  H  V  A  K  T  K  I  A  E  H  T  G  D  G  D  D  G  T  N  P  I  W  N  Q  V  V  K  V  K  F  H  E  K  L  P  E  N  D  I  M  A  A  L  N  V  D  I  Y  A  H  G  H  I  R  E  K  P  V  G  S  A  R  V  L  L  S  D  V  L  K  D  T  K  S  P  E  S  E  M  L  E  N  N  P  I  Q  F  M  T  V  L  V  W  R  P  S  G  R  P  Q  G  V  L  N  L  W  V  P  P  T  G  R  F  L  V  P  L  T  S </first_frame>
            <second_frame>  C  F  *  C  C  T  S  F  *  T  N  P  *  R  I  A  N  P  S  I  S  F  G  N  L  K  T  G  C  I  *  H  L  E  F  L  D  F  L  R  *  N  Q  V  V  A  L  S  R  S  R  E  L  N  R  Y  S  K  C  S  Y  V  N  P  N  Y  D   : V  F  R  Y  Y  T  V  K  R  L  N  S  T  D  N  Y  T  V  D  E  Q  K  K  D  K  *  V  L  K  N  T  T  P  L  G  I  E  P  R  I  S  G  F  V  D  Q  R  L  I  H  W  A  M  E  S  L  L  L  H  *  F  N  F  *  L  L  I  V  P  H  *  F  N  S  V  N  W  K  N  Y  C  V  *  Y  K  *  E  Y  H  L  S  K  S  N  N  *  Y  F  Q  I  K  I  L  L  Q  P  E  T  S  R  R  *  V  G  V  N  I  *  V  G  P  K  K  L  Q  Q  L  A  F  L  Q  N  H  F  N  F  N  N  S  P  K  C  L  N  L  I  Y  A  G  G  G  H  H  R  R  S  G  L  G  R  *  K  F  S  Y  T  Q  Q  K  A  *  R  T  *  S  T  *  P  G  *  E  P  T  P  R  S  T  W  *  K  T  S  T  W  Q  K  P  K  *  R  S  T  P  A  T  E  T  T  G  P  I  Q  Y  G  T  R  W  *  R  *  N  F  T  K  S  C  R  K  M  T  S  W  R  R  *  T  W  I  F  T  L  T  D  T  F  E  R  N  R  W  G  A  L  E  F  C  S  P  M  C  *  R  I  L  N  R  R  N  R  R  C  W  R  I  I  R  S  S  L  *  Q  C  *  F  G  D  L  L  V  G  H  K  V  C  S  T  C  G  S  H  L  Q  G  G  S  W  F  R  *  L   </second_frame>
            <third_frame>   V  F  D  A  A  L  H  F  E  Q  T  R  E  G  *  R  I  Q  A  S  A  L  A  T  *  R  R  D  A  S  S  T  L  N  F  W  T  S  L  D  E  T  K  S  L  L  Y  Q  G  V  E  S  S  I  V  I  A  N  A  P  M  *  T  L  I  M  T  :  F  F  V  I  T  Q  L  R  G  *  I  Q  Q  I  I  T  L  W  M  S  K  R  R  I  S  K  Y  *  R  I  R  L  H  W  G  S  N  P  E  S  L  V  S  *  T  S  A  L  S  I  G  P  W  S  L  C  C  Y  I  S  L  T  F  N  Y  *  L  C  H  I  N  L  I  P  L  I  G  R  I  T  V  F  S  I  N  K  S  I  I  Y  L  N  Q  T  T  D  I  F  K  L  K  F  Y  C  N  R  K  L  P  E  D  E  S  V  *  I  Y  K  L  D  Q  R  N  Y  S  S  *  H  F  C  K  I  T  S  I  L  T  I  L  R  N  A  *  I  S  F  T  P  A  E  V  T  T  G  G  A  A  *  G  D  R  S  S  H  I  L  S  R  R  P  E  E  R  E  A  L  D  Q  D  E  N  L  R  R  G  L  R  G  E  R  R  P  R  G  K  N  Q  N  S  G  A  H  R  R  R  R  R  R  D  Q  S  N  M  E  P  G  G  E  G  E  I  S  R  K  A  A  G  K  *  H  H  G  G  V  K  R  G  Y  L  R  S  R  T  H  S  R  E  T  G  G  E  R  S  S  F  A  L  R  C  V  E  G  Y  *  I  A  G  I  G  D  A  G  E  *  S  D  P  V  Y  D  S  V  S  L  E  T  F  W  *  A  T  R  C  A  Q  P  V  G  P  T  Y  R  A  V  P  G  S  V  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16861" stop="17382"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSEMPESHLRRRRSPPEERLREIEVLIYSAEGLKNVKHLTRMRTYAEVYVVKDVHVAKTKIAEHTGDGDDGTNPIWNQVVKVKFHEKLPENDIMAALNVDIYAHGHIREKPVGSARVLLSDVLKDTKSPESEMLENNPIQFMTVLVWRPSGRPQGVLNLWVPPTGRFLVPLTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19554" PGL_stop="19107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19554" e_stop="19107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="19554" e_stop="19107" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19554" stop="19249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19553" stop="19107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTGTACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGAATGGGAGAGTGGCGAGCGAGACTTCTGGGAGAGAGACGCCTGACAAATTTTTGCCAAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  C  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E  R  R  E  W  E  S  G  E  R  D  F  W  E  R  D  A  *  Q  I  F  A  K  R  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  V  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  G  E  N  G  R  V  A  S  E  T  S  G  R  E  T  P  D  K  F  L  P  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E  A  R  M  G  E  W  R  A  R  L  L  G  E  R  R  L  T  N  F  C  Q  T  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="28867" PGL_stop="29249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28867" e_stop="29249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="28867" e_stop="29249" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28867" stop="29249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCAAGCCTTAGAGCTTCCGTAAGCCTTTTGGCATTACAGAGCGATTCAATGGATGATTTCAGGGGACGGAATTTAGGGATTGGGCTAAGCCAGTTCACTACATTTCTATACGTTCGATTCATCATTCTTTTGCATTTTTCCTTTCTCTTCAGAAAACCCGATACAGCAGATAAACTAAAAATGAAGAAGGAGAAGAGATACAAATAGCCTTCTTTTCAAGTTTTCCGCTACTTATTTCATTAGAGATGAACAGATAAATTTTTCACCAAATTTCAAAAAACAGTTGCTTAACCAATTGAAGAAGTTTGTTGCTTCTGGTAAACTAAGAGCTTCTACAAGCTTCGATCGACTCGGTCTGCAGCTACTAAACCTAATCGCT</gDNA_template>
            <first_frame> K  S  K  P  *  S  F  R  K  P  F  G  I  T  E  R  F  N  G  *  F  Q  G  T  E  F  R  D  W  A  K  P  V  H  Y  I  S  I  R  S  I  H  H  S  F  A  F  F  L  S  L  Q  K  T  R  Y  S  R  *  T  K  N  E  E  G  E  E  I  Q  I  A  F  F  S  S  F  P  L  L  I  S  L  E  M  N  R  *  I  F  H  Q  I  S  K  N  S  C  L  T  N  *  R  S  L  L  L  L  V  N  *  E  L  L  Q  A  S  I  D  S  V  C  S  Y  *  T  *  S   </first_frame>
            <second_frame>  K  A  S  L  R  A  S  V  S  L  L  A  L  Q  S  D  S  M  D  D  F  R  G  R  N  L  G  I  G  L  S  Q  F  T  T  F  L  Y  V  R  F  I  I  L  L  H  F  S  F  L  F  R  K  P  D  T  A  D  K  L  K  M  K  K  E  K  R  Y  K  *  P  S  F  Q  V  F  R  Y  L  F  H  *  R  *  T  D  K  F  F  T  K  F  Q  K  T  V  A  *  P  I  E  E  V  C  C  F  W  *  T  K  S  F  Y  K  L  R  S  T  R  S  A  A  T  K  P  N  R  </second_frame>
            <third_frame>   K  Q  A  L  E  L  P  *  A  F  W  H  Y  R  A  I  Q  W  M  I  S  G  D  G  I  *  G  L  G  *  A  S  S  L  H  F  Y  T  F  D  S  S  F  F  C  I  F  P  F  S  S  E  N  P  I  Q  Q  I  N  *  K  *  R  R  R  R  D  T  N  S  L  L  F  K  F  S  A  T  Y  F  I  R  D  E  Q  I  N  F  S  P  N  F  K  K  Q  L  L  N  Q  L  K  K  F  V  A  S  G  K  L  R  A  S  T  S  F  D  R  L  G  L  Q  L  L  N  L  I  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28868" stop="29077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KASLRASVSLLALQSDSMDDFRGRNLGIGLSQFTTFLYVRFIILLHFSFLFRKPDTADKLKMKKEKRYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29055" stop="29249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRDTNSLLFKFSATYFIRDEQINFSPNFKKQLLNQLKKFVASGKLRASTSFDRLGLQLLNLIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39817" PGL_stop="41605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39817" e_stop="40157"/>
            <exon e_start="41577" e_stop="41605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="39817" e_stop="40157" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40158" i_stop="41576" i_length="1419"/>
          </intron>
          <exon e_serial="2" e_score="0.655">
            <gDNA_exon_boundary e_start="41577" e_stop="41605" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39817" stop="40157"/>
              <exon start="41577" stop="41605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311751" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAATCATTCTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTGGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTTGTTGGGATTTCATCATCTTATAAGACAATTTTATTTTTGATAT : AAAAGGAAAACAATAAATGGAAAGTAGGA</gDNA_template>
            <first_frame> V  *  S  F  *  *  S  I  S  Q  E  F  S  F  S  S  L  Y  F  T  E  K  K  K  M  E  G  I  K  K  W  A  V  F  T  I  Y  M  M  M  L  V  A  F  G  N  V  G  G  A  M  G  A  G  E  E  S  P  A  P  A  P  S  M  E  S  A  A  I  T  L  F  I  P  V  F  M  A  A  F  A  S  L  A  A  F  F  F  *  S  I  F  V  I  C  Y  F  L  L  C  W  D  F  I  I  L  *  D  N  F  I  F  D  I :   K  G  K  Q  *  M  E  S  R  </first_frame>
            <second_frame>  F  N  H  S  S  N  P  F  L  K  S  S  L  F  L  L  C  I  L  L  K  R  K  K  W  R  V  L  R  S  G  L  F  S  P  F  T  *  *  C  L  S  L  S  E  M  *  E  E  Q  W  V  L  E  K  N  H  L  P  L  H  L  Q  W  R  V  L  L  L  L  C  L  F  L  F  S  W  L  P  L  L  L  W  L  L  S  S  S  N  Q  F  L  *  F  V  T  F  C  F  V  G  I  S  S  S  Y  K  T  I  L  F  L  I   : *  K  E  N  N  K  W  K  V  G </second_frame>
            <third_frame>   L  I  I  L  V  I  H  F  S  R  V  L  F  F  F  S  V  F  Y  *  K  E  K  N  G  G  Y  *  E  V  G  C  F  H  H  L  H  D  D  A  C  R  F  R  K  C  R  R  S  N  G  C  W  R  R  I  T  C  P  C  T  F  N  G  E  C  C  Y  Y  F  V  Y  S  C  F  H  G  C  L  C  F  S  G  C  F  L  L  L  I  N  F  C  N  L  L  L  S  A  L  L  G  F  H  H  L  I  R  Q  F  Y  F  *  Y  :  K  R  K  T  I  N  G  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39903" stop="40154"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVGCFHHLHDDACRFRKCRRSNGCWRRITCPCTFNGECCYYFVYSCFHGCLCFSGCFLLLINFCNLLLSALLGFHHLIRQFYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39835" stop="40083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISQEFSFSSLYFTEKKKMEGIKKWAVFTIYMMMLVAFGNVGGAMGAGEESPAPAPSMESAAITLFIPVFMAAFASLAAFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39822" e_stop="40151"/>
            <exon e_start="41557" e_stop="41575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.819" e_score="0.973"/>
          <exon-only e_score="0.684"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="39822" e_stop="40151" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.819">
            <gDNA_intron_boundary i_start="40152" i_stop="41556" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="0.684">
            <gDNA_exon_boundary e_start="41557" e_stop="41575" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39822" stop="40151"/>
              <exon start="41557" stop="41575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTCTAGTAATCCATTTCTCAAGAGTTCTCTTTTTCTTCTCTGTATTTTACTGAAAAGAAAAAAATGGAGGGTATTAAGAAGTGGGCTGTTTTCACCATTTACATGATGATGCTTGTCGCTTTCGGAAATGTAGGAGGAGCAATGGGTGCTGGAGAAGAATCACCTGCCCCTGCACCTTCAATGGAGAGTGCTGCTATTACTTTGTTTATTCCTGTTTTCATGGCTGCCTTTGCTTCTCTGGCTGCTTTCTTCTTCTAATCAATTTTTGTAATTTGTTACTTTCTGCTTTGTTGGGATTTCATCATCTTATAAGACAATTTTATTTT : ACAAGTAAACAAAGAAATA</gDNA_template>
            <first_frame> I  I  L  V  I  H  F  S  R  V  L  F  F  F  S  V  F  Y  *  K  E  K  N  G  G  Y  *  E  V  G  C  F  H  H  L  H  D  D  A  C  R  F  R  K  C  R  R  S  N  G  C  W  R  R  I  T  C  P  C  T  F  N  G  E  C  C  Y  Y  F  V  Y  S  C  F  H  G  C  L  C  F  S  G  C  F  L  L  L  I  N  F  C  N  L  L  L  S  A  L  L  G  F  H  H  L  I  R  Q  F  Y  F  :  T  S  K  Q  R  N  </first_frame>
            <second_frame>  S  F  *  *  S  I  S  Q  E  F  S  F  S  S  L  Y  F  T  E  K  K  K  M  E  G  I  K  K  W  A  V  F  T  I  Y  M  M  M  L  V  A  F  G  N  V  G  G  A  M  G  A  G  E  E  S  P  A  P  A  P  S  M  E  S  A  A  I  T  L  F  I  P  V  F  M  A  A  F  A  S  L  A  A  F  F  F  *  S  I  F  V  I  C  Y  F  L  L  C  W  D  F  I  I  L  *  D  N  F  I  L :   Q  V  N  K  E  I </second_frame>
            <third_frame>   H  S  S  N  P  F  L  K  S  S  L  F  L  L  C  I  L  L  K  R  K  K  W  R  V  L  R  S  G  L  F  S  P  F  T  *  *  C  L  S  L  S  E  M  *  E  E  Q  W  V  L  E  K  N  H  L  P  L  H  L  Q  W  R  V  L  L  L  L  C  L  F  L  F  S  W  L  P  L  L  L  W  L  L  S  S  S  N  Q  F  L  *  F  V  T  F  C  F  V  G  I  S  S  S  Y  K  T  I  L  F   : Y  K  *  T  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39903" stop="40151"/>
                    <exon start="41557" stop="41574"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVGCFHHLHDDACRFRKCRRSNGCWRRITCPCTFNGECCYYFVYSCFHGCLCFSGCFLLLINFCNLLLSALLGFHHLIRQFYFTSKQRN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39835" stop="40083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISQEFSFSSLYFTEKKKMEGIKKWAVFTIYMMMLVAFGNVGGAMGAGEESPAPAPSMESAAITLFIPVFMAAFASLAAFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44043" PGL_stop="40450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44043" e_stop="43944"/>
            <exon e_start="43847" e_stop="43647"/>
            <exon e_start="42472" e_stop="42353"/>
            <exon e_start="41148" e_stop="40876"/>
            <exon e_start="40773" e_stop="40450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.860"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.856" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.860">
            <gDNA_exon_boundary e_start="44043" e_stop="43944" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43847" e_stop="43647" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42472" e_stop="42353" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42352" i_stop="41149" i_length="1204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41148" e_stop="40876" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.856">
            <gDNA_intron_boundary i_start="40875" i_stop="40774" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="40773" e_stop="40450" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44043" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43997" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43977" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43977" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43686" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43686" stop="43647"/>
              <exon start="42472" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42469" stop="42353"/>
              <exon start="41148" stop="40876"/>
              <exon start="40773" stop="40469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432443" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40928" stop="40876"/>
              <exon start="40773" stop="40450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGACCACTGGTTTTTCTTGCTCAGAATCCTTTTGCTCAAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAAC : ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT : GTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAG : GTTGATAATTTTGGCACAGTGAACCTTGTGGATGCATGCCAAAAACTTGGTATTGATAGGTTCATCCTTATAAGTTCAATTCTTGTCAATGGGGCTGCAATGGGTCAGTTGTTCAATCCAGTCTATATAATCCTTAATGTTATGGGACTCGTATTGGTAGCAAAGCTTCAAGCTGAGAGATACATTCGAAAATCTGGCATCAACTACACAATAATTCGGCCTGGTGGGCTAAAAAACGATCCTCCACAAGGGAATATAGTCATGCAACCAGAG : GATACTCTTTTTCGAGGCTCAATATCTAGAGATCAGGTAGCTGAAGTTGCAGTCGAGGCATTGCTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTGGCTAGTACCGATGCCCCTAAACGTTCATTCGAGGAACTCTTTGGTTCAATAGAACAACAGTGACTTGTAAGCATGCAACTTCTATTCCATCCCCTAAATTGTTACTTTGATATATACGATACTCAACATTTCTTGTGTAAATGATGATACTGTTGTGATCTGAACTTGGTTCTTGCGCTAAGTTCACAACACTAATCAAAAGAATTACAACTTATTTCCAGA</gDNA_template>
            <first_frame> Q  D  H  W  F  F  L  L  R  I  L  L  L  K  P  P  Y  I  L  C  P  H  *  K  S  H  F  S  I  L  N  Q  Q   : H  G  R  K  *  N  *  G  G  K  R  S  R  Y  W  S  E  E  E  N  I  C  C  W  C  N  W  E  H  R  E  E  D  C  *  A  A  F  G  *  G  F  C  C  *  S  W  G  S  *  C  *  Q  G  *  I  C  F  T  R  S  K  P  F  S  S  N   : C  E  N  R  C  D  R  G  I  S  *  T  S  R  C  H  W  *  *  F  Q  C  G  N  M  C  Y  R  F  P  A  F  V  E  L  V  D  T  L  E   : G  *  *  F  W  H  S  E  P  C  G  C  M  P  K  T  W  Y  *  *  V  H  P  Y  K  F  N  S  C  Q  W  G  C  N  G  S  V  V  Q  S  S  L  Y  N  P  *  C  Y  G  T  R  I  G  S  K  A  S  S  *  E  I  H  S  K  I  W  H  Q  L  H  N  N  S  A  W  W  A  K  K  R  S  S  T  R  E  Y  S  H  A  T  R   : G  Y  S  F  S  R  L  N  I  *  R  S  G  S  *  S  C  S  R  G  I  A  P  S  R  I  S  L  Q  S  R  G  D  S  G  *  Y  R  C  P  *  T  F  I  R  G  T  L  W  F  N  R  T  T  V  T  C  K  H  A  T  S  I  P  S  P  K  L  L  L  *  Y  I  R  Y  S  T  F  L  V  *  M  M  I  L  L  *  S  E  L  G  S  C  A  K  F  T  T  L  I  K  R  I  T  T  Y  F  Q  </first_frame>
            <second_frame>  K  T  T  G  F  S  C  S  E  S  F  C  S  N  L  H  T  F  S  V  H  T  K  N  H  I  F  P  S  *  T  N  N  :  M  E  G  S  E  I  K  E  E  K  E  A  G  I  G  Q  K  K  K  I  F  V  A  G  A  T  G  N  T  G  K  R  I  V  E  Q  L  L  A  K  G  F  A  V  K  A  G  V  R  D  V  D  K  A  K  S  V  L  P  E  A  N  P  F  L  Q  I  :  V  K  T  D  V  T  E  G  S  A  K  L  A  D  A  I  G  D  D  S  N  A  V  I  C  A  T  G  F  Q  P  S  W  N  L  L  T  P  W  K  :  V  D  N  F  G  T  V  N  L  V  D  A  C  Q  K  L  G  I  D  R  F  I  L  I  S  S  I  L  V  N  G  A  A  M  G  Q  L  F  N  P  V  Y  I  I  L  N  V  M  G  L  V  L  V  A  K  L  Q  A  E  R  Y  I  R  K  S  G  I  N  Y  T  I  I  R  P  G  G  L  K  N  D  P  P  Q  G  N  I  V  M  Q  P  E  :  D  T  L  F  R  G  S  I  S  R  D  Q  V  A  E  V  A  V  E  A  L  L  H  P  E  S  H  Y  K  V  V  E  I  V  A  S  T  D  A  P  K  R  S  F  E  E  L  F  G  S  I  E  Q  Q  *  L  V  S  M  Q  L  L  F  H  P  L  N  C  Y  F  D  I  Y  D  T  Q  H  F  L  C  K  *  *  Y  C  C  D  L  N  L  V  L  A  L  S  S  Q  H  *  S  K  E  L  Q  L  I  S  R </second_frame>
            <third_frame>   R  P  L  V  F  L  A  Q  N  P  F  A  Q  T  S  I  H  S  L  S  T  L  K  I  T  F  F  H  L  K  P  T  T :   W  K  E  V  K  L  R  R  K  K  K  Q  V  L  V  R  R  R  K  Y  L  L  L  V  Q  L  G  T  Q  G  R  G  L  L  S  S  F  W  L  R  V  L  L  L  K  L  G  F  V  M  L  T  R  L  N  L  F  Y  P  K  Q  T  L  F  F  K  L :   *  K  P  M  *  Q  R  D  Q  L  N  *  P  M  P  L  V  M  I  P  M  R  *  Y  V  L  Q  V  S  S  L  R  G  T  C  *  H  L  G  R :   L  I  I  L  A  Q  *  T  L  W  M  H  A  K  N  L  V  L  I  G  S  S  L  *  V  Q  F  L  S  M  G  L  Q  W  V  S  C  S  I  Q  S  I  *  S  L  M  L  W  D  S  Y  W  *  Q  S  F  K  L  R  D  T  F  E  N  L  A  S  T  T  Q  *  F  G  L  V  G  *  K  T  I  L  H  K  G  I  *  S  C  N  Q  R :   I  L  F  F  E  A  Q  Y  L  E  I  R  *  L  K  L  Q  S  R  H  C  S  I  Q  N  L  I  T  K  S  W  R  *  W  L  V  P  M  P  L  N  V  H  S  R  N  S  L  V  Q  *  N  N  S  D  L  *  A  C  N  F  Y  S  I  P  *  I  V  T  L  I  Y  T  I  L  N  I  S  C  V  N  D  D  T  V  V  I  *  T  W  F  L  R  *  V  H  N  T  N  Q  K  N  Y  N  L  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43952" stop="43944"/>
                    <exon start="43847" stop="43647"/>
                    <exon start="42472" stop="42353"/>
                    <exon start="41148" stop="40876"/>
                    <exon start="40773" stop="40609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMEGSEIKEEKEAGIGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKTDVTEGSAKLADAIGDDSNAVICATGFQPSWNLLTPWKVDNFGTVNLVDACQKLGIDRFILISSILVNGAAMGQLFNPVYIILNVMGLVLVAKLQAERYIRKSGINYTIIRPGGLKNDPPQGNIVMQPEDTLFRGSISRDQVAEVAVEALLHPESHYKVVEIVASTDAPKRSFEELFGSIEQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44004" e_stop="43944"/>
            <exon e_start="43847" e_stop="43647"/>
            <exon e_start="42472" e_stop="42212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.995"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="44004" e_stop="43944" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43943" i_stop="43848" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="43847" e_stop="43647" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43646" i_stop="42473" i_length="1174"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="42472" e_stop="42212" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44004" stop="43944"/>
              <exon start="43847" stop="43647"/>
              <exon start="42472" stop="42212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCTCCATACATTCTCTGTCCACACTAAAAATCACATTTTTCCATCTTAAACCAACAAC : ATGGAAGGAAGTGAAATTAAGGAGGAAAAAGAAGCAGGTATTGGTCAGAAGAAGAAAATATTTGTTGCTGGTGCAACTGGGAACACAGGGAAGAGGATTGTTGAGCAGCTTTTGGCTAAGGGTTTTGCTGTTAAAGCTGGGGTTCGTGATGTTGACAAGGCTAAATCTGTTTTACCCGAAGCAAACCCTTTTCTTCAAATT : GTGAAAACCGATGTGACAGAGGGATCAGCTAAACTAGCCGATGCCATTGGTGATGATTCCAATGCGGTAATATGTGCTACAGGTTTCCAGCCTTCGTGGAACTTGTTGACACCTTGGAAGGTTAGTCAACTTCAATCCACAAAATAGTAGTATTTACCAGATCCTTCACGCCTGATCTTGATGATCAGCAAAGTGAGATATTTTGTGATAGGCTTGATGGGAGTTTCCGTCTCATTTTATGCAATGCACGTCTTTTCAGTA</gDNA_template>
            <first_frame> K  P  P  Y  I  L  C  P  H  *  K  S  H  F  S  I  L  N  Q  Q   : H  G  R  K  *  N  *  G  G  K  R  S  R  Y  W  S  E  E  E  N  I  C  C  W  C  N  W  E  H  R  E  E  D  C  *  A  A  F  G  *  G  F  C  C  *  S  W  G  S  *  C  *  Q  G  *  I  C  F  T  R  S  K  P  F  S  S  N   : C  E  N  R  C  D  R  G  I  S  *  T  S  R  C  H  W  *  *  F  Q  C  G  N  M  C  Y  R  F  P  A  F  V  E  L  V  D  T  L  E  G  *  S  T  S  I  H  K  I  V  V  F  T  R  S  F  T  P  D  L  D  D  Q  Q  S  E  I  F  C  D  R  L  D  G  S  F  R  L  I  L  C  N  A  R  L  F  S  </first_frame>
            <second_frame>  N  L  H  T  F  S  V  H  T  K  N  H  I  F  P  S  *  T  N  N  :  M  E  G  S  E  I  K  E  E  K  E  A  G  I  G  Q  K  K  K  I  F  V  A  G  A  T  G  N  T  G  K  R  I  V  E  Q  L  L  A  K  G  F  A  V  K  A  G  V  R  D  V  D  K  A  K  S  V  L  P  E  A  N  P  F  L  Q  I  :  V  K  T  D  V  T  E  G  S  A  K  L  A  D  A  I  G  D  D  S  N  A  V  I  C  A  T  G  F  Q  P  S  W  N  L  L  T  P  W  K  V  S  Q  L  Q  S  T  K  *  *  Y  L  P  D  P  S  R  L  I  L  M  I  S  K  V  R  Y  F  V  I  G  L  M  G  V  S  V  S  F  Y  A  M  H  V  F  S  V </second_frame>
            <third_frame>   T  S  I  H  S  L  S  T  L  K  I  T  F  F  H  L  K  P  T  T :   W  K  E  V  K  L  R  R  K  K  K  Q  V  L  V  R  R  R  K  Y  L  L  L  V  Q  L  G  T  Q  G  R  G  L  L  S  S  F  W  L  R  V  L  L  L  K  L  G  F  V  M  L  T  R  L  N  L  F  Y  P  K  Q  T  L  F  F  K  L :   *  K  P  M  *  Q  R  D  Q  L  N  *  P  M  P  L  V  M  I  P  M  R  *  Y  V  L  Q  V  S  S  L  R  G  T  C  *  H  L  G  R  L  V  N  F  N  P  Q  N  S  S  I  Y  Q  I  L  H  A  *  S  *  *  S  A  K  *  D  I  L  *  *  A  *  W  E  F  P  S  H  F  M  Q  C  T  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43952" stop="43944"/>
                    <exon start="43847" stop="43647"/>
                    <exon start="42472" stop="42326"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNNMEGSEIKEEKEAGIGQKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVRDVDKAKSVLPEANPFLQIVKTDVTEGSAKLADAIGDDSNAVICATGFQPSWNLLTPWKVSQLQSTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48178" PGL_stop="44796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48178" e_stop="48036"/>
            <exon e_start="47904" e_stop="47704"/>
            <exon e_start="47159" e_stop="47040"/>
            <exon e_start="45514" e_stop="45242"/>
            <exon e_start="45149" e_stop="44796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.375" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48178" e_stop="48036" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47904" e_stop="47704" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.375" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47703" i_stop="47160" i_length="544"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47159" e_stop="47040" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47039" i_stop="45515" i_length="1525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45514" e_stop="45242" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45241" i_stop="45150" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="45149" e_stop="44796" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48178" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48164" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48162" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48162" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48161" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48159" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48155" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48151" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48144" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48144" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48138" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48107" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48070" stop="48036"/>
              <exon start="47904" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47818" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553904" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47778" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="45030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47759" stop="47704"/>
              <exon start="47159" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47154" stop="47040"/>
              <exon start="45514" stop="45242"/>
              <exon start="45149" stop="44840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433059" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45265" stop="45242"/>
              <exon start="45149" stop="44796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45265" stop="45242"/>
              <exon start="45149" stop="44796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGGCTCGAGTAAGAAAAATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT : ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATT : GTGAAAGCGGATGTCACAGAGGGATCAGTAAGACTAGCTGATGCCATTGGGAATGATTCAGATGCAGTAATATGTGCTACAGGATTTCGGCGTTCACTGGATTTTTTGGCTCCATGGAAG : GTTGATAACTTTGGCACAGTAAACCTTGTTGAAGCATGCCGAACACTTGGTGTTAAAAGATTCCTCCTCGTTAGTTCCATTCTGGTCAATGGAGCTGCAATGGGACAGTTGTTCAATCCAGCATATGTATTTCTCAATGTTCTTGGACTGACATTGATAGCAAAGCTCCAAGCAGAGCAATATATTCGAAGATCTGGCATCAATTACACAATAATAAGGCCTGGTGGGCTAAAAAACGATCCACCTCAAGGAAACATCGTAATGGAACAAGAG : GATACCCTTTACGAAGGCTCGATATCTAGAGATCAGGTAGCTGAAGTAGCAGTTGAGGCACTACTCCATCCAGAATCTCATTACAAAGTCGTGGAGATAGTAGCTCGTACTGATGCCCCTAAACGTTCATTCAAGGAATTATTTGGTTCTATAAAACAGCAGTAGCTTGTCAAGATGATGTTTTATGTCTATGTTTAAGCACACGATTTATAAATATAGTTACTCAAAGATCGTAGTGCAACAAATTTATATTGCAACATCCTTCTCTGCAATCTTGTAACAATGGAAGTGAATGATTGAAAGAGAGCTTATTGACCCCCGTTTCACGCGGGCGAAGGGTCTAAAGGATACGTA</gDNA_template>
            <first_frame> Q  G  L  E  *  E  K  S  W  L  L  P  L  V  S  S  S  L  K  H  R  P  F  L  S  P  L  N  G  P  L  F  L  F  L  S  I  K  F  T  L  F  G  S  E  Q  Q  I :   *  K  K  V  K  L  K  E  K  R  K  W  V  S  V  K  R  R  K  Y  L  L  L  V  R  L  G  T  L  G  R  G  L  L  S  S  F  W  Q  R  V  L  L  L  R  L  G  F  L  M  L  I  R  L  N  Q  P  Y  R  V  K  T  L  I  F  K  L :   *  K  R  M  S  Q  R  D  Q  *  D  *  L  M  P  L  G  M  I  Q  M  Q  *  Y  V  L  Q  D  F  G  V  H  W  I  F  W  L  H  G  R :   L  I  T  L  A  Q  *  T  L  L  K  H  A  E  H  L  V  L  K  D  S  S  S  L  V  P  F  W  S  M  E  L  Q  W  D  S  C  S  I  Q  H  M  Y  F  S  M  F  L  D  *  H  *  *  Q  S  S  K  Q  S  N  I  F  E  D  L  A  S  I  T  Q  *  *  G  L  V  G  *  K  T  I  H  L  K  E  T  S  *  W  N  K  R :   I  P  F  T  K  A  R  Y  L  E  I  R  *  L  K  *  Q  L  R  H  Y  S  I  Q  N  L  I  T  K  S  W  R  *  *  L  V  L  M  P  L  N  V  H  S  R  N  Y  L  V  L  *  N  S  S  S  L  S  R  *  C  F  M  S  M  F  K  H  T  I  Y  K  Y  S  Y  S  K  I  V  V  Q  Q  I  Y  I  A  T  S  F  S  A  I  L  *  Q  W  K  *  M  I  E  R  E  L  I  D  P  R  F  T  R  A  K  G  L  K  D  T   </first_frame>
            <second_frame>  R  G  S  S  K  K  N  H  G  Y  C  H  W  S  L  L  P  *  N  I  G  L  F  Y  H  L  *  T  A  L  C  F  S  F  C  Q  *  S  S  L  F  S  A  Q  S  S  K   : Y  R  R  K  *  N  *  R  R  R  G  S  G  Y  Q  *  K  E  E  N  I  C  C  W  C  D  W  E  H  W  E  E  D  C  *  A  A  S  G  K  G  F  C  C  *  G  W  G  S  *  C  *  *  G  *  I  N  L  T  G  S  K  P  *  S  S  N   : C  E  S  G  C  H  R  G  I  S  K  T  S  *  C  H  W  E  *  F  R  C  S  N  M  C  Y  R  I  S  A  F  T  G  F  F  G  S  M  E   : G  *  *  L  W  H  S  K  P  C  *  S  M  P  N  T  W  C  *  K  I  P  P  R  *  F  H  S  G  Q  W  S  C  N  G  T  V  V  Q  S  S  I  C  I  S  Q  C  S  W  T  D  I  D  S  K  A  P  S  R  A  I  Y  S  K  I  W  H  Q  L  H  N  N  K  A  W  W  A  K  K  R  S  T  S  R  K  H  R  N  G  T  R   : G  Y  P  L  R  R  L  D  I  *  R  S  G  S  *  S  S  S  *  G  T  T  P  S  R  I  S  L  Q  S  R  G  D  S  S  S  Y  *  C  P  *  T  F  I  Q  G  I  I  W  F  Y  K  T  A  V  A  C  Q  D  D  V  L  C  L  C  L  S  T  R  F  I  N  I  V  T  Q  R  S  *  C  N  K  F  I  L  Q  H  P  S  L  Q  S  C  N  N  G  S  E  *  L  K  E  S  L  L  T  P  V  S  R  G  R  R  V  *  R  I  R  </second_frame>
            <third_frame>   G  A  R  V  R  K  I  M  A  T  A  T  G  L  F  F  L  K  T  S  A  F  S  I  T  S  K  R  P  S  V  S  L  F  V  N  K  V  H  S  F  R  L  R  A  A  N  :  I  E  E  S  E  I  E  G  E  E  E  V  G  I  S  E  K  K  K  I  F  V  A  G  A  T  G  N  T  G  K  R  I  V  E  Q  L  L  A  K  G  F  A  V  K  A  G  V  L  D  V  D  K  A  K  S  T  L  P  G  Q  N  P  D  L  Q  I  :  V  K  A  D  V  T  E  G  S  V  R  L  A  D  A  I  G  N  D  S  D  A  V  I  C  A  T  G  F  R  R  S  L  D  F  L  A  P  W  K  :  V  D  N  F  G  T  V  N  L  V  E  A  C  R  T  L  G  V  K  R  F  L  L  V  S  S  I  L  V  N  G  A  A  M  G  Q  L  F  N  P  A  Y  V  F  L  N  V  L  G  L  T  L  I  A  K  L  Q  A  E  Q  Y  I  R  R  S  G  I  N  Y  T  I  I  R  P  G  G  L  K  N  D  P  P  Q  G  N  I  V  M  E  Q  E  :  D  T  L  Y  E  G  S  I  S  R  D  Q  V  A  E  V  A  V  E  A  L  L  H  P  E  S  H  Y  K  V  V  E  I  V  A  R  T  D  A  P  K  R  S  F  K  E  L  F  G  S  I  K  Q  Q  *  L  V  K  M  M  F  Y  V  Y  V  *  A  H  D  L  *  I  *  L  L  K  D  R  S  A  T  N  L  Y  C  N  I  L  L  C  N  L  V  T  M  E  V  N  D  *  K  R  A  Y  *  P  P  F  H  A  G  E  G  S  K  G  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48176" stop="48036"/>
                    <exon start="47904" stop="47704"/>
                    <exon start="47159" stop="47040"/>
                    <exon start="45514" stop="45242"/>
                    <exon start="45149" stop="44985"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GARVRKIMATATGLFFLKTSAFSITSKRPSVSLFVNKVHSFRLRAANIEESEIEGEEEVGISEKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVLDVDKAKSTLPGQNPDLQIVKADVTEGSVRLADAIGNDSDAVICATGFRRSLDFLAPWKVDNFGTVNLVEACRTLGVKRFLLVSSILVNGAAMGQLFNPAYVFLNVLGLTLIAKLQAEQYIRRSGINYTIIRPGGLKNDPPQGNIVMEQEDTLYEGSISRDQVAEVAVEALLHPESHYKVVEIVARTDAPKRSFKELFGSIKQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48159" e_stop="48036"/>
            <exon e_start="47904" e_stop="47700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48159" e_stop="48036" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48035" i_stop="47905" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="47904" e_stop="47700" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48159" stop="48036"/>
              <exon start="47904" stop="47700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCATGGCTACTGCCACTGGTCTCTTCTTCCTTAAAACATCGGCCTTTTCTATCACCTCTAAACGGCCCTCTGTTTCTCTTTTTGTCAATAAAGTTCACTCTTTTCGGCTCAGAGCAGCAAAT : ATAGAAGAAAGTGAAATTGAAGGAGAAGAGGAAGTGGGTATCAGTGAAAAGAAGAAAATATTTGTTGCTGGTGCGACTGGGAACACTGGGAAGAGGATTGTTGAGCAGCTTCTGGCAAAGGGTTTTGCTGTTAAGGCTGGGGTTCTTGATGTTGATAAGGCTAAATCAACCTTACCGGGTCAAAACCCTGATCTTCAAATTGTGG</gDNA_template>
            <first_frame> N  H  G  Y  C  H  W  S  L  L  P  *  N  I  G  L  F  Y  H  L  *  T  A  L  C  F  S  F  C  Q  *  S  S  L  F  S  A  Q  S  S  K   : Y  R  R  K  *  N  *  R  R  R  G  S  G  Y  Q  *  K  E  E  N  I  C  C  W  C  D  W  E  H  W  E  E  D  C  *  A  A  S  G  K  G  F  C  C  *  G  W  G  S  *  C  *  *  G  *  I  N  L  T  G  S  K  P  *  S  S  N  C   </first_frame>
            <second_frame>  I  M  A  T  A  T  G  L  F  F  L  K  T  S  A  F  S  I  T  S  K  R  P  S  V  S  L  F  V  N  K  V  H  S  F  R  L  R  A  A  N  :  I  E  E  S  E  I  E  G  E  E  E  V  G  I  S  E  K  K  K  I  F  V  A  G  A  T  G  N  T  G  K  R  I  V  E  Q  L  L  A  K  G  F  A  V  K  A  G  V  L  D  V  D  K  A  K  S  T  L  P  G  Q  N  P  D  L  Q  I  V  </second_frame>
            <third_frame>   S  W  L  L  P  L  V  S  S  S  L  K  H  R  P  F  L  S  P  L  N  G  P  L  F  L  F  L  S  I  K  F  T  L  F  G  S  E  Q  Q  I :   *  K  K  V  K  L  K  E  K  R  K  W  V  S  V  K  R  R  K  Y  L  L  L  V  R  L  G  T  L  G  R  G  L  L  S  S  F  W  Q  R  V  L  L  L  R  L  G  F  L  M  L  I  R  L  N  Q  P  Y  R  V  K  T  L  I  F  K  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="48036"/>
                    <exon start="47904" stop="47701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMATATGLFFLKTSAFSITSKRPSVSLFVNKVHSFRLRAANIEESEIEGEEEVGISEKKKIFVAGATGNTGKRIVEQLLAKGFAVKAGVLDVDKAKSTLPGQNPDLQIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="55848" PGL_stop="49349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55848" e_stop="55722"/>
            <exon e_start="55587" e_stop="55469"/>
            <exon e_start="55188" e_stop="54980"/>
            <exon e_start="53269" e_stop="53139"/>
            <exon e_start="53052" e_stop="52814"/>
            <exon e_start="52719" e_stop="52483"/>
            <exon e_start="52274" e_stop="52120"/>
            <exon e_start="52049" e_stop="51841"/>
            <exon e_start="51753" e_stop="51588"/>
            <exon e_start="51502" e_stop="51306"/>
            <exon e_start="51112" e_stop="51053"/>
            <exon e_start="50968" e_stop="50876"/>
            <exon e_start="50635" e_stop="50415"/>
            <exon e_start="50145" e_stop="50089"/>
            <exon e_start="49998" e_stop="49857"/>
            <exon e_start="49699" e_stop="49349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.983"/>
          <exon-intron don_prob="0.917" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.909" acc_prob="0.943" e_score="0.992"/>
          <exon-intron don_prob="0.929" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.984" acc_prob="0.965" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.672" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="55848" e_stop="55722" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55721" i_stop="55588" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="55587" e_stop="55469" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55468" i_stop="55189" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="55188" e_stop="54980" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.982">
            <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="53269" e_stop="53139" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.943">
            <gDNA_intron_boundary i_start="53138" i_stop="53053" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="53052" e_stop="52814" e_length="239"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52813" i_stop="52720" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="52719" e_stop="52483" e_length="237"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.965">
            <gDNA_intron_boundary i_start="52482" i_stop="52275" i_length="208"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52274" e_stop="52120" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52119" i_stop="52050" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52049" e_stop="51841" e_length="209"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51840" i_stop="51754" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51753" e_stop="51588" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.672" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51587" i_stop="51503" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="51502" e_stop="51306" e_length="197"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51305" i_stop="51113" i_length="193"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="51112" e_stop="51053" e_length="60"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51052" i_stop="50969" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="0.989">
            <gDNA_exon_boundary e_start="50968" e_stop="50876" e_length="93"/>
          </exon>
          <intron i_serial="12" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50875" i_stop="50636" i_length="240"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="50635" e_stop="50415" e_length="221"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="50414" i_stop="50146" i_length="269"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="50145" e_stop="50089" e_length="57"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="49998" e_stop="49857" e_length="142"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.941">
            <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157"/>
          </intron>
          <exon e_serial="16" e_score="0.994">
            <gDNA_exon_boundary e_start="49699" e_stop="49349" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55848" stop="55722"/>
              <exon start="55587" stop="55469"/>
              <exon start="55188" stop="54980"/>
              <exon start="53269" stop="53174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55842" stop="55722"/>
              <exon start="55587" stop="55469"/>
              <exon start="55188" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52814"/>
              <exon start="52719" stop="52568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55029" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52814"/>
              <exon start="52719" stop="52490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52912" stop="52814"/>
              <exon start="52719" stop="52483"/>
              <exon start="52274" stop="52141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52594" stop="52483"/>
              <exon start="52274" stop="52120"/>
              <exon start="52049" stop="51969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52553" stop="52483"/>
              <exon start="52274" stop="52120"/>
              <exon start="52049" stop="51841"/>
              <exon start="51753" stop="51588"/>
              <exon start="51502" stop="51396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52200" stop="52120"/>
              <exon start="52049" stop="51841"/>
              <exon start="51753" stop="51588"/>
              <exon start="51502" stop="51378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51737" stop="51588"/>
              <exon start="51502" stop="51306"/>
              <exon start="51112" stop="51053"/>
              <exon start="50968" stop="50953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51082" stop="51053"/>
              <exon start="50968" stop="50876"/>
              <exon start="50635" stop="50415"/>
              <exon start="50145" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50500" stop="50415"/>
              <exon start="50145" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50499" stop="50415"/>
              <exon start="50145" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50499" stop="50415"/>
              <exon start="50145" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50137" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50128" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTCTCTCCTCCATTTCTCTCTCTCTCTCACACAGAGATTAACACTTACTCAGTCAGCCATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTCGAACAAACT : GAACTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATCAACAACAATAGGCGTCGTGTCATTATGGACCTCGCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAG : GCTTCTTCAGAATCCTAGTGAGTATATGCAACCGTTGATTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGT : GTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGG : GATGATAATGGCAATTTGCTAGTTACTGAGTACGGTTTATGCACATACAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTGGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAATGGTGTATTCAG : AACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTGAAAGACATCAAGAATATTTCTGTTAAAGATGATGCTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGG : TGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAG : GAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCT : TACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAG : GTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGGATCCATCCTGAGCTGACTGATGAG : GCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTTCGAATGCAAAG : ACTGGGGGAGGAACACTTCCGATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAG : GTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG : TGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG : ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG : ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</gDNA_template>
            <first_frame> S  L  S  P  P  F  L  S  L  S  H  T  E  I  N  T  Y  S  V  S  H  G  S  K  R  R  G  *  G  Y  A  *  A  N  F  P  Q  V  L  R  T  N   : *  T  G  H  G  A  E  E  G  I  *  I  Y  D  Q  Q  Q  *  A  S  C  H  Y  G  P  R  *  F  L  Q  *  Q  R  R  L  *  F  G  S  Q  :  A  S  S  E  S  *  *  V  Y  A  T  V  D  *  C  F  N  R  Y  D  P  D  P  *  S  Q  V  P  *  R  R  R  A  S  L  G  W  V  Y  W  S  F  C  F  E  E  S  N  P  K  R  A  V  V  P  F  H  W  F  H  G  L  R  *  R  H  C  Y  Q  V :   F  S  C  E  A  K  G  C  K  E  R  P  L  L  S  D  N  *  E  I  Y  G  P  *  I  Q  R  Y  H  I  E  C  W  S  A  N  W  F  C  V  P  D  T   : G  *  *  W  Q  F  A  S  Y  *  V  R  F  M  H  I  Q  R  S  S  N  F  I  N  A  R  G  A  *  K  F  C  S  W  S  T  S  *  N  S  G  Y  S  R  R  G  *  S  C  *  F  M  Q  A  W  R  P  C  S  S  C  W  G  I  Q  S  S  S  *  *  K  P  R  K  H  E  W  C  I  Q  :  N  N  P  H  R  *  Q  C  V  S  P  E  Q  V  S  K  C  T  K  L  H  R  E  S  P  E  R  H  Q  E  Y  F  C  *  R  *  C  F  *  S  S  C  *  F  T  G  T  I  Y  L  W  A  F  V  D  K  E  S  S  C  S  A  H  A  W  W  N  *  K  E  L  E  K  W  D  S  L  K  R  :  *  Y  K  H  D  D  G  W  *  S  I  C  C  Q  V  S  A  A  E  S  N  Y  E  Y  C  S  V  S  N  I  N  Y  W  S  W  F  F  R  S  W  F  D  S  C  S  Y  F  *  S  R  N  R :   R  K  K  A  R  S  W  C  H  G  T  C  *  Q  R  C  C  L  H  *  *  V  *  *  N  E  *  P  R  S  S  C  H  T  *  G  Y  G  T  A  D  C  N  H  C  *  S  R  N  S  C  I  L  E  C  S  M  Q  C  S  C  S  C  K  S  H  I  W  F   : L  R  P  I  I  N  S  N  K  E  H  W  T  S  R  L  T  A  L  S  F  *  F  V  V  Y  C  S  G  S  N  G  S  W  G  *  S  S  N  F  *  A  C  S  A  H  A  S  V  S  F  S  N  R  W  R :   *  L  N  T  R  *  *  F  K  I  *  R  A  K  *  Q  G  *  N  A  R  L  C  *  V  *  S  D  A  T  W  *  K  F  Y  S  E  Q  E  G  Y  I  D  H  P  V  S  Q  D  L  H  S  L  C  K  K  Q  D  P  S  *  A  D  *  *   : G  I  *  *  H  S  Y  C  L  C  R  A  *  E  C  Q  F  E  C  K   : D  W  G  R  N  T  S  D  Y  C  Q  N  F  G  N  N  Y  S  A  L  N  C  P  C  Q  A  E  V  E  K  T   : G  F  E  V  *  C  R  S  C  S  S  S  S  T  F  C  H  I  S  S  R  T  D  *  D  G  G  T  *  T  R  E  S  K  G  I  G  E  E  A  Q  Y  *  P  *  W  R  *  Q  C  F  S  S  *  T  Q  S  R  A  *  C  R  *  *  I  S  *  S  *  S  R  R  S  R  :  *  S  D  G  N  *  *  Y  S  S  S  *  D  Q  H  I  S  *  E  :  I  A  S  I  Q  C  S  T  W  *  A  Q  E  L  T  T  C  G  T  N  S  S  C  *  C  G  E  C  C  Q  Q  W  G  D  C  T  L  L  K  G  G  D  R  E  I  I  K   : D  D  G  R  E  R  P  I  V  G  T  Q  *  Y  Q  C  S  L  L  H  V  N  R  S  N  W  S  A  R  K  F  S  C  L  L  S  D  G  L  S  K  P  N  *  M  G  G  Y  T  I  C  Y  *  T  I  A  S  L  Y  V  S  D  S  I  M  V  F  I  Y  L  S  P  L  *  Y  S  G  S  D  E  A  H  E  S  Y  F  F  C  F  R  E  K  L  N  G  *  C  I  M  *  Y  T  I  Y  D  D  R  L  F  Q  L  K  S  C  N  S  R  </first_frame>
            <second_frame>  H  S  L  L  H  F  S  L  S  L  T  Q  R  L  T  L  T  Q  S  A  M  D  L  S  D  E  V  R  A  T  H  K  R  T  F  L  K  F  F  E  Q  T  :  E  L  D  T  E  L  K  K  E  F  E  S  M  I  N  N  N  R  R  R  V  I  M  D  L  A  D  F  Y  N  D  R  E  G  S  D  L  A  R  R :   L  L  Q  N  P  S  E  Y  M  Q  P  L  I  D  A  L  T  D  M  I  R  T  H  N  P  K  Y  L  K  E  G  E  Q  V  L  V  G  F  T  G  P  F  V  S  R  R  V  T  P  R  E  L  L  S  R  F  I  G  S  M  V  C  V  E  G  I  V  T  K   : C  S  L  V  R  P  K  V  V  K  S  V  H  F  C  P  T  T  E  K  F  T  A  R  E  Y  R  D  I  T  S  N  V  G  L  P  T  G  S  V  Y  P  T  R  :  D  D  N  G  N  L  L  V  T  E  Y  G  L  C  T  Y  K  D  H  Q  T  L  S  M  Q  E  V  P  E  N  S  A  P  G  Q  L  P  R  T  V  D  I  V  V  E  D  D  L  V  D  S  C  K  P  G  D  R  V  A  V  V  G  V  Y  K  A  L  P  S  K  S  Q  G  S  M  N  G  V  F  R :   T  I  L  I  G  N  N  V  S  L  L  N  K  S  A  N  A  P  N  Y  T  E  K  V  L  K  D  I  K  N  I  S  V  K  D  D  A  F  D  L  L  A  N  S  L  A  P  S  I  Y  G  H  L  W  I  K  K  A  V  V  L  L  M  L  G  G  I  E  K  N  L  K  N  G  T  H  L  R  G :   D  I  N  M  M  M  V  G  D  P  S  V  A  K  S  Q  L  L  R  A  I  M  N  I  A  P  L  A  I  S  T  T  G  R  G  S  S  G  V  G  L  T  A  A  V  T  S  D  Q  E  T   : G  E  R  R  L  E  A  G  A  M  V  L  A  D  R  G  V  V  C  I  D  E  F  D  K  M  N  D  Q  D  R  V  A  I  H  E  V  M  E  Q  Q  T  V  T  I  A  K  A  G  I  H  A  S  L  N  A  R  C  S  V  V  A  A  A  N  P  I  Y  G  S  :  Y  D  R  S  L  T  P  T  K  N  I  G  L  P  D  S  L  L  S  R  F  D  L  L  F  I  V  L  D  Q  M  D  P  G  V  D  R  Q  I  S  E  H  V  L  R  M  H  R  Y  R  S  P  I  D  G   : G  S  S  T  L  D  N  D  S  R  Y  E  E  Q  N  D  K  D  E  M  P  V  Y  V  K  Y  N  R  M  L  H  G  R  N  S  T  R  S  K  K  D  T  L  T  I  Q  F  L  K  T  Y  I  H  Y  A  K  N  R  I  H  P  E  L  T  D  E  :  A  S  D  N  I  A  T  A  Y  A  E  L  R  S  A  S  S  N  A  K  :  T  G  G  G  T  L  P  I  T  A  R  T  L  E  T  I  I  R  L  S  T  A  H  A  K  L  K  L  R  R  Q  :  V  L  K  S  D  V  E  A  A  L  Q  V  L  H  F  A  I  Y  H  Q  E  L  T  E  M  E  E  R  E  Q  E  R  A  K  E  L  G  K  K  R  S  T  D  H  D  G  G  N  N  A  S  A  R  K  R  R  A  E  H  D  A  D  D  E  S  A  D  H  E  A  G  G  V  G :   E  A  M  E  T  D  D  T  P  A  A  E  I  S  T  S  P  E  R :   L  Q  A  F  S  A  A  L  G  R  H  R  N  L  Q  H  V  E  Q  I  P  V  A  D  V  E  N  V  V  N  N  G  A  T  V  P  Y  S  K  A  E  I  E  K  L  L  K  :  M  M  E  E  K  G  Q  L  W  V  H  S  D  T  N  V  V  Y  F  M  *  I  G  P  I  G  A  L  A  S  S  V  V  S  F  L  M  D  C  P  S  L  T  K  W  G  D  T  P  F  V  I  E  P  *  L  L  F  M  F  L  I  V  L  W  Y  S  S  I  Y  P  H  F  D  I  Q  D  L  M  K  H  M  N  L  T  F  S  V  L  G  K  N  *  M  V  N  A  L  C  N  I  Q  F  M  M  I  V  S  F  N  *  K  V  A  I  H  V </second_frame>
            <third_frame>   T  L  S  S  I  S  L  S  L  S  H  R  D  *  H  L  L  S  Q  P  W  I  *  A  T  R  L  G  L  R  I  S  E  L  S  S  S  S  S  N  K  L :   N  W  T  R  S  *  R  R  N  L  N  L  *  S  T  T  I  G  V  V  S  L  W  T  S  L  I  S  T  M  T  E  K  A  L  I  W  L  A   : G  F  F  R  I  L  V  S  I  C  N  R  *  L  M  L  *  P  I  *  S  G  P  I  I  P  S  T  L  K  K  A  S  K  S  W  L  G  L  L  V  L  L  F  R  G  E  *  P  Q  E  S  C  C  P  V  S  L  V  P  W  F  A  L  K  A  L  L  P  S  :  V  L  L  *  G  Q  R  L  *  R  A  S  T  F  V  R  Q  L  R  N  L  R  P  V  N  T  E  I  S  H  R  M  L  V  C  Q  L  V  L  C  T  R  H  G :   M  I  M  A  I  C  *  L  L  S  T  V  Y  A  H  T  K  I  I  K  L  Y  Q  C  K  R  C  L  K  I  L  L  L  V  N  F  L  E  Q  W  I  *  S  *  R  M  I  L  L  I  H  A  S  L  E  T  V  *  Q  L  L  G  Y  T  K  L  F  L  V  K  A  K  E  A  *  M  V  Y  S   : E  Q  S  S  *  V  T  M  C  L  S  *  T  S  Q  Q  M  H  Q  T  T  Q  R  K  S  *  K  T  S  R  I  F  L  L  K  M  M  L  L  I  F  L  L  I  H  W  H  H  L  F  M  G  I  C  G  *  R  K  Q  L  F  C  S  C  L  V  E  L  K  R  T  *  K  M  G  L  T  *  E   : V  I  *  T  *  *  W  L  V  I  H  L  L  P  S  L  S  C  *  E  Q  L  *  I  L  L  R  *  Q  Y  Q  L  L  V  V  V  L  P  E  L  V  *  Q  L  Q  L  L  L  I  K  K  Q  :  E  K  E  G  *  K  L  V  P  W  Y  L  L  T  E  V  L  F  A  L  M  S  L  I  K  *  M  T  K  I  E  L  P  Y  M  R  L  W  N  S  R  L  *  P  L  L  K  Q  E  F  M  H  P  *  M  L  D  A  V  *  L  Q  L  Q  I  P  Y  M  V  L :   T  T  D  H  *  L  Q  Q  R  T  L  D  F  Q  T  H  C  S  L  V  L  I  C  C  L  L  F  W  I  K  W  I  L  G  L  I  V  K  F  L  S  M  F  C  A  C  I  G  I  V  L  Q  *  M  E  :  V  A  Q  H  *  I  M  I  Q  D  M  K  S  K  M  T  R  M  K  C  P  S  M  L  S  I  I  G  C  Y  M  V  E  I  L  L  G  A  R  R  I  H  *  P  S  S  F  S  R  L  T  F  I  M  Q  K  T  G  S  I  L  S  *  L  M  R :   H  L  I  T  *  L  L  L  M  P  S  L  G  V  P  V  R  M  Q  R :   L  G  E  E  H  F  R  L  L  P  E  L  W  K  Q  L  F  G  S  Q  L  P  M  P  S  *  S  *  E  D  R :   F  *  S  L  M  *  K  L  L  F  K  F  Y  I  L  P  Y  I  I  K  N  *  L  R  W  R  N  V  N  K  R  E  Q  R  N  W  G  R  S  A  V  L  T  M  M  E  V  T  M  L  Q  L  V  N  A  E  P  S  M  M  Q  M  M  N  Q  L  I  M  K  P  E  E  *   : V  K  R  W  K  L  M  I  L  Q  Q  L  R  S  A  H  L  L  R   : D  C  K  H  S  V  Q  H  L  V  G  T  G  T  Y  N  M  W  N  K  F  Q  L  L  M  W  R  M  L  S  T  M  G  R  L  Y  L  T  Q  R  R  R  *  R  N  Y  *  R :   *  W  K  R  K  A  N  C  G  Y  T  V  I  P  M  *  F  T  S  C  K  S  V  Q  L  E  R  S  Q  V  Q  L  S  P  F  *  W  I  V  Q  A  *  L  N  G  G  I  H  H  L  L  L  N  H  S  F  S  L  C  F  *  *  Y  Y  G  I  H  L  F  I  P  T  L  I  F  R  I  *  *  S  T  *  I  L  L  F  L  F  *  G  K  T  K  W  L  M  H  Y  V  I  Y  N  L  *  *  S  S  L  S  I  E  K  L  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55847" stop="55722"/>
                    <exon start="55587" stop="55469"/>
                    <exon start="55188" stop="54980"/>
                    <exon start="53269" stop="53139"/>
                    <exon start="53052" stop="52814"/>
                    <exon start="52719" stop="52483"/>
                    <exon start="52274" stop="52120"/>
                    <exon start="52049" stop="51841"/>
                    <exon start="51753" stop="51588"/>
                    <exon start="51502" stop="51306"/>
                    <exon start="51112" stop="51053"/>
                    <exon start="50968" stop="50876"/>
                    <exon start="50635" stop="50415"/>
                    <exon start="50145" stop="50089"/>
                    <exon start="49998" stop="49857"/>
                    <exon start="49699" stop="49637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2421</number_coding_nucleotides>
                  <number_encoded_amino_acids>807</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSLLHFSLSLTQRLTLTQSAMDLSDEVRATHKRTFLKFFEQTELDTELKKEFESMINNNRRRVIMDLADFYNDREGSDLARRLLQNPSEYMQPLIDALTDMIRTHNPKYLKEGEQVLVGFTGPFVSRRVTPRELLSRFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTEKFTAREYRDITSNVGLPTGSVYPTRDDNGNLLVTEYGLCTYKDHQTLSMQEVPENSAPGQLPRTVDIVVEDDLVDSCKPGDRVAVVGVYKALPSKSQGSMNGVFRTILIGNNVSLLNKSANAPNYTEKVLKDIKNISVKDDAFDLLANSLAPSIYGHLWIKKAVVLLMLGGIEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPGVDRQISEHVLRMHRYRSPIDGGSSTLDNDSRYEEQNDKDEMPVYVKYNRMLHGRNSTRSKKDTLTIQFLKTYIHYAKNRIHPELTDEASDNIATAYAELRSASSNAKTGGGTLPITARTLETIIRLSTAHAKLKLRRQVLKSDVEAALQVLHFAIYHQELTEMEEREQERAKELGKKRSTDHDGGNNASARKRRAEHDADDESADHEAGGVGEAMETDDTPAAEISTSPERLQAFSAALGRHRNLQHVEQIPVADVENVVNNGATVPYSKAEIEKLLKMMEEKGQLWVHSDTNVVYFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55848" e_stop="55722"/>
            <exon e_start="55587" e_stop="55469"/>
            <exon e_start="55188" e_stop="54980"/>
            <exon e_start="53269" e_stop="53139"/>
            <exon e_start="53052" e_stop="52814"/>
            <exon e_start="52719" e_stop="52483"/>
            <exon e_start="52274" e_stop="52120"/>
            <exon e_start="52049" e_stop="51841"/>
            <exon e_start="51753" e_stop="51588"/>
            <exon e_start="51502" e_stop="51306"/>
            <exon e_start="51112" e_stop="51053"/>
            <exon e_start="50968" e_stop="50876"/>
            <exon e_start="50635" e_stop="50415"/>
            <exon e_start="50166" e_stop="50089"/>
            <exon e_start="49998" e_stop="49857"/>
            <exon e_start="49699" e_stop="49349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.983"/>
          <exon-intron don_prob="0.917" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.909" acc_prob="0.943" e_score="0.992"/>
          <exon-intron don_prob="0.929" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.984" acc_prob="0.965" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.672" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="55848" e_stop="55722" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55721" i_stop="55588" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="55587" e_stop="55469" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55468" i_stop="55189" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="55188" e_stop="54980" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.982">
            <gDNA_intron_boundary i_start="54979" i_stop="53270" i_length="1710"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="53269" e_stop="53139" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.909" acc_prob="0.943">
            <gDNA_intron_boundary i_start="53138" i_stop="53053" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="53052" e_stop="52814" e_length="239"/>
          </exon>
          <intron i_serial="5" don_prob="0.929" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52813" i_stop="52720" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="52719" e_stop="52483" e_length="237"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.965">
            <gDNA_intron_boundary i_start="52482" i_stop="52275" i_length="208"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52274" e_stop="52120" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52119" i_stop="52050" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52049" e_stop="51841" e_length="209"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51840" i_stop="51754" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51753" e_stop="51588" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.672" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51587" i_stop="51503" i_length="85"/>
          </intron>
          <exon e_serial="10" e_score="0.985">
            <gDNA_exon_boundary e_start="51502" e_stop="51306" e_length="197"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51305" i_stop="51113" i_length="193"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="51112" e_stop="51053" e_length="60"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51052" i_stop="50969" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="50968" e_stop="50876" e_length="93"/>
          </exon>
          <intron i_serial="12" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50875" i_stop="50636" i_length="240"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="50635" e_stop="50415" e_length="221"/>
          </exon>
          <intron i_serial="13" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50414" i_stop="50167" i_length="248"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="50166" e_stop="50089" e_length="78"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.952">
            <gDNA_intron_boundary i_start="50088" i_stop="49999" i_length="90"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="49998" e_stop="49857" e_length="142"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="0.941">
            <gDNA_intron_boundary i_start="49856" i_stop="49700" i_length="157"/>
          </intron>
          <exon e_serial="16" e_score="0.994">
            <gDNA_exon_boundary e_start="49699" e_stop="49349" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55848" stop="55722"/>
              <exon start="55587" stop="55469"/>
              <exon start="55188" stop="54980"/>
              <exon start="53269" stop="53174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55842" stop="55722"/>
              <exon start="55587" stop="55469"/>
              <exon start="55188" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55143" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52814"/>
              <exon start="52719" stop="52568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55029" stop="54980"/>
              <exon start="53269" stop="53139"/>
              <exon start="53052" stop="52814"/>
              <exon start="52719" stop="52490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52912" stop="52814"/>
              <exon start="52719" stop="52483"/>
              <exon start="52274" stop="52141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52594" stop="52483"/>
              <exon start="52274" stop="52120"/>
              <exon start="52049" stop="51969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52553" stop="52483"/>
              <exon start="52274" stop="52120"/>
              <exon start="52049" stop="51841"/>
              <exon start="51753" stop="51588"/>
              <exon start="51502" stop="51396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52200" stop="52120"/>
              <exon start="52049" stop="51841"/>
              <exon start="51753" stop="51588"/>
              <exon start="51502" stop="51378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51737" stop="51588"/>
              <exon start="51502" stop="51306"/>
              <exon start="51112" stop="51053"/>
              <exon start="50968" stop="50953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51465" stop="51306"/>
              <exon start="51112" stop="51053"/>
              <exon start="50968" stop="50876"/>
              <exon start="50635" stop="50415"/>
              <exon start="50166" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50137" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50128" stop="50089"/>
              <exon start="49998" stop="49857"/>
              <exon start="49699" stop="49349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTCTCTCCTCCATTTCTCTCTCTCTCTCACACAGAGATTAACACTTACTCAGTCAGCCATGGATCTAAGCGACGAGGTTAGGGCTACGCATAAGCGAACTTTCCTCAAGTTCTTCGAACAAACT : GAACTGGACACGGAGCTGAAGAAGGAATTTGAATCTATGATCAACAACAATAGGCGTCGTGTCATTATGGACCTCGCTGATTTCTACAATGACAGAGAAGGCTCTGATTTGGCTCGCAG : GCTTCTTCAGAATCCTAGTGAGTATATGCAACCGTTGATTGATGCTTTAACCGATATGATCCGGACCCATAATCCCAAGTACCTTAAAGAAGGCGAGCAAGTCTTGGTTGGGTTTACTGGTCCTTTTGTTTCGAGGAGAGTAACCCCAAGAGAGCTGTTGTCCCGTTTCATTGGTTCCATGGTTTGCGTTGAAGGCATTGTTACCAAGT : GTTCTCTTGTGAGGCCAAAGGTTGTAAAGAGCGTCCACTTTTGTCCGACAACTGAGAAATTTACGGCCCGTGAATACAGAGATATCACATCGAATGTTGGTCTGCCAACTGGTTCTGTGTACCCGACACGG : GATGATAATGGCAATTTGCTAGTTACTGAGTACGGTTTATGCACATACAAAGATCATCAAACTTTATCAATGCAAGAGGTGCCTGAAAATTCTGCTCCTGGTCAACTTCCTAGAACAGTGGATATAGTCGTAGAGGATGATCTTGTTGATTCATGCAAGCCTGGAGACCGTGTAGCAGTTGTTGGGGTATACAAAGCTCTTCCTAGTAAAAGCCAAGGAAGCATGAATGGTGTATTCAG : AACAATCCTCATAGGTAACAATGTGTCTCTCCTGAACAAGTCAGCAAATGCACCAAACTACACAGAGAAAGTCCTGAAAGACATCAAGAATATTTCTGTTAAAGATGATGCTTTTGATCTTCTTGCTAATTCACTGGCACCATCTATTTATGGGCATTTGTGGATAAAGAAAGCAGTTGTTCTGCTCATGCTTGGTGGAATTGAAAAGAACTTGAAAAATGGGACTCACTTAAGAGG : TGATATAAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAGCTGCTGAGAGCAATTATGAATATTGCTCCGTTAGCAATATCAACTACTGGTCGTGGTTCTTCCGGAGTTGGTTTGACAGCTGCAGTTACTTCTGATCAAGAAACAG : GAGAAAGAAGGCTAGAAGCTGGTGCCATGGTACTTGCTGACAGAGGTGTTGTTTGCATTGATGAGTTTGATAAAATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAACAGCAGACTGTAACCATTGCTAAAGCAGGAATTCATGCATCCTTGAATGCTCGATGCAGTGTAGTTGCAGCTGCAAATCCCATATATGGTTCT : TACGACCGATCATTAACTCCAACAAAGAACATTGGACTTCCAGACTCACTGCTCTCTCGTTTTGATTTGTTGTTTATTGTTCTGGATCAAATGGATCCTGGGGTTGATCGTCAAATTTCTGAGCATGTTCTGCGCATGCATCGGTATCGTTCTCCAATAGATGGAG : GTAGCTCAACACTAGATAATGATTCAAGATATGAAGAGCAAAATGACAAGGATGAAATGCCCGTCTATGTTAAGTATAATCGGATGCTACATGGTAGAAATTCTACTCGGAGCAAGAAGGATACATTGACCATCCAGTTTCTCAAGACTTACATTCATTATGCAAAAAACAGGATCCATCCTGAGCTGACTGATGAG : GCATCTGATAACATAGCTACTGCTTATGCCGAGCTTAGGAGTGCCAGTTCGAATGCAAAG : ACTGGGGGAGGAACACTTCCGATTACTGCCAGAACTTTGGAAACAATTATTCGGCTCTCAACTGCCCATGCCAAGCTGAAGTTGAGAAGACAG : GTTTTGAAGTCTGATGTAGAAGCTGCTCTTCAAGTTCTACATTTTGCCATATATCATCAAGAACTGACTGAGATGGAGGAACGTGAACAAGAGAGAGCAAAGGAATTGGGGAAGAAGCGCAGTACTGACCATGATGGAGGTAACAATGCTTCAGCTCGTAAACGCAGAGCCGAGCATGATGCAGATGATGAATCAGCTGATCATGAAGCCGGAGGAGTAGG : TGTTCTTTTGGAAAGTGGTAGTGAAGCGATGGAAACTGATGATACTCCAGCAGCTGAGATCAGCACATCTCCTGAGAG : ATTGCAAGCATTCAGTGCAGCACTTGGTAGGCACAGGAACTTACAACATGTGGAACAAATTCCAGTTGCTGATGTGGAGAATGTTGTCAACAATGGGGCGACTGTACCTTACTCAAAGGCGGAGATAGAGAAATTATTAAAG : ATGATGGAAGAGAAAGGCCAATTGTGGGTACACAGTGATACCAATGTAGTTTACTTCATGTAAATCGGTCCAATTGGAGCGCTCGCAAGTTCAGTTGTCTCCTTTCTGATGGATTGTCCAAGCCTAACTAAATGGGGGGATACACCATTTGTTATTGAACCATAGCTTCTCTTTATGTTTCTGATAGTATTATGGTATTCATCTATTTATCCCCACTTTGATATTCAGGATCTGATGAAGCACATGAATCTTACTTTTTCTGTTTTAGGGAAAAACTAAATGGTTAATGCATTATGTAATATACAATTTATGATGATCGTCTCTTTCAATTGAAAAGTTGCAATTCACGTT</gDNA_template>
            <first_frame> S  L  S  P  P  F  L  S  L  S  H  T  E  I  N  T  Y  S  V  S  H  G  S  K  R  R  G  *  G  Y  A  *  A  N  F  P  Q  V  L  R  T  N   : *  T  G  H  G  A  E  E  G  I  *  I  Y  D  Q  Q  Q  *  A  S  C  H  Y  G  P  R  *  F  L  Q  *  Q  R  R  L  *  F  G  S  Q  :  A  S  S  E  S  *  *  V  Y  A  T  V  D  *  C  F  N  R  Y  D  P  D  P  *  S  Q  V  P  *  R  R  R  A  S  L  G  W  V  Y  W  S  F  C  F  E  E  S  N  P  K  R  A  V  V  P  F  H  W  F  H  G  L  R  *  R  H  C  Y  Q  V :   F  S  C  E  A  K  G  C  K  E  R  P  L  L  S  D  N  *  E  I  Y  G  P  *  I  Q  R  Y  H  I  E  C  W  S  A  N  W  F  C  V  P  D  T   : G  *  *  W  Q  F  A  S  Y  *  V  R  F  M  H  I  Q  R  S  S  N  F  I  N  A  R  G  A  *  K  F  C  S  W  S  T  S  *  N  S  G  Y  S  R  R  G  *  S  C  *  F  M  Q  A  W  R  P  C  S  S  C  W  G  I  Q  S  S  S  *  *  K  P  R  K  H  E  W  C  I  Q  :  N  N  P  H  R  *  Q  C  V  S  P  E  Q  V  S  K  C  T  K  L  H  R  E  S  P  E  R  H  Q  E  Y  F  C  *  R  *  C  F  *  S  S  C  *  F  T  G  T  I  Y  L  W  A  F  V  D  K  E  S  S  C  S  A  H  A  W  W  N  *  K  E  L  E  K  W  D  S  L  K  R  :  *  Y  K  H  D  D  G  W  *  S  I  C  C  Q  V  S  A  A  E  S  N  Y  E  Y  C  S  V  S  N  I  N  Y  W  S  W  F  F  R  S  W  F  D  S  C  S  Y  F  *  S  R  N  R :   R  K  K  A  R  S  W  C  H  G  T  C  *  Q  R  C  C  L  H  *  *  V  *  *  N  E  *  P  R  S  S  C  H  T  *  G  Y  G  T  A  D  C  N  H  C  *  S  R  N  S  C  I  L  E  C  S  M  Q  C  S  C  S  C  K  S  H  I  W  F   : L  R  P  I  I  N  S  N  K  E  H  W  T  S  R  L  T  A  L  S  F  *  F  V  V  Y  C  S  G  S  N  G  S  W  G  *  S  S  N  F  *  A  C  S  A  H  A  S  V  S  F  S  N  R  W  R :   *  L  N  T  R  *  *  F  K  I  *  R  A  K  *  Q  G  *  N  A  R  L  C  *  V  *  S  D  A  T  W  *  K  F  Y  S  E  Q  E  G  Y  I  D  H  P  V  S  Q  D  L  H  S  L  C  K  K  Q  D  P  S  *  A  D  *  *   : G  I  *  *  H  S  Y  C  L  C  R  A  *  E  C  Q  F  E  C  K   : D  W  G  R  N  T  S  D  Y  C  Q  N  F  G  N  N  Y  S  A  L  N  C  P  C  Q  A  E  V  E  K  T   : G  F  E  V  *  C  R  S  C  S  S  S  S  T  F  C  H  I  S  S  R  T  D  *  D  G  G  T  *  T  R  E  S  K  G  I  G  E  E  A  Q  Y  *  P  *  W  R  *  Q  C  F  S  S  *  T  Q  S  R  A  *  C  R  *  *  I  S  *  S  *  S  R  R  S  R  :  C  S  F  G  K  W  *  *  S  D  G  N  *  *  Y  S  S  S  *  D  Q  H  I  S  *  E  :  I  A  S  I  Q  C  S  T  W  *  A  Q  E  L  T  T  C  G  T  N  S  S  C  *  C  G  E  C  C  Q  Q  W  G  D  C  T  L  L  K  G  G  D  R  E  I  I  K   : D  D  G  R  E  R  P  I  V  G  T  Q  *  Y  Q  C  S  L  L  H  V  N  R  S  N  W  S  A  R  K  F  S  C  L  L  S  D  G  L  S  K  P  N  *  M  G  G  Y  T  I  C  Y  *  T  I  A  S  L  Y  V  S  D  S  I  M  V  F  I  Y  L  S  P  L  *  Y  S  G  S  D  E  A  H  E  S  Y  F  F  C  F  R  E  K  L  N  G  *  C  I  M  *  Y  T  I  Y  D  D  R  L  F  Q  L  K  S  C  N  S  R  </first_frame>
            <second_frame>  H  S  L  L  H  F  S  L  S  L  T  Q  R  L  T  L  T  Q  S  A  M  D  L  S  D  E  V  R  A  T  H  K  R  T  F  L  K  F  F  E  Q  T  :  E  L  D  T  E  L  K  K  E  F  E  S  M  I  N  N  N  R  R  R  V  I  M  D  L  A  D  F  Y  N  D  R  E  G  S  D  L  A  R  R :   L  L  Q  N  P  S  E  Y  M  Q  P  L  I  D  A  L  T  D  M  I  R  T  H  N  P  K  Y  L  K  E  G  E  Q  V  L  V  G  F  T  G  P  F  V  S  R  R  V  T  P  R  E  L  L  S  R  F  I  G  S  M  V  C  V  E  G  I  V  T  K   : C  S  L  V  R  P  K  V  V  K  S  V  H  F  C  P  T  T  E  K  F  T  A  R  E  Y  R  D  I  T  S  N  V  G  L  P  T  G  S  V  Y  P  T  R  :  D  D  N  G  N  L  L  V  T  E  Y  G  L  C  T  Y  K  D  H  Q  T  L  S  M  Q  E  V  P  E  N  S  A  P  G  Q  L  P  R  T  V  D  I  V  V  E  D  D  L  V  D  S  C  K  P  G  D  R  V  A  V  V  G  V  Y  K  A  L  P  S  K  S  Q  G  S  M  N  G  V  F  R :   T  I  L  I  G  N  N  V  S  L  L  N  K  S  A  N  A  P  N  Y  T  E  K  V  L  K  D  I  K  N  I  S  V  K  D  D  A  F  D  L  L  A  N  S  L  A  P  S  I  Y  G  H  L  W  I  K  K  A  V  V  L  L  M  L  G  G  I  E  K  N  L  K  N  G  T  H  L  R  G :   D  I  N  M  M  M  V  G  D  P  S  V  A  K  S  Q  L  L  R  A  I  M  N  I  A  P  L  A  I  S  T  T  G  R  G  S  S  G  V  G  L  T  A  A  V  T  S  D  Q  E  T   : G  E  R  R  L  E  A  G  A  M  V  L  A  D  R  G  V  V  C  I  D  E  F  D  K  M  N  D  Q  D  R  V  A  I  H  E  V  M  E  Q  Q  T  V  T  I  A  K  A  G  I  H  A  S  L  N  A  R  C  S  V  V  A  A  A  N  P  I  Y  G  S  :  Y  D  R  S  L  T  P  T  K  N  I  G  L  P  D  S  L  L  S  R  F  D  L  L  F  I  V  L  D  Q  M  D  P  G  V  D  R  Q  I  S  E  H  V  L  R  M  H  R  Y  R  S  P  I  D  G   : G  S  S  T  L  D  N  D  S  R  Y  E  E  Q  N  D  K  D  E  M  P  V  Y  V  K  Y  N  R  M  L  H  G  R  N  S  T  R  S  K  K  D  T  L  T  I  Q  F  L  K  T  Y  I  H  Y  A  K  N  R  I  H  P  E  L  T  D  E  :  A  S  D  N  I  A  T  A  Y  A  E  L  R  S  A  S  S  N  A  K  :  T  G  G  G  T  L  P  I  T  A  R  T  L  E  T  I  I  R  L  S  T  A  H  A  K  L  K  L  R  R  Q  :  V  L  K  S  D  V  E  A  A  L  Q  V  L  H  F  A  I  Y  H  Q  E  L  T  E  M  E  E  R  E  Q  E  R  A  K  E  L  G  K  K  R  S  T  D  H  D  G  G  N  N  A  S  A  R  K  R  R  A  E  H  D  A  D  D  E  S  A  D  H  E  A  G  G  V  G :   V  L  L  E  S  G  S  E  A  M  E  T  D  D  T  P  A  A  E  I  S  T  S  P  E  R :   L  Q  A  F  S  A  A  L  G  R  H  R  N  L  Q  H  V  E  Q  I  P  V  A  D  V  E  N  V  V  N  N  G  A  T  V  P  Y  S  K  A  E  I  E  K  L  L  K  :  M  M  E  E  K  G  Q  L  W  V  H  S  D  T  N  V  V  Y  F  M  *  I  G  P  I  G  A  L  A  S  S  V  V  S  F  L  M  D  C  P  S  L  T  K  W  G  D  T  P  F  V  I  E  P  *  L  L  F  M  F  L  I  V  L  W  Y  S  S  I  Y  P  H  F  D  I  Q  D  L  M  K  H  M  N  L  T  F  S  V  L  G  K  N  *  M  V  N  A  L  C  N  I  Q  F  M  M  I  V  S  F  N  *  K  V  A  I  H  V </second_frame>
            <third_frame>   T  L  S  S  I  S  L  S  L  S  H  R  D  *  H  L  L  S  Q  P  W  I  *  A  T  R  L  G  L  R  I  S  E  L  S  S  S  S  S  N  K  L :   N  W  T  R  S  *  R  R  N  L  N  L  *  S  T  T  I  G  V  V  S  L  W  T  S  L  I  S  T  M  T  E  K  A  L  I  W  L  A   : G  F  F  R  I  L  V  S  I  C  N  R  *  L  M  L  *  P  I  *  S  G  P  I  I  P  S  T  L  K  K  A  S  K  S  W  L  G  L  L  V  L  L  F  R  G  E  *  P  Q  E  S  C  C  P  V  S  L  V  P  W  F  A  L  K  A  L  L  P  S  :  V  L  L  *  G  Q  R  L  *  R  A  S  T  F  V  R  Q  L  R  N  L  R  P  V  N  T  E  I  S  H  R  M  L  V  C  Q  L  V  L  C  T  R  H  G :   M  I  M  A  I  C  *  L  L  S  T  V  Y  A  H  T  K  I  I  K  L  Y  Q  C  K  R  C  L  K  I  L  L  L  V  N  F  L  E  Q  W  I  *  S  *  R  M  I  L  L  I  H  A  S  L  E  T  V  *  Q  L  L  G  Y  T  K  L  F  L  V  K  A  K  E  A  *  M  V  Y  S   : E  Q  S  S  *  V  T  M  C  L  S  *  T  S  Q  Q  M  H  Q  T  T  Q  R  K  S  *  K  T  S  R  I  F  L  L  K  M  M  L  L  I  F  L  L  I  H  W  H  H  L  F  M  G  I  C  G  *  R  K  Q  L  F  C  S  C  L  V  E  L  K  R  T  *  K  M  G  L  T  *  E   : V  I  *  T  *  *  W  L  V  I  H  L  L  P  S  L  S  C  *  E  Q  L  *  I  L  L  R  *  Q  Y  Q  L  L  V  V  V  L  P  E  L  V  *  Q  L  Q  L  L  L  I  K  K  Q  :  E  K  E  G  *  K  L  V  P  W  Y  L  L  T  E  V  L  F  A  L  M  S  L  I  K  *  M  T  K  I  E  L  P  Y  M  R  L  W  N  S  R  L  *  P  L  L  K  Q  E  F  M  H  P  *  M  L  D  A  V  *  L  Q  L  Q  I  P  Y  M  V  L :   T  T  D  H  *  L  Q  Q  R  T  L  D  F  Q  T  H  C  S  L  V  L  I  C  C  L  L  F  W  I  K  W  I  L  G  L  I  V  K  F  L  S  M  F  C  A  C  I  G  I  V  L  Q  *  M  E  :  V  A  Q  H  *  I  M  I  Q  D  M  K  S  K  M  T  R  M  K  C  P  S  M  L  S  I  I  G  C  Y  M  V  E  I  L  L  G  A  R  R  I  H  *  P  S  S  F  S  R  L  T  F  I  M  Q  K  T  G  S  I  L  S  *  L  M  R :   H  L  I  T  *  L  L  L  M  P  S  L  G  V  P  V  R  M  Q  R :   L  G  E  E  H  F  R  L  L  P  E  L  W  K  Q  L  F  G  S  Q  L  P  M  P  S  *  S  *  E  D  R :   F  *  S  L  M  *  K  L  L  F  K  F  Y  I  L  P  Y  I  I  K  N  *  L  R  W  R  N  V  N  K  R  E  Q  R  N  W  G  R  S  A  V  L  T  M  M  E  V  T  M  L  Q  L  V  N  A  E  P  S  M  M  Q  M  M  N  Q  L  I  M  K  P  E  E  *   : V  F  F  W  K  V  V  V  K  R  W  K  L  M  I  L  Q  Q  L  R  S  A  H  L  L  R   : D  C  K  H  S  V  Q  H  L  V  G  T  G  T  Y  N  M  W  N  K  F  Q  L  L  M  W  R  M  L  S  T  M  G  R  L  Y  L  T  Q  R  R  R  *  R  N  Y  *  R :   *  W  K  R  K  A  N  C  G  Y  T  V  I  P  M  *  F  T  S  C  K  S  V  Q  L  E  R  S  Q  V  Q  L  S  P  F  *  W  I  V  Q  A  *  L  N  G  G  I  H  H  L  L  L  N  H  S  F  S  L  C  F  *  *  Y  Y  G  I  H  L  F  I  P  T  L  I  F  R  I  *  *  S  T  *  I  L  L  F  L  F  *  G  K  T  K  W  L  M  H  Y  V  I  Y  N  L  *  *  S  S  L  S  I  E  K  L  Q  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55847" stop="55722"/>
                    <exon start="55587" stop="55469"/>
                    <exon start="55188" stop="54980"/>
                    <exon start="53269" stop="53139"/>
                    <exon start="53052" stop="52814"/>
                    <exon start="52719" stop="52483"/>
                    <exon start="52274" stop="52120"/>
                    <exon start="52049" stop="51841"/>
                    <exon start="51753" stop="51588"/>
                    <exon start="51502" stop="51306"/>
                    <exon start="51112" stop="51053"/>
                    <exon start="50968" stop="50876"/>
                    <exon start="50635" stop="50415"/>
                    <exon start="50166" stop="50089"/>
                    <exon start="49998" stop="49857"/>
                    <exon start="49699" stop="49637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2442</number_coding_nucleotides>
                  <number_encoded_amino_acids>814</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSLLHFSLSLTQRLTLTQSAMDLSDEVRATHKRTFLKFFEQTELDTELKKEFESMINNNRRRVIMDLADFYNDREGSDLARRLLQNPSEYMQPLIDALTDMIRTHNPKYLKEGEQVLVGFTGPFVSRRVTPRELLSRFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTEKFTAREYRDITSNVGLPTGSVYPTRDDNGNLLVTEYGLCTYKDHQTLSMQEVPENSAPGQLPRTVDIVVEDDLVDSCKPGDRVAVVGVYKALPSKSQGSMNGVFRTILIGNNVSLLNKSANAPNYTEKVLKDIKNISVKDDAFDLLANSLAPSIYGHLWIKKAVVLLMLGGIEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPGVDRQISEHVLRMHRYRSPIDGGSSTLDNDSRYEEQNDKDEMPVYVKYNRMLHGRNSTRSKKDTLTIQFLKTYIHYAKNRIHPELTDEASDNIATAYAELRSASSNAKTGGGTLPITARTLETIIRLSTAHAKLKLRRQVLKSDVEAALQVLHFAIYHQELTEMEEREQERAKELGKKRSTDHDGGNNASARKRRAEHDADDESADHEAGGVGVLLESGSEAMETDDTPAAEISTSPERLQAFSAALGRHRNLQHVEQIPVADVENVVNNGATVPYSKAEIEKLLKMMEEKGQLWVHSDTNVVYFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="62452" PGL_stop="58139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62452" e_stop="61834"/>
            <exon e_start="61309" e_stop="60878"/>
            <exon e_start="60629" e_stop="60456"/>
            <exon e_start="59237" e_stop="59124"/>
            <exon e_start="59033" e_stop="58932"/>
            <exon e_start="58846" e_stop="58780"/>
            <exon e_start="58672" e_stop="58296"/>
            <exon e_start="58221" e_stop="58139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.973"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62452" e_stop="61834" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61309" e_stop="60878" e_length="432"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60877" i_stop="60630" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60629" e_stop="60456" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60455" i_stop="59238" i_length="1218"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59237" e_stop="59124" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59123" i_stop="59034" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59033" e_stop="58932" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.879" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58846" e_stop="58780" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="58672" e_stop="58296" e_length="377"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58295" i_stop="58222" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.940">
            <gDNA_exon_boundary e_start="58221" e_stop="58139" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62452" stop="61834"/>
              <exon start="61309" stop="61071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62447" stop="61866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="61834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="61995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62384" stop="61834"/>
              <exon start="61309" stop="61030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62368" stop="62026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62347" stop="61834"/>
              <exon start="61309" stop="61248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61834"/>
              <exon start="61309" stop="61252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61856" stop="61834"/>
              <exon start="61309" stop="60878"/>
              <exon start="60629" stop="60523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61309" stop="60878"/>
              <exon start="60629" stop="60530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61297" stop="60878"/>
              <exon start="60629" stop="60500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61255" stop="60878"/>
              <exon start="60629" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61241" stop="60878"/>
              <exon start="60629" stop="60456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61058" stop="60878"/>
              <exon start="60629" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61058" stop="60878"/>
              <exon start="60629" stop="60456"/>
              <exon start="59237" stop="59133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61055" stop="60878"/>
              <exon start="60629" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61048" stop="60878"/>
              <exon start="60629" stop="60456"/>
              <exon start="59237" stop="59132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60979" stop="60878"/>
              <exon start="60629" stop="60456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60612" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60611" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60562" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432283" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60553" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58296"/>
              <exon start="58221" stop="58139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60494" stop="60456"/>
              <exon start="59237" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59165" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59158" stop="59124"/>
              <exon start="59033" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59026" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59024" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58969" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58963" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58956" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58936" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58932" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGTTTCTCTCTTTCTGTACAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG : ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAGCGGATTTGATGCTTGCTGGTGGAACTGAAGCTGCCATAATACCTATTGGTTTAGGAGGTTTTGTGGCATGCAGAGCTTTGTCTCAAAGAAATGATGATCCACAAACTGCTTCCAGGCCGTGGGACAAAGAAAGAGATGGATTTGTTATGGGAGAGGGGGCTGGAATCTTG : GTGATGGAAAGTTTGGAGCATGCAATGAAACGAGGAGCGCCAATAATTGCAGAGTATTTGGGTGGTGCAGTTAATTGTGATGCTTATCACATGACCGATCCCCGAGCTGATGGTCTTGGTGTTTCTTCATGTATTCTTAGCAGCCTTGAAGATGCTGGAGTGTCACCAGAAGAG : GTTAACTACATTAATGCTCATGCAACTTCTACCATTGTTGGTGATCTAGCCGAAATAAATGCTGTTAAGAAGGTTTTCAAGACCACTACAGGAATCAAAATGAATGCAACCAAG : TCTATGATAGGGCATTGCCTCGGTGCTGCTGGTGGTCTGGAAGCTATTGCAACAATTAAAGCTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC : AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG : CTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACAACTCTCTGATGGCACCT : GTTTTCGAAAAAAAAATATCTAGTTAACCTGTAAGCTGTATAAACAGCCATATTCACAACTATACTCGTCGCTACTAAATTAA</gDNA_template>
            <first_frame> L  G  F  S  L  S  V  Q  A  Q  N  T  H  S  L  S  L  S  K  N  S  S  N  T  L  A  S  L  T  S  K  S  F  L  L  L  L  L  L  L  L  L  A  P  P  P  Q  I  *  K  P  I  S  V  N  N  G  S  N  P  I  S  I  I  S  S  V  S  T  R  T  S  T  K  K  H  P  P  V  H  Q  C  E  V  I  G  C  *  K  S  A  F  N  S  N  S  F  C  I  Y  C  F  C  S  K  K  R  E  R  P  K  E  K  G  C  Y  N  W  D  G  S  C  F  C  V  W  E  *  C  R  Y  L  L  *  Q  T  F  G  W  *  K  W  D  F  A  Y  *  S  F  *  C  F  *  I  S  Y  E  I  W  G  T  N  S  W  V  Y  I  *  R  V  Y  *  W  E  E  *  *  E  A  *  *  L  F  K  V  C  H  C  C  W  Q  E  S  F  G  K  C  R  S  W  W  *  *  I  R  K   : D  *  *  R  E  S  R  C  S  C  R  N  R  N  G  W  S  Y  S  F  L  R  W  C  T  K  P  N  *  K  G  S  Q  E  N  Y  S  I  F  C  T  I  C  H  N  K  H  G  F  C  F  A  W  Y  *  S  W  F  Y  G  T  K  L  L  N  L  N  C  L  C  Y  L  Q  L  L  F  L  C  C  R  *  S  H  P  *  R  *  S  G  F  D  A  C  W  W  N  *  S  C  H  N  T  Y  W  F  R  R  F  C  G  M  Q  S  F  V  S  K  K  *  *  S  T  N  C  F  Q  A  V  G  Q  R  K  R  W  I  C  Y  G  R  G  G  W  N  L   : G  D  G  K  F  G  A  C  N  E  T  R  S  A  N  N  C  R  V  F  G  W  C  S  *  L  *  C  L  S  H  D  R  S  P  S  *  W  S  W  C  F  F  M  Y  S  *  Q  P  *  R  C  W  S  V  T  R  R   : G  *  L  H  *  C  S  C  N  F  Y  H  C  W  *  S  S  R  N  K  C  C  *  E  G  F  Q  D  H  Y  R  N  Q  N  E  C  N  Q   : V  Y  D  R  A  L  P  R  C  C  W  W  S  G  S  Y  C  N  N  *  S  Y  Y  N  R  L  G  A  S  F  N  *  P  I   : Q  S  *  A  F  S  G  I  *  Y  C  S  K  Q  K  T  A  A  *  S  E  C  C :   Y  L  Q  F  L  W  F  W  W  P  Q  L  C  R  C  L  F  C  I  Q  A  L  I  Q  L  S  L  G  R  A  I  F  W  S  S  T  G  G  *  C  D  T  H  C  L  F  H  L  R  V  G  N  L  L  G  A  A  R  E  E  Q  L  S  I  L  F  M  Y  *  *  S  L  A  C  S  F  I  A  M  N  I  F  T  F  H  S  L  N  *  L  G  P  S  *  F  G  *  T  T  M  P  S  V  L  N  Y  A  R  D  L  K  D  D  M  I  F  *  D  *  Q  L  S  D  G  T   : C  F  R  K  K  N  I  *  L  T  C  K  L  Y  K  Q  P  Y  S  Q  L  Y  S  S  L  L  N  * </first_frame>
            <second_frame>  L  V  S  L  F  L  Y  K  H  K  T  H  T  P  F  L  S  L  K  I  V  V  I  H  S  H  R  *  H  R  K  A  F  C  C  C  F  F  F  F  F  L  L  R  H  L  K  S  E  N  P  F  Q  L  T  M  E  A  I  Q  S  L  S  F  R  P  S  P  L  E  P  L  R  K  N  I  P  Q  F  T  N  V  R  S  L  G  A  K  R  V  P  L  T  V  T  A  S  A  S  T  V  S  A  P  K  R  E  K  D  P  K  K  R  V  V  I  T  G  T  G  L  V  S  V  F  G  N  D  A  D  T  Y  Y  D  R  L  L  A  G  E  S  G  I  S  L  I  D  R  F  D  A  S  K  F  P  T  R  F  G  G  Q  I  R  G  F  T  S  E  G  Y  I  D  G  K  N  D  R  R  L  D  D  C  L  R  Y  A  I  V  A  G  K  K  A  L  E  N  A  D  L  G  G  D  R  L  E  K  :  I  D  K  E  R  A  G  V  L  V  G  T  G  M  G  G  L  T  V  F  S  D  G  V  Q  N  L  I  E  K  G  H  R  K  I  T  P  F  F  V  P  Y  A  I  T  N  M  G  S  A  L  L  G  I  D  L  G  F  M  G  P  N  Y  S  I  S  T  A  C  A  T  S  N  Y  C  F  Y  A  A  A  N  H  I  R  R  G  E  A  D  L  M  L  A  G  G  T  E  A  A  I  I  P  I  G  L  G  G  F  V  A  C  R  A  L  S  Q  R  N  D  D  P  Q  T  A  S  R  P  W  D  K  E  R  D  G  F  V  M  G  E  G  A  G  I  L  :  V  M  E  S  L  E  H  A  M  K  R  G  A  P  I  I  A  E  Y  L  G  G  A  V  N  C  D  A  Y  H  M  T  D  P  R  A  D  G  L  G  V  S  S  C  I  L  S  S  L  E  D  A  G  V  S  P  E  E  :  V  N  Y  I  N  A  H  A  T  S  T  I  V  G  D  L  A  E  I  N  A  V  K  K  V  F  K  T  T  T  G  I  K  M  N  A  T  K  :  S  M  I  G  H  C  L  G  A  A  G  G  L  E  A  I  A  T  I  K  A  I  T  T  G  W  V  H  P  S  I  N  Q  F  :  N  P  E  P  S  V  E  F  D  T  V  P  N  K  K  Q  Q  H  E  V  N  V   : A  I  S  N  S  F  G  F  G  G  H  N  S  V  V  A  F  S  A  F  K  P  *  F  S  S  V  *  V  E  Q  S  S  G  V  V  Q  G  V  N  V  I  H  I  V  C  F  I  S  V  W  E  T  C  W  A  Q  R  E  R  N  N  C  P  F  F  L  C  T  N  N  L  *  L  V  V  L  *  Q  *  T  F  S  L  F  I  P  *  I  S  L  D  L  H  S  L  V  K  Q  Q  C  H  Q  F  *  I  M  Q  E  I  *  K  M  I  *  S  F  E  I  N  N  S  L  M  A  P  :  V  F  E  K  K  I  S  S  *  P  V  S  C  I  N  S  H  I  H  N  Y  T  R  R  Y  *  I   </second_frame>
            <third_frame>   W  F  L  S  F  C  T  S  T  K  H  T  L  P  F  S  L  *  K  *  *  *  Y  T  R  I  V  N  I  E  K  L  F  A  A  A  S  S  S  S  S  C  S  A  T  S  N  L  K  T  H  F  S  *  Q  W  K  Q  S  N  L  Y  H  F  V  R  L  H  S  N  L  Y  E  K  T  S  P  S  S  P  M  *  G  H  W  V  L  K  E  C  L  *  Q  *  Q  L  L  H  L  L  F  L  L  Q  K  E  R  K  T  Q  R  K  G  L  L  *  L  G  R  V  L  F  L  C  L  G  M  M  P  I  L  T  M  T  D  F  W  L  V  K  V  G  F  R  L  L  I  V  L  M  L  L  N  F  L  R  D  L  G  D  K  F  V  G  L  H  L  K  G  I  L  M  G  R  M  I  G  G  L  M  I  V  *  G  M  P  L  L  L  A  R  K  L  W  K  M  Q  I  L  V  V  I  D  *  K  R :   L  I  K  R  E  Q  V  F  L  *  E  Q  E  W  V  V  L  Q  F  S  Q  M  V  Y  K  T  *  L  K  R  V  T  G  K  L  L  H  F  L  Y  H  M  P  *  Q  T  W  V  L  L  C  L  V  L  I  L  V  L  W  D  Q  T  T  Q  S  Q  L  L  V  L  P  P  I  T  V  F  M  L  P  L  I  T  S  V  E  V  K  R  I  *  C  L  L  V  E  L  K  L  P  *  Y  L  L  V  *  E  V  L  W  H  A  E  L  C  L  K  E  M  M  I  H  K  L  L  P  G  R  G  T  K  K  E  M  D  L  L  W  E  R  G  L  E  S  W :   *  W  K  V  W  S  M  Q  *  N  E  E  R  Q  *  L  Q  S  I  W  V  V  Q  L  I  V  M  L  I  T  *  P  I  P  E  L  M  V  L  V  F  L  H  V  F  L  A  A  L  K  M  L  E  C  H  Q  K  R :   L  T  T  L  M  L  M  Q  L  L  P  L  L  V  I  *  P  K  *  M  L  L  R  R  F  S  R  P  L  Q  E  S  K  *  M  Q  P  S :   L  *  *  G  I  A  S  V  L  L  V  V  W  K  L  L  Q  Q  L  K  L  L  Q  P  A  G  C  I  L  Q  L  T  N  S :   I  L  S  L  Q  W  N  L  I  L  F  Q  T  K  N  S  S  M  K  *  M  L  :  L  S  P  I  P  L  V  L  V  A  T  T  L  S  L  P  F  L  H  S  S  L  N  S  A  Q  F  R  *  S  N  L  L  E  *  Y  R  G  L  M  *  Y  T  L  S  V  S  S  P  C  G  K  L  A  G  R  S  E  R  G  T  I  V  H  S  F  Y  V  L  I  I  F  S  L  *  F  Y  S  N  E  H  F  H  F  S  F  L  K  L  A  W  T  F  I  V  W  L  N  N  N  A  I  S  F  E  L  C  K  R  F  E  R  *  Y  D  L  L  R  L  T  T  L  *  W  H  L :   F  S  K  K  K  Y  L  V  N  L  *  A  V  *  T  A  I  F  T  T  I  L  V  A  T  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62367" stop="61834"/>
                    <exon start="61309" stop="60878"/>
                    <exon start="60629" stop="60456"/>
                    <exon start="59237" stop="59124"/>
                    <exon start="59033" stop="58932"/>
                    <exon start="58846" stop="58780"/>
                    <exon start="58672" stop="58605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKAFCCCFFFFFLLRHLKSENPFQLTMEAIQSLSFRPSPLEPLRKNIPQFTNVRSLGAKRVPLTVTASASTVSAPKREKDPKKRVVITGTGLVSVFGNDADTYYDRLLAGESGISLIDRFDASKFPTRFGGQIRGFTSEGYIDGKNDRRLDDCLRYAIVAGKKALENADLGGDRLEKIDKERAGVLVGTGMGGLTVFSDGVQNLIEKGHRKITPFFVPYAITNMGSALLGIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKERDGFVMGEGAGILVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCILSSLEDAGVSPEEVNYINAHATSTIVGDLAEINAVKKVFKTTTGIKMNATKSMIGHCLGAAGGLEAIATIKAITTGWVHPSINQFNPEPSVEFDTVPNKKQQHEVNVAISNSFGFGGHNSVVAFSAFKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62452" e_stop="61834"/>
            <exon e_start="61309" e_stop="61048"/>
            <exon e_start="58972" e_stop="58932"/>
            <exon e_start="58846" e_stop="58780"/>
            <exon e_start="58672" e_stop="58304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62452" e_stop="61834" e_length="619"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61833" i_stop="61310" i_length="524"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61309" e_stop="61048" e_length="262"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61047" i_stop="58973" i_length="2075"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58972" e_stop="58932" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.879" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58931" i_stop="58847" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58846" e_stop="58780" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="58779" i_stop="58673" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="0.926">
            <gDNA_exon_boundary e_start="58672" e_stop="58304" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62452" stop="61834"/>
              <exon start="61309" stop="61071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62447" stop="61866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="61834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62431" stop="61995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62368" stop="62026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62347" stop="61834"/>
              <exon start="61309" stop="61248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61834"/>
              <exon start="61309" stop="61252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61907" stop="61834"/>
              <exon start="61309" stop="61048"/>
              <exon start="58972" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58969" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58963" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58956" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58936" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58932" stop="58932"/>
              <exon start="58846" stop="58780"/>
              <exon start="58672" stop="58339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGTTTCTCTCTTTCTGTACAAGCACAAAACACACACTCCCTTTCTCTCTCTAAAAATAGTAGTAATACACTCGCATCGTTAACATCGAAAAGCTTTTTGCTGCTGCTTCTTCTTCTTCTTCTTGCTCCGCCACCTCAAATCTGAAAACCCATTTCAGTTAACAATGGAAGCAATCCAATCTCTATCATTTCGTCCGTCTCCACTCGAACCTCTACGAAAAAACATCCCCCAGTTCACCAATGTGAGGTCATTGGGTGCTAAAAGAGTGCCTTTAACAGTAACAGCTTCTGCATCTACTGTTTCTGCTCCAAAAAGAGAGAAAGACCCAAAGAAAAGGGTTGTTATAACTGGGACGGGTCTTGTTTCTGTGTTTGGGAATGATGCCGATACTTACTATGACAGACTTTTGGCTGGTGAAAGTGGGATTTCGCTTATTGATCGTTTTGATGCTTCTAAATTTCCTACGAGATTTGGGGGACAAATTCGTGGGTTTACATCTGAAGGGTATATTGATGGGAAGAATGATAGGAGGCTTGATGATTGTTTAAGGTATGCCATTGTTGCTGGCAAGAAAGCTTTGGAAAATGCAGATCTTGGTGGTGATAGATTAGAAAAG : ATTGATAAAGAGAGAGCAGGTGTTCTTGTAGGAACAGGAATGGGTGGTCTTACAGTTTTCTCAGATGGTGTACAAAACCTAATTGAAAAGGGTCACAGGAAAATTACTCCATTTTTTGTACCATATGCCATAACAAACATGGGTTCTGCTTTGCTTGGTATTGATCTTGGTTTTATGGGACCAAACTACTCAATCTCAACTGCTTGTGCTACCTCCAATTACTGTTTTTATGCTGCCGCTAATCACATCCGTAGAGGTGAAG : CTATTACAACCGGCTGGGTGCATCCTTCAATTAACCAATTC : AATCCTGAGCCTTCAGTGGAATTTGATACTGTTCCAAACAAAAAACAGCAGCATGAAGTGAATGTTG : CTATCTCCAATTCCTTTGGTTTTGGTGGCCACAACTCTGTCGTTGCCTTTTCTGCATTCAAGCCTTAATTCAGCTCAGTTTAGGTAGAGCAATCTTCTGGAGTAGTACAGGGGGTTAATGTGATACACATTGTCTGTTTCATCTCCGTGTGGGAAACTTGCTGGGCGCAGCGAGAGAGGAACAATTGTCCATTCTTTTTATGTACTAATAATCTTTAGCTTGTAGTTTTATAGCAATGAACATTTTCACTTTTCATTCCTTAAATTAGCTTGGACCTTCATAGTTTGGTTAAACAACAATGCCATCAGTTTTGAATTATGCAAGAGATTTGAAAGATGATATGATCTTTTGAGATTAACAACTCTCTGA</gDNA_template>
            <first_frame> L  G  F  S  L  S  V  Q  A  Q  N  T  H  S  L  S  L  S  K  N  S  S  N  T  L  A  S  L  T  S  K  S  F  L  L  L  L  L  L  L  L  L  A  P  P  P  Q  I  *  K  P  I  S  V  N  N  G  S  N  P  I  S  I  I  S  S  V  S  T  R  T  S  T  K  K  H  P  P  V  H  Q  C  E  V  I  G  C  *  K  S  A  F  N  S  N  S  F  C  I  Y  C  F  C  S  K  K  R  E  R  P  K  E  K  G  C  Y  N  W  D  G  S  C  F  C  V  W  E  *  C  R  Y  L  L  *  Q  T  F  G  W  *  K  W  D  F  A  Y  *  S  F  *  C  F  *  I  S  Y  E  I  W  G  T  N  S  W  V  Y  I  *  R  V  Y  *  W  E  E  *  *  E  A  *  *  L  F  K  V  C  H  C  C  W  Q  E  S  F  G  K  C  R  S  W  W  *  *  I  R  K   : D  *  *  R  E  S  R  C  S  C  R  N  R  N  G  W  S  Y  S  F  L  R  W  C  T  K  P  N  *  K  G  S  Q  E  N  Y  S  I  F  C  T  I  C  H  N  K  H  G  F  C  F  A  W  Y  *  S  W  F  Y  G  T  K  L  L  N  L  N  C  L  C  Y  L  Q  L  L  F  L  C  C  R  *  S  H  P  *  R  *  S :   Y  Y  N  R  L  G  A  S  F  N  *  P  I   : Q  S  *  A  F  S  G  I  *  Y  C  S  K  Q  K  T  A  A  *  S  E  C  C :   Y  L  Q  F  L  W  F  W  W  P  Q  L  C  R  C  L  F  C  I  Q  A  L  I  Q  L  S  L  G  R  A  I  F  W  S  S  T  G  G  *  C  D  T  H  C  L  F  H  L  R  V  G  N  L  L  G  A  A  R  E  E  Q  L  S  I  L  F  M  Y  *  *  S  L  A  C  S  F  I  A  M  N  I  F  T  F  H  S  L  N  *  L  G  P  S  *  F  G  *  T  T  M  P  S  V  L  N  Y  A  R  D  L  K  D  D  M  I  F  *  D  *  Q  L  S   </first_frame>
            <second_frame>  L  V  S  L  F  L  Y  K  H  K  T  H  T  P  F  L  S  L  K  I  V  V  I  H  S  H  R  *  H  R  K  A  F  C  C  C  F  F  F  F  F  L  L  R  H  L  K  S  E  N  P  F  Q  L  T  M  E  A  I  Q  S  L  S  F  R  P  S  P  L  E  P  L  R  K  N  I  P  Q  F  T  N  V  R  S  L  G  A  K  R  V  P  L  T  V  T  A  S  A  S  T  V  S  A  P  K  R  E  K  D  P  K  K  R  V  V  I  T  G  T  G  L  V  S  V  F  G  N  D  A  D  T  Y  Y  D  R  L  L  A  G  E  S  G  I  S  L  I  D  R  F  D  A  S  K  F  P  T  R  F  G  G  Q  I  R  G  F  T  S  E  G  Y  I  D  G  K  N  D  R  R  L  D  D  C  L  R  Y  A  I  V  A  G  K  K  A  L  E  N  A  D  L  G  G  D  R  L  E  K  :  I  D  K  E  R  A  G  V  L  V  G  T  G  M  G  G  L  T  V  F  S  D  G  V  Q  N  L  I  E  K  G  H  R  K  I  T  P  F  F  V  P  Y  A  I  T  N  M  G  S  A  L  L  G  I  D  L  G  F  M  G  P  N  Y  S  I  S  T  A  C  A  T  S  N  Y  C  F  Y  A  A  A  N  H  I  R  R  G  E   : A  I  T  T  G  W  V  H  P  S  I  N  Q  F  :  N  P  E  P  S  V  E  F  D  T  V  P  N  K  K  Q  Q  H  E  V  N  V   : A  I  S  N  S  F  G  F  G  G  H  N  S  V  V  A  F  S  A  F  K  P  *  F  S  S  V  *  V  E  Q  S  S  G  V  V  Q  G  V  N  V  I  H  I  V  C  F  I  S  V  W  E  T  C  W  A  Q  R  E  R  N  N  C  P  F  F  L  C  T  N  N  L  *  L  V  V  L  *  Q  *  T  F  S  L  F  I  P  *  I  S  L  D  L  H  S  L  V  K  Q  Q  C  H  Q  F  *  I  M  Q  E  I  *  K  M  I  *  S  F  E  I  N  N  S  L  </second_frame>
            <third_frame>   W  F  L  S  F  C  T  S  T  K  H  T  L  P  F  S  L  *  K  *  *  *  Y  T  R  I  V  N  I  E  K  L  F  A  A  A  S  S  S  S  S  C  S  A  T  S  N  L  K  T  H  F  S  *  Q  W  K  Q  S  N  L  Y  H  F  V  R  L  H  S  N  L  Y  E  K  T  S  P  S  S  P  M  *  G  H  W  V  L  K  E  C  L  *  Q  *  Q  L  L  H  L  L  F  L  L  Q  K  E  R  K  T  Q  R  K  G  L  L  *  L  G  R  V  L  F  L  C  L  G  M  M  P  I  L  T  M  T  D  F  W  L  V  K  V  G  F  R  L  L  I  V  L  M  L  L  N  F  L  R  D  L  G  D  K  F  V  G  L  H  L  K  G  I  L  M  G  R  M  I  G  G  L  M  I  V  *  G  M  P  L  L  L  A  R  K  L  W  K  M  Q  I  L  V  V  I  D  *  K  R :   L  I  K  R  E  Q  V  F  L  *  E  Q  E  W  V  V  L  Q  F  S  Q  M  V  Y  K  T  *  L  K  R  V  T  G  K  L  L  H  F  L  Y  H  M  P  *  Q  T  W  V  L  L  C  L  V  L  I  L  V  L  W  D  Q  T  T  Q  S  Q  L  L  V  L  P  P  I  T  V  F  M  L  P  L  I  T  S  V  E  V  K  :  L  L  Q  P  A  G  C  I  L  Q  L  T  N  S :   I  L  S  L  Q  W  N  L  I  L  F  Q  T  K  N  S  S  M  K  *  M  L  :  L  S  P  I  P  L  V  L  V  A  T  T  L  S  L  P  F  L  H  S  S  L  N  S  A  Q  F  R  *  S  N  L  L  E  *  Y  R  G  L  M  *  Y  T  L  S  V  S  S  P  C  G  K  L  A  G  R  S  E  R  G  T  I  V  H  S  F  Y  V  L  I  I  F  S  L  *  F  Y  S  N  E  H  F  H  F  S  F  L  K  L  A  W  T  F  I  V  W  L  N  N  N  A  I  S  F  E  L  C  K  R  F  E  R  *  Y  D  L  L  R  L  T  T  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62367" stop="61834"/>
                    <exon start="61309" stop="61048"/>
                    <exon start="58972" stop="58932"/>
                    <exon start="58846" stop="58780"/>
                    <exon start="58672" stop="58605"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKAFCCCFFFFFLLRHLKSENPFQLTMEAIQSLSFRPSPLEPLRKNIPQFTNVRSLGAKRVPLTVTASASTVSAPKREKDPKKRVVITGTGLVSVFGNDADTYYDRLLAGESGISLIDRFDASKFPTRFGGQIRGFTSEGYIDGKNDRRLDDCLRYAIVAGKKALENADLGGDRLEKIDKERAGVLVGTGMGGLTVFSDGVQNLIEKGHRKITPFFVPYAITNMGSALLGIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEAITTGWVHPSINQFNPEPSVEFDTVPNKKQQHEVNVAISNSFGFGGHNSVVAFSAFKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60141" e_stop="59577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="60141" e_stop="59577" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60141" stop="59577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTGTGTTTTTGTTTTAGGCTGAATGGAAGATATTGTGCAACGAGTGAACCTTCATTCCTTAATAATAAAAAAAAAATTACTTGTGACATTATAGTCTTTCCATGTCAATTTTATGCCCATAGACTCTCATCCATGTCCCATTGCCTCTTAAAGAAAAAAATGCTACCTCCCATGTTAGCTTTATTCTAAATTTTAGATTCCAAGTAAAGATTACTCCCTCTCTCTTTAGTAGATAAAGACATCCCCTTATTGAGAGTAAACAAAAGGTTACTATTCAATTTTAATCATCAAAGACACATGTTAAAACTGCTGGCGATCAGAAAAAATTGGATTCTTTCACCATTAATAAAATGCACCTAAAATGCTTGTACAGTTCATCCTAGATACTAAGCCCTATCACTGGAGCTTTAGTGTCTTCTTCTCAGATCTGATTTTAACAATACCAACCTTCTCACCTTGTTGCATCGAAAGAAGTAACACAGACTTTGCTTTGAACCACTATGCCCTAAGCTACAGCAATTGTCTAGAGTCAGCATGATATCTGTTGATGAATTAATAGT</gDNA_template>
            <first_frame> F  L  C  V  F  V  L  G  *  M  E  D  I  V  Q  R  V  N  L  H  S  L  I  I  K  K  K  L  L  V  T  L  *  S  F  H  V  N  F  M  P  I  D  S  H  P  C  P  I  A  S  *  R  K  K  C  Y  L  P  C  *  L  Y  S  K  F  *  I  P  S  K  D  Y  S  L  S  L  *  *  I  K  T  S  P  Y  *  E  *  T  K  G  Y  Y  S  I  L  I  I  K  D  T  C  *  N  C  W  R  S  E  K  I  G  F  F  H  H  *  *  N  A  P  K  M  L  V  Q  F  I  L  D  T  K  P  Y  H  W  S  F  S  V  F  F  S  D  L  I  L  T  I  P  T  F  S  P  C  C  I  E  R  S  N  T  D  F  A  L  N  H  Y  A  L  S  Y  S  N  C  L  E  S  A  *  Y  L  L  M  N  *  *  </first_frame>
            <second_frame>  F  C  V  F  L  F  *  A  E  W  K  I  L  C  N  E  *  T  F  I  P  *  *  *  K  K  N  Y  L  *  H  Y  S  L  S  M  S  I  L  C  P  *  T  L  I  H  V  P  L  P  L  K  E  K  N  A  T  S  H  V  S  F  I  L  N  F  R  F  Q  V  K  I  T  P  S  L  F  S  R  *  R  H  P  L  I  E  S  K  Q  K  V  T  I  Q  F  *  S  S  K  T  H  V  K  T  A  G  D  Q  K  K  L  D  S  F  T  I  N  K  M  H  L  K  C  L  Y  S  S  S  *  I  L  S  P  I  T  G  A  L  V  S  S  S  Q  I  *  F  *  Q  Y  Q  P  S  H  L  V  A  S  K  E  V  T  Q  T  L  L  *  T  T  M  P  *  A  T  A  I  V  *  S  Q  H  D  I  C  *  *  I  N  S </second_frame>
            <third_frame>   S  V  C  F  C  F  R  L  N  G  R  Y  C  A  T  S  E  P  S  F  L  N  N  K  K  K  I  T  C  D  I  I  V  F  P  C  Q  F  Y  A  H  R  L  S  S  M  S  H  C  L  L  K  K  K  M  L  P  P  M  L  A  L  F  *  I  L  D  S  K  *  R  L  L  P  L  S  L  V  D  K  D  I  P  L  L  R  V  N  K  R  L  L  F  N  F  N  H  Q  R  H  M  L  K  L  L  A  I  R  K  N  W  I  L  S  P  L  I  K  C  T  *  N  A  C  T  V  H  P  R  Y  *  A  L  S  L  E  L  *  C  L  L  L  R  S  D  F  N  N  T  N  L  L  T  L  L  H  R  K  K  *  H  R  L  C  F  E  P  L  C  P  K  L  Q  Q  L  S  R  V  S  M  I  S  V  D  E  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="61955" PGL_stop="62238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61955" e_stop="62238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="61955" e_stop="62238" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61955" stop="62238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAACCCACGAATTTGTCCCCCAAATCTCGTAGGAAATTTAGAAGCATCAAAACGATCAATAAGCGAAATCCCACTTTCACCAGCCAAAAGTCTGTCATAGTAAGTATCGGCATCATTCCCAAACACAGAAACAAGACCCGTCCCAGTTATAACAACCCTTTTCTTTGGGTCTTTCTCTCTTTTTGGAGCAGAAACAGTAGATGCAGAAGCTGTTACTGTTAAAGGCACTCTTTTAGCACCCAATGACCTCACATTGGTGAACTGGGGGATGTTTTTTCGTAG</gDNA_template>
            <first_frame> V  N  P  R  I  C  P  P  N  L  V  G  N  L  E  A  S  K  R  S  I  S  E  I  P  L  S  P  A  K  S  L  S  *  *  V  S  A  S  F  P  N  T  E  T  R  P  V  P  V  I  T  T  L  F  F  G  S  F  S  L  F  G  A  E  T  V  D  A  E  A  V  T  V  K  G  T  L  L  A  P  N  D  L  T  L  V  N  W  G  M  F  F  R   </first_frame>
            <second_frame>  *  T  H  E  F  V  P  Q  I  S  *  E  I  *  K  H  Q  N  D  Q  *  A  K  S  H  F  H  Q  P  K  V  C  H  S  K  Y  R  H  H  S  Q  T  Q  K  Q  D  P  S  Q  L  *  Q  P  F  S  L  G  L  S  L  F  L  E  Q  K  Q  *  M  Q  K  L  L  L  L  K  A  L  F  *  H  P  M  T  S  H  W  *  T  G  G  C  F  F  V  </second_frame>
            <third_frame>   K  P  T  N  L  S  P  K  S  R  R  K  F  R  S  I  K  T  I  N  K  R  N  P  T  F  T  S  Q  K  S  V  I  V  S  I  G  I  I  P  K  H  R  N  K  T  R  P  S  Y  N  N  P  F  L  W  V  F  L  S  F  W  S  R  N  S  R  C  R  S  C  Y  C  *  R  H  S  F  S  T  Q  *  P  H  I  G  E  L  G  D  V  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61957" stop="62178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPTNLSPKSRRKFRSIKTINKRNPTFTSQKSVIVSIGIIPKHRNKTRPSYNNPFLWVFLSFWSRNSRCRSCYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="69188" PGL_stop="66584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69188" e_stop="68938"/>
            <exon e_start="68790" e_stop="68725"/>
            <exon e_start="68537" e_stop="68463"/>
            <exon e_start="67990" e_stop="67928"/>
            <exon e_start="67768" e_stop="67709"/>
            <exon e_start="67565" e_stop="67476"/>
            <exon e_start="67394" e_stop="67287"/>
            <exon e_start="67091" e_stop="66969"/>
            <exon e_start="66857" e_stop="66584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.152" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="69188" e_stop="68938" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="68937" i_stop="68791" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68790" e_stop="68725" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68724" i_stop="68538" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68537" e_stop="68463" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68462" i_stop="67991" i_length="472"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67990" e_stop="67928" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.152">
            <gDNA_intron_boundary i_start="67927" i_stop="67769" i_length="159"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67768" e_stop="67709" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.845" acc_prob="0.933">
            <gDNA_intron_boundary i_start="67708" i_stop="67566" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67565" e_stop="67476" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67394" e_stop="67287" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67091" e_stop="66969" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111"/>
          </intron>
          <exon e_serial="9" e_score="0.996">
            <gDNA_exon_boundary e_start="66857" e_stop="66584" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69188" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69185" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69170" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277696" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69168" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69165" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="67066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69164" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69159" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69157" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279068" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69156" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69154" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69154" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="67057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69152" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69152" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69152" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="67066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69151" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="67062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69150" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279263" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69150" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69149" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69147" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69147" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69147" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69146" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69146" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69146" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69146" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69145" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69144" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69144" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69139" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69131" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69123" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69114" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69042" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69016" stop="68938"/>
              <exon start="68790" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68776" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68771" stop="68725"/>
              <exon start="68537" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68528" stop="68463"/>
              <exon start="67990" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="67002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67965" stop="67928"/>
              <exon start="67768" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67715" stop="67709"/>
              <exon start="67565" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67501" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67496" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67305" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTTTCTTATCCCCTCACTCCATAGACAAGAAGAAGAAAAAGAAGATGAGCATCTCACTGTATACACCAGTTTCTCCCAAAAACCAATTACAAGTATTTTTGAAACCAAATCAGAATCCCCTTCTACTAGGTGATTCTGTTTTTCCAAAACGTGTTTCATTTGCTAGAAGAAAATGTACCACAAGGGCTCTGCTTTCACATTCCAAAGATGCTGTTTTGAAAGAGTTTCACGAGAAAAAAGCACTAAAG : ATTATCGCAGGATTGCAAAATCTGGACAAAGAGAATGTGGCTTCTGTTGTTACTGCTGCAGATAAG : GGAGGAGCAACACATGTAGATATAGCTTGTGACCCTGAGCTGGTGAAACTTGCTATAAGCCTGACTTCCCTTCCG : GTTTGTGTTTCTTCTGTGGATCCTTCAGCATTTCCAGCTGCTGTGGAAGCAGGAGCCTTGATG : GTTGAGATCGGAAACTATGACTCGTTCTATGAGAAGGGATTGGTGTTCTCTCCTGAACAG : ATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG : GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG : GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG : GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</gDNA_template>
            <first_frame> *  L  S  Y  P  L  T  P  *  T  R  R  R  K  R  R  *  A  S  H  C  I  H  Q  F  L  P  K  T  N  Y  K  Y  F  *  N  Q  I  R  I  P  F  Y  *  V  I  L  F  F  Q  N  V  F  H  L  L  E  E  N  V  P  Q  G  L  C  F  H  I  P  K  M  L  F  *  K  S  F  T  R  K  K  H  *  R :   L  S  Q  D  C  K  I  W  T  K  R  M  W  L  L  L  L  L  L  Q  I  R :   E  E  Q  H  M  *  I  *  L  V  T  L  S  W  *  N  L  L  *  A  *  L  P  F  R :   F  V  F  L  L  W  I  L  Q  H  F  Q  L  L  W  K  Q  E  P  *  W :   L  R  S  E  T  M  T  R  S  M  R  R  D  W  C  S  L  L  N  R :   F  *  T  *  R  R  R  Q  R  S  Y  F  H  Q  *  Y  Y  Q  S  L  C  L  T  R  *  A  F  L  I  R :   S  S  W  P  S  N  *  N  W  K  V  L  T  S  S  K  Q  K  E  E  N  A  L  L  H  Q  R  L  V  F  L  D  *  S  R  R :   Q  H  Q  H  *  Q  L  L  I  R  F  Q  G  L  S  I  S  P  S  C  V  H  L  D  *  V  Q  S  Q  H  Q  W  Q  S  *  L  E  L  L  A  W :   V  L  A  Q  P  S  T  S  S  T  I  R  *  Q  *  S  R  K  S  N  P  *  L  I  H  *  D  C  Q  P  R  S  R  I  Y  L  K  G  A  I  *  *  C  N  P  I  *  C  S  S  S  R  P  E  A  I  R  N  Y  Y  E  T  N  K  V  F  L  F  F  L  A  V  S  F  F  T  L  V  I  I  N  S  *  Y  I  N  M  S  F  N  L </first_frame>
            <second_frame>  N  F  L  I  P  S  L  H  R  Q  E  E  E  K  E  D  E  H  L  T  V  Y  T  S  F  S  Q  K  P  I  T  S  I  F  E  T  K  S  E  S  P  S  T  R  *  F  C  F  S  K  T  C  F  I  C  *  K  K  M  Y  H  K  G  S  A  F  T  F  Q  R  C  C  F  E  R  V  S  R  E  K  S  T  K   : D  Y  R  R  I  A  K  S  G  Q  R  E  C  G  F  C  C  Y  C  C  R  *   : G  R  S  N  T  C  R  Y  S  L  *  P  *  A  G  E  T  C  Y  K  P  D  F  P  S   : G  L  C  F  F  C  G  S  F  S  I  S  S  C  C  G  S  R  S  L  D   : G  *  D  R  K  L  *  L  V  L  *  E  G  I  G  V  L  S  *  T   : D  F  E  P  N  E  G  D  K  E  V  T  S  I  S  D  I  I  S  H  C  A  S  H  A  K  P  S  *  S   : G  Q  A  G  R  A  I  R  T  G  R  C  *  H  H  P  N  R  R  R  K  M  L  Y  S  I  K  G  W  Y  S  W  I  N  R  E   : G  N  T  N  T  S  S  C  L  F  D  F  K  G  C  Q  Y  P  R  H  V  F  I  W  I  E  C  S  H  S  T  N  G  N  R  S  W  S  C  W  R   : G  C  W  L  S  H  Q  Q  A  Q  R  S  G  S  N  D  R  G  S  Q  I  H  S  S  F  I  R  I  V  N  Q  E  A  E  F  I  *  R  E  Q  F  D  S  V  I  Q  S  N  V  V  A  Q  G  L  K  Q  L  G  I  I  M  K  L  I  K  F  F  Y  F  F  L  Q  Y  H  F  L  H  *  L  L  *  I  H  N  T  *  I  C  H  L  T   </second_frame>
            <third_frame>   T  F  L  S  P  H  S  I  D  K  K  K  K  K  K  M  S  I  S  L  Y  T  P  V  S  P  K  N  Q  L  Q  V  F  L  K  P  N  Q  N  P  L  L  L  G  D  S  V  F  P  K  R  V  S  F  A  R  R  K  C  T  T  R  A  L  L  S  H  S  K  D  A  V  L  K  E  F  H  E  K  K  A  L  K  :  I  I  A  G  L  Q  N  L  D  K  E  N  V  A  S  V  V  T  A  A  D  K  :  G  G  A  T  H  V  D  I  A  C  D  P  E  L  V  K  L  A  I  S  L  T  S  L  P  :  V  C  V  S  S  V  D  P  S  A  F  P  A  A  V  E  A  G  A  L  M  :  V  E  I  G  N  Y  D  S  F  Y  E  K  G  L  V  F  S  P  E  Q  :  I  L  N  L  T  K  E  T  K  K  L  L  P  S  V  I  L  S  V  T  V  P  H  T  L  S  L  P  D  Q  :  V  K  L  A  E  Q  L  E  L  E  G  V  D  I  I  Q  T  E  G  G  K  C  S  T  P  S  K  A  G  I  L  G  L  I  E  K  :  A  T  P  T  L  A  A  A  Y  S  I  S  R  A  V  N  I  P  V  M  C  S  S  G  L  S  A  V  T  A  P  M  A  I  V  A  G  A  A  G  V  :  G  V  G  S  A  I  N  K  L  N  D  Q  V  A  M  I  A  E  V  K  S  I  A  H  S  L  G  L  S  T  K  K  Q  N  L  F  E  G  S  N  L  I  V  *  S  N  L  M  *  *  L  K  A  *  S  N  *  E  L  L  *  N  *  *  S  F  S  I  F  S  C  S  I  I  F  Y  I  S  Y  Y  K  F  I  I  H  K  Y  V  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69186" stop="68938"/>
                    <exon start="68790" stop="68725"/>
                    <exon start="68537" stop="68463"/>
                    <exon start="67990" stop="67928"/>
                    <exon start="67768" stop="67709"/>
                    <exon start="67565" stop="67476"/>
                    <exon start="67394" stop="67287"/>
                    <exon start="67091" stop="66969"/>
                    <exon start="66857" stop="66726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFLSPHSIDKKKKKKMSISLYTPVSPKNQLQVFLKPNQNPLLLGDSVFPKRVSFARRKCTTRALLSHSKDAVLKEFHEKKALKIIAGLQNLDKENVASVVTAADKGGATHVDIACDPELVKLAISLTSLPVCVSSVDPSAFPAAVEAGALMVEIGNYDSFYEKGLVFSPEQILNLTKETKKLLPSVILSVTVPHTLSLPDQVKLAEQLELEGVDIIQTEGGKCSTPSKAGILGLIEKATPTLAAAYSISRAVNIPVMCSSGLSAVTAPMAIVAGAAGVGVGSAINKLNDQVAMIAEVKSIAHSLGLSTKKQNLFEGSNLIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67567" e_stop="67476"/>
            <exon e_start="67394" e_stop="67287"/>
            <exon e_start="67091" e_stop="66969"/>
            <exon e_start="66857" e_stop="66584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67567" e_stop="67476" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67475" i_stop="67395" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67394" e_stop="67287" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67286" i_stop="67092" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67091" e_stop="66969" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66968" i_stop="66858" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="66857" e_stop="66584" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67567" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67501" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67496" stop="67476"/>
              <exon start="67394" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67306" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67305" stop="67287"/>
              <exon start="67091" stop="66969"/>
              <exon start="66857" stop="66584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTTGAACCTAACGAAGGAGACAAAGAAGTTACTTCCATCAGTGATATTATCAGTCACTGTGCCTCACACGCTAAGCCTTCCTGATCAG : GTCAAGCTGGCCGAGCAATTAGAACTGGAAGGTGTTGACATCATCCAAACAGAAGGAGGAAAATGCTCTACTCCATCAAAGGCTGGTATTCTTGGATTAATCGAGAAG : GCAACACCAACACTAGCAGCTGCTTATTCGATTTCAAGGGCTGTCAATATCCCCGTCATGTGTTCATCTGGATTGAGTGCAGTCACAGCACCAATGGCAATCGTAGCTGGAGCTGCTGGCGTG : GGTGTTGGCTCAGCCATCAACAAGCTCAACGATCAGGTAGCAATGATCGCGGAAGTCAAATCCATAGCTCATTCATTAGGATTGTCAACCAAGAAGCAGAATTTATTTGAAGGGAGCAATTTGATAGTGTAATCCAATCTAATGTAGTAGCTCAAGGCCTGAAGCAATTAGGAATTATTATGAAACTAATAAAGTTTTTCTATTTTTTCTTGCAGTATCATTTTTTACATTAGTTATTATAAATTCATAATACATAAATATGTCATTTAACTTA</gDNA_template>
            <first_frame> R  F  *  T  *  R  R  R  Q  R  S  Y  F  H  Q  *  Y  Y  Q  S  L  C  L  T  R  *  A  F  L  I  R :   S  S  W  P  S  N  *  N  W  K  V  L  T  S  S  K  Q  K  E  E  N  A  L  L  H  Q  R  L  V  F  L  D  *  S  R  R :   Q  H  Q  H  *  Q  L  L  I  R  F  Q  G  L  S  I  S  P  S  C  V  H  L  D  *  V  Q  S  Q  H  Q  W  Q  S  *  L  E  L  L  A  W :   V  L  A  Q  P  S  T  S  S  T  I  R  *  Q  *  S  R  K  S  N  P  *  L  I  H  *  D  C  Q  P  R  S  R  I  Y  L  K  G  A  I  *  *  C  N  P  I  *  C  S  S  S  R  P  E  A  I  R  N  Y  Y  E  T  N  K  V  F  L  F  F  L  A  V  S  F  F  T  L  V  I  I  N  S  *  Y  I  N  M  S  F  N  L </first_frame>
            <second_frame>  D  F  E  P  N  E  G  D  K  E  V  T  S  I  S  D  I  I  S  H  C  A  S  H  A  K  P  S  *  S   : G  Q  A  G  R  A  I  R  T  G  R  C  *  H  H  P  N  R  R  R  K  M  L  Y  S  I  K  G  W  Y  S  W  I  N  R  E   : G  N  T  N  T  S  S  C  L  F  D  F  K  G  C  Q  Y  P  R  H  V  F  I  W  I  E  C  S  H  S  T  N  G  N  R  S  W  S  C  W  R   : G  C  W  L  S  H  Q  Q  A  Q  R  S  G  S  N  D  R  G  S  Q  I  H  S  S  F  I  R  I  V  N  Q  E  A  E  F  I  *  R  E  Q  F  D  S  V  I  Q  S  N  V  V  A  Q  G  L  K  Q  L  G  I  I  M  K  L  I  K  F  F  Y  F  F  L  Q  Y  H  F  L  H  *  L  L  *  I  H  N  T  *  I  C  H  L  T   </second_frame>
            <third_frame>   I  L  N  L  T  K  E  T  K  K  L  L  P  S  V  I  L  S  V  T  V  P  H  T  L  S  L  P  D  Q  :  V  K  L  A  E  Q  L  E  L  E  G  V  D  I  I  Q  T  E  G  G  K  C  S  T  P  S  K  A  G  I  L  G  L  I  E  K  :  A  T  P  T  L  A  A  A  Y  S  I  S  R  A  V  N  I  P  V  M  C  S  S  G  L  S  A  V  T  A  P  M  A  I  V  A  G  A  A  G  V  :  G  V  G  S  A  I  N  K  L  N  D  Q  V  A  M  I  A  E  V  K  S  I  A  H  S  L  G  L  S  T  K  K  Q  N  L  F  E  G  S  N  L  I  V  *  S  N  L  M  *  *  L  K  A  *  S  N  *  E  L  L  *  N  *  *  S  F  S  I  F  S  C  S  I  I  F  Y  I  S  Y  Y  K  F  I  I  H  K  Y  V  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67565" stop="67476"/>
                    <exon start="67394" stop="67287"/>
                    <exon start="67091" stop="66969"/>
                    <exon start="66857" stop="66726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNLTKETKKLLPSVILSVTVPHTLSLPDQVKLAEQLELEGVDIIQTEGGKCSTPSKAGILGLIEKATPTLAAAYSISRAVNIPVMCSSGLSAVTAPMAIVAGAAGVGVGSAINKLNDQVAMIAEVKSIAHSLGLSTKKQNLFEGSNLIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="71373" PGL_stop="70088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71373" e_stop="70088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="71373" e_stop="70088" e_length="1286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71373" stop="70970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71203" stop="70611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71172" stop="70409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71171" stop="70575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71164" stop="70813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71074" stop="70451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70824" stop="70102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70630" stop="70129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70486" stop="70214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70388" stop="70088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAGTGTTCGAATATGAAACTGCAAACTACAGTTACGGTGTCACAGCCAGAGATGATGTCTGTTGATGCTCCAAGAGAAATCCTGACAAATGTGCCACTTCCTGCAAATGGATATAGCTTTCTTGTAAAACTCAATGATGCTTATCGCCACAAGTATAAATCTGCTAAAAACAGGGCAATTTTCTTGTTTGATTGCCTGGTTGATCCACCTTATGTTGGTTATGTGAAGCCGTGGGTTGATCTTGATACGGGTAATTCATATTGCCTTTTCTTCCCTTACTCTCCTGAAAGTTTGGTACTTGCCACTCCAAAGTCAGGAGGCATTAAACAGGATTTAGCTGTTACTATTAAGGCATCACTGATCGGAGAGCAGAATATCTCAGGATCTGCATCAGCACTTTTTGTTGGAGGTTTCATCATTCCGGGAACGGAAGGAGATTCATTGCAGTTAAATCTAACCCCACAATTTAACAGGAGTGTCCTCACTGTTGTAGGAAACACAGATGTGAGTATCTACTGGCATGATCGGGAACGACTAGCTGTCAGACCCATACATGGAGAAGATTCTCAAGGAAGAAGCCGTGCACAGTATGAGATCAAAATTCGCAGAGCAGAGAAGTTTAAAGACAAACTGATTTTTACACTCCCAGCAACTGGTCAGATCACGGAAGTTAATGTTAACTATGAACCTGAAGAGAGAAGAGCAACAATTATTAACCTTAATTTATGGGCTACTGCAGCTGCTTGTTTCATCTTGCTTATAGTCACAGCCACTGTATTCATTTCTTACTTGGATCAACCTGTGAGATCCCGACCATCTGCTCCTCCTGGCACACCAAGTGTAGCTGCACCTGTAACTCCTGAGCGAAGCAGTCCTGCTGGAGTAAGCGAACATTCACCTCGGACACCTCAACCTTTCTTGGATTATGTTAGGAGGACAATTGATGAAACTCCATACTACAGACAAGACTTTAGGAGGAGGGCTAACCCTCAGAACACTTACTAGCATATTGTGGGGCCAATTCACCTCTTCCCTACTCCCCCTTTTGCCTTTGCTAGATATGCCAAATGGTTTCTCAGGTAATTGCCAAAGGTCTTGAATCTGGCTGCAAACTTTACAATGATAGTGTTGTAGTTTTGTTGGTGTAATTTTGTGTAGAGTATTGCAAGCTGTGTGTCATTGGATACTTTCTAGAGAAGCAGCCTCATCTGCCAAAAAATTCTTATGTCCTGCTTTCTGCTGGAAAAGGCAATACAACAGCACTTTCTACAGTACAACTTGCC</gDNA_template>
            <first_frame> F  E  C  S  N  M  K  L  Q  T  T  V  T  V  S  Q  P  E  M  M  S  V  D  A  P  R  E  I  L  T  N  V  P  L  P  A  N  G  Y  S  F  L  V  K  L  N  D  A  Y  R  H  K  Y  K  S  A  K  N  R  A  I  F  L  F  D  C  L  V  D  P  P  Y  V  G  Y  V  K  P  W  V  D  L  D  T  G  N  S  Y  C  L  F  F  P  Y  S  P  E  S  L  V  L  A  T  P  K  S  G  G  I  K  Q  D  L  A  V  T  I  K  A  S  L  I  G  E  Q  N  I  S  G  S  A  S  A  L  F  V  G  G  F  I  I  P  G  T  E  G  D  S  L  Q  L  N  L  T  P  Q  F  N  R  S  V  L  T  V  V  G  N  T  D  V  S  I  Y  W  H  D  R  E  R  L  A  V  R  P  I  H  G  E  D  S  Q  G  R  S  R  A  Q  Y  E  I  K  I  R  R  A  E  K  F  K  D  K  L  I  F  T  L  P  A  T  G  Q  I  T  E  V  N  V  N  Y  E  P  E  E  R  R  A  T  I  I  N  L  N  L  W  A  T  A  A  A  C  F  I  L  L  I  V  T  A  T  V  F  I  S  Y  L  D  Q  P  V  R  S  R  P  S  A  P  P  G  T  P  S  V  A  A  P  V  T  P  E  R  S  S  P  A  G  V  S  E  H  S  P  R  T  P  Q  P  F  L  D  Y  V  R  R  T  I  D  E  T  P  Y  Y  R  Q  D  F  R  R  R  A  N  P  Q  N  T  Y  *  H  I  V  G  P  I  H  L  F  P  T  P  P  F  A  F  A  R  Y  A  K  W  F  L  R  *  L  P  K  V  L  N  L  A  A  N  F  T  M  I  V  L  *  F  C  W  C  N  F  V  *  S  I  A  S  C  V  S  L  D  T  F  *  R  S  S  L  I  C  Q  K  I  L  M  S  C  F  L  L  E  K  A  I  Q  Q  H  F  L  Q  Y  N  L   </first_frame>
            <second_frame>  L  S  V  R  I  *  N  C  K  L  Q  L  R  C  H  S  Q  R  *  C  L  L  M  L  Q  E  K  S  *  Q  M  C  H  F  L  Q  M  D  I  A  F  L  *  N  S  M  M  L  I  A  T  S  I  N  L  L  K  T  G  Q  F  S  C  L  I  A  W  L  I  H  L  M  L  V  M  *  S  R  G  L  I  L  I  R  V  I  H  I  A  F  S  S  L  T  L  L  K  V  W  Y  L  P  L  Q  S  Q  E  A  L  N  R  I  *  L  L  L  L  R  H  H  *  S  E  S  R  I  S  Q  D  L  H  Q  H  F  L  L  E  V  S  S  F  R  E  R  K  E  I  H  C  S  *  I  *  P  H  N  L  T  G  V  S  S  L  L  *  E  T  Q  M  *  V  S  T  G  M  I  G  N  D  *  L  S  D  P  Y  M  E  K  I  L  K  E  E  A  V  H  S  M  R  S  K  F  A  E  Q  R  S  L  K  T  N  *  F  L  H  S  Q  Q  L  V  R  S  R  K  L  M  L  T  M  N  L  K  R  E  E  Q  Q  L  L  T  L  I  Y  G  L  L  Q  L  L  V  S  S  C  L  *  S  Q  P  L  Y  S  F  L  T  W  I  N  L  *  D  P  D  H  L  L  L  L  A  H  Q  V  *  L  H  L  *  L  L  S  E  A  V  L  L  E  *  A  N  I  H  L  G  H  L  N  L  S  W  I  M  L  G  G  Q  L  M  K  L  H  T  T  D  K  T  L  G  G  G  L  T  L  R  T  L  T  S  I  L  W  G  Q  F  T  S  S  L  L  P  L  L  P  L  L  D  M  P  N  G  F  S  G  N  C  Q  R  S  *  I  W  L  Q  T  L  Q  *  *  C  C  S  F  V  G  V  I  L  C  R  V  L  Q  A  V  C  H  W  I  L  S  R  E  A  A  S  S  A  K  K  F  L  C  P  A  F  C  W  K  R  Q  Y  N  S  T  F  Y  S  T  T  C  </second_frame>
            <third_frame>   *  V  F  E  Y  E  T  A  N  Y  S  Y  G  V  T  A  R  D  D  V  C  *  C  S  K  R  N  P  D  K  C  A  T  S  C  K  W  I  *  L  S  C  K  T  Q  *  C  L  S  P  Q  V  *  I  C  *  K  Q  G  N  F  L  V  *  L  P  G  *  S  T  L  C  W  L  C  E  A  V  G  *  S  *  Y  G  *  F  I  L  P  F  L  P  L  L  S  *  K  F  G  T  C  H  S  K  V  R  R  H  *  T  G  F  S  C  Y  Y  *  G  I  T  D  R  R  A  E  Y  L  R  I  C  I  S  T  F  C  W  R  F  H  H  S  G  N  G  R  R  F  I  A  V  K  S  N  P  T  I  *  Q  E  C  P  H  C  C  R  K  H  R  C  E  Y  L  L  A  *  S  G  T  T  S  C  Q  T  H  T  W  R  R  F  S  R  K  K  P  C  T  V  *  D  Q  N  S  Q  S  R  E  V  *  R  Q  T  D  F  Y  T  P  S  N  W  S  D  H  G  S  *  C  *  L  *  T  *  R  E  K  S  N  N  Y  *  P  *  F  M  G  Y  C  S  C  L  F  H  L  A  Y  S  H  S  H  C  I  H  F  L  L  G  S  T  C  E  I  P  T  I  C  S  S  W  H  T  K  C  S  C  T  C  N  S  *  A  K  Q  S  C  W  S  K  R  T  F  T  S  D  T  S  T  F  L  G  L  C  *  E  D  N  *  *  N  S  I  L  Q  T  R  L  *  E  E  G  *  P  S  E  H  L  L  A  Y  C  G  A  N  S  P  L  P  Y  S  P  F  C  L  C  *  I  C  Q  M  V  S  Q  V  I  A  K  G  L  E  S  G  C  K  L  Y  N  D  S  V  V  V  L  L  V  *  F  C  V  E  Y  C  K  L  C  V  I  G  Y  F  L  E  K  Q  P  H  L  P  K  N  S  Y  V  L  L  S  A  G  K  G  N  T  T  A  L  S  T  V  Q  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71373" stop="70366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FECSNMKLQTTVTVSQPEMMSVDAPREILTNVPLPANGYSFLVKLNDAYRHKYKSAKNRAIFLFDCLVDPPYVGYVKPWVDLDTGNSYCLFFPYSPESLVLATPKSGGIKQDLAVTIKASLIGEQNISGSASALFVGGFIIPGTEGDSLQLNLTPQFNRSVLTVVGNTDVSIYWHDRERLAVRPIHGEDSQGRSRAQYEIKIRRAEKFKDKLIFTLPATGQITEVNVNYEPEERRATIINLNLWATAAACFILLIVTATVFISYLDQPVRSRPSAPPGTPSVAAPVTPERSSPAGVSEHSPRTPQPFLDYVRRTIDETPYYRQDFRRRANPQNTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96094" PGL_stop="97489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96104" e_stop="96243"/>
            <exon e_start="97250" e_stop="97489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.929"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="96104" e_stop="96243" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96244" i_stop="97249" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="97250" e_stop="97489" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96104" stop="96243"/>
              <exon start="97250" stop="97489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96159" stop="96243"/>
              <exon start="97250" stop="97489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCTGTTCTT : CAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATTTTTAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAA</gDNA_template>
            <first_frame> L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  E  H  *  K  F  F  F  L  C  I  F  F  L  S  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  F  L  F  F :   S  S  S  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  F  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N   </first_frame>
            <second_frame>  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  N  T  E  N  F  S  F  S  A  Y  F  F  S  Q  N  K  I  K  V  S  I  D  *  V  C  V  T  C  S  C  S   : S  V  R  R  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  N  F  C  G  L  G  L  I  L  V  F  L  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  </second_frame>
            <third_frame>   C  *  K  W  L  *  K  E  V  N  F  *  F  L  R  T  L  K  I  F  L  S  L  H  I  F  S  L  K  I  K  S  K  C  R  S  I  E  S  V  *  L  V  P  V  L  :  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  I  S  V  D  S  D  *  F  L  Y  F  *  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96094" e_stop="96237"/>
            <exon e_start="97244" e_stop="97327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="96094" e_stop="96237" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96238" i_stop="97243" i_length="1006"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="97244" e_stop="97327" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96094" stop="96237"/>
              <exon start="97244" stop="97327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAGAACACTGAAAATTTTTCTTTCTCTGCATATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGATTGAGTCTGTGTGACTTGTTCCT : GTTCTTCAGTTCGTCGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  R  T  L  K  I  F  L  S  L  H  I  F  S  L  K  I  K  S  K  C  R  S  I  E  S  V  *  L  V  P  :  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  E  H  *  K  F  F  F  L  C  I  F  F  L  S  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  F  L :   F  F  S  S  S  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  N  T  E  N  F  S  F  S  A  Y  F  F  S  Q  N  K  I  K  V  S  I  D  *  V  C  V  T  C  S   : C  S  S  V  R  R  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97251" PGL_stop="96464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97251" e_stop="96464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="97251" e_stop="96464" e_length="788"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97251" stop="96464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGAACTGTTGCCAATCTGTGTTAAGAAAATCAGAAATTACTGGTTGTGATAAATCATTCAGAAACACGAAGTAACTGAGATTTTTAGAACCAGTAAATAAGATGAACAGAAATTTATTTGTAAAAATAATTTAATCTGTAAAACTTACCAGAATCTTGAATACTCTTTTTGATAATTTAGGAAGAAAATCAAGTCCACTGAATTTACAGTGTCCCCTTAAGGAAATTATTCCCCTCTAGTATCCGAGGTTTGATTTGGAATATAACCTCCCAGGGTAAAATGATCTTAATCAGTAGAGTATAGATACCAAAAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAATGTGTTTTTTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTAAAAACTGAATGGTATTTATAGGCAAGAATAATATATTCTGAAAGGTTGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGAAATTTTTAAATATAACGGAATTTAAAACGGGTCACGCGTGCGGACCTGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTGGTTAATTTTTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATCAAATAAATAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATTTGCCAAAGCCAAAGCCGAAGCGAGCGA</gDNA_template>
            <first_frame> *  R  T  V  A  N  L  C  *  E  N  Q  K  L  L  V  V  I  N  H  S  E  T  R  S  N  *  D  F  *  N  Q  *  I  R  *  T  E  I  Y  L  *  K  *  F  N  L  *  N  L  P  E  S  *  I  L  F  L  I  I  *  E  E  N  Q  V  H  *  I  Y  S  V  P  L  R  K  L  F  P  S  S  I  R  G  L  I  W  N  I  T  S  Q  G  K  M  I  L  I  S  R  V  *  I  P  K  T  L  L  S  A  N  Q  S  T  A  G  K  Y  T  K  K  N  V  F  F  K  K  *  E  D  Q  K  I  R  *  *  I  F  *  K  L  N  G  I  Y  R  Q  E  *  Y  I  L  K  G  C  N  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  G  N  F  *  I  *  R  N  L  K  R  V  T  R  A  D  L  S  R  V  G  L  T  K  K  L  K  T  F  R  L  V  N  F  C  Y  Q  L  I  N  *  K  *  F  L  A  I  *  L  I  K  *  I  I  K  I  N  L  S  K  K  L  S  L  D  R  F  A  K  A  K  A  E  A  S   </first_frame>
            <second_frame>  E  E  L  L  P  I  C  V  K  K  I  R  N  Y  W  L  *  *  I  I  Q  K  H  E  V  T  E  I  F  R  T  S  K  *  D  E  Q  K  F  I  C  K  N  N  L  I  C  K  T  Y  Q  N  L  E  Y  S  F  *  *  F  R  K  K  I  K  S  T  E  F  T  V  S  P  *  G  N  Y  S  P  L  V  S  E  V  *  F  G  I  *  P  P  R  V  K  *  S  *  S  V  E  Y  R  Y  Q  K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  K  M  C  F  L  R  S  R  K  I  R  K  F  V  S  K  Y  S  K  N  *  M  V  F  I  G  K  N  N  I  F  *  K  V  A  T  L  S  E  L  T  Q  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  E  I  F  K  Y  N  G  I  *  N  G  S  R  V  R  T  *  V  G  S  G  *  L  K  S  *  K  H  F  G  W  L  I  F  V  I  N  *  L  I  E  N  N  F  W  P  F  N  *  S  N  K  *  L  K  *  I  C  P  K  N  Y  L  S  I  D  L  P  K  P  K  P  K  R  A  </second_frame>
            <third_frame>   K  N  C  C  Q  S  V  L  R  K  S  E  I  T  G  C  D  K  S  F  R  N  T  K  *  L  R  F  L  E  P  V  N  K  M  N  R  N  L  F  V  K  I  I  *  S  V  K  L  T  R  I  L  N  T  L  F  D  N  L  G  R  K  S  S  P  L  N  L  Q  C  P  L  K  E  I  I  P  L  *  Y  P  R  F  D  L  E  Y  N  L  P  G  *  N  D  L  N  Q  *  S  I  D  T  K  N  S  T  V  S  E  S  I  H  S  R  K  V  H  E  E  K  C  V  F  *  E  V  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  I  Y  S  E  R  L  Q  P  F  Q  N  *  H  N  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  R  K  F  L  N  I  T  E  F  K  T  G  H  A  C  G  P  E  S  G  R  V  N  *  K  V  E  N  I  S  V  G  *  F  L  L  S  T  D  *  L  K  I  I  F  G  H  L  I  N  Q  I  N  N  *  N  K  F  V  Q  K  I  I  S  R  S  I  C  Q  S  Q  S  R  S  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="97683" PGL_stop="98307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97683" e_stop="98307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="97683" e_stop="98307" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97683" stop="98307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97683" stop="98265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTCCGGAACTGCACTTTTTGGCGTCTATTGGAATGGGTTTTGATTACCAACATAACGAATTATTGATCTTGAGAATCTTTTGTGTGGGCATAATGTTTGCAGTCCCGAACCACATTTGAGGTTTATTCGAGTGAGAGTGGGAAATGGAAGAAGCTGAAAAATGAGATGTTTTTTCATATTGTTGAGTTAACTTGCAATGTGATTGTTAAAAGATGGCGTATTGGTTGGTTTGTATGCCTGGTAAGTTCGGATCACGTGCTGTGTTAGTGCGATTTGATGTGGGGAAACTAGTGTTTGAGAAGTTACCTTCGATAGGAAGGCGTAAGAAGCATCAATATCTTGTGGAATTGCAGGGTTCTCTTTGTATGTAAGACTGGGATCATAAAGATGATTGTCATATGGATGGATGTTTGGGTAATGGATGATGTTGATGGTTGGAGTAAGAAATACAGCGTTGGACCATTAATCGGATTTTTTGACCGAATCTTGGGTTGTTTGAGGAATGGTGACATTGTAGCTAAGAATGAAATGGAGTGATATCCTTGTGTGAACCCATATCTAATTCAGTCAAGGAAAATTTCAGCATTGATAATAGCAATGATGAATCATATGTGATTGTTGA</gDNA_template>
            <first_frame> L  V  R  N  C  T  F  W  R  L  L  E  W  V  L  I  T  N  I  T  N  Y  *  S  *  E  S  F  V  W  A  *  C  L  Q  S  R  T  T  F  E  V  Y  S  S  E  S  G  K  W  K  K  L  K  N  E  M  F  F  H  I  V  E  L  T  C  N  V  I  V  K  R  W  R  I  G  W  F  V  C  L  V  S  S  D  H  V  L  C  *  C  D  L  M  W  G  N  *  C  L  R  S  Y  L  R  *  E  G  V  R  S  I  N  I  L  W  N  C  R  V  L  F  V  C  K  T  G  I  I  K  M  I  V  I  W  M  D  V  W  V  M  D  D  V  D  G  W  S  K  K  Y  S  V  G  P  L  I  G  F  F  D  R  I  L  G  C  L  R  N  G  D  I  V  A  K  N  E  M  E  *  Y  P  C  V  N  P  Y  L  I  Q  S  R  K  I  S  A  L  I  I  A  M  M  N  H  M  *  L  L  </first_frame>
            <second_frame>  S  S  G  T  A  L  F  G  V  Y  W  N  G  F  *  L  P  T  *  R  I  I  D  L  E  N  L  L  C  G  H  N  V  C  S  P  E  P  H  L  R  F  I  R  V  R  V  G  N  G  R  S  *  K  M  R  C  F  F  I  L  L  S  *  L  A  M  *  L  L  K  D  G  V  L  V  G  L  Y  A  W  *  V  R  I  T  C  C  V  S  A  I  *  C  G  E  T  S  V  *  E  V  T  F  D  R  K  A  *  E  A  S  I  S  C  G  I  A  G  F  S  L  Y  V  R  L  G  S  *  R  *  L  S  Y  G  W  M  F  G  *  W  M  M  L  M  V  G  V  R  N  T  A  L  D  H  *  S  D  F  L  T  E  S  W  V  V  *  G  M  V  T  L  *  L  R  M  K  W  S  D  I  L  V  *  T  H  I  *  F  S  Q  G  K  F  Q  H  *  *  *  Q  *  *  I  I  C  D  C  * </second_frame>
            <third_frame>   R  P  E  L  H  F  L  A  S  I  G  M  G  F  D  Y  Q  H  N  E  L  L  I  L  R  I  F  C  V  G  I  M  F  A  V  P  N  H  I  *  G  L  F  E  *  E  W  E  M  E  E  A  E  K  *  D  V  F  S  Y  C  *  V  N  L  Q  C  D  C  *  K  M  A  Y  W  L  V  C  M  P  G  K  F  G  S  R  A  V  L  V  R  F  D  V  G  K  L  V  F  E  K  L  P  S  I  G  R  R  K  K  H  Q  Y  L  V  E  L  Q  G  S  L  C  M  *  D  W  D  H  K  D  D  C  H  M  D  G  C  L  G  N  G  *  C  *  W  L  E  *  E  I  Q  R  W  T  I  N  R  I  F  *  P  N  L  G  L  F  E  E  W  *  H  C  S  *  E  *  N  G  V  I  S  L  C  E  P  I  S  N  S  V  K  E  N  F  S  I  D  N  S  N  D  E  S  Y  V  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98001" stop="98222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGVRSINILWNCRVLFVCKTGIIKMIVIWMDVWVMDDVDGWSKKYSVGPLIGFFDRILGCLRNGDIVAKNEME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="101029" PGL_stop="105194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101029" e_stop="101285"/>
            <exon e_start="101360" e_stop="101411"/>
            <exon e_start="102787" e_stop="102882"/>
            <exon e_start="104118" e_stop="104182"/>
            <exon e_start="104454" e_stop="104587"/>
            <exon e_start="104643" e_stop="105194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.972" e_score="0.985"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.761"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101029" e_stop="101285" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101286" i_stop="101359" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101360" e_stop="101411" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.382">
            <gDNA_intron_boundary i_start="101412" i_stop="102786" i_length="1375"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102787" e_stop="102882" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102883" i_stop="104117" i_length="1235"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="104118" e_stop="104182" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.972">
            <gDNA_intron_boundary i_start="104183" i_stop="104453" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="0.761">
            <gDNA_exon_boundary e_start="104454" e_stop="104587" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="104588" i_stop="104642" i_length="55"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="104643" e_stop="105194" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101029" stop="101285"/>
              <exon start="101360" stop="101411"/>
              <exon start="102787" stop="102882"/>
              <exon start="104118" stop="104182"/>
              <exon start="104454" stop="104587"/>
              <exon start="104643" stop="104761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102798" stop="102882"/>
              <exon start="104118" stop="104182"/>
              <exon start="104454" stop="104587"/>
              <exon start="104643" stop="105194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG : CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG : GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG : GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAG : GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCCGTATGTCTTCTGCTGGTCTCATGAGATGTCTTTTGTTTTGACTGCATAAGTTTCTAAGAG : TTTGTACATCTCTTCTCATGGTTTTATATTATTTTATAGGTACCCTTTAAAACTTGTGTTCCTTACTGAAAGCTTGATTTTAAATTCTAGACTTCAGTGGGAACTTCTGCTTTCTGCCTGCTAATTGTTGTTACCAATTGTTGAAGCTATGAGATTCTCCTCAAGCCCAACCCCTTATACCTAGGAGCTACTAACTGTAGTTAATTAGATGAAAAAGGCTGAACATGGTGGAAGGAACCAATTTAATAATCAGAGGTTGCTCTGATGATGTTACATAAGTGCATTAATATCGTAAACATTTTGAGGAGTTGTGAGATGTCTCTCTGGATCCTTTTTACAGAAGTTGGGAGCTATAGAGTAAGGACTTAACATAAGAGCTAGATTGGGACATATTAGATATTTCTTTAGAATTCGGGGCATGACTGAGAGGGGACTCCAGTTAATTTGTTCAACCAAGAATGCAAGTAGCGTGTACGTGTTTTGTTGGGGGGAGCTGATCTTACAATGCAGTTCTTTCCTACAAATTAGAATTTTATTCACAAAAAAAAGGGG</gDNA_template>
            <first_frame> L  I  L  D  M  E  L  *  *  T  T  C  A  R  V  Y  S  Y  L  N  T  L  P  L  S  S  F  I  F  Y  F  L  C  I  S  *  G  S  Y  C  P  A  S  N  S  M  N  R  S  L  T  L  F  S  C  R  L  F  P  L  F  F  V  D  S  C  C  C  M  *  G  L  D  F  L  A  H  S  C  G  F  V  V  M  G  S :   F  H  Q  N  S  F  P  C  C  I  S  S  S  P  F  F  L  :  V  T  L  L  V  F  L  L  M  L  V  A  A  V  L  I  W  I  G  R  G  R  N  P  I  D  S  S  V  L  A  R  :  D  W  Y  C  S  *  K  *  A  K  *  D  L  K  G  L  H  Q  K  C  G  R :   L  Q  A  W  Q  L  F  L  F  Y  V  S  L  *  V  S  C  R  L  I  H  R  Y  T  R  M  S  S  A  G  L  M  R  C  L  L  F  *  L  H  K  F  L  R   : V  C  T  S  L  L  M  V  L  Y  Y  F  I  G  T  L  *  N  L  C  S  L  L  K  A  *  F  *  I  L  D  F  S  G  N  F  C  F  L  P  A  N  C  C  Y  Q  L  L  K  L  *  D  S  P  Q  A  Q  P  L  I  P  R  S  Y  *  L  *  L  I  R  *  K  R  L  N  M  V  E  G  T  N  L  I  I  R  G  C  S  D  D  V  T  *  V  H  *  Y  R  K  H  F  E  E  L  *  D  V  S  L  D  P  F  Y  R  S  W  E  L  *  S  K  D  L  T  *  E  L  D  W  D  I  L  D  I  S  L  E  F  G  A  *  L  R  G  D  S  S  *  F  V  Q  P  R  M  Q  V  A  C  T  C  F  V  G  G  S  *  S  Y  N  A  V  L  S  Y  K  L  E  F  Y  S  Q  K  K  G  </first_frame>
            <second_frame>  *  F  W  T  W  N  F  D  K  P  P  V  H  V  Y  T  V  I  *  I  P  Y  L  Y  L  L  L  F  F  T  F  C  A  F  H  K  D  L  T  V  R  Q  V  I  V  *  I  G  H  *  L  Y  S  P  A  G  Y  F  L  Y  F  L  L  T  V  V  A  A  C  K  G  W  I  F  W  R  T  P  V  A  L  L  *  W  V   : A  F  T  R  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   L  P  C  *  F  F  C  *  C  W  *  L  L  Y  *  Y  G  L  G  G  E  G  T  L  L  I  H  L  F  W  L  G :   T  G  I  V  L  E  N  E  Q  S  E  I  *  K  G  F  I  R  N  V  E   : G  C  R  L  G  S  C  F  C  S  M  F  H  F  K  *  A  V  A  L  F  T  D  I  P  V  C  L  L  L  V  S  *  D  V  F  C  F  D  C  I  S  F  *  E  :  F  V  H  L  F  S  W  F  Y  I  I  L  *  V  P  F  K  T  C  V  P  Y  *  K  L  D  F  K  F  *  T  S  V  G  T  S  A  F  C  L  L  I  V  V  T  N  C  *  S  Y  E  I  L  L  K  P  N  P  L  Y  L  G  A  T  N  C  S  *  L  D  E  K  G  *  T  W  W  K  E  P  I  *  *  S  E  V  A  L  M  M  L  H  K  C  I  N  I  V  N  I  L  R  S  C  E  M  S  L  W  I  L  F  T  E  V  G  S  Y  R  V  R  T  *  H  K  S  *  I  G  T  Y  *  I  F  L  *  N  S  G  H  D  *  E  G  T  P  V  N  L  F  N  Q  E  C  K  *  R  V  R  V  L  L  G  G  A  D  L  T  M  Q  F  F  P  T  N  *  N  F  I  H  K  K  K  G </second_frame>
            <third_frame>   N  F  G  H  G  T  L  I  N  H  L  C  T  C  I  Q  L  F  K  Y  L  T  F  I  F  F  Y  F  L  L  S  V  H  F  I  R  I  L  L  S  G  K  *  *  Y  E  S  V  I  N  F  I  L  L  Q  V  I  S  F  I  F  C  *  Q  L  L  L  H  V  R  V  G  F  S  G  A  L  L  W  L  C  C  N  G  *  :  L  S  P  E  F  F  S  L  L  H  F  F  F  S  F  L  S   : G  Y  P  V  S  F  S  V  N  V  G  S  C  C  T  N  M  D  W  E  G  K  E  P  Y  *  F  I  C  S  G  S   : G  L  V  L  F  L  K  M  S  K  V  R  S  E  R  A  S  S  E  M  W  K  :  V  A  G  L  A  V  V  S  V  L  C  F  T  L  S  E  L  S  P  Y  S  Q  I  Y  P  Y  V  F  C  W  S  H  E  M  S  F  V  L  T  A  *  V  S  K  S :   L  Y  I  S  S  H  G  F  I  L  F  Y  R  Y  P  L  K  L  V  F  L  T  E  S  L  I  L  N  S  R  L  Q  W  E  L  L  L  S  A  C  *  L  L  L  P  I  V  E  A  M  R  F  S  S  S  P  T  P  Y  T  *  E  L  L  T  V  V  N  *  M  K  K  A  E  H  G  G  R  N  Q  F  N  N  Q  R  L  L  *  *  C  Y  I  S  A  L  I  S  *  T  F  *  G  V  V  R  C  L  S  G  S  F  L  Q  K  L  G  A  I  E  *  G  L  N  I  R  A  R  L  G  H  I  R  Y  F  F  R  I  R  G  M  T  E  R  G  L  Q  L  I  C  S  T  K  N  A  S  S  V  Y  V  F  C  W  G  E  L  I  L  Q  C  S  S  F  L  Q  I  R  I  L  F  T  K  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101239" stop="101285"/>
                    <exon start="101360" stop="101411"/>
                    <exon start="102787" stop="102882"/>
                    <exon start="104118" stop="104135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDFLAHSCGFVVMGSFHQNSFPCCISSSPFFLVTLLVFLLMLVAAVLIWIGRGRNPIDSSVLARDWYCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102864" stop="102882"/>
                    <exon start="104118" stop="104182"/>
                    <exon start="104454" stop="104576"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FICSGSGLVLFLKMSKVRSERASSEMWKVAGLAVVSVLCFTLSELSPYSQIYPYVFCWSHEMSFVLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101030" e_stop="101285"/>
            <exon e_start="101360" e_stop="101411"/>
            <exon e_start="102787" e_stop="102882"/>
            <exon e_start="104118" e_stop="104182"/>
            <exon e_start="104454" e_stop="104527"/>
            <exon e_start="104606" e_stop="104628"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.972" e_score="0.985"/>
          <exon-intron don_prob="0.786" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101030" e_stop="101285" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101286" i_stop="101359" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101360" e_stop="101411" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.382">
            <gDNA_intron_boundary i_start="101412" i_stop="102786" i_length="1375"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102787" e_stop="102882" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102883" i_stop="104117" i_length="1235"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="104118" e_stop="104182" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.972">
            <gDNA_intron_boundary i_start="104183" i_stop="104453" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="104454" e_stop="104527" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.786" acc_prob="0.926">
            <gDNA_intron_boundary i_start="104528" i_stop="104605" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="104606" e_stop="104628" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101030" stop="101285"/>
              <exon start="101360" stop="101411"/>
              <exon start="102787" stop="102882"/>
              <exon start="104118" stop="104182"/>
              <exon start="104454" stop="104527"/>
              <exon start="104606" stop="104628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTTGGACATGGAACTTTGATAAACCACCTGTGCACGTGTATACAGTTATTTAAATACCTTACCTTTATCTTCTTTTATTTTTTACTTTCTGTGCATTTCATAAGGATCTTACTGTCCGGCAAGTAATAGTATGAATCGGTCATTAACTTTATTCTCCTGCAGGTTATTTCCTTTATTTTTTGTTGACAGTTGTTGCTGCATGTAAGGGTTGGATTTTCTGGCGCACTCCTGTGGCTTTGTTGTAATGGGTAG : CTTTCACCAGAATTCTTTTCCTTGCTGCATTTCTTCTTCTCCTTTCTTTCTG : GTTACCCTGTTAGTTTTTCTGTTAATGTTGGTAGCTGCTGTACTAATATGGATTGGGAGGGGAAGGAACCCTATTGATTCATCTGTTCTGGCTCGG : GACTGGTATTGTTCTTGAAAATGAGCAAAGTGAGATCTGAAAGGGCTTCATCAGAAATGTGGAAG : GTTGCAGGCTTGGCAGTTGTTTCTGTTCTATGTTTCACTTTAAGTGAGCTGTCGCCTTATTCACAGATATACCC : CTTCTTTTCAACTGGCGTGGACA</gDNA_template>
            <first_frame> *  F  W  T  W  N  F  D  K  P  P  V  H  V  Y  T  V  I  *  I  P  Y  L  Y  L  L  L  F  F  T  F  C  A  F  H  K  D  L  T  V  R  Q  V  I  V  *  I  G  H  *  L  Y  S  P  A  G  Y  F  L  Y  F  L  L  T  V  V  A  A  C  K  G  W  I  F  W  R  T  P  V  A  L  L  *  W  V   : A  F  T  R  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   L  P  C  *  F  F  C  *  C  W  *  L  L  Y  *  Y  G  L  G  G  E  G  T  L  L  I  H  L  F  W  L  G :   T  G  I  V  L  E  N  E  Q  S  E  I  *  K  G  F  I  R  N  V  E   : G  C  R  L  G  S  C  F  C  S  M  F  H  F  K  *  A  V  A  L  F  T  D  I  P  :  L  L  F  N  W  R  G   </first_frame>
            <second_frame>  N  F  G  H  G  T  L  I  N  H  L  C  T  C  I  Q  L  F  K  Y  L  T  F  I  F  F  Y  F  L  L  S  V  H  F  I  R  I  L  L  S  G  K  *  *  Y  E  S  V  I  N  F  I  L  L  Q  V  I  S  F  I  F  C  *  Q  L  L  L  H  V  R  V  G  F  S  G  A  L  L  W  L  C  C  N  G  *  :  L  S  P  E  F  F  S  L  L  H  F  F  F  S  F  L  S   : G  Y  P  V  S  F  S  V  N  V  G  S  C  C  T  N  M  D  W  E  G  K  E  P  Y  *  F  I  C  S  G  S   : G  L  V  L  F  L  K  M  S  K  V  R  S  E  R  A  S  S  E  M  W  K  :  V  A  G  L  A  V  V  S  V  L  C  F  T  L  S  E  L  S  P  Y  S  Q  I  Y  P :   F  F  S  T  G  V  D  </second_frame>
            <third_frame>   I  L  D  M  E  L  *  *  T  T  C  A  R  V  Y  S  Y  L  N  T  L  P  L  S  S  F  I  F  Y  F  L  C  I  S  *  G  S  Y  C  P  A  S  N  S  M  N  R  S  L  T  L  F  S  C  R  L  F  P  L  F  F  V  D  S  C  C  C  M  *  G  L  D  F  L  A  H  S  C  G  F  V  V  M  G  S :   F  H  Q  N  S  F  P  C  C  I  S  S  S  P  F  F  L  :  V  T  L  L  V  F  L  L  M  L  V  A  A  V  L  I  W  I  G  R  G  R  N  P  I  D  S  S  V  L  A  R  :  D  W  Y  C  S  *  K  *  A  K  *  D  L  K  G  L  H  Q  K  C  G  R :   L  Q  A  W  Q  L  F  L  F  Y  V  S  L  *  V  S  C  R  L  I  H  R  Y  T   : P  S  F  Q  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101239" stop="101285"/>
                    <exon start="101360" stop="101411"/>
                    <exon start="102787" stop="102882"/>
                    <exon start="104118" stop="104135"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLDFLAHSCGFVVMGSFHQNSFPCCISSSPFFLVTLLVFLLMLVAAVLIWIGRGRNPIDSSVLARDWYCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="105382" PGL_stop="106225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105453" e_stop="106225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="105453" e_stop="106225" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105453" stop="106225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105453" stop="106078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105524" stop="106225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCATGTGCATCATGATCTTGGCTAGGGAATATGTAGAAAATGCATGTTCTTTCATAAGGGCTATTCACTGATCAAATGAAATGGGAAAAAGTTGAAGACAAAGAACACAAATTATTTATCTCCTCGCACATTACACTAGGGACGGGAAATCATGGTAGGTGAAGCTATGTGTGTGAGAATCATTTTAGCTGTCCATTAAATTTTTCGTAAGATCCACAAACTCGCCAGAATTGCAGCTTAGCAGTTGAAAGACAACTTATACAAACATTGTTTTTTACCTTTCACCGAACATCAAAACCCAAAAGAGAATATGGAAGGAAGTGCAGAATCAATGAAGAACTCAACTTTCTGCACTGGAGGTCTTTCCACTCATTTATTGATTTTCATTATATTACATTCGTTGGATTTACAAACTTGTACCAATGTGTTCTGAGCATTGTGGATGCAGGTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTTGCCTAACAAAA</gDNA_template>
            <first_frame> S  H  V  H  H  D  L  G  *  G  I  C  R  K  C  M  F  F  H  K  G  Y  S  L  I  K  *  N  G  K  K  L  K  T  K  N  T  N  Y  L  S  P  R  T  L  H  *  G  R  E  I  M  V  G  E  A  M  C  V  R  I  I  L  A  V  H  *  I  F  R  K  I  H  K  L  A  R  I  A  A  *  Q  L  K  D  N  L  Y  K  H  C  F  L  P  F  T  E  H  Q  N  P  K  E  N  M  E  G  S  A  E  S  M  K  N  S  T  F  C  T  G  G  L  S  T  H  L  L  I  F  I  I  L  H  S  L  D  L  Q  T  C  T  N  V  F  *  A  L  W  M  Q  V  S  R  A  S  P  I  *  S  S  D  G  I  V  H  *  L  V  I  F  S  *  K  R  G  I  D  N  T  K  N  E  T  T  S  Q  L  S  G  W  C  C  G  *  V  I  E  E  S  S  T  Q  R  E  N  N  T  P  C  I  *  A  R  W  V  A  Q  G  I  H  A  C  I  T  W  I  S  V  Y  I  K  H  C  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  *  I  F  L  A  *  Q   </first_frame>
            <second_frame>  V  M  C  I  M  I  L  A  R  E  Y  V  E  N  A  C  S  F  I  R  A  I  H  *  S  N  E  M  G  K  S  *  R  Q  R  T  Q  I  I  Y  L  L  A  H  Y  T  R  D  G  K  S  W  *  V  K  L  C  V  *  E  S  F  *  L  S  I  K  F  F  V  R  S  T  N  S  P  E  L  Q  L  S  S  *  K  T  T  Y  T  N  I  V  F  Y  L  S  P  N  I  K  T  Q  K  R  I  W  K  E  V  Q  N  Q  *  R  T  Q  L  S  A  L  E  V  F  P  L  I  Y  *  F  S  L  Y  Y  I  R  W  I  Y  K  L  V  P  M  C  S  E  H  C  G  C  R  S  Q  G  R  A  P  Y  D  H  L  M  E  L  Y  I  D  W  *  F  S  A  R  N  E  G  L  T  I  L  K  M  R  Q  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  K  I  I  P  H  V  S  K  Q  G  G  L  L  R  V  Y  M  P  A  *  L  G  F  L  Y  I  S  N  I  A  M  N  F  P  N  F  T  D  S  F  L  L  I  *  *  G  F  R  F  F  L  P  N  K  </second_frame>
            <third_frame>   S  C  A  S  *  S  W  L  G  N  M  *  K  M  H  V  L  S  *  G  L  F  T  D  Q  M  K  W  E  K  V  E  D  K  E  H  K  L  F  I  S  S  H  I  T  L  G  T  G  N  H  G  R  *  S  Y  V  C  E  N  H  F  S  C  P  L  N  F  S  *  D  P  Q  T  R  Q  N  C  S  L  A  V  E  R  Q  L  I  Q  T  L  F  F  T  F  H  R  T  S  K  P  K  R  E  Y  G  R  K  C  R  I  N  E  E  L  N  F  L  H  W  R  S  F  H  S  F  I  D  F  H  Y  I  T  F  V  G  F  T  N  L  Y  Q  C  V  L  S  I  V  D  A  G  L  K  G  E  P  H  M  I  I  *  W  N  C  T  L  I  G  D  F  Q  L  E  T  R  D  *  Q  Y  *  K  *  D  N  F  S  V  E  W  L  V  L  W  L  S  D  R  R  K  L  N  S  T  G  K  *  Y  P  M  Y  L  S  K  V  G  C  S  G  Y  T  C  L  H  N  L  D  F  C  I  Y  Q  T  L  Q  *  T  F  Q  I  L  Q  I  L  F  C  *  Y  N  E  V  L  D  F  S  C  L  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105665" stop="105934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DPQTRQNCSLAVERQLIQTLFFTFHRTSKPKREYGRKCRINEELNFLHWRSFHSFIDFHYITFVGFTNLYQCVLSIVDAGLKGEPHMII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105382" e_stop="105399"/>
            <exon e_start="105903" e_stop="106214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105382" e_stop="105399" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="105400" i_stop="105902" i_length="503"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="105903" e_stop="106214" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105382" stop="105399"/>
              <exon start="105903" stop="106214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426636" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGTGTGCAAAATCAG : GTCTCAAGGGCGAGCCCCATATGATCATCTGATGGAATTGTACATTGATTGGTGATTTTCAGCTAGAAACGAGGGATTGACAATACTAAAAATGAGACAACTTCTCAGTTGAGTGGTTGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGGAAAATAATACCCCATGTATCTAAGCAAGGTGGGTTGCTCAGGGTATACATGCCTGCATAACTTGGATTTCTGTATATATCAAACATTGCAATGAACTTTCCAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAGATTTTTCTT</gDNA_template>
            <first_frame> A  S  V  Q  N  Q  :  V  S  R  A  S  P  I  *  S  S  D  G  I  V  H  *  L  V  I  F  S  *  K  R  G  I  D  N  T  K  N  E  T  T  S  Q  L  S  G  W  C  C  G  *  V  I  E  E  S  S  T  Q  R  E  N  N  T  P  C  I  *  A  R  W  V  A  Q  G  I  H  A  C  I  T  W  I  S  V  Y  I  K  H  C  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  *  I  F  L </first_frame>
            <second_frame>  Q  V  C  K  I  R :   S  Q  G  R  A  P  Y  D  H  L  M  E  L  Y  I  D  W  *  F  S  A  R  N  E  G  L  T  I  L  K  M  R  Q  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  K  I  I  P  H  V  S  K  Q  G  G  L  L  R  V  Y  M  P  A  *  L  G  F  L  Y  I  S  N  I  A  M  N  F  P  N  F  T  D  S  F  L  L  I  *  *  G  F  R  F  F   </second_frame>
            <third_frame>   K  C  A  K  S   : G  L  K  G  E  P  H  M  I  I  *  W  N  C  T  L  I  G  D  F  Q  L  E  T  R  D  *  Q  Y  *  K  *  D  N  F  S  V  E  W  L  V  L  W  L  S  D  R  R  K  L  N  S  T  G  K  *  Y  P  M  Y  L  S  K  V  G  C  S  G  Y  T  C  L  H  N  L  D  F  C  I  Y  Q  T  L  Q  *  T  F  Q  I  L  Q  I  L  F  C  *  Y  N  E  V  L  D  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="106212" PGL_stop="105981"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106212" e_stop="105981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="106212" e_stop="105981" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106212" stop="105981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAATCTAAAACCTCATTATATCAACAAAAAAGAATCTGTAAAATTTGGAAAGTTCATTGCAATGTTTGATATATACAGAAATCCAAGTTATGCAGGCATGTATACCCTGAGCAACCCACCTTGCTTAGATACATGGGGTATTATTTTCCCGTTGAGTTGAGCTTTCTTCGATCACTCAACCACAACACCAACCACTCAACTGAGAAGTTGTCTCATTTTTAGTATTGTC</gDNA_template>
            <first_frame> E  K  S  K  T  S  L  Y  Q  Q  K  R  I  C  K  I  W  K  V  H  C  N  V  *  Y  I  Q  K  S  K  L  C  R  H  V  Y  P  E  Q  P  T  L  L  R  Y  M  G  Y  Y  F  P  V  E  L  S  F  L  R  S  L  N  H  N  T  N  H  S  T  E  K  L  S  H  F  *  Y  C  </first_frame>
            <second_frame>  K  N  L  K  P  H  Y  I  N  K  K  E  S  V  K  F  G  K  F  I  A  M  F  D  I  Y  R  N  P  S  Y  A  G  M  Y  T  L  S  N  P  P  C  L  D  T  W  G  I  I  F  P  L  S  *  A  F  F  D  H  S  T  T  T  P  T  T  Q  L  R  S  C  L  I  F  S  I  V </second_frame>
            <third_frame>   K  I  *  N  L  I  I  S  T  K  K  N  L  *  N  L  E  S  S  L  Q  C  L  I  Y  T  E  I  Q  V  M  Q  A  C  I  P  *  A  T  H  L  A  *  I  H  G  V  L  F  S  R  *  V  E  L  S  S  I  T  Q  P  Q  H  Q  P  L  N  *  E  V  V  S  F  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="116679" PGL_stop="126317"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116679" e_stop="117097"/>
            <exon e_start="121152" e_stop="121202"/>
            <exon e_start="123276" e_stop="123309"/>
            <exon e_start="124866" e_stop="124952"/>
            <exon e_start="125024" e_stop="125075"/>
            <exon e_start="126273" e_stop="126317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.974"/>
          <exon-intron don_prob="0.990" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.568" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="116679" e_stop="117097" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="117098" i_stop="121151" i_length="4054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121152" e_stop="121202" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.967">
            <gDNA_intron_boundary i_start="121203" i_stop="123275" i_length="2073"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123276" e_stop="123309" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.541">
            <gDNA_intron_boundary i_start="123310" i_stop="124865" i_length="1556"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="124866" e_stop="124952" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.568">
            <gDNA_intron_boundary i_start="124953" i_stop="125023" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125024" e_stop="125075" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="125076" i_stop="126272" i_length="1197"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="126273" e_stop="126317" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116679" stop="117097"/>
              <exon start="121152" stop="121202"/>
              <exon start="123276" stop="123309"/>
              <exon start="124866" stop="124952"/>
              <exon start="125024" stop="125075"/>
              <exon start="126273" stop="126317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCAAAGAAAAAGATACCATCGAGGCTGCATAAAGAGAAAAAAAAGTAAGGGGAATTAGGAGAGTATCGTTTTGGATACCATTTCATTTTCTTTTTTACTTACTTCAAGACTTGTTTGTTGTAAGTGTTTTGGGTACATATATATACATATATACATATATATATATATATATATATATATATATATATATATAAGCTTATCATCATATTGTGTGTCCACGTTTTTTTCTCTGTATTAGAGGGGAAAGGGCTAAGAAGGATTGAGGCAGTGGATGGTTTTTTAAAAGGTAAAGAAAAAGAGTGAGAAGAACATGATTGAGTGGAGAGAAGGGACTTGTTATCCTAAGGCTTTAATGGGAGTGAATGTGGGTCTTGCTTCTGTCGATGCCGTTATTGCAGTTCTTGCTTTTGCTCAG : TTAATGAGAATTCACTCTCGGAATACACACAATGGCTGGACTCGTCAGAAA : GTATTTCACTTGATGATTGGATCTTCAAATTTGG : GTTATTTCCTTTATTTTATTTTGACAATTGTTGCCGCATGTAATGGTTGGATTTTCTGGTCGCACTCCTGTGGCTTTGTCGTTATGG : CTTTCCCCAAAATTCTTTTCCTTGCGGCATTTCTTCTTCTCCTTTCTTTCTG : GGTTGATCTTTGTCATCAGTCAAATGATGAAGAAGATGAAGATGA</gDNA_template>
            <first_frame> K  F  K  E  K  D  T  I  E  A  A  *  R  E  K  K  V  R  G  I  R  R  V  S  F  W  I  P  F  H  F  L  F  Y  L  L  Q  D  L  F  V  V  S  V  L  G  T  Y  I  Y  I  Y  T  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  *  A  Y  H  H  I  V  C  P  R  F  F  L  C  I  R  G  E  R  A  K  K  D  *  G  S  G  W  F  F  K  R  *  R  K  R  V  R  R  T  *  L  S  G  E  K  G  L  V  I  L  R  L  *  W  E  *  M  W  V  L  L  L  S  M  P  L  L  Q  F  L  L  L  L  S :   *  *  E  F  T  L  G  I  H  T  M  A  G  L  V  R  K :   Y  F  T  *  *  L  D  L  Q  I  W  :  V  I  S  F  I  L  F  *  Q  L  L  P  H  V  M  V  G  F  S  G  R  T  P  V  A  L  S  L  W  :  L  S  P  K  F  F  S  L  R  H  F  F  F  S  F  L  S   : G  L  I  F  V  I  S  Q  M  M  K  K  M  K  M  </first_frame>
            <second_frame>  N  S  K  K  K  I  P  S  R  L  H  K  E  K  K  K  *  G  E  L  G  E  Y  R  F  G  Y  H  F  I  F  F  F  T  Y  F  K  T  C  L  L  *  V  F  W  V  H  I  Y  T  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  K  L  I  I  I  L  C  V  H  V  F  F  S  V  L  E  G  K  G  L  R  R  I  E  A  V  D  G  F  L  K  G  K  E  K  E  *  E  E  H  D  *  V  E  R  R  D  L  L  S  *  G  F  N  G  S  E  C  G  S  C  F  C  R  C  R  Y  C  S  S  C  F  C  S   : V  N  E  N  S  L  S  E  Y  T  Q  W  L  D  S  S  E   : S  I  S  L  D  D  W  I  F  K  F  G :   L  F  P  L  F  Y  F  D  N  C  C  R  M  *  W  L  D  F  L  V  A  L  L  W  L  C  R  Y  G :   F  P  Q  N  S  F  P  C  G  I  S  S  S  P  F  F  L  :  G  *  S  L  S  S  V  K  *  *  R  R  *  R  * </second_frame>
            <third_frame>   I  Q  R  K  R  Y  H  R  G  C  I  K  R  K  K  S  K  G  N  *  E  S  I  V  L  D  T  I  S  F  S  F  L  L  T  S  R  L  V  C  C  K  C  F  G  Y  I  Y  I  H  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  S  L  S  S  Y  C  V  S  T  F  F  S  L  Y  *  R  G  K  G  *  E  G  L  R  Q  W  M  V  F  *  K  V  K  K  K  S  E  K  N  M  I  E  W  R  E  G  T  C  Y  P  K  A  L  M  G  V  N  V  G  L  A  S  V  D  A  V  I  A  V  L  A  F  A  Q  :  L  M  R  I  H  S  R  N  T  H  N  G  W  T  R  Q  K  :  V  F  H  L  M  I  G  S  S  N  L   : G  Y  F  L  Y  F  I  L  T  I  V  A  A  C  N  G  W  I  F  W  S  H  S  C  G  F  V  V  M   : A  F  P  K  I  L  F  L  A  A  F  L  L  L  L  S  F  W :   V  D  L  C  H  Q  S  N  D  E  E  D  E  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116966" stop="117097"/>
                    <exon start="121152" stop="121202"/>
                    <exon start="123276" stop="123309"/>
                    <exon start="124866" stop="124952"/>
                    <exon start="125024" stop="125075"/>
                    <exon start="126273" stop="126315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVKKKSEKNMIEWREGTCYPKALMGVNVGLASVDAVIAVLAFAQLMRIHSRNTHNGWTRQKVFHLMIGSSNLGYFLYFILTIVAACNGWIFWSHSCGFVVMAFPKILFLAAFLLLLSFWVDLCHQSNDEEDED</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="129668" PGL_stop="130577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129668" e_stop="129817"/>
            <exon e_start="130284" e_stop="130577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129668" e_stop="129817" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="129818" i_stop="130283" i_length="466"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="130284" e_stop="130577" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129668" stop="129817"/>
              <exon start="130284" stop="130577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATTTGTGCTATGGGTGATGAGAGAACTACCACCTCCACTTGTCACTTTCAGTCAACAGGAGTCGAGGACAATAGCTTTTATAAATGACAGTTCAGCGACAGTACAGCCTCAGCGATGGACAGCTGCTGCAAGTGTGCAAAATCAG : GTCTCAAGGGCGAGCCCCATATGATCACCGTGATGGAATTTGTAAATTGATTGGTGATTTTCAGCTAGAGTGAAGGACTGACAATACTAAAAATGAAAGAACTTCTCAGTTGAGTGGTCGGTGTTGTGGTTGAGTGATCGAAGAAAGCTCAACTCAACGGATAAAAAATACCCCTTGCAACTAAGTAAGGTGGTTGCTCAGGGTACACATGCCTGCATAACTTGGATTCTTGTACATAGCAATGAACTTTCTAAATTTTACAGATTCTTTTTTGTTGATATAATGAGGTTTTAG</gDNA_template>
            <first_frame> S  A  F  V  L  W  V  M  R  E  L  P  P  P  L  V  T  F  S  Q  Q  E  S  R  T  I  A  F  I  N  D  S  S  A  T  V  Q  P  Q  R  W  T  A  A  A  S  V  Q  N  Q  :  V  S  R  A  S  P  I  *  S  P  *  W  N  L  *  I  D  W  *  F  S  A  R  V  K  D  *  Q  Y  *  K  *  K  N  F  S  V  E  W  S  V  L  W  L  S  D  R  R  K  L  N  S  T  D  K  K  Y  P  L  Q  L  S  K  V  V  A  Q  G  T  H  A  C  I  T  W  I  L  V  H  S  N  E  L  S  K  F  Y  R  F  F  F  V  D  I  M  R  F  * </first_frame>
            <second_frame>  Q  H  L  C  Y  G  *  *  E  N  Y  H  L  H  L  S  L  S  V  N  R  S  R  G  Q  *  L  L  *  M  T  V  Q  R  Q  Y  S  L  S  D  G  Q  L  L  Q  V  C  K  I  R :   S  Q  G  R  A  P  Y  D  H  R  D  G  I  C  K  L  I  G  D  F  Q  L  E  *  R  T  D  N  T  K  N  E  R  T  S  Q  L  S  G  R  C  C  G  *  V  I  E  E  S  S  T  Q  R  I  K  N  T  P  C  N  *  V  R  W  L  L  R  V  H  M  P  A  *  L  G  F  L  Y  I  A  M  N  F  L  N  F  T  D  S  F  L  L  I  *  *  G  F   </second_frame>
            <third_frame>   S  I  C  A  M  G  D  E  R  T  T  T  S  T  C  H  F  Q  S  T  G  V  E  D  N  S  F  Y  K  *  Q  F  S  D  S  T  A  S  A  M  D  S  C  C  K  C  A  K  S   : G  L  K  G  E  P  H  M  I  T  V  M  E  F  V  N  *  L  V  I  F  S  *  S  E  G  L  T  I  L  K  M  K  E  L  L  S  *  V  V  G  V  V  V  E  *  S  K  K  A  Q  L  N  G  *  K  I  P  L  A  T  K  *  G  G  C  S  G  Y  T  C  L  H  N  L  D  S  C  T  *  Q  *  T  F  *  I  L  Q  I  L  F  C  *  Y  N  E  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130380" stop="130577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNFSVEWSVLWLSDRRKLNSTDKKYPLQLSKVVAQGTHACITWILVHSNELSKFYRFFFVDIMRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="133967" PGL_stop="130868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133967" e_stop="133592"/>
            <exon e_start="133477" e_stop="133253"/>
            <exon e_start="133078" e_stop="132968"/>
            <exon e_start="132244" e_stop="132183"/>
            <exon e_start="131375" e_stop="130868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.819" acc_prob="0.995" e_score="0.981"/>
          <exon-intron don_prob="0.845" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="133967" e_stop="133592" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.819" acc_prob="0.995">
            <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133477" e_stop="133253" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.845" acc_prob="0.998">
            <gDNA_intron_boundary i_start="133252" i_stop="133079" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133078" e_stop="132968" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.865" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132967" i_stop="132245" i_length="723"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132244" e_stop="132183" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.798">
            <gDNA_intron_boundary i_start="132182" i_stop="131376" i_length="807"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="131375" e_stop="130868" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133967" stop="133592"/>
              <exon start="133477" stop="133389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133939" stop="133683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133938" stop="133609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133931" stop="133592"/>
              <exon start="133477" stop="133317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133921" stop="133592"/>
              <exon start="133477" stop="133394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133904" stop="133592"/>
              <exon start="133477" stop="133283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133878" stop="133592"/>
              <exon start="133477" stop="133253"/>
              <exon start="133078" stop="132968"/>
              <exon start="132244" stop="132183"/>
              <exon start="131375" stop="131167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133878" stop="133592"/>
              <exon start="133477" stop="133377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133876" stop="133592"/>
              <exon start="133477" stop="133253"/>
              <exon start="133078" stop="133053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133868" stop="133592"/>
              <exon start="133477" stop="133253"/>
              <exon start="133078" stop="132988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133603" stop="133592"/>
              <exon start="133477" stop="133253"/>
              <exon start="133078" stop="132968"/>
              <exon start="132244" stop="132183"/>
              <exon start="131375" stop="131318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132238" stop="132183"/>
              <exon start="131375" stop="130868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC : ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTG : GTACCAGATGGACATGTTTGGATTGAAGGGGATAACAAATTCAATACCAACGATTCGAGGAACTTTGGACCTGTACCTTATGGACTTGTACAGGGCAGAGTCTTTTGGCTT : GTATGGCCTCCTGAAAATTTTGGATCAGTAGGAAGAGAAGTACAGTAAATCAACCTTTCAAG : ATTTGGAGTATGCTTGTAGAGTATTCTCTCACAAGCCTGGATTTTAAACAATTTACTGAAGATGGCAACTGGTGGGTTGCTTTACTACTTTGTTCGAGGTGGAAGACAGGACGCAAGAGCTGTTAAATATATTCGGTTAATGTATTTCTCTAGCTCCAAAGGGTGCACGGTTTTGCATAATTTGCTCTTGAAGTGCCACTGCTAATGCATTAGCTCGAAGGCTTCTTTTTCTATTTTACTTTGTCGTTGTTCTTCTTTCAAAAGAGTCGTTTGGACTAATGGGATTTGGCAGTCACTTCTCGTATAAACTTGAGCCTTTGTAGTCAGTGTTACCGCTGGGAAGTTACATGTACCTGGTCTCTAAGGTGCAGGCAAGCTTTGCCAAAACACAGCACTACATTTTAATTCTCATTTTTCTGATAGTTACATGTTCCTTTAAATAATACAGTAGTAAATTTTTTAATTTTAATTAACTGATGTATATATCCAAAAGCTAGGAGTTAAGCTA</gDNA_template>
            <first_frame> S  N  L  R  D  Y  C  R  K  Y  F  S  Q  L  S  L  H  R  R  M  H  N  *  T  T  K  F  R  A  V  F  A  V  R  Q  S  E  I  A  Q  L  N  S  G  G  R  V  R  R  R  V  E  V  W  V  T  V  V  L  F  R  L  I  L  S  S  I  L  I  G  E  I  A  S  L  G  L  R  C  R  L  T  N  N  G  S  E  K  S  E  A  I  D  A  F  Y  Q  R  S  I  S  A  N  I  T  R  S  Q  I  P  L  W  Y  S  C  G  Q  Q  L  Y  L  H  L  S  S   : H  S  R  S  K  H  A  S  N  V  *  S  D  W  R  S  C  F  G  *  K  A  I  N  S  V  *  E  N  A  T  W  R  C  S  A  S  A  *  P  *  E  P  E  K  N  C  D  Q  K  N  H  G  H  G  *  *  Y  C  *  I  C  C  G  S  C  K  *  W  N  R  T  Y  Y  C   : G  T  R  W  T  C  L  D  *  R  G  *  Q  I  Q  Y  Q  R  F  E  E  L  W  T  C  T  L  W  T  C  T  G  Q  S  L  L  A   : C  M  A  S  *  K  F  W  I  S  R  K  R  S  T  V  N  Q  P  F  K  :  I  W  S  M  L  V  E  Y  S  L  T  S  L  D  F  K  Q  F  T  E  D  G  N  W  W  V  A  L  L  L  C  S  R  W  K  T  G  R  K  S  C  *  I  Y  S  V  N  V  F  L  *  L  Q  R  V  H  G  F  A  *  F  A  L  E  V  P  L  L  M  H  *  L  E  G  F  F  F  Y  F  T  L  S  L  F  F  F  Q  K  S  R  L  D  *  W  D  L  A  V  T  S  R  I  N  L  S  L  C  S  Q  C  Y  R  W  E  V  T  C  T  W  S  L  R  C  R  Q  A  L  P  K  H  S  T  T  F  *  F  S  F  F  *  *  L  H  V  P  L  N  N  T  V  V  N  F  L  I  L  I  N  *  C  I  Y  P  K  A  R  S  *  A  </first_frame>
            <second_frame>  Q  T  *  G  T  I  V  E  N  I  F  L  N  F  L  Y  T  G  E  C  T  I  R  P  P  N  S  G  L  C  S  L  C  V  N  R  R  L  H  N  *  I  A  G  A  V  F  A  V  E  *  R  S  G  L  L  W  Y  S  F  A  *  F  C  H  P  F  *  L  V  R  *  P  L  *  G  *  D  A  D  *  L  I  M  G  L  K  N  L  K  Q  L  T  P  F  I  K  E  A  F  Q  Q  T  L  L  V  A  K  F  L  C  G  I  H  V  V  N  S  Y  I  C  T  L  A  L  :  T  Q  G  P  S  M  L  P  T  F  S  L  T  G  D  L  V  L  A  E  R  L  S  T  R  F  E  K  M  Q  R  G  D  V  V  L  V  R  S  P  E  N  P  R  K  I  V  I  K  R  I  M  G  M  G  S  D  T  V  R  Y  V  V  D  H  A  N  N  G  I  E  H  T  I  V  :  V  P  D  G  H  V  W  I  E  G  D  N  K  F  N  T  N  D  S  R  N  F  G  P  V  P  Y  G  L  V  Q  G  R  V  F  W  L  :  V  W  P  P  E  N  F  G  S  V  G  R  E  V  Q  *  I  N  L  S  R :   F  G  V  C  L  *  S  I  L  S  Q  A  W  I  L  N  N  L  L  K  M  A  T  G  G  L  L  Y  Y  F  V  R  G  G  R  Q  D  A  R  A  V  K  Y  I  R  L  M  Y  F  S  S  S  K  G  C  T  V  L  H  N  L  L  L  K  C  H  C  *  C  I  S  S  K  A  S  F  S  I  L  L  C  R  C  S  S  F  K  R  V  V  W  T  N  G  I  W  Q  S  L  L  V  *  T  *  A  F  V  V  S  V  T  A  G  K  L  H  V  P  G  L  *  G  A  G  K  L  C  Q  N  T  A  L  H  F  N  S  H  F  S  D  S  Y  M  F  L  *  I  I  Q  *  *  I  F  *  F  *  L  T  D  V  Y  I  Q  K  L  G  V  K  L </second_frame>
            <third_frame>   K  L  K  G  L  L  *  K  I  F  F  S  T  F  S  T  P  E  N  A  Q  L  D  H  Q  I  P  G  C  V  R  C  A  S  I  G  D  C  T  I  K  *  R  G  P  C  S  P  S  S  R  G  L  G  Y  C  G  T  L  S  P  D  S  V  I  H  F  N  W  *  D  S  L  F  R  V  E  M  Q  I  D  *  *  W  V  *  K  I  *  S  N  *  R  L  L  S  K  K  H  F  S  K  H  Y  S  *  P  N  S  S  V  V  F  M  W  S  T  A  I  S  A  P  *  L  S :   L  K  V  Q  A  C  F  Q  R  L  V  *  L  E  I  L  F  W  L  K  G  Y  Q  L  G  L  R  K  C  N  V  E  M  *  C  *  C  V  A  L  R  T  R  E  K  L  *  S  K  E  S  W  A  W  V  V  I  L  L  D  M  L  W  I  M  Q  I  M  E  *  N  I  L  L  W :   Y  Q  M  D  M  F  G  L  K  G  I  T  N  S  I  P  T  I  R  G  T  L  D  L  Y  L  M  D  L  Y  R  A  E  S  F  G  L :   Y  G  L  L  K  I  L  D  Q  *  E  E  K  Y  S  K  S  T  F  Q   : D  L  E  Y  A  C  R  V  F  S  H  K  P  G  F  *  T  I  Y  *  R  W  Q  L  V  G  C  F  T  T  L  F  E  V  E  D  R  T  Q  E  L  L  N  I  F  G  *  C  I  S  L  A  P  K  G  A  R  F  C  I  I  C  S  *  S  A  T  A  N  A  L  A  R  R  L  L  F  L  F  Y  F  V  V  V  L  L  S  K  E  S  F  G  L  M  G  F  G  S  H  F  S  Y  K  L  E  P  L  *  S  V  L  P  L  G  S  Y  M  Y  L  V  S  K  V  Q  A  S  F  A  K  T  Q  H  Y  I  L  I  L  I  F  L  I  V  T  C  S  F  K  *  Y  S  S  K  F  F  N  F  N  *  L  M  Y  I  S  K  S  *  E  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133723" stop="133592"/>
                    <exon start="133477" stop="133253"/>
                    <exon start="133078" stop="132968"/>
                    <exon start="132244" stop="132197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMGLKNLKQLTPFIKEAFQQTLLVAKFLCGIHVVNSYICTLALTQGPSMLPTFSLTGDLVLAERLSTRFEKMQRGDVVLVRSPENPRKIVIKRIMGMGSDTVRYVVDHANNGIEHTIVVPDGHVWIEGDNKFNTNDSRNFGPVPYGLVQGRVFWLVWPPENFGSVGREVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133967" e_stop="133592"/>
            <exon e_start="133477" e_stop="133251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.819" acc_prob="0.995" e_score="0.981"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="133967" e_stop="133592" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="0.819" acc_prob="0.995">
            <gDNA_intron_boundary i_start="133591" i_stop="133478" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="133477" e_stop="133251" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133967" stop="133592"/>
              <exon start="133477" stop="133389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133939" stop="133683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133938" stop="133609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133931" stop="133592"/>
              <exon start="133477" stop="133317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133921" stop="133592"/>
              <exon start="133477" stop="133394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133904" stop="133592"/>
              <exon start="133477" stop="133283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133878" stop="133592"/>
              <exon start="133477" stop="133251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133878" stop="133592"/>
              <exon start="133477" stop="133377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACTTAAGGGACTATTGTAGAAAATATTTTTCTCAACTTTCTCTACACCGGAGAATGCACAATTAGACCACCAAATTCCGGGCTGTGTTCGCTGTGCGTCAATCGGAGATTGCACAATTAAATAGCGGGGGCCGTGTTCGCCGTCGAGTAGAGGTCTGGGTTACTGTGGTACTCTTTCGCCTGATTCTGTCATCCATTTTAATTGGTGAGATAGCCTCTTTAGGGTTGAGATGCAGATTGACTAATAATGGGTCTGAAAAATCTGAAGCAATTGACGCCTTTTATCAAAGAAGCATTTCAGCAAACATTACTCGTAGCCAAATTCCTCTGTGGTATTCATGTGGTCAACAGCTATATCTGCACCTTAGCTCTC : ACTCAAGGTCCAAGCATGCTTCCAACGTTTAGTCTGACTGGAGATCTTGTTTTGGCTGAAAGGCTATCAACTCGGTTTGAGAAAATGCAACGTGGAGATGTAGTGCTAGTGCGTAGCCCTGAGAACCCGAGAAAAATTGTGATCAAAAGAATCATGGGCATGGGTAGTGATACTGTTAGATATGTTGTGGATCATGCAAATAATGGAATAGAACATACTATTGTGGT</gDNA_template>
            <first_frame> S  N  L  R  D  Y  C  R  K  Y  F  S  Q  L  S  L  H  R  R  M  H  N  *  T  T  K  F  R  A  V  F  A  V  R  Q  S  E  I  A  Q  L  N  S  G  G  R  V  R  R  R  V  E  V  W  V  T  V  V  L  F  R  L  I  L  S  S  I  L  I  G  E  I  A  S  L  G  L  R  C  R  L  T  N  N  G  S  E  K  S  E  A  I  D  A  F  Y  Q  R  S  I  S  A  N  I  T  R  S  Q  I  P  L  W  Y  S  C  G  Q  Q  L  Y  L  H  L  S  S   : H  S  R  S  K  H  A  S  N  V  *  S  D  W  R  S  C  F  G  *  K  A  I  N  S  V  *  E  N  A  T  W  R  C  S  A  S  A  *  P  *  E  P  E  K  N  C  D  Q  K  N  H  G  H  G  *  *  Y  C  *  I  C  C  G  S  C  K  *  W  N  R  T  Y  Y  C  G </first_frame>
            <second_frame>  Q  T  *  G  T  I  V  E  N  I  F  L  N  F  L  Y  T  G  E  C  T  I  R  P  P  N  S  G  L  C  S  L  C  V  N  R  R  L  H  N  *  I  A  G  A  V  F  A  V  E  *  R  S  G  L  L  W  Y  S  F  A  *  F  C  H  P  F  *  L  V  R  *  P  L  *  G  *  D  A  D  *  L  I  M  G  L  K  N  L  K  Q  L  T  P  F  I  K  E  A  F  Q  Q  T  L  L  V  A  K  F  L  C  G  I  H  V  V  N  S  Y  I  C  T  L  A  L  :  T  Q  G  P  S  M  L  P  T  F  S  L  T  G  D  L  V  L  A  E  R  L  S  T  R  F  E  K  M  Q  R  G  D  V  V  L  V  R  S  P  E  N  P  R  K  I  V  I  K  R  I  M  G  M  G  S  D  T  V  R  Y  V  V  D  H  A  N  N  G  I  E  H  T  I  V   </second_frame>
            <third_frame>   K  L  K  G  L  L  *  K  I  F  F  S  T  F  S  T  P  E  N  A  Q  L  D  H  Q  I  P  G  C  V  R  C  A  S  I  G  D  C  T  I  K  *  R  G  P  C  S  P  S  S  R  G  L  G  Y  C  G  T  L  S  P  D  S  V  I  H  F  N  W  *  D  S  L  F  R  V  E  M  Q  I  D  *  *  W  V  *  K  I  *  S  N  *  R  L  L  S  K  K  H  F  S  K  H  Y  S  *  P  N  S  S  V  V  F  M  W  S  T  A  I  S  A  P  *  L  S :   L  K  V  Q  A  C  F  Q  R  L  V  *  L  E  I  L  F  W  L  K  G  Y  Q  L  G  L  R  K  C  N  V  E  M  *  C  *  C  V  A  L  R  T  R  E  K  L  *  S  K  E  S  W  A  W  V  V  I  L  L  D  M  L  W  I  M  Q  I  M  E  *  N  I  L  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133723" stop="133592"/>
                    <exon start="133477" stop="133253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIMGLKNLKQLTPFIKEAFQQTLLVAKFLCGIHVVNSYICTLALTQGPSMLPTFSLTGDLVLAERLSTRFEKMQRGDVVLVRSPENPRKIVIKRIMGMGSDTVRYVVDHANNGIEHTIV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133898" stop="133592"/>
                    <exon start="133477" stop="133446"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKFRAVFAVRQSEIAQLNSGGRVRRRVEVWVTVVLFRLILSSILIGEIASLGLRCRLTNNGSEKSEAIDAFYQRSISANITRSQIPLWYSCGQQLYLHLSSHSRSKHASNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="137082" PGL_stop="137529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137082" e_stop="137529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="137082" e_stop="137529" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137082" stop="137403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137082" stop="137387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137083" stop="137529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAAAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGAGTAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTAGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTGG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  G  K  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  R  N  *  V  I  R  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  E  K  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I  E  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  F  V  Y  K  A  R  E  A  S  E  N  G  E  *  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  W </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  S  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  S  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0122F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="140465" PGL_stop="143965"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="140465" e_stop="140583"/>
            <exon e_start="141185" e_stop="141320"/>
            <exon e_start="141731" e_stop="141904"/>
            <exon e_start="142486" e_stop="143965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.588" acc_prob="0.989" e_score="0.950"/>
          <exon-intron don_prob="0.802" acc_prob="0.941" e_score="0.993"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="140465" e_stop="140583" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.588" acc_prob="0.989">
            <gDNA_intron_boundary i_start="140584" i_stop="141184" i_length="601"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="141185" e_stop="141320" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.802" acc_prob="0.941">
            <gDNA_intron_boundary i_start="141321" i_stop="141730" i_length="410"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="141731" e_stop="141904" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="141905" i_stop="142485" i_length="581"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="142486" e_stop="143965" e_length="1480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140465" stop="140583"/>
              <exon start="141185" stop="141320"/>
              <exon start="141731" stop="141904"/>
              <exon start="142486" stop="142833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140490" stop="140583"/>
              <exon start="141185" stop="141320"/>
              <exon start="141731" stop="141904"/>
              <exon start="142486" stop="142517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140492" stop="140583"/>
              <exon start="141185" stop="141320"/>
              <exon start="141731" stop="141904"/>
              <exon start="142486" stop="142713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141807" stop="141904"/>
              <exon start="142486" stop="142804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141829" stop="141904"/>
              <exon start="142486" stop="142948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141872" stop="141904"/>
              <exon start="142486" stop="143060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="141873" stop="141904"/>
              <exon start="142486" stop="142882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142596" stop="143132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142648" stop="143347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142665" stop="143275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142714" stop="143237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142753" stop="143060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142760" stop="143338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143246" stop="143959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143270" stop="143959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143403" stop="143856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143403" stop="143856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143683" stop="143965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCACGAGCTTCTGCTTCAACATTTGCATCTGACACTCACCTCTTCCCTCTCTAGAAAAAAAATTCAGAAAATCTAGTGAAGAAACAACAAAGATCTTTTTTTTTTTTTTCATTTGG : TGGCTTGGATTGAAGACTATAATATACTGCACTGGACCAATCAACATGCCGTGGGCATTTTCTTCTCTGAGTTATTGTGTGAAGTGTGTGCGCTTTGTGGTATTCTTTCGTGTGATTCTGTAACCCATTTTACTTG : ATTGCGGAATCACTTTATTTTCTGTCTTGTGATATTTCTTGATACTAGTCTATTTGGAGGTTGAGAATGTACATTGCGATTACCTTGAAGAGATACAGAGCAGTTAAAGAAGCTGGTGAGATTAAAATGCATGTGGGGAGTGTTGCTTATTACCAATTGATGCTAGTTTGTCAG : GCTGAGTACTTCCGTCAGTTGCTTAAACCTGTAACGTAGTCTGCTAAAGTGTAAGCTTTGGGGAGGTTGGGATTGCTTACTTCTTGTTGCTCTTATTCAGCAAAGCCTTGTTGAAGTTGGGATTTGTTGCTTCTCTTTCAGTGTATACGAAATCAGAATGACCTCATTAAGCACTGAATGTGGTTACTGTTGATTGGAATTGTCAGTGCTTTTTACTACAACTAATACACCTTGAACATTACTCTCTTTTGCCTGTGCCTTTCGTAACTCTTAGCTACTTTAATTTTTAAAACATCCCAAGTGGAAAACACTTTTCTAGTCCAGTTTATTGGATCTTTGACTTAGTTACTCATGCAGAATAACTATCAATTTTCCCCTCAAATTCAAAAGCCTTTTGTCTCTCTGGAAGACCAAGCAGCTGGTGGTAATATATTTGATATTCCTGTTCCATCCGTCTTTGATACAATGGCACTTCCTACTAGTTTCAAATCTTCTGTGCCCTTTCATGGTTTTGAATTTCGGTCCTCTGAGGCATGTCCAAAGAATTTCATCATCTTTGATCAGACTGATTACCGGAGCCAGATCATGTACCACCCTGCCATGACCTCCAAATTCCCATATCCTGATCTGAATTATAATTCAACTTGCTTCCACGACTGCATGGAGAGAAAAATTGCAAACAATGAGAATACAGAAGTTTCTTCATATCTGAAGGAAGATTCAGATGATATAAATGCATTGCTCAGCTTGGAAGAGGAAGAATGTGAGGAATATGATGAAGAAGAGGTGAGCACTGCACGCACTGATGCAAACTATGGATGCAGTTCCCCTGAATCATACTCAAACTATCATTGTCAATCCAAAAAGAGCAGGACCTCTTCTTTCAGGGAATCCTCTGGTAGCAGTACTAGCAATTGCAGTGAGAGAAAACGCAGGAAACTTAAGAAGATGGTCAAGGCATTAAAGGGAATCGTCCCTGGTGCCAGCAGGATGAATACTGTCACCGTTCTTGATGAAGCTGTCAGATACCTCAAGTCACTTAAGGTGGAAGTGCAGAAGCTTGGAGTCGATAATCTGAAGACATATGCCTGATATCCTTTGTGGTATAGGTAATTTCGCTTCCTTTATCACCGTCACATGATTATGAACCCTAGTCATATCTTTTGCTTATGTGAAGAAGAACTACTTATACCGTCGTATTGCTGAGTTGCTGCTCTGGAGGGGGTAACGTAACGTAGAATATGGTCCTTTGTCCAGCGATAGGACAATAAGTCTGCTGTAGTAGCTAGCTGCTATATCTAATTTCTCATTCTAGCATATAGTATGTTTCCACTAGTTGCAAACTCTATTAAGGCATTTGAATAATTTCTCCAATATGTGACACTCTTTCACCTATTGGAGCTGCTATTTGTTATTGTTGTTGTATGACTTTGATGATTTGTTTTAATGGATAATGGGTTGATGATTACACTTTATGCAA</gDNA_template>
            <first_frame> K  P  R  A  S  A  S  T  F  A  S  D  T  H  L  F  P  L  *  K  K  N  S  E  N  L  V  K  K  Q  Q  R  S  F  F  F  F  S  F  G :   G  L  D  *  R  L  *  Y  T  A  L  D  Q  S  T  C  R  G  H  F  L  L  *  V  I  V  *  S  V  C  A  L  W  Y  S  F  V  *  F  C  N  P  F  Y  L  :  I  A  E  S  L  Y  F  L  S  C  D  I  S  *  Y  *  S  I  W  R  L  R  M  Y  I  A  I  T  L  K  R  Y  R  A  V  K  E  A  G  E  I  K  M  H  V  G  S  V  A  Y  Y  Q  L  M  L  V  C  Q  :  A  E  Y  F  R  Q  L  L  K  P  V  T  *  S  A  K  V  *  A  L  G  R  L  G  L  L  T  S  C  C  S  Y  S  A  K  P  C  *  S  W  D  L  L  L  L  F  Q  C  I  R  N  Q  N  D  L  I  K  H  *  M  W  L  L  L  I  G  I  V  S  A  F  Y  Y  N  *  Y  T  L  N  I  T  L  F  C  L  C  L  S  *  L  L  A  T  L  I  F  K  T  S  Q  V  E  N  T  F  L  V  Q  F  I  G  S  L  T  *  L  L  M  Q  N  N  Y  Q  F  S  P  Q  I  Q  K  P  F  V  S  L  E  D  Q  A  A  G  G  N  I  F  D  I  P  V  P  S  V  F  D  T  M  A  L  P  T  S  F  K  S  S  V  P  F  H  G  F  E  F  R  S  S  E  A  C  P  K  N  F  I  I  F  D  Q  T  D  Y  R  S  Q  I  M  Y  H  P  A  M  T  S  K  F  P  Y  P  D  L  N  Y  N  S  T  C  F  H  D  C  M  E  R  K  I  A  N  N  E  N  T  E  V  S  S  Y  L  K  E  D  S  D  D  I  N  A  L  L  S  L  E  E  E  E  C  E  E  Y  D  E  E  E  V  S  T  A  R  T  D  A  N  Y  G  C  S  S  P  E  S  Y  S  N  Y  H  C  Q  S  K  K  S  R  T  S  S  F  R  E  S  S  G  S  S  T  S  N  C  S  E  R  K  R  R  K  L  K  K  M  V  K  A  L  K  G  I  V  P  G  A  S  R  M  N  T  V  T  V  L  D  E  A  V  R  Y  L  K  S  L  K  V  E  V  Q  K  L  G  V  D  N  L  K  T  Y  A  *  Y  P  L  W  Y  R  *  F  R  F  L  Y  H  R  H  M  I  M  N  P  S  H  I  F  C  L  C  E  E  E  L  L  I  P  S  Y  C  *  V  A  A  L  E  G  V  T  *  R  R  I  W  S  F  V  Q  R  *  D  N  K  S  A  V  V  A  S  C  Y  I  *  F  L  I  L  A  Y  S  M  F  P  L  V  A  N  S  I  K  A  F  E  *  F  L  Q  Y  V  T  L  F  H  L  L  E  L  L  F  V  I  V  V  V  *  L  *  *  F  V  L  M  D  N  G  L  M  I  T  L  Y  A  </first_frame>
            <second_frame>  N  H  E  L  L  L  Q  H  L  H  L  T  L  T  S  S  L  S  R  K  K  I  Q  K  I  *  *  R  N  N  K  D  L  F  F  F  F  H  L   : V  A  W  I  E  D  Y  N  I  L  H  W  T  N  Q  H  A  V  G  I  F  F  S  E  L  L  C  E  V  C  A  L  C  G  I  L  S  C  D  S  V  T  H  F  T  * :   L  R  N  H  F  I  F  C  L  V  I  F  L  D  T  S  L  F  G  G  *  E  C  T  L  R  L  P  *  R  D  T  E  Q  L  K  K  L  V  R  L  K  C  M  W  G  V  L  L  I  T  N  *  C  *  F  V  R :   L  S  T  S  V  S  C  L  N  L  *  R  S  L  L  K  C  K  L  W  G  G  W  D  C  L  L  L  V  A  L  I  Q  Q  S  L  V  E  V  G  I  C  C  F  S  F  S  V  Y  E  I  R  M  T  S  L  S  T  E  C  G  Y  C  *  L  E  L  S  V  L  F  T  T  T  N  T  P  *  T  L  L  S  F  A  C  A  F  R  N  S  *  L  L  *  F  L  K  H  P  K  W  K  T  L  F  *  S  S  L  L  D  L  *  L  S  Y  S  C  R  I  T  I  N  F  P  L  K  F  K  S  L  L  S  L  W  K  T  K  Q  L  V  V  I  Y  L  I  F  L  F  H  P  S  L  I  Q  W  H  F  L  L  V  S  N  L  L  C  P  F  M  V  L  N  F  G  P  L  R  H  V  Q  R  I  S  S  S  L  I  R  L  I  T  G  A  R  S  C  T  T  L  P  *  P  P  N  S  H  I  L  I  *  I  I  I  Q  L  A  S  T  T  A  W  R  E  K  L  Q  T  M  R  I  Q  K  F  L  H  I  *  R  K  I  Q  M  I  *  M  H  C  S  A  W  K  R  K  N  V  R  N  M  M  K  K  R  *  A  L  H  A  L  M  Q  T  M  D  A  V  P  L  N  H  T  Q  T  I  I  V  N  P  K  R  A  G  P  L  L  S  G  N  P  L  V  A  V  L  A  I  A  V  R  E  N  A  G  N  L  R  R  W  S  R  H  *  R  E  S  S  L  V  P  A  G  *  I  L  S  P  F  L  M  K  L  S  D  T  S  S  H  L  R  W  K  C  R  S  L  E  S  I  I  *  R  H  M  P  D  I  L  C  G  I  G  N  F  A  S  F  I  T  V  T  *  L  *  T  L  V  I  S  F  A  Y  V  K  K  N  Y  L  Y  R  R  I  A  E  L  L  L  W  R  G  *  R  N  V  E  Y  G  P  L  S  S  D  R  T  I  S  L  L  *  *  L  A  A  I  S  N  F  S  F  *  H  I  V  C  F  H  *  L  Q  T  L  L  R  H  L  N  N  F  S  N  M  *  H  S  F  T  Y  W  S  C  Y  L  L  L  L  L  Y  D  F  D  D  L  F  *  W  I  M  G  *  *  L  H  F  M  Q </second_frame>
            <third_frame>   T  T  S  F  C  F  N  I  C  I  *  H  S  P  L  P  S  L  E  K  K  F  R  K  S  S  E  E  T  T  K  I  F  F  F  F  F  I  W  :  W  L  G  L  K  T  I  I  Y  C  T  G  P  I  N  M  P  W  A  F  S  S  L  S  Y  C  V  K  C  V  R  F  V  V  F  F  R  V  I  L  *  P  I  L  L   : D  C  G  I  T  L  F  S  V  L  *  Y  F  L  I  L  V  Y  L  E  V  E  N  V  H  C  D  Y  L  E  E  I  Q  S  S  *  R  S  W  *  D  *  N  A  C  G  E  C  C  L  L  P  I  D  A  S  L  S   : G  *  V  L  P  S  V  A  *  T  C  N  V  V  C  *  S  V  S  F  G  E  V  G  I  A  Y  F  L  L  L  L  F  S  K  A  L  L  K  L  G  F  V  A  S  L  S  V  Y  T  K  S  E  *  P  H  *  A  L  N  V  V  T  V  D  W  N  C  Q  C  F  L  L  Q  L  I  H  L  E  H  Y  S  L  L  P  V  P  F  V  T  L  S  Y  F  N  F  *  N  I  P  S  G  K  H  F  S  S  P  V  Y  W  I  F  D  L  V  T  H  A  E  *  L  S  I  F  P  S  N  S  K  A  F  C  L  S  G  R  P  S  S  W  W  *  Y  I  *  Y  S  C  S  I  R  L  *  Y  N  G  T  S  Y  *  F  Q  I  F  C  A  L  S  W  F  *  I  S  V  L  *  G  M  S  K  E  F  H  H  L  *  S  D  *  L  P  E  P  D  H  V  P  P  C  H  D  L  Q  I  P  I  S  *  S  E  L  *  F  N  L  L  P  R  L  H  G  E  K  N  C  K  Q  *  E  Y  R  S  F  F  I  S  E  G  R  F  R  *  Y  K  C  I  A  Q  L  G  R  G  R  M  *  G  I  *  *  R  R  G  E  H  C  T  H  *  C  K  L  W  M  Q  F  P  *  I  I  L  K  L  S  L  S  I  Q  K  E  Q  D  L  F  F  Q  G  I  L  W  *  Q  Y  *  Q  L  Q  *  E  K  T  Q  E  T  *  E  D  G  Q  G  I  K  G  N  R  P  W  C  Q  Q  D  E  Y  C  H  R  S  *  *  S  C  Q  I  P  Q  V  T  *  G  G  S  A  E  A  W  S  R  *  S  E  D  I  C  L  I  S  F  V  V  *  V  I  S  L  P  L  S  P  S  H  D  Y  E  P  *  S  Y  L  L  L  M  *  R  R  T  T  Y  T  V  V  L  L  S  C  C  S  G  G  G  N  V  T  *  N  M  V  L  C  P  A  I  G  Q  *  V  C  C  S  S  *  L  L  Y  L  I  S  H  S  S  I  *  Y  V  S  T  S  C  K  L  Y  *  G  I  *  I  I  S  P  I  C  D  T  L  S  P  I  G  A  A  I  C  Y  C  C  C  M  T  L  M  I  C  F  N  G  *  W  V  D  D  Y  T  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142831" stop="143577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLMQNNYQFSPQIQKPFVSLEDQAAGGNIFDIPVPSVFDTMALPTSFKSSVPFHGFEFRSSEACPKNFIIFDQTDYRSQIMYHPAMTSKFPYPDLNYNSTCFHDCMERKIANNENTEVSSYLKEDSDDINALLSLEEEECEEYDEEEVSTARTDANYGCSSPESYSNYHCQSKKSRTSSFRESSGSSTSNCSERKRRKLKKMVKALKGIVPGASRMNTVTVLDEAVRYLKSLKVEVQKLGVDNLKTYA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="140500" stop="140583"/>
                    <exon start="141185" stop="141307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSPLPSLEKKFRKSSEETTKIFFFFFIWWLGLKTIIYCTGPINMPWAFSSLSYCVKCVRFVVFFRVIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="143969" PGL_stop="143384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143969" e_stop="143384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="143969" e_stop="143384" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143969" stop="143384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCTTGCATAAAGTGTAATCATCAACCCATTATCCATTAAAACAAATCATCAAAGTCATACAACAACAATAACAAATAGCAGCTCCAATAGGTGAAAGAGTGTCACATATTGGAGAAATTATTCAAATGCCTTAATAGAGTTTGCAACTAGTGGAAACATACTATATGCTAGAATGAGAAATTAGATATAGCAGCTAGCTACTACAGCAGACTTATTGTCCTATCGCTGGACAAAGGACCATATTCTACGTTACGTTACCCCCTCCAGAGCAGCAACTCAGCAATACGACGGTATAAGTAGTTCTTCTTCACATAAGCAAAAGATATGACTAGGGTTCATAATCATGTGACGGTGATAAAGGAAGCGAAATTACCTATACCACAAAGGATATCAGGCATATGTCTTCAGATTATCGACTCCAAGCTTCTGCACTTCCACCTTAAGTGACTTGAGGTATCTGACAGCTTCATCAAGAACGGTGACAGTATTCATCCTGCTGGCACCAGGGACGATTCCCTTTAATGCCTTGACCATCTTCTTAAGTTTCCTGCGTTTTCTCTCACTGCAATTGCTAGTACTGCTAC</gDNA_template>
            <first_frame> T  L  A  *  S  V  I  I  N  P  L  S  I  K  T  N  H  Q  S  H  T  T  T  I  T  N  S  S  S  N  R  *  K  S  V  T  Y  W  R  N  Y  S  N  A  L  I  E  F  A  T  S  G  N  I  L  Y  A  R  M  R  N  *  I  *  Q  L  A  T  T  A  D  L  L  S  Y  R  W  T  K  D  H  I  L  R  Y  V  T  P  S  R  A  A  T  Q  Q  Y  D  G  I  S  S  S  S  S  H  K  Q  K  I  *  L  G  F  I  I  M  *  R  *  *  R  K  R  N  Y  L  Y  H  K  G  Y  Q  A  Y  V  F  R  L  S  T  P  S  F  C  T  S  T  L  S  D  L  R  Y  L  T  A  S  S  R  T  V  T  V  F  I  L  L  A  P  G  T  I  P  F  N  A  L  T  I  F  L  S  F  L  R  F  L  S  L  Q  L  L  V  L  L  </first_frame>
            <second_frame>  R  L  H  K  V  *  S  S  T  H  Y  P  L  K  Q  I  I  K  V  I  Q  Q  Q  *  Q  I  A  A  P  I  G  E  R  V  S  H  I  G  E  I  I  Q  M  P  *  *  S  L  Q  L  V  E  T  Y  Y  M  L  E  *  E  I  R  Y  S  S  *  L  L  Q  Q  T  Y  C  P  I  A  G  Q  R  T  I  F  Y  V  T  L  P  P  P  E  Q  Q  L  S  N  T  T  V  *  V  V  L  L  H  I  S  K  R  Y  D  *  G  S  *  S  C  D  G  D  K  G  S  E  I  T  Y  T  T  K  D  I  R  H  M  S  S  D  Y  R  L  Q  A  S  A  L  P  P  *  V  T  *  G  I  *  Q  L  H  Q  E  R  *  Q  Y  S  S  C  W  H  Q  G  R  F  P  L  M  P  *  P  S  S  *  V  S  C  V  F  S  H  C  N  C  *  Y  C  Y </second_frame>
            <third_frame>   A  C  I  K  C  N  H  Q  P  I  I  H  *  N  K  S  S  K  S  Y  N  N  N  N  K  *  Q  L  Q  *  V  K  E  C  H  I  L  E  K  L  F  K  C  L  N  R  V  C  N  *  W  K  H  T  I  C  *  N  E  K  L  D  I  A  A  S  Y  Y  S  R  L  I  V  L  S  L  D  K  G  P  Y  S  T  L  R  Y  P  L  Q  S  S  N  S  A  I  R  R  Y  K  *  F  F  F  T  *  A  K  D  M  T  R  V  H  N  H  V  T  V  I  K  E  A  K  L  P  I  P  Q  R  I  S  G  I  C  L  Q  I  I  D  S  K  L  L  H  F  H  L  K  *  L  E  V  S  D  S  F  I  K  N  G  D  S  I  H  P  A  G  T  R  D  D  S  L  *  C  L  D  H  L  L  K  F  P  A  F  S  L  T  A  I  A  S  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0122F06.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143609" stop="143385"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKRNYLYHKGYQAYVFRLSTPSFCTSTLSDLRYLTASSRTVTVFILLAPGTIPFNALTIFLSFLRFLSLQLLVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 342 chains have been computed
$ 
$ memory statistics:
$ 1005736 bytes spliced alignments in total
$ 229 spliced alignments have been stored
$ 4391 bytes was the average size of a spliced alignment
$ 41920 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1612 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 392 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:15:23
-->
