<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:01:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740792" ref_strand="+" ref_description="SGN-E740792 [LC22DF04]">
      <seq>caattctctccttttttcagagaaatgaaagtgcccttttccactaatgataacgtaagttctaaacaattggttaacagcaacaacagctttacttttccagccgctaccaacggttctaatttgtgctacgaacctaagtcagtgctcgagctccgtcgtagcccaagtcctatagttgataagcagattataacaacgaatcctgatttgtctgctctttgtggtggtgaagatcctcttcaattaggagatcatgttctgagtaactttgaagattgggattctttgatgagagaacttggcttgcacgacgattctgcttcgctttcaaaaacgaatcctctcacccacagcgaatcgctgactcagttccataatctctccgagttttcagctgaatcgaatcagtttcctagtcctgatttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagccgtgcttgaggcagttgacggctccatgctagtccacgtcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="4864" stop="6337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5164" g_stop="6037" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E740792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5164" e_stop="6037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCG</genome_strand>
        <mrna_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAACAATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739290" ref_strand="+" ref_description="SGN-E739290 [LC16DD06]">
      <seq>catttctctccttttttcagagaaatgaaagtgcccttttccactaatgataacgtaagttctaagccattggttaacagcaacaacagctttacttttccagccgctaccaacggttctaatttgtgctacgaacctaagtcagtgctcgagctccgtcgtagcccaagtcctatagttgataagcagattataacaacgaatcctgatttgtctgctctttgtggtggtgaagatcctcttcaattaggagatcatgttctgagtaactttgaagattgggattctttgatgagagaacttggcttgcacgacgattctgcttcgctttcaaaaacgaatcctctcacccacagcgaatcgctgactcagttccataatctctccgagttttcagctgaatcgaatcagtttcctagtcctgatttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="4864" stop="6293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5164" g_stop="5993" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E739290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5164" e_stop="5993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGC</genome_strand>
        <mrna_strand>CATTTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391651" ref_strand="+" ref_description="SGN-E391651 [TUS-24-K19]">
      <seq>tttttctttctcacacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcgcgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttctagttcctccgacgtaattcatacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaagccgtgcttgaggcagttgaggggggggggggggggtccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="5289" stop="6314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5589" g_stop="6013" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E391651" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5589" e_stop="6013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACG</genome_strand>
        <mrna_strand>TTTTTCTTTCTCACACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCGCGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCTAGTTCCTCCGACGTAATTCATACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAAGCCGTGCTTGAGGCAGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246758" ref_strand="+" ref_description="SGN-E246758 [cLEF-45-D14]">
      <seq>ttttctttctcagacactaatttccctcagcagtttccgacggtgaatcaggcaagtttcatcaacgcccttgatctctccggggatatccaccagaattggagcgtaggatttgattatgtggatgaactcattcgttttgctgagtgtttcgaaacaaacgctttccaactcgcacatgtgatactggcacgcctcaatcaacggctcagatccgcagcaggaaaacctctccaacgagctgccttttacttcaaggaagcacttcaagcgcagctcgccggatcagctcggcaaactcgttcttcaagttcctccgacgtaattcaaacgattaaatcttataaaatattgtcaaatatttctccgatccctatgttctctagcttcacggcgaatcaggccgtgcttgaggcagttgacggctccatgctagtccacgtcatcgatttcgacatcggacttggtggtcactgggcttacttcatgaaagagttagccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="5290" stop="6392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5590" g_stop="6092" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E246758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5590" e_stop="6092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGA</genome_strand>
        <mrna_strand>TTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTACTTCATGAAAGAGTTAGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595323" ref_strand="+" ref_description="SGN-E595323 [38593]">
      <seq>ctcaaatatttctccgatccctatgttctctagcttcacggcgaatcaggccgtgcttgaggcagttgacggctcgatgctagtccacgtcatcgatttcgacatcggacttggtggtcactgggcttccttcatgaaagagttagccgattgccgtaaagccaacgcgccggttcttcgaattacggctctagttcctgaagaatacgctgtggaatcaaggttaattagagaaaatttaacccaatttgctcgtgaactcaatatcggttttgaaattgattttgttctaattcgcacattcgaattgttatccttcaaagcgataaagttcatggagggagagaagacagcggtgcttttatctcccgctatcttccgacgggtcgggtcagggtttgttaacgacctccgtcgtatatcccctaacgtggtggtacacgtggacagcgaaggacttatgggttacggtgcgatgtctttccggcagacagtgatcgacgggctggaattttactctacactactggaatcactggaggcagcaaatatcggtggtggaaattgcggggattggatgaggaaaatagagaatttcgtgctgttccctaagatagttgatatgatcggagcagtagggcggcgtggaggttggaggatcgtggaaggatgcgatgatgggtgccggattccggccggtgggattaagccagtttgcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="5644" stop="6972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5943" g_stop="6672" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E595323" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5943" e_stop="6672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGACAAAGCCGAGTGCCGTAAAGCCAACGCGCCGATCCTTAGAATTACGGCTCTAGTTCCTGAAGAGTACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTCGAAATTGATTTTGTCCTAATTCGTACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTAAATGAACTCCGTCGAATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCAATGTCTTTCCGGCAGACAGTAATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGG-TGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGAT</genome_strand>
        <mrna_strand>CTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCGATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTT---------AGCCGATTGCCGTAAAGCCAACGCGCCGGTTCTTCGAATTACGGCTCTAGTTCCTGAAGAATACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTTGAAATTGATTTTGTTCTAATTCGCACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTTAACGACCTCCGTCGTATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCGATGTCTTTCCGGCAGACAGTGATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGGAAAATAGAGAATTTCGTGCTGTTCCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTTGGAGGATCGTGGAAGGATGCGATGATGGGTGCCGGATTCCGGCCGGTGGGATTAAGCCAGTTTGCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409999" ref_strand="+" ref_description="SGN-E409999 [PPI-15-B12]">
      <seq>cggggattggatgaggaaaatagagaacttcgtgctgttccctaagatagttgatgtgatcggagcagtagggcggcgtggaggtggaggatcgtggaaggatgcgatgatgggtgccggatttcggccggtgggattaagccagtttgcggattttcaagcagattgtttattgggtagggtacaggtaagaggattccacgtggcaaagagacaagcagagatgttgctttgctggcatgatagggccctagtagccacgtcagcttggaggtgttaataataataataataaaactaaccctaaactatagttttaatttaataatagcagtgatttggatctttagctgtatggtttcagttttaggggttgggtttagcatatataacaatagattaagaaaaaaaaaactcaaaagaaagttgcatggtctttttttttctttatccaattgtattggtaactatctatcttttgtaattttgtagcttaatttggagtctttaaggttgatgtctctaattagtggataattgcaatttgtaactcattcactatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="6219" stop="7384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6519" g_stop="7084" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E409999" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6519" e_stop="7084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGACAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAAT-A-AAT----CTAACCCTAAAC--TAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGG-TTCAGTTTTAGGGGTT-GGCTTAGCATATATAACAATAGATTAAGAAGAAGAAAAAAAGAAAAAACTCAAAAGAAAGTTGCATGGTCCTTTTCTTTTCTTTCTCCAATTGTGTTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTC-TCAAGGTTGGTGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</genome_strand>
        <mrna_strand>CGGGGATTGGATGAGGAAAATAGAGAACTTCGTGCTGTTCCCTAAGATAGTTGATGTGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAAGGATGCGATGATGGGTGCCGGATTTCGGCCGGTGGGATTAAGCCAGTTTGCGGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGATAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAATAATAATAAAACTAACCCTAAACTATAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGGTTTCAGTTTTAGGGGTTGGGTTTAGCATATATAACAATAGATT------AAG---AAAA-AAAAAACTCAAAAGAAAGTTGCATGGT-CTTTTTTTTTCTTTATCCAATTGTATTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTCTTTAAGGTTGATGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745233" ref_strand="+" ref_description="SGN-E745233 [GI|456752]">
      <seq>atgcctccttatgggactccagttccatatccagctttatatcctcctgccggagtttatgctcatcctaacattgccacgccggctccaaattctgtgccggcaaatcctgaagcagatgggaaggggcctgaaggaaaggatcggaattcaagtaaaaagttaaaggtctgttctggtggtaaggcaggcgacaatgggaaagttacttcaggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttcgagatggagccagtgcacagaataatcctgcgaaagagaatcacccgacttctatacatggaatctgtaccatgcctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagcgatcaaaatacagcaaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaggaacgtgaacttaaaaggcaaaagagaaagcaatctaatagggagtcagctaggaggtcgaggctccgcaagcaggcagagtgtgaagagctacaacgtagagtagaagctttgagccatgagaatcattcactcaaagatgagctccaacggctctctgaggaatgtgagaagcttacctcggagaataatttaattaaggaagagttaacgctactttgtggaccagacgttgtgtctaagctggagagaaacgataatgtcacacgtattcaatctaatgttgaagaagctagttaaggagaagtggaaaagccaggactgagtaggtgatttttggttacaaagtgctcacagatcattgcctttttggttacaaagtgctcacagatcattgcctttttggtgcagtgtttgttgtcctactaacctataccctcctttaactcccttctgagtatgactgtaacatatatttcttatgattctaaccccagtgttaaaagagtcttgagtctgtttaacttagtctttaaattaacttcagtagctcagaaagtcttcaagtgaatgttaacgaggcacccaaccacatgggttgtggtaccctggtggaattgctttagctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="12860" stop="7064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12560" g_stop="12480" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12479" i_stop="12353" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12352" g_stop="12192" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="242" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12191" i_stop="12108" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12107" g_stop="12053" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="297" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12052" i_stop="11920" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11919" g_stop="11871" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="346" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11870" i_stop="11789" i_length="82">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11788" g_stop="11583" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="549" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11582" i_stop="10773" i_length="810">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10772" g_stop="10695" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="627" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10694" i_stop="8175" i_length="2520">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8174" g_stop="8049" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="753" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8048" i_stop="7767" i_length="282">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.769" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7766" g_stop="7360" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="1193" r_length="440" r_score="0.813"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E745233" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1163</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12560" e_stop="12480"/>
          <exon e_start="12352" e_stop="12192"/>
          <exon e_start="12107" e_stop="12053"/>
          <exon e_start="11919" e_stop="11871"/>
          <exon e_start="11788" e_stop="11583"/>
          <exon e_start="10772" e_stop="10695"/>
          <exon e_start="8174" e_stop="8049"/>
          <exon e_start="7766" e_stop="7360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACGGTAATCAAGCTTATCTGTAATTTATTCTTATGAATTTGAAAGCTGATGAAAGCAAGTTACCTCTTCTTCCCAAAAGAAAAAATACAAAAAGACAGATCATGCTAATATTTTGTTCACGTATTTTCAGCCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAGGTACTTTTTCTTTTCTTTAGCTCTTCACTCACTGAAATCAGTACTGTCGTTGTCGTTCTTAACCAGATTTGTATATCCTTCAAATTCGCCAGTCTACCTGCTTATCGATCTTTTAAAAAGCATGCATATTCCACACATCTAGTAGCAGATGGTATTAGTGAAGGTGGAATATTTTCTGATTACACAAAGTTGTCTGTGTATCTTGATTCTTAGCACAGAGACTTCCATATTAGTGTGCAAATGAAATGGCTGAAATGACTAATTTGTGAACGAAGATCACAACCTGGAGAAAGTCATGAAAGCATCCAACACCCTGATTTTATAAGGCTTCAGATGTTTTGGTTAGTCCAAAAATAGCCTAGACTAGTAATACGCCAGAAAACTCCTGAAGAGTGAAGACATGTCAGTTTCGTTCTTTATGGGATAAAATAACCTGTTTGTAGGATACAATTTTCTAATCTAATTTATTGCCATAACAATTTCTGAACATATGGTTCATTAGTTATTAAACATGCTTCATCTTGATATTTCCATCTCTGGGTACATCAGCACCTTGTGCTGTTTTGAAGTTCATTGTTCTACTTCACGACATACCCTATCACTACATAAAAGTTACATTCATGATTATTTCAAGTAGATCAATAAATTATGTAACACTCGAGAGAGGAGAGACAACTTTTTACATCCCACATCCCTTTCATTTTTGTGTGCAAGAGGGAGTACACACTCAATGATGGCGTTATATCCTTGTCATCATCGTTTTTCCGTTTCATTTTGTTGATAAATTTCGTTATAACCCTCCCGTAACAGGAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAGGTATGACTTAACTTTTAATAGATAATGTTACTCTTTCCATCTTTAACCAGTTAGAGTTGACTGTATGTCTTTTATTGTTAGTTCTCTTTGTGGATTTAGACTAGGGGTGGCAAATGGGCGATTCGAGCTAAATTTGGGCGGGGTTGGGCAATGCCCAACTTGTCTTTTACCTACATTTATTAGCTTATAAATTTAATAGTAATAATTCTATTTTTCTTTATAAGCAAAATAGTTGTTTTAATTTCTCCATTTTGATTGATTAACATTAGAACTTCACTGATTTCATTATTTTTTTCCTTTGTAGCTTTCACATTTAATTAGTCCAGTAATTACTTGCAGAAAAAATTGCACGAAAATTAGAACCACTCAAAAACTACATGGTTTTACTTAATTGAGAAATCTGCAGATTACTTTCAATGAATTCATCAGAAAATTTGACAATGACTTTAGTACTTCATACAAAAAATTAAAGATGACTTTCTGTTACTTCGACCGAGAAGTTTGATAATGACGACATGTATTAGATATGCTAAAGATTGTTAACTATTGAATAGATGAATTTTATTCCAGAAGGGCTCCAACTTTTTTATATTTTTATCTCTGTCTTTGTGATTTTCTAATTATTTTCTAGTTAGGTTTTTTGGGTCAATTTTGCCAACCCTAGTTCAGACTCAGACATTTGCTTGAGGCAGAGAGAGCCTTAAAATCATCCTTTTTACGCCATCATATGGCACATTGATCTTTTTGCATTGTCGTCTAGCCAGATAAACTTACATTGATGCTGCAAGTTCTTGTTTCATCCGAATCCTCAATGTCTTGTGATGATGTTTTTTCTAGTTGATGGGAACACATTTGTATCACGTTTATGAAATGGTCTCCAGCATAAATTATAAGCACCTAAGAATATGGGAATACAATTCGATGTTATATCTACATATCACATGCTCTAATCTGCAGACTGTTTTACGGCCCTAGCAACTATAACTTACTTTCTTAGTTTTTTCCTTTTCTTGCGCACCCCCCCCCCCACCCCAACAAGATCATGTGTCTCTCTTCATATTTCGATTTGTGAAGACAATGGACAATCACATGAGAGAAAAATTCGAGTTGGGGAACACAAATGAACGGATGGTATGTATAAAAATTGGAATATAATGTGAAAAAGCGACAGCAGATGCATTCATATCAAATATCAACTAAAACAGACCACTTATAGATAGTCTCCCTTAAACCACTATCTTCCTGAAGGCTGATAACCTGTTCTCAAAAGTAAGTCTATCCTAGCTATCTCCCAATCCTTTCCAAAGAGAATCTTATATCAAGTCCTAGTATAGCCTCTTTTATGGACCATTAATCAATAACATCCCAAGAATCAAGATGCTGTTACTTTACTTGAAAGTACCAACATTACATTCTTACAAGTTCTGAGTACTGAAAAACAATATGCAGCTTTATGTTTGCGGTTTTCCTCTCACCTTATAGATTTAATTGTTAATTAAAACTACTGATCCCTTCTGATGTGAAACTGTTTCCTTATGTTCCTAGCCAAACCATACTGTGTAAACGTAGGGAGTAAAAAGTATCATTTTGAGAGACATGGTTGGGCAAGTGCAGCCACTGATGTCGAATATACCCTCCTCTAACTGTCAGTTAAGATCTTGAAAACACCTTTATCCATCCTGAGTTTGATGGGTTTAACTGAATAGGAAATGGATAGACGCGTAAATACCATTATAACTTCTCATGGAATGGGGGGATTAATGCGTAACTTAGATGTATCCAACCAAAAGGATTAAGGAGAAAAATATAAGTGCAATAAGAATGCTCCTCACATCTTTACCACTATCAGTTCACCCAGATGTAGTCAGCTCTACTGTTTTCTCCTAATGATAGTTATTTGTTAAAATTAAATTGGAACAGGAAGTGATGGTAAGTGTCATCAAATTAATGCCAAGAAACCAAGGAAATAGCTGCTTTTCATTTTAGTGGAGACGCGGAAAAAGAAAGAACAGAAATCTTGGTTTGGTTCTTATTTGCCGTAGTTAAACAAACAGATTATGCTGTGAACGGATAAGTTATTATCCATTATTTGGGACCGAGGGAGAATATTCACCTACATTCGGTGTATACACTGAGACTGGTAGATTAGTGGATGATTGGAACCATTGTGAGAGTGTCACTTTCACTATAAGATAGGACAGAAATTTGTCCATGGAGTTCATCGTTGTGCATGTGGATGTTTTCTGTCATTGTATTTGACATCTCTTTAGAAAGAAGTAACAACGTGTGTTTGTAACATTTCTACCATTAGCCCATACAAAAACATGATATTCCTTTCTGTTCATGTTACAACAGCAACTAGCATTTCGATGAGACAGCAAACAAGCTGCTTTTAACTCTTGACCATTGTTCATGTGTGTTTGGTCGTTTGCTTGCACCAATTGCTGGAGAACCCAGAATGTGCTCTAAATTTCTTTTAGATCTTCTGACAGTAATGTATTACGTTGTGTATTTTCGCAGGCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAGGTACTTTACACCTTCATAAGTATTCCTCTGAACTTTTGTCCTCCTTGATTTTTCGTTCTTCTCTTTCTCAAGTACACTGTTCTTGTCATCCCCTGTTTTCTTTCCCCTCTGTGACACTGAATAGGGGCACACAGTTCTGATTCGTGAATAGCTTTTTGTTATAACAAAAATGTGAGACCGTTTATTATCATTGAATCTCTCGCTGCATACATACATTCATCGTTTTGTGAAGGTGAGAAAAATGAAATTACTGATATTTGTTGGAATATGATGGTGAAACAGGAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGAC--------TGA------G-T----AG-G-T----G---A-----TTTTT-GTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCCTTTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAACTAGATGTC</genome_strand>
        <mrna_strand>ATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACG...............................................................................................................................CCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTCGAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGG-AAT-CTGT-ACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAG..........................................................................................................................................................................................................................................................................................GAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGACTGAGTAGGTGATTTTTGGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCC-TTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434905" ref_strand="+" ref_description="SGN-E434905 [STM-60-N15]">
      <seq>gttctggtggcaaggcaggcgacaatgggaaagttacttcgggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttgcagatggagccagtgcacagaataatcctgcaaaagagaatcacccgacttctatacatggaaatcctgtcaccgtacctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagctatcaaactacagccaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaggaacgtgaacttaaaaggcaaaagagaaagcaatctaatagggagtcagctaggaggtcaaggctccgcaagcaggcagagtgtgaagagctacaacgtagagtagaagcattgagccatgagaatcattcactcaaagatgagctccaacggctctctgaggaatgtgagaagcttacctcggagaataattcgataaaggaagagttaatactactttgtggaccagacgttgtgtctaagctagagaggaacgatattgccgcacgtatttcatctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="12561" stop="7384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12261" g_stop="12192" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12191" i_stop="12108" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12107" g_stop="12053" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="125" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12052" i_stop="11920" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11919" g_stop="11871" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="174" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11870" i_stop="11789" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11788" g_stop="11583" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="380" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11582" i_stop="10773" i_length="810">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10772" g_stop="10695" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="458" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10694" i_stop="8175" i_length="2520">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8174" g_stop="8049" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="584" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8048" i_stop="7767" i_length="282">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.769" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7766" g_stop="7684" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="667" r_length="83" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E434905" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12261" e_stop="12192"/>
          <exon e_start="12107" e_stop="12053"/>
          <exon e_start="11919" e_stop="11871"/>
          <exon e_start="11788" e_stop="11583"/>
          <exon e_start="10772" e_stop="10695"/>
          <exon e_start="8174" e_stop="8049"/>
          <exon e_start="7766" e_stop="7684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAGGTACTTTTTCTTTTCTTTAGCTCTTCACTCACTGAAATCAGTACTGTCGTTGTCGTTCTTAACCAGATTTGTATATCCTTCAAATTCGCCAGTCTACCTGCTTATCGATCTTTTAAAAAGCATGCATATTCCACACATCTAGTAGCAGATGGTATTAGTGAAGGTGGAATATTTTCTGATTACACAAAGTTGTCTGTGTATCTTGATTCTTAGCACAGAGACTTCCATATTAGTGTGCAAATGAAATGGCTGAAATGACTAATTTGTGAACGAAGATCACAACCTGGAGAAAGTCATGAAAGCATCCAACACCCTGATTTTATAAGGCTTCAGATGTTTTGGTTAGTCCAAAAATAGCCTAGACTAGTAATACGCCAGAAAACTCCTGAAGAGTGAAGACATGTCAGTTTCGTTCTTTATGGGATAAAATAACCTGTTTGTAGGATACAATTTTCTAATCTAATTTATTGCCATAACAATTTCTGAACATATGGTTCATTAGTTATTAAACATGCTTCATCTTGATATTTCCATCTCTGGGTACATCAGCACCTTGTGCTGTTTTGAAGTTCATTGTTCTACTTCACGACATACCCTATCACTACATAAAAGTTACATTCATGATTATTTCAAGTAGATCAATAAATTATGTAACACTCGAGAGAGGAGAGACAACTTTTTACATCCCACATCCCTTTCATTTTTGTGTGCAAGAGGGAGTACACACTCAATGATGGCGTTATATCCTTGTCATCATCGTTTTTCCGTTTCATTTTGTTGATAAATTTCGTTATAACCCTCCCGTAACAGGAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAGGTATGACTTAACTTTTAATAGATAATGTTACTCTTTCCATCTTTAACCAGTTAGAGTTGACTGTATGTCTTTTATTGTTAGTTCTCTTTGTGGATTTAGACTAGGGGTGGCAAATGGGCGATTCGAGCTAAATTTGGGCGGGGTTGGGCAATGCCCAACTTGTCTTTTACCTACATTTATTAGCTTATAAATTTAATAGTAATAATTCTATTTTTCTTTATAAGCAAAATAGTTGTTTTAATTTCTCCATTTTGATTGATTAACATTAGAACTTCACTGATTTCATTATTTTTTTCCTTTGTAGCTTTCACATTTAATTAGTCCAGTAATTACTTGCAGAAAAAATTGCACGAAAATTAGAACCACTCAAAAACTACATGGTTTTACTTAATTGAGAAATCTGCAGATTACTTTCAATGAATTCATCAGAAAATTTGACAATGACTTTAGTACTTCATACAAAAAATTAAAGATGACTTTCTGTTACTTCGACCGAGAAGTTTGATAATGACGACATGTATTAGATATGCTAAAGATTGTTAACTATTGAATAGATGAATTTTATTCCAGAAGGGCTCCAACTTTTTTATATTTTTATCTCTGTCTTTGTGATTTTCTAATTATTTTCTAGTTAGGTTTTTTGGGTCAATTTTGCCAACCCTAGTTCAGACTCAGACATTTGCTTGAGGCAGAGAGAGCCTTAAAATCATCCTTTTTACGCCATCATATGGCACATTGATCTTTTTGCATTGTCGTCTAGCCAGATAAACTTACATTGATGCTGCAAGTTCTTGTTTCATCCGAATCCTCAATGTCTTGTGATGATGTTTTTTCTAGTTGATGGGAACACATTTGTATCACGTTTATGAAATGGTCTCCAGCATAAATTATAAGCACCTAAGAATATGGGAATACAATTCGATGTTATATCTACATATCACATGCTCTAATCTGCAGACTGTTTTACGGCCCTAGCAACTATAACTTACTTTCTTAGTTTTTTCCTTTTCTTGCGCACCCCCCCCCCCACCCCAACAAGATCATGTGTCTCTCTTCATATTTCGATTTGTGAAGACAATGGACAATCACATGAGAGAAAAATTCGAGTTGGGGAACACAAATGAACGGATGGTATGTATAAAAATTGGAATATAATGTGAAAAAGCGACAGCAGATGCATTCATATCAAATATCAACTAAAACAGACCACTTATAGATAGTCTCCCTTAAACCACTATCTTCCTGAAGGCTGATAACCTGTTCTCAAAAGTAAGTCTATCCTAGCTATCTCCCAATCCTTTCCAAAGAGAATCTTATATCAAGTCCTAGTATAGCCTCTTTTATGGACCATTAATCAATAACATCCCAAGAATCAAGATGCTGTTACTTTACTTGAAAGTACCAACATTACATTCTTACAAGTTCTGAGTACTGAAAAACAATATGCAGCTTTATGTTTGCGGTTTTCCTCTCACCTTATAGATTTAATTGTTAATTAAAACTACTGATCCCTTCTGATGTGAAACTGTTTCCTTATGTTCCTAGCCAAACCATACTGTGTAAACGTAGGGAGTAAAAAGTATCATTTTGAGAGACATGGTTGGGCAAGTGCAGCCACTGATGTCGAATATACCCTCCTCTAACTGTCAGTTAAGATCTTGAAAACACCTTTATCCATCCTGAGTTTGATGGGTTTAACTGAATAGGAAATGGATAGACGCGTAAATACCATTATAACTTCTCATGGAATGGGGGGATTAATGCGTAACTTAGATGTATCCAACCAAAAGGATTAAGGAGAAAAATATAAGTGCAATAAGAATGCTCCTCACATCTTTACCACTATCAGTTCACCCAGATGTAGTCAGCTCTACTGTTTTCTCCTAATGATAGTTATTTGTTAAAATTAAATTGGAACAGGAAGTGATGGTAAGTGTCATCAAATTAATGCCAAGAAACCAAGGAAATAGCTGCTTTTCATTTTAGTGGAGACGCGGAAAAAGAAAGAACAGAAATCTTGGTTTGGTTCTTATTTGCCGTAGTTAAACAAACAGATTATGCTGTGAACGGATAAGTTATTATCCATTATTTGGGACCGAGGGAGAATATTCACCTACATTCGGTGTATACACTGAGACTGGTAGATTAGTGGATGATTGGAACCATTGTGAGAGTGTCACTTTCACTATAAGATAGGACAGAAATTTGTCCATGGAGTTCATCGTTGTGCATGTGGATGTTTTCTGTCATTGTATTTGACATCTCTTTAGAAAGAAGTAACAACGTGTGTTTGTAACATTTCTACCATTAGCCCATACAAAAACATGATATTCCTTTCTGTTCATGTTACAACAGCAACTAGCATTTCGATGAGACAGCAAACAAGCTGCTTTTAACTCTTGACCATTGTTCATGTGTGTTTGGTCGTTTGCTTGCACCAATTGCTGGAGAACCCAGAATGTGCTCTAAATTTCTTTTAGATCTTCTGACAGTAATGTATTACGTTGTGTATTTTCGCAGGCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAGGTACTTTACACCTTCATAAGTATTCCTCTGAACTTTTGTCCTCCTTGATTTTTCGTTCTTCTCTTTCTCAAGTACACTGTTCTTGTCATCCCCTGTTTTCTTTCCCCTCTGTGACACTGAATAGGGGCACACAGTTCTGATTCGTGAATAGCTTTTTGTTATAACAAAAATGTGAGACCGTTTATTATCATTGAATCTCTCGCTGCATACATACATTCATCGTTTTGTGAAGGTGAGAAAAATGAAATTACTGATATTTGTTGGAATATGATGGTGAAACAGGAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGT</genome_strand>
        <mrna_strand>GTTCTGGTGGCAAGGCAGGCGACAATGGGAAAGTTACTTCGGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCAAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCGTACCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCTATCAAACTACAGCCAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCAAGGCTCCGCAAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCATTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTCGATAAAG..........................................................................................................................................................................................................................................................................................GAAGAGTTAATACTACTTTGTGGACCAGACGTTGTGTCTAAGCTAGAGAGGAACGATATTGCCGCACGTATTTCATCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409445" ref_strand="+" ref_description="SGN-E409445 [PPI-14-I3]">
      <seq>gttctggtggcaaggcaggcgacaatgggaaagttacttcgggttccggaaatgatggtgccacacaaagtgatgaaagcagaagtgaaggtacatcagatacaaatgatgaaaatgataacaatgaatttgctgcaaacaagaagggaagctttgatcaaatgcttgcagatggagccagtgcacagaataatcctgcaaaagagaatcacccgacttctatacatggaaatcctgtcaccgtacctgcaactaacctaaatattggaatggacgtgtggaatgcatcagctgccggtcctggagctatcaaactacagccaaatgcaactggtccagttataggacatgaaggaaggatgaatgatcagtggattcaggaagaacgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="12561" stop="11280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12261" g_stop="12192" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12191" i_stop="12108" i_length="84">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12107" g_stop="12053" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="125" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12052" i_stop="11920" i_length="133">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11919" g_stop="11871" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="174" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11870" i_stop="11789" i_length="82">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11788" g_stop="11583" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="380" r_length="206" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E409445" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12261" e_stop="12192"/>
          <exon e_start="12107" e_stop="12053"/>
          <exon e_start="11919" e_stop="11871"/>
          <exon e_start="11788" e_stop="11583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAGGTCTGATTATGAATCATATTTCTGCAAAAATTCTTCATTATGGATCATTCATGCATCTGATTGTTTTATTTTTTTCGTGAACAGTGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAATGTAAGTATTCAGTCCGCCCCTGACCACTTCTTTCTTTGTTTACATGCCATGGAGATCATGAGTTTCAATTTTATCCTTACCTTGTCCCGCAATGGCTAGTTGGAACTTTTTTTGATCATATGCCATCTCACAGGAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATGGTAACTTCTGTGAGCTCTCTTCTTGATTCTGCCATTATTATTATCAACAAATAATTGAGTTTCTAACTATGGTGATTATCAGGAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG</genome_strand>
        <mrna_strand>GTTCTGGTGGCAAGGCAGGCGACAATGGGAAAGTTACTTCGGGTTCCGGAAATGATGGTGCCACACAAAG....................................................................................TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT.....................................................................................................................................GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG..................................................................................GAGCCAGTGCACAGAATAATCCTGCAAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCGTACCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCTATCAAACTACAGCCAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355615" ref_strand="+" ref_description="SGN-E355615 [cLHT-1-I8]">
      <seq>ctgttttctttatggctgctctttgtttaggataatttttttcttcttaaatctctttgggggtgggataaaaaacttaactttttggaaaatccgacttggaaccttcttgttccacctcagattcagtacacagcctttcgctgagcaagccatttttggtttattcccgtggatacctgcatatacaattgattgacccaatgggagctggggaagagagcactcctacaaagacttcaaagcctcctttaactcaggagacaccaaccgcaccttcatatcctgattggtcaagctctatgcaggcttattatagtgctggagctactcctttttttgcctcacctgttgcttctcctgctccccacccatacatgtggggaggtcagcatcctcttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="17802" stop="12385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17502" g_stop="17367" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17366" i_stop="13165" i_length="4202">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13164" g_stop="13041" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="260" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13040" i_stop="12906" i_length="135">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12905" g_stop="12858" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="308" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12857" i_stop="12772" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12771" g_stop="12685" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="392" r_length="84" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12684" i_stop="12570" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.631" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12569" g_stop="12556" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="406" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E355615" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17502" e_stop="17367"/>
          <exon e_start="13164" e_stop="13041"/>
          <exon e_start="12905" e_stop="12858"/>
          <exon e_start="12771" e_stop="12685"/>
          <exon e_start="12569" e_stop="12556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAACAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCACTACACAGGTCAGCTCTCCCCACCACCTTTACTTTCACTGTTTTTTTCTTCTTGCTTTCTAGTATTTGTTTATCAATTGTTTGATTTTGTGTTTGCTAGCACCTTAACATGCTTTTTAGTTATCAGCGGTTTTCATTCACAATGACCGACAGAATTATCCTTAAGGAATTAGATTTTAAAATTGGGATCTTTTTAGTTGTCAGGGGTTTTCTTGATTCTTGTTACTGTTGAATAGTTTTGATTTTTTTTTTTTAATTTTGGAGTTTGATGATCAATTTAGCATGTTCAAAAGGTTTCTTGAAAGTTAGTTCTTGCAATTAAGTTGGTGAATTTTGACAAAAGAAAACCCAATTCTCTGACCAGCTTTGTGTTGTGAATTAGATGCCTATGATTCAAATCTTTTTTGGGTTTAAGTAGACTTTCCAAAATTCTCCATTTGTTCCTTGGGTATAATATCTTTTGCTGTAAGCTGTGAATGACATGTTTCTTAAGCGACATTACACCGAAATTTGGTTAATCTGACTAACATTGGAAGTATTCTTTTAAGCTAGATTGATTAACCTTTATTTATCAATAAAAAGGAAATTAATACAAATTAGATGGTGTTTCTTGGTTTTGGAGGAGGAATGTGGAAATAATAGGCGCTCTTGACTATTGCGAAGTTGGTTTGTTTCCACAAAAGATCTTCCCCTGGGGGAGTTGTCAAGTATAGCCTGACTGAAATTGGTTGTGATGTTCAAGATTGTGTTTTGTTTGCTATTCAAGTTAGAATGATCCTGAGTTTAAAAAATAAGTTAGAATGATCTTTGTGATTTTAATCCTTTGTAAAACTTGATAAGTGTAACTCAACATGAACAAGCTGTGTTTTCTTTTGAGGAATCAGCTTCTAATTGAGCATCAAACACGCATCACAAATTTATTGTTTAGTAATAAAATTGATTCGGCAAAAAACCAGGGAAAATTTTACATACATTACTGCCTTTAAGAATATAAAATATTGAACTGGCCATCCACAACCTATTTTTCTACTATTTTTTTGTTTCTTTTTCTCAACTTGAAATTGTTGTATTAGTTAGACTCTGCGAGGAATGATTGCATAAGATTTTGCTTCTTCTATAATGAATTTGAATACATGCTCGTAAAATGATGTAGTTTTGCCTAGTTTTCTTTGCTATACAATGCACTTTTAATTGTTTCAACTATAATTATGTCATGTCAATAGTGGGGCGGCTTGGCGTTGGTGAGCATTTGGAAAATACATTATTTGGATATTAGGTTAAGCATTCTATTTCGTAGTGGACATTATTGCCATTTATTTGTAAGAAAAGTGAACAAAAACTGTGCCTGAAGATGGTGTACATAGATGTTGGCTATATTCTTTAAGCAAAAACACCAATATTAGGCTTAGAAAGATTTAACATCAAGAAGACATGTTTAATTTTGTCAACTGTTTTTGCAATCAGTCATTTGTGCAGGATTGGCATTCTGTTTTTGTTGCAATTCGTCTTTATGGGAATGATGTTGAAGCCATGAAAAGTATGGACTAGCAACCATTAAGGAAAAACTTGACCTTTATTAATGAATGTCATTATCTGTGTTTTGGACTTTGATTAAGACTGGGCGACGGAATGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGCATACGGGACGGGATAGTCTGAACCGGTATACAGAACGGGACGGAACTGTGGTTTCGTACCGGTGTACCAGTACCGGTTCATCCCAGTTCCGGTCCGGTTCAGATCCGGTTTACTTAATATATATTAATTTTTTTATATTTTATATTGTATATAATTTATATTGTATATTTTATATTTTATGTAATTTATATTTTATATTTTATATAATTTATATTTTATATTTTATATAAATTATATCTTATATTTTATATTTTATATAAATTATGTCTTATATTTTATACTTTATATTTTATATAATTTCTAAATATGAAAATTAATTACCCACCACACCCTCCCCTTCCCTGACACTTGGCAAGCGGCAACTTTATTAAAAGCTGCCCTGCGCCCTAAGCCCCTGACCAGACCACCTGCCCCTGCTGCCCTGCAGCTTTATCAAATTAGACTTTACTTGCAAACTTAATAACAAAAAAAATTTGAAAAATATCTTTAAAATAAACTTAAGTAAAAAATTATAGTATAAATTTAAAAACTATTAATTTAAACTTAGAAAAATAAAAAAAATACATATTTTTGTAATCCCAAAAAATGTCGTCCCGTTTATCCCGTCCGTTCAAATCCAGTCCATTTCGGTTCGTTCCGGTTCTATCTCGGTATATAGTGGAACGGGAGGAACCGATTATTCGTCCCGGTAATTTCGGTCTGGTTCATCCGGTACCGGTCAACGCGTCCCGTTTCGGTCCGGTACCGGTTCGTTCCGGTCCGGTGAATCGGTTCCGGTCCATTGACCAGTCTTAACTTTGATTATGTAAATAGATACATCCAGTACTTTTCTCCAGATTCATCATGTAGCCATGTAAATGACTTTCCTTTTCTTCATTATCTGCTAGTCTACAATGTTCTCTTTTGAAGAAATCTTACCAGATAGCAATTTCTTTAAGGAAGTACTTTAATATTTTTAATAAGATTTAGTTTGAAATGAGTACACATCTTATTTACGAAATATCTCTCACTAGATTTGTGCTTCATTTTCTTTACGTTTGAGTCGCATACAGATCGTTCTGTAAGTTAAAAGATTGCTTTGCATGGCTTTGTAAATTATTTATCTTTGATGGATTTGCAACTTCTTTCATCCTTGTTACTAACATTCTTTCTCATTGTTATGGTATGCATGGTGTGTATGGTCTACTCCTAGGCAGAGAGGTTTAAAGAACTTGTCTACACCTATGTTGCACGAATTTTTTAAAATCTTTGCCACACTTGTGTCGGCACGGCATGGGTGAGAGATTCTTATTGGATTTGGTCAACTTACCTTGGGTAATTTGACCATATTCTATTATTGAGAGTATAGATTGACCATATAAAGTATGAGAATGCTTTTCCATTATGCGTGAAAAGATAAAATATTGGTGTTTGTAAGGAATGGAGTTATTAGTTTTAGTTCAATAACTCAAACTAATCGAAATATATACTTTATATGTTGTAATAAACATTTATTAGCCGCATCCCAACACCCGCATCCACATTTGAATCCATATCCCAACAACAACAATATACCTAGTAAAATCTCACCTCACAGAGTGGGGTCTAGGGAGGCTAAGGTTTATATGGACCTTACTTCCATCTGGTGGAGGTAGAGAGTCTATTTTCGGAAGACCATCATCTCAAGCAAATCAAATCAAAGTAGTAATGAAAAAGAAACATGATAGTGAAGAAAACATGGCAACTTGGATCAGTGCCCATCTTAAAATTTGTGTCATGAAGAATCCGACCTCTAGATCTGCACCCAAATTGGATTTCCGCACTTGAGTTTGATCAACATAGATTATACCAATATATTTCACAAGTGTAATTTTTCAATCATTGTATTTACATCAAGCCAACTGTAACTAATGTGGATTTGAGGCATAGTGATCTTTAGTCTTCCTTTTATGTCATAAGGTTAACTTCCTAGGCGGAATTTGTGTATCATTTGCTTACTAGAAAGCCAAAAACTGTATACTTGTTCATATGACTATGGCTCATGAATTGACAAATTTCATGCTGGCTTCAAGCCTTCACAACCTTCGTCCATTTCGATTTGGGACTGGCAATGTGAGCAATCACTTGGAAGGAAATTCTCTTGAAAGACCTATCTTCTCGTGGGATCAATGCCTCACAATGTAGACTTAGCTAAAGATATGGCAAATGGTAGAAAAGGATTCATATAGGTAATATATACTAGTAGGGAATATGATTTAGTCTTGTTGGAGAACTTCTAATATTATTTTCATTTATTACAATTACTATTATTTATATATATAAAACTTAATTTTCACTTTTATTTTTACTTGGTATGATGATAACATGAGTTGAGCTTAAAGAAATAAGTGAGGATTCAGATAGTCAAATTGAGATTGAGCATAATATTTGTTGTTGTTCCTATGACAACGAAAGAAATAATCCTTATAGATGCAAAATGGTAGGAGTTCTAACTTCTACTTATCCAAAAAAAGAAAATGGAAGAGTTTTAATTTCTTTTCCCTGTTATAATCTACCTAGCCTTTCGCTGAGCAAGCCATTTTTGGATTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAGGTCCCTTTCTTTCTCTTTATTGTCTTTTTTATGATTTACAGCTAATCAATCATTAAACATGTGCTATTCTGTCTCTCTCTGTGTGTGTTAATGCATGTCGGCTCACTGTTCACAAGTTTTCTAATGTTTGATCAGGAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAGGTTGCTATTAATTTCATAAATGATTAAGCCAATGACATGAACGCTGATGAATAATATTTTAGTTTTCTATTTCTTTTCCTGTTTAGGCTTATTATAGTGCTGGAGCTACTCCTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAGGTAGTTGATTTTCTGTTCCTAATTTATTTGTTCTTTTTTTTTTCCGATCACTAGCTATCTCACAACCTCTGAACTCACAGTACTACTTACTCTGATCACCCATCTCATATTTCAGCATCCTCTTATGCC</genome_strand>
        <mrna_strand>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAAAAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCAGTACACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTCGCTGAGCAAGCCATTTTTGGTTTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAG.......................................................................................................................................GAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAG......................................................................................GCTTATTATAGTGCTGGAGCTA---CTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAG...................................................................................................................CATCCTCTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378211" ref_strand="+" ref_description="SGN-E378211 [TUS-39-E7]">
      <seq>gcaccttagtcttcactccatctatataatttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaagttttgggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37841" stop="38966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38141" g_stop="38342" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38666" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="394" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E378211" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38141" e_stop="38342"/>
          <exon e_start="38473" e_stop="38666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTTAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCT</genome_strand>
        <mrna_strand>GCACCTTAGTCTTCACTCCATCTATATAATTTTT--TTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAGTTTTGGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249051" ref_strand="+" ref_description="SGN-E249051 [cLEF-49-K20]">
      <seq>accttactcttcactccatctatataattgggttccctgcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37843" stop="39070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38143" g_stop="38342" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38770" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="496" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E249051" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38143" e_stop="38342"/>
          <exon e_start="38473" e_stop="38770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGT</genome_strand>
        <mrna_strand>ACCTTACTCTTCACTCCATCTATATAA--TTGGGTTCCCTGCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378101" ref_strand="+" ref_description="SGN-E378101 [TUS-21-F4]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="40209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38795" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="519" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39768" g_stop="39909" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="661" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E378101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38795"/>
          <exon e_start="39768" e_stop="39909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAAT</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233299" ref_strand="+" ref_description="SGN-E233299 [cLED-6-L24]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="40140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38795" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="519" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39768" g_stop="39840" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="592" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E233299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38795"/>
          <exon e_start="39768" e_stop="39840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240707" ref_strand="+" ref_description="SGN-E240707 [cLED-21-L8]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtggtgaagttgaaagaacaattgaatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="40099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38795" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="519" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39768" g_stop="39799" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="551" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E240707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38795"/>
          <exon e_start="39768" e_stop="39799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATC</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAGTTGAAAGAACAATTGAATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241807" ref_strand="+" ref_description="SGN-E241807 [cLED-27-E5]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="40086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38795" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="519" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39768" g_stop="39786" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="538" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E241807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38795"/>
          <exon e_start="39768" e_stop="39786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAAC</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242780" ref_strand="+" ref_description="SGN-E242780 [cLED-31-B21]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="39093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38793" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="517" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E242780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238267" ref_strand="+" ref_description="SGN-E238267 [cLED-22-H8]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagttcgtctggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="39092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38792" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="515" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E238267" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACT</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGT-TCGTCTGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236525" ref_strand="+" ref_description="SGN-E236525 [cLED-13-K1]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagtttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="39066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38766" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="491" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E236525" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAG-TTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238122" ref_strand="+" ref_description="SGN-E238122 [cLED-22-O20]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactatagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaagagggctcgttggaagagcaagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="39022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38722" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="446" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E238122" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCT</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTATAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAAGAGGGCTCGTTGGAAGAGCAAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231699" ref_strand="+" ref_description="SGN-E231699 [cLED-4-D15]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="38961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38661" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="385" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E231699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237582" ref_strand="+" ref_description="SGN-E237582 [cLED-19-J18]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="38961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38661" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="385" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E237582" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240547" ref_strand="+" ref_description="SGN-E240547 [cLED-21-A22]">
      <seq>tagttttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactatagtcagagagaaaggacaagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="38943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38643" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="367" r_length="171" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E240547" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAG</genome_strand>
        <mrna_strand>TAGTTTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTATAGTCAGAGAGAAAGGACAAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367958" ref_strand="+" ref_description="SGN-E367958 [TUS-22-J21]">
      <seq>tagtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaaaggagtgggaatgatcaaatgatgatgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37847" stop="38851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38147" g_stop="38342" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38551" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="275" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E367958" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38147" e_stop="38342"/>
          <exon e_start="38473" e_stop="38551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAG</genome_strand>
        <mrna_strand>TAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAAGGAGTGGGAATGATCAAATGATGATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243763" ref_strand="+" ref_description="SGN-E243763 [cLED-35-B23]">
      <seq>agtcttcactccatctatataatttttttttcccttcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattatgagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggaaggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37848" stop="39091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38148" g_stop="38342" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38791" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="514" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E243763" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38148" e_stop="38342"/>
          <exon e_start="38473" e_stop="38791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAAC</genome_strand>
        <mrna_strand>AGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTATGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAAGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317600" ref_strand="+" ref_description="SGN-E317600 [cTOB-8-M11]">
      <seq>agtcttcactccatctatataatttttttttccctgcaaaataaataaataaaagtcttctccatttcacttttacaccacaaaaaataaataaaaatataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaggaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagtgaatttacttgagcaaagttttggggacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37848" stop="38909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38148" g_stop="38342" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38609" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="332" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E317600" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38148" e_stop="38342"/>
          <exon e_start="38473" e_stop="38609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAG</genome_strand>
        <mrna_strand>AGTCTTCACTCCATCTATATAATTTTTTTTTCCCTGCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAGGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTGAATTTACTTGAGCAAAGTTTTGGGGACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241232" ref_strand="+" ref_description="SGN-E241232 [cLED-26-C18]">
      <seq>atataaacaccatgaaccatcaggttatagaagatgataatatggtacttatttcccagtactatcctgatatttacacccaacttgtaccacaacaaggagagtcaaagccgcggagaagacgtaagaagaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="37944" stop="40114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38244" g_stop="38342" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38473" g_stop="38795" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="422" r_length="323" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39768" g_stop="39814" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="469" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E241232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38244" e_stop="38342"/>
          <exon e_start="38473" e_stop="38795"/>
          <exon e_start="39768" e_stop="39814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAGGTTAGTACTATAATTTACCATAACTCTTTGTCTTTTCTAGCTTCAAAATTTACTGGTCTGACTAATTATTCATATTTAGTAGATTTATGTAGACATTGAGATCTCTGACTAAGGGTGTAATAACATGCAGGAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACA</genome_strand>
        <mrna_strand>ATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG..................................................................................................................................GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377009" ref_strand="+" ref_description="SGN-E377009 [TUS-20-G13](-)">
      <seq>aagaacaaattagaagaagggagtgggaatgatcaaatgatgatgatgagaaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaatttggaatggatggattggacaatgtgttttatgcacaagagaataattatgttcaaggattagattgggtgaacttatatatttgatataaataattataaacatcatcatgtgattaatttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38202" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38502" g_stop="38795" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="40043" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="570" r_length="276" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E377009" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38502" e_stop="38795"/>
          <exon e_start="39768" e_stop="40043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGA</genome_strand>
        <mrna_strand>AAGAACAAATTAGAAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGAAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367957" ref_strand="+" ref_description="SGN-E367957 [TUS-22-J21](-)">
      <seq>gaacaaattaggagaagggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaatttggaatggatggattggacaatgtgttttatgcacaagagaataattatgttcaaggattagattgggtgaacttatatatttgatataaataattataaacatcatcatgtgattaatttataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38204" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38504" g_stop="38795" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="40043" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="568" r_length="276" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E367957" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38504" e_stop="38795"/>
          <exon e_start="39768" e_stop="40043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGA</genome_strand>
        <mrna_strand>GAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242816" ref_strand="+" ref_description="SGN-E242816 [cLED-31-P1]">
      <seq>agggagtgggaatgatcaattgatgatgatgaggaagaggaagttgagtgaacaacaagttaatttacttgatcaaagttttggggacgagcacaaactaaagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttacaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacgaaggctattattagaacgatgtgatggggtatcgagttattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaatttggaatggatggattggacaatgcgttttatgcacaagagaataattatgttcaaggattagattgggtgaacttatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38219" stop="40291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38519" g_stop="38795" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="39991" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="501" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E242816" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38519" e_stop="38795"/>
          <exon e_start="39768" e_stop="39991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATAT</genome_strand>
        <mrna_strand>AGGGAGTGGGAATGATCAATTGATGATGATGAGGAAGAGGAAGTTGAGTGAACAACAAGTTAATTTACTTGATCAAAGTTTTGGGGACGAGCACAAACTAAAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTACAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACGAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTTATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGCGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240527" ref_strand="+" ref_description="SGN-E240527 [cLED-21-E15]">
      <seq>agggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaaattggaatggatggattggacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38219" stop="40232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38519" g_stop="38795" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="39932" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="442" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E240527" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38519" e_stop="38795"/>
          <exon e_start="39768" e_stop="39932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAAT</genome_strand>
        <mrna_strand>AGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAAATTGGAATGGATGGATTGGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238114" ref_strand="+" ref_description="SGN-E238114 [cLED-22-M4]">
      <seq>agggagtgggaatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcttctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagattcaaaggctattattagaacgatgtgatggggtatcgagttattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38219" stop="40209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38519" g_stop="38795" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="39909" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="419" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E238114" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38519" e_stop="38795"/>
          <exon e_start="39768" e_stop="39909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAAT</genome_strand>
        <mrna_strand>AGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCTTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATTCAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTTATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423698" ref_strand="-" ref_description="SGN-E423698 [STM-42-M24]">
      <seq>ggagtgggagtgatcagatgatgatgatgaggaagaggaagttgagtgaagaacaagttattttcttgagcaaagttttgaggacgagcacaaacttgagtcagagagaaaggacaagctagccgcggagctagggctcgaccctagacaagttgcggtgtggttccagaacaggagggctcgttggaagagcaagaagctagaggaggaatattccaagttgaaatctcaacatgacaacaatgttgttgagaagtgtcgtcttgaaactgaggtattgaagttgaaggaacaattgaatgaatcagagaaggagataaaaaggctattattagagcgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaatttggaatggaggcattggataatgtgttctatgcacaagagaataattatgttcaaggattagattgggtgaacctatatatttgatataattataaaattatcatgtgattaatttctaattttaggatcccataattctatttgtagataagtaaccccactatatataacgtactaatgtatgtaaatatatctttttttccttgcttttttctagactagtgtggtaattagggttactagtatttgactatctagctagcaagtagcaagatggaaaataacttggatttttctttaaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38221" stop="40520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38521" g_stop="38795" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="40220" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="721" r_length="447" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E423698" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423698" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38521" e_stop="38795"/>
          <exon e_start="39768" e_stop="40220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGATCCCATAATTCTATTTGTAGATAAGTAACCCCAC--TATATAACGTACTAAATTATGTAAATATATCTTTTTTTTTCCTTGCTTTTTTTCTAGACTAGTGTGGTAATTAGAGTTACTAGTATTTGACTAGCTAGCTAGCAAGTTGCAAGATGGAATATAACTTGGATTTTTATTTTAAA</genome_strand>
        <mrna_strand>GGAGTGGGAGTGATCAGATGATGATGATGAGGAAGAGGAAGTTGAGTGAAGAACAAGTT-ATTTTCTTGAGCAAAGTTTTGAGGACGAGCACAAACTTGAGTCAGAGAGAAAGGACAAGCTAGCCGCGGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAGAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCCAAGTTGAAATCTCAACATGACAACAATGTTGTTGAGAAGTGTCGTCTTGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGAAGTTGAAGGAACAATTGAATGAATCAGAGAAGGAGATAAAAAGGCTATTATTAGAGCGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGAGGCATTGGATAATGTGTTCTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACCTATATATTTG--AT--ATAATTATAAA-ATTATCATGTGATTAATTTCTAATTTTAGGATCCCATAATTCTATTTGTAGATAAGTAACCCCACTATATATAACGTACTAATGTATGTAAATATATC--TTTTTTTCCTTGC-TTTTTTCTAGACTAGTGTGGTAATTAGGGTTACTAGTATTTGACTATCTAGCTAGCAAGTAGCAAGATGGAAAATAACTTGGATTTTTCTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255941" ref_strand="-" ref_description="SGN-E255941 [cLEG-35-I11]">
      <seq>aatgatcaaatgatgatgatgaggaagaggaagttaagtgaagaacaagttaatttacttgagcaaagttttggggacgagcacaaactagagtcagagagaaaggacaagctagccgctgagctagggctcgaccctagacaagttgcggtgtggttccaaaacaggagggctcgttggaagagcaagaagctagaggaggaatattcaaagttgaaatctgaacatgacaataatgttgttgagaagtgtcgtctggaaactgaggtgttgaagttgaaagaacaattgaatgaatcagagaaggagatacaaaggctattattagaacgatgtgatggggtatcgagtaattacacaagtccaagtgcttcatctttctcaatggaagcaccatttctaggggaatttggaatggatggattggacaatgtgttttatgcacaagagaataattatgttcaaggattagattgggtgaacttatatatttgatataaataattataaacatcatcatgtgattaatttctaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38229" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38529" g_stop="38795" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="40034" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="534" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="552"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E255941" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255941" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38529" e_stop="38795"/>
          <exon e_start="39768" e_stop="40034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTA</genome_strand>
        <mrna_strand>AATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378100" ref_strand="+" ref_description="SGN-E378100 [TUS-21-F4](-)">
      <seq>gggctcgttggaagagcaagaagctaaaggaggaatattcaaagttgaaatctgaacatgccaataatgttgttgaaaagtgtcgtctggaaactgaggtgttgaagttgaaagacccattgaatgaatcaaaaaaggaaatacaaaggctattattaaaacgatgtgatgggggatcgagtaattacccaagtcccagggcttcatctttctcaatggaagccccctttttaggggaatttggaatggatggattggccaatgtgttttatgcccaaaagaataattatgttcaaggattagattgggtgaacttatatatttgatataaataattataaacctcctcctgtgattaatttttaattttaggatcccctaattctatttgtaaataagtaacccccccatataacgtactaaattatgtaaaaatatctttttttttccctgctttttttctagactagtgtggtaattaaagttactagtatttgactagctagctacccagttgcaaaatggaatataacttggattttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="38398" stop="96905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38698" g_stop="38795" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39768" g_stop="40210" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="541" r_length="443" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40211" i_stop="43513" i_length="3303">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43514" g_stop="43560" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="588" r_length="47" r_score="0.787"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E378100" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38698" e_stop="38795"/>
          <exon e_start="39768" e_stop="40210"/>
          <exon e_start="43514" e_stop="43560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAGGTTCGTTTTCTATCTACTTTTTTCGTTTCATATTACTTAACCTCGATTCTCCTGATTTAATAAAATGAACAAGTTAGAAAATACTTTGGTTTAACGAGGCAGTAGTTAGTGGTAGGGTAATTTTGGGGATTTGTCAGTGAAAACTGGCAGCATAAACGACGTTTGAAGTGGTCCTAACTCTTAAAAATATTTTCAAGATGAGTTGTTTAATTAAAAGGGGAAAGCAAGAATAGAATTTGTAATTATGAAATTTTAAAGCCTTAAATTCTAATGTACAGGTTGATAAATAAAAAAATGACCAAATTATATATTTAATCACGCTGTAAAACTTTTGCTTCTACATATATGACCTTATTTGTGAGGATATTTTAATACTACCAGTAAAAATAACCAAACTATATATCCTGCTAATTCACACCTGGTTAAACTATATTGAAAATGTTAAAAATATTTATACTAATTATCGAAGTTAAGAAGATATACATCAGCTTTAAACTAGAAATAATCGTCATATTTAGACATGCAATATGAACCCTAGACAGCTCGATAATGGATCTAAGTGAACAAACAGATTGGGATTACTAAGGTAAAACATAATGTTTCGCACTTGTATTTATTCTTGTTAAGTAATTTTATTTTAATAAAAAATCTGTAGACGCTCTATCTATCTAAAAAGCGTAAAAAGATAAAAATAATCGTAATAATAATAGTGTCACCCTTATAGGCAGCAAAGGGAACTACACCCTCCACTTAACAAACCTCCGTACGCTCTTGTCGTTTTTTTTTTTAGATGTCCAAGTTAATCCCCTCGTACCTTTTTGGTGGGTGGTGGCATCACATGCCTTTCTTTCTCACGTGCTTCTTCCACATTTTTGTATCGAATATCATACTTATCATCGATACATAAATATTTATATAGTCAATTTTAATTTATTTGAAATTAAAATGCGTATATTATTTTTTTTTTTATAGGTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGATCCCATAATTCTATTTGTAGATAAGTAACCCCACTATATAACGTACTAAATTATGTAAATATATCTTTTTTTTTCCTTGCTTTTTTTCTAGACTAGTGTGGTAATTAGAGTTACTAGTATTTGACTAGCTAGCTAGCAAGTTGCAAGATGGAATATAACTTGGATTTTTATTTTAAAGTGTTTGATTATTACTTATCGTTGTGTCTGTTGTGTCTGACGTATTATAATCACCCTCTTAATTAATATCTTCAAGTACCCCCCTACCCCTCCCCCCAACCCTCAATTGTTTTTTGTTGGGGGGTTTGCATCAAATTATTCGGACAAAACTCAACCAAAAAACAAAAAATCAAAGTTAAAACATTGAAATTATGTTGAAGATATAATTATTAGGTAAATGATTGTGAGTATTTAAATTCTTAGATGAGAGTACGTTTACATAATTCAACACAATCTACAAGTAGTCTAATTTTTATTTTTTCTTTAGTTTCACTTAATATTTAAATTGAAATCTCGATTAAATTTAAATGCCACAATAAAAACCATTTTGATTGAGGATGGGGATACGAGAAAGTCATTAAATAAATAAGTGTTGGGGTAATAACTAATAACTGGCTTCAAATAAAAAGTTACACAAGAGAAATAATATACCCGCTAATATGAAAGTTACGTTATATATATTTTTTCACCCAAAAAAGTACATTATACACTACACCATTTTTTACGAAAGAAATGATAGCACCCGTATACTCAGGATACGTTTTCACTTAGTTTTGAAATTAGTATTTGGTTAAATAATTTAATATAAAGTACTCTATTTTCTCCTTTTAAAAAATTATAATTAAATACAAGTACTCCACCTTGATACAGTGGTGTGGTCACACTTCTTCGTCAGAATATTATATACGAGTAAAATGATAAATTAAGTGGTTAAATAATATATGTTGGACATCATTGACACAATAATATGATATAGCCTAATAATTTCAGGCGCATGAAAGAGTAAAAATACGCAAATTTAAATTCTTTGTGTGTCAATTTTACTAGTAGCAACTCTCTTTGTAAGAAGAGCAAATTCACTTTAACACTTGAACACTCTTTATGAAAATTTTAATTCTGCCACTACTTTTATATATTCTAATTAAAAATAAAAATATTTAATATTTATGGCCAAACTTCTGACATAAATGTGTTTGGCAAAAGAAAGAAATTTAAAAATTCAAATAATAGAGAGCAAAATATACATCTTAAAATACTAATCAAAATTTTTATTATTTAACTCTAAAAATAAAAATCATGACAAATAACACCTAACACGAAATGAGTACTAAAAAGAGAAATTAGTTAGGTGCATAAGTAAAATATTTCGCTCACGTGGGAACATTGGGAATTGAATTCTAGCTACTTATGTGCCTAATCATTATTATCCGCTTTTACCAGCTGGCGCTCCAAATGATATTTATAGATAATTTCTTTCTTTTTTTAAAAAATAACCTATAAGATTTGCATTCCTAAATAAAAATAAAAGAAGTAATTATCTACTTAAATAATTTTAAGTACAAAACACTTTCCATGAACAAAACAACAGATGCTGCTGCCATAGTATTGGTTTTGTTTGTCCAAAATCAAAATTTGTACTACCTGCATGCATGTGACCAAATATTCAACTAATATGATTCGATTCCCACTTGTTCCCATCTTTTTCCATAATACTTCCACCCCTTTATACGAATTTGGTCAAACTTAATCTAGTACAAATTATAGAATGATATTTATTTATATAAAAAAAAAATTATATTTATGTTTAAAACATTTTAATTATACATAAATTTTAGTATGAAATTCAGAACTCACAATTAGATGCAGTGGCGTAGCCACATGGTGGTTAGGATATTCATGAACTGAAATAATGTAGTGCTCGTGTGTTTGATCTCAATAGTTCTTACTTTTTGTAAAGGAGCTTTCATGTGTGGAACCATTGGCCAGATGATGCACGTTTATAATTTAATCCAGTGCAATTGGTGTATATAGTCTAAATTCAGTTGATCATTATACATTTATAGGTATAGTCTAAATACTATTTTGGAGGTGGAGATTGAAGTTTTCCTTTTCTGAAAGAAGCATTGTAGTATTAGTGATATATAGTAGGTTGTTCGTTATATATGGAGACGTGTAAAATGAATTAACTATATCTTCTTTTTCTTTTTCTTTTGCTTTTTTTGTCACAACACTTTAATTTTAAGGTTTTATTTTTTCCCTTAATAATATATAGTGTTGTTATATCTTAAACTCTTATTAACGTCATAACAATTCTATAATTATTAATTGGTGTTATCTTAAGCAAGAATAGTTAAACAATTGGAGTAAGGATAGTTTTCCAAGGATTAAACCACACGTAAATATGGTAAGAAAGGATAAGCATAAAGCACAACGAGAGATAAAAGAGGTTTTATGTGTTGGTGTTTCCTTCTAGTTTATTGAGTACTAATTCGTTTAAAGGATACTCGTCGTTGGTTCATTTTTATTTGTACACTTAAATAAAAATATATATTGAATTTATTTATTATCTTAAAATAGCAAGAAAAATAATATTTTTTCTTTATAGCTTCGTCAATGTGTAGAAATAAACTTTTGATAAAATAAGTAAAAAAAATTCAACATGGTGGTGGGATGATTCCTTTAATTATGAGTCTTTTAATATAATTAATAATTTGGGCCATGTTTTTTTCCGACAAGTGTAGCTCATGTTTCTCATTTTTCGACTTGTTATTATGATGTTAATTAAGCACCAACTAATTACTGATTGGATTTAAACACTTTAGTTCTCGACTAATCTAAATCATCCCCTTAATTTTGCTCATAATTTAATAATGGCATTTGCCTTGAAATATTTCCATTATCTTAACTAGCTATGCTAACTTTTTATTACCCTTATTGTCTGACTTTTTAAAAGATGCAGTAGTGGCCCTAAATAATTTAAATATATATAAAATTAACTCTTTAATTAATTTGTACAATTTCACGTATATTGTCTAATCCTATTGACGAATAAGAATAAGAGTTCGGAGCTTAAAGGTTGAAAAATATTAATAAAAATTTTAAAACGGTATATGAATTCTTTTTTTAATCAAATGACAAAATCGCTCACGAAGTAGCAATTTTATCCGCCGAAAAAAGCAAAACTGCTGCTATAGCAGCGATTTGTTAATTTTTATTTTTTTAAAAAACATTATACAAAATCGCGGAACGATTTTCAAAATAAATTTCTTTTTTATAACTCTTTTTAGTATGTCGCTGCTTATGCAGCGACTTAAGTTTAAATATTATTTTTTAATTTTTTGCTTCGTTTTTTAAAAAAAGTTTAAATCAAAAAAGATTTTTTTAAAAAAAATCAAAGTGATTTTTAATTAAAAATCTCTGTCTTAGCAGTTATTTGATTTTAAAAAAACAAAAGAAATTGTTTTTATTTATACTTTTTTATTAAAAAAAAGAAGCAAATAAAAAAAAATTAAACATAAGA</genome_strand>
        <mrna_strand>GGGCTCGTTGGAAGAGCAAGAAGCTAAAGGAGGAATATTCAAAGTTGAAATCTGAACATGCCAATAATGTTGTTGAAAAGTGTCGTCTGGAAACTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGAAGTTGAAAGACCCATTGAATGAATCAAAAAAGGAAATACAAAGGCTATTATTAAAACGATGTGATGGGGGATCGAGTAATTACCCAAGTCCCAGGGCTTCATCTTTCTCAATGGAAGCCCCCTTTTTAGGGGAATTTGGAATGGATGGATTGGCCAATGTGTTTTATGCCCAAAAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACCTCCTCCTGTGATTAATTTTTAATTTTAGGATCCCCTAATTCTATTTGTAAATAAGTAACCCCCCCATATAACGTACTAAATTATGTAAAAATATCTTTTTTTTTCCCTGCTTTTTTTCTAGACTAGTGTGGTAATTAAAGTTACTAGTATTTGACTAGCTAGCTACCCAGTTGCAAAATGGAATATAACTTGGATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744718" ref_strand="+" ref_description="SGN-E744718 [GI|15384988]">
      <seq>gggccatggccatggactagagatgaaaaccacacgtcaaactccaatctctaatcgaaagagacgatggcggatacactcgctgctcttaggtctttaatgtcctctcactctccttctcttcatgctctgattattccttccgaagattatcatcagagcgaatatgtatcggcacgggacaaaagacgcgcatttgtttctggattcaccggaagtgctggtttggcgcttataaccatggatgaagcacttttatggaccgatggcaggtatttcttacaagcagctcagcagctcagtgaccagtggaagctcatgcgtatgggagaagatcctcccgttgatatctggatggccaataatctaccaaaggatgcggccattggtgtggatacgtggtgtgtatcagtagatactgcacagaaatgggagtgtgcttttgctaagaaacaacaaaagttggtacaaacaactagaaacttggttgatgatgtttggaaaaatcggctacctgcccaagcaaatcctgtaattgtgcatccgttgcaatttgctggtcagtctgttgcagagaagttgaaagaattgaggaaaaagcttgtaatggggaaagcttgtgctattattataacagcgcttgatgaagttgcatggttatataatgtccgtggcagtgacgtatcatattgcccagttgttcatgcatttgcgattgtgactatagattcagccttcttctacgtggataagcaaaaattgtctcctgaggcaaactcttacatggaagaaaatggaattatggtgcgggattatggtgatgttagctcagatgtggtcctccttgcatctgatcaactcacttcttgctcctcaactaaggggtctaaagggaacccaaagattgatgttagaaatgccacttatgtaggaaatagtgatagtcatgctgctgagtttgtaaatgacctcatttgggttgatcctggagcatgttgcttcgctttgtattctaaattgagtgctgataaagttctccttcagcaatcacctttggcccttgcaaaagctctgaagaaccctgttgagatagaaggattaaagaaggcccattttcgggatggggcagctgttgtgcaatatcttgtctggcttgataagcagatgcaggaaatatatggagcatctggttatttcatggaggctgagagtaccaaacagaagaaacaactggggactaaaagactgacagaagtctctgtgagtgataagctggaggagttccgtgcatcaaaggagcattttagaggattaagtttccgaactacctcttctgttggctcaaatgcagccattatccactataaacctgaggcagaaacatgtgctgaactcgatccagattgtatttacctattcgattctggagcacagtatctggatggaacaactgatattacacggactattcatttcggaaaaccttctccacatgagaaatctagttacacggcggttcttaaaggacatatatctttgggaaacgccaggtttcctaacggaaccaatgggcaagctcttgacattcttgctcgaattcctttgtggaaagatggtcttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaaggagggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccagaggaaactaattgacgtgagccttctgattcctgaagagattgaatggttaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtagttaaatcataaagatgcgacaagtctatgctgcgtttcgacggagttaataccgtaactcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="47583" stop="56337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47883" g_stop="48041" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48042" i_stop="48118" i_length="77">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48119" g_stop="48182" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="223" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48183" i_stop="48274" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48275" g_stop="48414" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="363" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48415" i_stop="49552" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.770" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49553" g_stop="49837" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="648" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49838" i_stop="49938" i_length="101">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49939" g_stop="50061" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="771" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50062" i_stop="50160" i_length="99">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50161" g_stop="50466" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="1077" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50467" i_stop="51722" i_length="1256">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51723" g_stop="51809" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1078" r_stop="1164" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51810" i_stop="52253" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52254" g_stop="52321" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1165" r_stop="1232" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52322" i_stop="52775" i_length="454">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52776" g_stop="52842" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1233" r_stop="1299" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="52843" i_stop="53461" i_length="619">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53462" g_stop="53596" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1300" r_stop="1434" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53597" i_stop="53693" i_length="97">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="53694" g_stop="53774" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1435" r_stop="1515" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="53775" i_stop="54444" i_length="670">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="54445" g_stop="54499" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1516" r_stop="1570" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="54500" i_stop="54693" i_length="194">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.248" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="54694" g_stop="54798" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1571" r_stop="1675" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1676" r_stop="1747" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1748" r_stop="1872" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="55730" g_stop="56036" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1873" r_stop="2179" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2180" polyA_stop="2198"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E744718" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2179</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47883" e_stop="48041"/>
          <exon e_start="48119" e_stop="48182"/>
          <exon e_start="48275" e_stop="48414"/>
          <exon e_start="49553" e_stop="49837"/>
          <exon e_start="49939" e_stop="50061"/>
          <exon e_start="50161" e_stop="50466"/>
          <exon e_start="51723" e_stop="51809"/>
          <exon e_start="52254" e_stop="52321"/>
          <exon e_start="52776" e_stop="52842"/>
          <exon e_start="53462" e_stop="53596"/>
          <exon e_start="53694" e_stop="53774"/>
          <exon e_start="54445" e_stop="54499"/>
          <exon e_start="54694" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCATGGCCATGGACTAGAGATGAAAACCACAAGTCAAACTCCAATCTCTAATCGAAAGAGACGATGGCGGATACACTCGCTGCTCTTAGGTCTTTAATGTCCTCTCACTCTCCTTCTCTTCATGCTCTGATTATTCCTTCCGAAGATTATCATCAGGTTCCTTCACTCTTTCTCCAATTTTTTGTGATTTCATCGAACTTGCCTTTCAATTGCGTTATTGGATGATATGACAGAGCGAATATGTATCGGCACGGGACAAAAGACGCGCATTTGTTTCTGGATTCACCGGAAGTGCTGGTTTGTTTTTGCTTTTTCTCAATCACTTCACTCCGTGTTGATTTAATTGTTTTCGTTTGTGGAATATCAGCTGAAAAATTAATTCGTCCTAGGTTTGGCGCTTATAACCATGGATGAAGCACTTTTATGGACCGATGGCAGGTATTTCTTACAAGCAGCTCAGCAGCTCAGTGACCAGTGGAAGCTCATGCGTATGGGAGAAGATCCTCCCGTTGATATCTGGATGGCCAATGTGACTATTCCTCTCTTTGTTCTAGTATATTCCATTTGTGCTTATTCTATATTTATGTAAATCATAAGCTGTGCGAAACTAACATATTCTATACTTTTTTGCCCTGTCTTGCTTGTTGCTTAGTTTGCATCAGAACTGCTATTGTATAGACTCATCGACTCCTACTTGGTTGGTTGTAGACTTGTAGTGATTAGTAAATCAATATAAGTAAGTATTGGACAGAAGTTCTACAGAGTTCCTACAGTACTTATATTTATTATATGTATATCAGCTGTGATGTATATGGAAAAAAGAAAAATGTTAAATAAATAATTGAACTTCCAAGTATTGTGTGTACAGTTGTGTAATTATCTTTAATGTACTTGAATAGAAAATGTCTTTTGATCTTATTGTTGATATATTAATCTTCTTGAAGGTTCTGTTATCGTCAACATGTGCATTAAAACTTCCATATAGAAGTGATCATTCCATCATTCTCCTTTTGGAAATTGGAATGACATCCCTTCAGTTCATTCATGTTGTATCCTTCACTTTTCTTGCCATAATACAACCTTCCTGTCTTAAAATAATCTGAGATCATCTCACCAATTCAATTTTAAAACTGTGACTCTGTGAGTGCATTGAAGTCGAAATCTCAATCTTTTATTGTGGACTGTTCATTATGTTTCCAGAGCAAGAATTCATACGGAATCGGCAAAGGTCTTTGAGTTCATTTTGTTTATCAGTTGTCATGCATCATATTTTCAGCTTGAATCTCTTATATTTGTTAGATCTTTATTTTCTACAGTGTCACTCTCGCTTCTCTTTAGTTATTTCAGTAGATGTATAGTTTGTCTTATAACTTTGGCAGCAATAACCGAATGATAATATAGGAATTTAGTATGTCAAATTGAATTTAATTGAAGATAATATTATTGCCTGATCTATTGTATTTTGTCTGCACCCCTACTGACATATGATGTATCATTTCAACAATTACTCTTTCATTTCCAAGTTTTTTCTTCTAGTCACTGTATCCTATACAACAAGGTGCTGTAATTATTTTAATCTGGAATTGCAAGCTAGAGGAGTGTGAACTTTGTGACCCTGCCTGAAGTTCAGCTGGTATGCTAATTTATTTTATAATGTGCTTTACTAGAATCTACCAAAGGATGCGGCCATTGGTGTGGATACGTGGTGTGTATCAGTAGATACTGCACAGAAATGGGAGTGTGCTTTTGCTAAGAAACAACAAAAGTTGGTACAAACAACTAGAAACTTGGTTGATGATGTTTGGAAAAATCGGCTACCTGCCCAAGCAAATCCTGTAATTGTGCATCCGTTGCAATTTGCTGGTCAGTCTGTTGCAGAGAAGTTGAAAGAATTGAGGAAAAAGCTTGTAATGGGGAAAGCTTGTGCTATTATTATAACAGCGCTTGATGAAGTAAATGTGTAACCATAGACCCAAATGCTTTCCATCTTATAGCTTTGGCTAATCTCGTCTTGGATATTCTTCATTTCTCCAATATTATTGCCAATGTACAGGTTGCATGGTTATATAATGTCCGTGGCAGTGACGTATCATATTGCCCAGTTGTTCATGCATTTGCGATTGTGACTATAGATTCAGCCTTCTTCTACGTGGATAAGCAAAAATTGTCTCCTGAGGTTGCATCCAAATGGCATAATCTTTTCATTTTAAACTGAAAACAATTGCATTTTGTTATGTTTTTTATACTATTAAATAAGCATGTATATACCATGCAGGCAAACTCTTACATGGAAGAAAATGGAATTATGGTGCGGGATTATGGTGATGTTAGCTCAGATGTGGTCCTCCTTGCATCTGATCAACTCACTTCTTGCTCCTCAACTAAGGGGTCTAAAGGGAACCCAAAGATTGATGTTAGAAATGCCACTTATGTAGGAAATAGTGATAGTCATGCTGCTGAGTTTGTAAATGACCTCATTTGGGTTGATCCTGGAGCATGTTGCTTCGCTTTGTATTCTAAATTGAGTGCTGATAAAGTTCTCCTTCAGCAATCACCTTTGGCCCTTGCAAAAGCTCTGAAGGTGAATAATACTACCACAAAACTTACTTATCCCCTAAAGTTTGTTGTCTGAGCATTTTATGTGGTTGAAAGTCTAGTAGGTCTTTAGACCGCCTTTGTTTGGTTGGATTGGGGTCAAGTCAATCAATTGTTCCATCAGAAGAAAAATAATAGCAAAGAATTACATGAAGACAATTGATGGCCCAAGCTTGATCAGCATTTGTTGTTCCATTAGTATGCATTACCTCTATATGCTTTTCAATATTTTGAACTGAATCTATCTTAGGACCCTTGGATGTTTAGGATTGTTAATCTCATCAGTCCCGTCTGCGACCCTTAAGAATTCAAATTCAGCTTTCTCCGGATTATTTCTAATTTCCTGTTGTATTTTTAGTGAAAATACTAATCATCATGTTTATATTGTCTTGATGTATAATATGGACCTGCTGATTCCTCCCCCTCCTTACCTCCTCTAAGAGTTCCTGAGTGAAATGACAAATCAGTGATCGTATTTTGATAAGAGAAAGTATTCATTTTGTCAGTGTTTGAGATGTAATTCAGCTCTGATTTTGTTGCATTTGTTTGACCAAAGCTTGTATATCAGTTCTATTTTCCTTGTCAGTTATTGTTATATTTGTCTAATTGGTGTTAAACTATTTTCTTTTTGAAAAATGAAAATTCTGGTGTGAGCTTACAGTCATTCTTATCCGACTAATTTGACACCTTTAACTAATATATTTTTGCTAACCACCAACTTCTGCTGTGTCTTTCATCAATACAATTACTTTCTTCCAATTCCATGTTTCCTCCCAGCTATAGTTATTACTAAAGTTATCAGACTGTCTTAACACTATGTTGCTCGGACTCTTCAAAAATGTCTATAGGTGTGTGTTGGATATTTCAAAAGTAGTGCATTGGAGAATCTGACACGGGAGCAGCAACATATTGGAGAGTCTGAGGAACATAGGTCTAATGTACTAGTTTCTTCATGTTTATGTGATTAAACCAAATCAGTCTTTGTCTTCTTCTGTCTTTTCCGCGTCTGCTATGATCTGTTCACTCCCATATTTTTTCTTTCACTTAATTTCTTTCTTGTTGGTATAAAAAAAGTGAGTGTTGTACTAGAACAATTTACTGCGTGGAGATTGTAAGTTTAGTTTATTACACTTGCCATTTCTAAAAAAATTATCTGGCTTTTGAATTATCATCTGTGTTTGTGATCTACTTCTATTCTCAAGCTTACTGTTGATTGCTAAACTACAAAATTATAATTTCTAGAACCCTGTTGAGATAGAAGGATTAAAGAAGGCCCATTTTCGGGATGGGGCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAGGTACGTCAGATTCTTAGAGTCAATCTTCTAGTAATCTTTGTGAGTTACTGCCACCTACTGCATTTGCATCTTCCTTAGATTCTATAAGTATGTAGACATGTGTGTATGTATGTACTTTGTGTGTGCGCGTGCGTCTATGTATATATGTGTGTATGGTTTCTTTTTAATCTTTATACAAGTGACGAGTGCAAGTTGGTATATACCGATAAAACCAAATATGTCGGGTTAGAAATTCTGTCCTATGCAAAACTAGAAGAGTAGAAGGATAATGTATCTCTCAGAAAAAGATGTTATGTCTACTTGCAATGCCTTTTTGCAAATGGTGTGAACTTTATATCTTTAGCAGGGATCTCTTCACTTTTTAGGTGCAGAAACACTTGATTCAAGCTATTCATGGTTTCAGTAGTTTGGCAAGATGAGTTTCAACTTGTTCAAATTTTCCAGATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACTGTAAGTATTTCTGGTTTCTTGTACTTTTTCATGTTTTTGGCGAGTAAGTACATTCTAAGAATTGATCTCTTATAGGATGTTAGTTCAGGACTTTTGTCCCCCCCTCGACAATTCAGGATCCAAGAAAAAAGGAATTAGTCTATTAAAGCTGGCATCTTTTGTTGATAGGAAGATGCATTATCCAAGAAGTGATTTCTTGATTTAGTCTGTGTAGAAGGTTATTCTTGTGGGCTGTGTGGATTTCAAAATTTAAGACTTTGTTTTCTTAAGATAGAGCCAAGACTTTTAGTGGCCCTTGATTTTCTGAAGGAAGCTTCTGCAAGTTACTGATCTTCAGTCAATAATTAAGTGATTATTGAGGAACTTATCATGAAGCATGGGATATATTATATTGTTTTCCTTAGTAGTGGGTCCATGTTTTGTACCTTATTTTTGTAATAATTCACTATGTTAGGGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAGGTAAATGGTTGTATTCTGATGAAAACTCTAGCATGAAATCTGTTGTCTTATACTCTTATCACTCTATTTATGTATGAGTTATCGTCATCTAGGTTGTGAGCTGATGATGACTCTAGAGTTTATTTCCAGTTTGTTGCTTCTGTTTAACTGCTATGTTATTGTTTCCAGAACCACATGATATGCTGATTTCGACTCGAGCTCTTTCCAGTTACACGCTGGCATATTTTCTCTATCTTTATTTTTTAAAATGTACAAGAACAATAATATCATTTTTCTATTGTATCCGCATTGCAAGTGAGTGTAGTGATTTAAAAATAGACAAGTATAAGGGGTGGCAAAAAAAAAAGGAGGTAAAAAGTACGAGTATGTATTATCAAAATGTTAATAACATGTATTGGGATTCAGGAGTACTTAAGATACCTCGGGATAATATGTTTAGTTGCTTCAATTAACTAGAAGTTTTTGCCTTGAGCTCTTCCAACAAGTGCAGCTTGGTTCCTTTTCTGATGGTTGTGATCTTTCTTGAAGTTAGCAAAATCATTAAGAATCTTGTTTTCTCAACAATAGTATCACCATTATCTTAATGTAATGGGGTAATGTTGCTCCTCTACATCTGCAGCATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAGGTATGTGAGAACTGAGAGCATATATTCGGGATTGCTACTTTGCGTACTTCTATATTTAACATGTGATCTTTCTATATATATGATGGTGTTGCTGAAGTATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCGGTATGTGAAAAGTGTTCTGCATTTTTATGATTCCAAACCATGTCGGCTATGCATGATGGAGTGAAATTTCATAATGAGAGTTCTGATTTCAGATTACTATTGCTGATCTTATCTATGTCCGGTCTCCTTCCACACTTGGTCACGCTTCCTTTAGATCATTCTAGAAGCGTTAATCCATTTAAGCCTTGATTAGAGAATCTATTGGAGGCATTATTCTCCTAGAGATCTCTAGTTCTTTTATTCCAGTGCTTCTATCATGTAATCCTTCTTATTCAAGTCTTAACATACATGCATTACACATGCTTTCCTGTGGGAAATTCTCTCTTTGCTATGAATGTTGATTGAAATCCATAAAAATTGTAGAGCAAAAGAAATTGTCTTATGAGTAAACAAAGCAACAGTAAGTCGAAACTTTTCTGTAAATTGCCTTCGTTATTCTTTAGGTTTTCTTTTCTGGTTTATCTTTTTAGGGGTGACTGAGAAAGGATAATGATTGGCTATACTTCGAACAGTTTTTTTTTTTGTATATATATGTATATAGGTTTGTCTTCTATGCTGGTTTTGCTCTGTGTGATTGATTCTTTAGAATCTTATACTGGAAATTTTTGTTCTTTCCGTATCACAATTCAATACTGCATTAATGGCTTAAAGGTTACTTTATTTTATGTAGGTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATGGTATGATTATGTGGAACTTGATACTCGATGTCTGTAATTTTCTGAATTTTCTTCAGTGGTTAGATGTACCAATGCCTATATCCACAGGCTATTATTCAGAGGCATATGCTTACCATTTTCATTTCATTTCATTCAAATGCTGTGGCCCAAGATAGTTGGCTTATCAGAACATTGTGCTTAACTACTCTTGATAGGGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTC</genome_strand>
        <mrna_strand>GGGCCATGGCCATGGACTAGAGATGAAAACCACACGTCAAACTCCAATCTCTAATCGAAAGAGACGATGGCGGATACACTCGCTGCTCTTAGGTCTTTAATGTCCTCTCACTCTCCTTCTCTTCATGCTCTGATTATTCCTTCCGAAGATTATCATCAG.............................................................................AGCGAATATGTATCGGCACGGGACAAAAGACGCGCATTTGTTTCTGGATTCACCGGAAGTGCTG............................................................................................GTTTGGCGCTTATAACCATGGATGAAGCACTTTTATGGACCGATGGCAGGTATTTCTTACAAGCAGCTCAGCAGCTCAGTGACCAGTGGAAGCTCATGCGTATGGGAGAAGATCCTCCCGTTGATATCTGGATGGCCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTACCAAAGGATGCGGCCATTGGTGTGGATACGTGGTGTGTATCAGTAGATACTGCACAGAAATGGGAGTGTGCTTTTGCTAAGAAACAACAAAAGTTGGTACAAACAACTAGAAACTTGGTTGATGATGTTTGGAAAAATCGGCTACCTGCCCAAGCAAATCCTGTAATTGTGCATCCGTTGCAATTTGCTGGTCAGTCTGTTGCAGAGAAGTTGAAAGAATTGAGGAAAAAGCTTGTAATGGGGAAAGCTTGTGCTATTATTATAACAGCGCTTGATGAA.....................................................................................................GTTGCATGGTTATATAATGTCCGTGGCAGTGACGTATCATATTGCCCAGTTGTTCATGCATTTGCGATTGTGACTATAGATTCAGCCTTCTTCTACGTGGATAAGCAAAAATTGTCTCCTGAG...................................................................................................GCAAACTCTTACATGGAAGAAAATGGAATTATGGTGCGGGATTATGGTGATGTTAGCTCAGATGTGGTCCTCCTTGCATCTGATCAACTCACTTCTTGCTCCTCAACTAAGGGGTCTAAAGGGAACCCAAAGATTGATGTTAGAAATGCCACTTATGTAGGAAATAGTGATAGTCATGCTGCTGAGTTTGTAAATGACCTCATTTGGGTTGATCCTGGAGCATGTTGCTTCGCTTTGTATTCTAAATTGAGTGCTGATAAAGTTCTCCTTCAGCAATCACCTTTGGCCCTTGCAAAAGCTCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGTTGAGATAGAAGGATTAAAGAAGGCCCATTTTCGGGATGGGGCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAG.................................................................................................TATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATG..................................................................................................................................................................................................GGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441725" ref_strand="+" ref_description="SGN-E441725 [cSTA-31-A2]">
      <seq>agagaagaaaatcactgcccctctatgcaataagtcaaactccaattgctaatttggaaatcgaaagacacgatggcggacacactcgctgctcttaggtctttaatgtcctctcactctcctcctgttcatgctttgattattccttccgaagattatcatcagagcgaatatgtatcggcacgggacaaaagacgcgcatttgtctctggattcaccggaagtgctggtttggcgcttataaccatggatgaagcacttttgtggaccgatggccggtatttcttacaggcaactcagcagctcagtaaccagtggaagctcatgcgtatgggagaagatcctcccgttgatatctggatggccaataatttaccaaaggatgcagccattggtgttgatacatggtgtgtatcagtagatactgcgcagaaatgggagtgtgcttttgctaagaaacaacaaaagttggtacaaacaactagaaacttggttgatgaagtttggaaaaatcggctacctgcccaagcaaatcctgtaattgtgcatccgttgcaatttgctggtcagtctngtgcagantagttgaaagaattgaggagaaagcttgtactgggaaaagctcatactattattataacagcacttgatgaagttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="47635" stop="50139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47935" g_stop="48041" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="165" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48042" i_stop="48118" i_length="77">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.870" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48119" g_stop="48182" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="229" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48183" i_stop="48274" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48275" g_stop="48414" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="369" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48415" i_stop="49552" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.770" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49553" g_stop="49837" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="654" r_length="285" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49838" i_stop="49938" i_length="101">
            <donor d_prob="0.753" d_score="0.88"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49939" g_stop="49944" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="660" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E441725" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47935" e_stop="48041"/>
          <exon e_start="48119" e_stop="48182"/>
          <exon e_start="48275" e_stop="48414"/>
          <exon e_start="49553" e_stop="49837"/>
          <exon e_start="49939" e_stop="49944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAAAGAGACGATGGCGGATACACTCGCTGCTCTTAGGTCTTTAATGTCCTCTCACTCTCCTTCTCTTCATGCTCTGATTATTCCTTCCGAAGATTATCATCAGGTTCCTTCACTCTTTCTCCAATTTTTTGTGATTTCATCGAACTTGCCTTTCAATTGCGTTATTGGATGATATGACAGAGCGAATATGTATCGGCACGGGACAAAAGACGCGCATTTGTTTCTGGATTCACCGGAAGTGCTGGTTTGTTTTTGCTTTTTCTCAATCACTTCACTCCGTGTTGATTTAATTGTTTTCGTTTGTGGAATATCAGCTGAAAAATTAATTCGTCCTAGGTTTGGCGCTTATAACCATGGATGAAGCACTTTTATGGACCGATGGCAGGTATTTCTTACAAGCAGCTCAGCAGCTCAGTGACCAGTGGAAGCTCATGCGTATGGGAGAAGATCCTCCCGTTGATATCTGGATGGCCAATGTGACTATTCCTCTCTTTGTTCTAGTATATTCCATTTGTGCTTATTCTATATTTATGTAAATCATAAGCTGTGCGAAACTAACATATTCTATACTTTTTTGCCCTGTCTTGCTTGTTGCTTAGTTTGCATCAGAACTGCTATTGTATAGACTCATCGACTCCTACTTGGTTGGTTGTAGACTTGTAGTGATTAGTAAATCAATATAAGTAAGTATTGGACAGAAGTTCTACAGAGTTCCTACAGTACTTATATTTATTATATGTATATCAGCTGTGATGTATATGGAAAAAAGAAAAATGTTAAATAAATAATTGAACTTCCAAGTATTGTGTGTACAGTTGTGTAATTATCTTTAATGTACTTGAATAGAAAATGTCTTTTGATCTTATTGTTGATATATTAATCTTCTTGAAGGTTCTGTTATCGTCAACATGTGCATTAAAACTTCCATATAGAAGTGATCATTCCATCATTCTCCTTTTGGAAATTGGAATGACATCCCTTCAGTTCATTCATGTTGTATCCTTCACTTTTCTTGCCATAATACAACCTTCCTGTCTTAAAATAATCTGAGATCATCTCACCAATTCAATTTTAAAACTGTGACTCTGTGAGTGCATTGAAGTCGAAATCTCAATCTTTTATTGTGGACTGTTCATTATGTTTCCAGAGCAAGAATTCATACGGAATCGGCAAAGGTCTTTGAGTTCATTTTGTTTATCAGTTGTCATGCATCATATTTTCAGCTTGAATCTCTTATATTTGTTAGATCTTTATTTTCTACAGTGTCACTCTCGCTTCTCTTTAGTTATTTCAGTAGATGTATAGTTTGTCTTATAACTTTGGCAGCAATAACCGAATGATAATATAGGAATTTAGTATGTCAAATTGAATTTAATTGAAGATAATATTATTGCCTGATCTATTGTATTTTGTCTGCACCCCTACTGACATATGATGTATCATTTCAACAATTACTCTTTCATTTCCAAGTTTTTTCTTCTAGTCACTGTATCCTATACAACAAGGTGCTGTAATTATTTTAATCTGGAATTGCAAGCTAGAGGAGTGTGAACTTTGTGACCCTGCCTGAAGTTCAGCTGGTATGCTAATTTATTTTATAATGTGCTTTACTAGAATCTACCAAAGGATGCGGCCATTGGTGTGGATACGTGGTGTGTATCAGTAGATACTGCACAGAAATGGGAGTGTGCTTTTGCTAAGAAACAACAAAAGTTGGTACAAACAACTAGAAACTTGGTTGATGATGTTTGGAAAAATCGGCTACCTGCCCAAGCAAATCCTGTAATTGTGCATCCGTTGCAATTTGCTGGTCAGTCTGTTGCAGAGAAGTTGAAAGAATTGAGGAAAAAGCTTGTAATGGGGAAAGCTTGTGCTATTATTATAACAGCGCTTGATGAAGTAAATGTGTAACCATAGACCCAAATGCTTTCCATCTTATAGCTTTGGCTAATCTCGTCTTGGATATTCTTCATTTCTCCAATATTATTGCCAATGTACAGGTTGCA</genome_strand>
        <mrna_strand>AATCGAAAGACACGATGGCGGACACACTCGCTGCTCTTAGGTCTTTAATGTCCTCTCACTCTCCTCCTGTTCATGCTTTGATTATTCCTTCCGAAGATTATCATCAG.............................................................................AGCGAATATGTATCGGCACGGGACAAAAGACGCGCATTTGTCTCTGGATTCACCGGAAGTGCTG............................................................................................GTTTGGCGCTTATAACCATGGATGAAGCACTTTTGTGGACCGATGGCCGGTATTTCTTACAGGCAACTCAGCAGCTCAGTAACCAGTGGAAGCTCATGCGTATGGGAGAAGATCCTCCCGTTGATATCTGGATGGCCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTACCAAAGGATGCAGCCATTGGTGTTGATACATGGTGTGTATCAGTAGATACTGCGCAGAAATGGGAGTGTGCTTTTGCTAAGAAACAACAAAAGTTGGTACAAACAACTAGAAACTTGGTTGATGAAGTTTGGAAAAATCGGCTACCTGCCCAAGCAAATCCTGTAATTGTGCATCCGTTGCAATTTGCTGGTCAGTCTNGTGCAGANTAGTTGAAAGAATTGAGGAGAAAGCTTGTACTGGGAAAAGCTCATACTATTATTATAACAGCACTTGATGAA.....................................................................................................GTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272611" ref_strand="+" ref_description="SGN-E272611 [cLEM-21-L13]">
      <seq>ccctgttgagatagaaggattaaagaaggcccattttcgggatggggcagctgttgtgcaatatcttgtctggcttgataagcagatgcaggaaatatatggagcatctggttatttcatggaggctgagagtaccaaacagaagaaacaactggggactaaaagactgacagaagtctctgtgagtgataagctggaggagttccgtgcatcaaaggagcattttagaggattaagtttccgaactacctcttctgttggctcaaatgcagccattatccactataaacctgaggcagaaacatgtgctgaactcgatccagattgtatttacctattcgattctggagcacagtatctggatggaacaactgatattacacggactattcatttcggaaaaccttctccacatgagaaatctagttacacggcggttcttaaaggacatatatctttgggaaacgccaggtttcctaacggaaccaatgggcaagctcttgacattcttgctcgaattcctttgtggaaagatggtcttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttgttataagaatagagaatgttcttattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="51425" stop="55724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51725" g_stop="51809" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51810" i_stop="52253" i_length="444">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52254" g_stop="52321" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="153" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52322" i_stop="52775" i_length="454">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52776" g_stop="52842" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="220" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52843" i_stop="53461" i_length="619">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53462" g_stop="53596" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="355" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53597" i_stop="53693" i_length="97">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53694" g_stop="53774" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53775" i_stop="54444" i_length="670">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54445" g_stop="54499" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="491" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54500" i_stop="54693" i_length="194">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.248" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54694" g_stop="54798" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="596" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="668" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55366" g_stop="55424" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="727" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E272611" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51725" e_stop="51809"/>
          <exon e_start="52254" e_stop="52321"/>
          <exon e_start="52776" e_stop="52842"/>
          <exon e_start="53462" e_stop="53596"/>
          <exon e_start="53694" e_stop="53774"/>
          <exon e_start="54445" e_stop="54499"/>
          <exon e_start="54694" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGTTGAGATAGAAGGATTAAAGAAGGCCCATTTTCGGGATGGGGCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAGGTACGTCAGATTCTTAGAGTCAATCTTCTAGTAATCTTTGTGAGTTACTGCCACCTACTGCATTTGCATCTTCCTTAGATTCTATAAGTATGTAGACATGTGTGTATGTATGTACTTTGTGTGTGCGCGTGCGTCTATGTATATATGTGTGTATGGTTTCTTTTTAATCTTTATACAAGTGACGAGTGCAAGTTGGTATATACCGATAAAACCAAATATGTCGGGTTAGAAATTCTGTCCTATGCAAAACTAGAAGAGTAGAAGGATAATGTATCTCTCAGAAAAAGATGTTATGTCTACTTGCAATGCCTTTTTGCAAATGGTGTGAACTTTATATCTTTAGCAGGGATCTCTTCACTTTTTAGGTGCAGAAACACTTGATTCAAGCTATTCATGGTTTCAGTAGTTTGGCAAGATGAGTTTCAACTTGTTCAAATTTTCCAGATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACTGTAAGTATTTCTGGTTTCTTGTACTTTTTCATGTTTTTGGCGAGTAAGTACATTCTAAGAATTGATCTCTTATAGGATGTTAGTTCAGGACTTTTGTCCCCCCCTCGACAATTCAGGATCCAAGAAAAAAGGAATTAGTCTATTAAAGCTGGCATCTTTTGTTGATAGGAAGATGCATTATCCAAGAAGTGATTTCTTGATTTAGTCTGTGTAGAAGGTTATTCTTGTGGGCTGTGTGGATTTCAAAATTTAAGACTTTGTTTTCTTAAGATAGAGCCAAGACTTTTAGTGGCCCTTGATTTTCTGAAGGAAGCTTCTGCAAGTTACTGATCTTCAGTCAATAATTAAGTGATTATTGAGGAACTTATCATGAAGCATGGGATATATTATATTGTTTTCCTTAGTAGTGGGTCCATGTTTTGTACCTTATTTTTGTAATAATTCACTATGTTAGGGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAGGTAAATGGTTGTATTCTGATGAAAACTCTAGCATGAAATCTGTTGTCTTATACTCTTATCACTCTATTTATGTATGAGTTATCGTCATCTAGGTTGTGAGCTGATGATGACTCTAGAGTTTATTTCCAGTTTGTTGCTTCTGTTTAACTGCTATGTTATTGTTTCCAGAACCACATGATATGCTGATTTCGACTCGAGCTCTTTCCAGTTACACGCTGGCATATTTTCTCTATCTTTATTTTTTAAAATGTACAAGAACAATAATATCATTTTTCTATTGTATCCGCATTGCAAGTGAGTGTAGTGATTTAAAAATAGACAAGTATAAGGGGTGGCAAAAAAAAAAGGAGGTAAAAAGTACGAGTATGTATTATCAAAATGTTAATAACATGTATTGGGATTCAGGAGTACTTAAGATACCTCGGGATAATATGTTTAGTTGCTTCAATTAACTAGAAGTTTTTGCCTTGAGCTCTTCCAACAAGTGCAGCTTGGTTCCTTTTCTGATGGTTGTGATCTTTCTTGAAGTTAGCAAAATCATTAAGAATCTTGTTTTCTCAACAATAGTATCACCATTATCTTAATGTAATGGGGTAATGTTGCTCCTCTACATCTGCAGCATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAGGTATGTGAGAACTGAGAGCATATATTCGGGATTGCTACTTTGCGTACTTCTATATTTAACATGTGATCTTTCTATATATATGATGGTGTTGCTGAAGTATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCGGTATGTGAAAAGTGTTCTGCATTTTTATGATTCCAAACCATGTCGGCTATGCATGATGGAGTGAAATTTCATAATGAGAGTTCTGATTTCAGATTACTATTGCTGATCTTATCTATGTCCGGTCTCCTTCCACACTTGGTCACGCTTCCTTTAGATCATTCTAGAAGCGTTAATCCATTTAAGCCTTGATTAGAGAATCTATTGGAGGCATTATTCTCCTAGAGATCTCTAGTTCTTTTATTCCAGTGCTTCTATCATGTAATCCTTCTTATTCAAGTCTTAACATACATGCATTACACATGCTTTCCTGTGGGAAATTCTCTCTTTGCTATGAATGTTGATTGAAATCCATAAAAATTGTAGAGCAAAAGAAATTGTCTTATGAGTAAACAAAGCAACAGTAAGTCGAAACTTTTCTGTAAATTGCCTTCGTTATTCTTTAGGTTTTCTTTTCTGGTTTATCTTTTTAGGGGTGACTGAGAAAGGATAATGATTGGCTATACTTCGAACAGTTTTTTTTTTTGTATATATATGTATATAGGTTTGTCTTCTATGCTGGTTTTGCTCTGTGTGATTGATTCTTTAGAATCTTATACTGGAAATTTTTGTTCTTTCCGTATCACAATTCAATACTGCATTAATGGCTTAAAGGTTACTTTATTTTATGTAGGTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATGGTATGATTATGTGGAACTTGATACTCGATGTCTGTAATTTTCTGAATTTTCTTCAGTGGTTAGATGTACCAATGCCTATATCCACAGGCTATTATTCAGAGGCATATGCTTACCATTTTCATTTCATTTCATTCAAATGCTGTGGCCCAAGATAGTTGGCTTATCAGAACATTGTGCTTAACTACTCTTGATAGGGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTC</genome_strand>
        <mrna_strand>CCCTGTTGAGATAGAAGGATTAAAGAAGGCCCATTTTCGGGATGGGGCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAG.................................................................................................TATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATG..................................................................................................................................................................................................GGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGTTATAAGAATAGAGAATGTTCTTATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309416" ref_strand="+" ref_description="SGN-E309416 [cLEY-22-F16]">
      <seq>gcagctgttgtgcaatatcttgtctggcttgataagcagatgcaggaaatatatggagcatctggttatttcatggaggctgagagtaccaaacagaagaaacaactggggactaaaagactgacagaagtctctgtgagtgataagctggaggagttccgtgcatcaaaggagcattttagaggattaagtttccgaactacctcttctgttggctcaaatgcagccattatccactataaacctgaggcagaaacatgtgctgaactcgatccagattgtatttacctattcgattctggagcacagtatctggatggaacaactgatattacacggactattcatttcggaaaaccttctccacatgagaaatctagttacacggcggttcttaaaggacatatatctttgggaaacgccaggtttcctaacggaaccaatgggcaagctcttgacattcttgctcgaattcctttgtggaaagatggtcttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="51471" stop="55244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51771" g_stop="51809" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51810" i_stop="52253" i_length="444">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.778" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52254" g_stop="52321" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="107" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52322" i_stop="52775" i_length="454">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52776" g_stop="52842" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="174" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52843" i_stop="53461" i_length="619">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53462" g_stop="53596" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="309" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53597" i_stop="53693" i_length="97">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53694" g_stop="53774" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="390" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53775" i_stop="54444" i_length="670">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54445" g_stop="54499" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="445" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54500" i_stop="54693" i_length="194">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.248" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54694" g_stop="54798" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="550" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="622" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E309416" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51771" e_stop="51809"/>
          <exon e_start="52254" e_stop="52321"/>
          <exon e_start="52776" e_stop="52842"/>
          <exon e_start="53462" e_stop="53596"/>
          <exon e_start="53694" e_stop="53774"/>
          <exon e_start="54445" e_stop="54499"/>
          <exon e_start="54694" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAGGTACGTCAGATTCTTAGAGTCAATCTTCTAGTAATCTTTGTGAGTTACTGCCACCTACTGCATTTGCATCTTCCTTAGATTCTATAAGTATGTAGACATGTGTGTATGTATGTACTTTGTGTGTGCGCGTGCGTCTATGTATATATGTGTGTATGGTTTCTTTTTAATCTTTATACAAGTGACGAGTGCAAGTTGGTATATACCGATAAAACCAAATATGTCGGGTTAGAAATTCTGTCCTATGCAAAACTAGAAGAGTAGAAGGATAATGTATCTCTCAGAAAAAGATGTTATGTCTACTTGCAATGCCTTTTTGCAAATGGTGTGAACTTTATATCTTTAGCAGGGATCTCTTCACTTTTTAGGTGCAGAAACACTTGATTCAAGCTATTCATGGTTTCAGTAGTTTGGCAAGATGAGTTTCAACTTGTTCAAATTTTCCAGATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACTGTAAGTATTTCTGGTTTCTTGTACTTTTTCATGTTTTTGGCGAGTAAGTACATTCTAAGAATTGATCTCTTATAGGATGTTAGTTCAGGACTTTTGTCCCCCCCTCGACAATTCAGGATCCAAGAAAAAAGGAATTAGTCTATTAAAGCTGGCATCTTTTGTTGATAGGAAGATGCATTATCCAAGAAGTGATTTCTTGATTTAGTCTGTGTAGAAGGTTATTCTTGTGGGCTGTGTGGATTTCAAAATTTAAGACTTTGTTTTCTTAAGATAGAGCCAAGACTTTTAGTGGCCCTTGATTTTCTGAAGGAAGCTTCTGCAAGTTACTGATCTTCAGTCAATAATTAAGTGATTATTGAGGAACTTATCATGAAGCATGGGATATATTATATTGTTTTCCTTAGTAGTGGGTCCATGTTTTGTACCTTATTTTTGTAATAATTCACTATGTTAGGGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAGGTAAATGGTTGTATTCTGATGAAAACTCTAGCATGAAATCTGTTGTCTTATACTCTTATCACTCTATTTATGTATGAGTTATCGTCATCTAGGTTGTGAGCTGATGATGACTCTAGAGTTTATTTCCAGTTTGTTGCTTCTGTTTAACTGCTATGTTATTGTTTCCAGAACCACATGATATGCTGATTTCGACTCGAGCTCTTTCCAGTTACACGCTGGCATATTTTCTCTATCTTTATTTTTTAAAATGTACAAGAACAATAATATCATTTTTCTATTGTATCCGCATTGCAAGTGAGTGTAGTGATTTAAAAATAGACAAGTATAAGGGGTGGCAAAAAAAAAAGGAGGTAAAAAGTACGAGTATGTATTATCAAAATGTTAATAACATGTATTGGGATTCAGGAGTACTTAAGATACCTCGGGATAATATGTTTAGTTGCTTCAATTAACTAGAAGTTTTTGCCTTGAGCTCTTCCAACAAGTGCAGCTTGGTTCCTTTTCTGATGGTTGTGATCTTTCTTGAAGTTAGCAAAATCATTAAGAATCTTGTTTTCTCAACAATAGTATCACCATTATCTTAATGTAATGGGGTAATGTTGCTCCTCTACATCTGCAGCATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAGGTATGTGAGAACTGAGAGCATATATTCGGGATTGCTACTTTGCGTACTTCTATATTTAACATGTGATCTTTCTATATATATGATGGTGTTGCTGAAGTATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCGGTATGTGAAAAGTGTTCTGCATTTTTATGATTCCAAACCATGTCGGCTATGCATGATGGAGTGAAATTTCATAATGAGAGTTCTGATTTCAGATTACTATTGCTGATCTTATCTATGTCCGGTCTCCTTCCACACTTGGTCACGCTTCCTTTAGATCATTCTAGAAGCGTTAATCCATTTAAGCCTTGATTAGAGAATCTATTGGAGGCATTATTCTCCTAGAGATCTCTAGTTCTTTTATTCCAGTGCTTCTATCATGTAATCCTTCTTATTCAAGTCTTAACATACATGCATTACACATGCTTTCCTGTGGGAAATTCTCTCTTTGCTATGAATGTTGATTGAAATCCATAAAAATTGTAGAGCAAAAGAAATTGTCTTATGAGTAAACAAAGCAACAGTAAGTCGAAACTTTTCTGTAAATTGCCTTCGTTATTCTTTAGGTTTTCTTTTCTGGTTTATCTTTTTAGGGGTGACTGAGAAAGGATAATGATTGGCTATACTTCGAACAGTTTTTTTTTTTGTATATATATGTATATAGGTTTGTCTTCTATGCTGGTTTTGCTCTGTGTGATTGATTCTTTAGAATCTTATACTGGAAATTTTTGTTCTTTCCGTATCACAATTCAATACTGCATTAATGGCTTAAAGGTTACTTTATTTTATGTAGGTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATGGTATGATTATGTGGAACTTGATACTCGATGTCTGTAATTTTCTGAATTTTCTTCAGTGGTTAGATGTACCAATGCCTATATCCACAGGCTATTATTCAGAGGCATATGCTTACCATTTTCATTTCATTTCATTCAAATGCTGTGGCCCAAGATAGTTGGCTTATCAGAACATTGTGCTTAACTACTCTTGATAGGGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG</genome_strand>
        <mrna_strand>GCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAG.................................................................................................TATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATG..................................................................................................................................................................................................GGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339579" ref_strand="+" ref_description="SGN-E339579 [cTOE-16-B21]">
      <seq>tcttctgttggctcaaatgccagccattatccactataaacctgaggcagaaacatgtgctgaactcgatccagattgtatttacctattcgattctggagcacagtatctggatggaacaactgatattacacggactattcatttcggaaaaccttctccacatgagaaatctagttacacggcggttcttaaaggacatatatctttgggaaacgccaggtttcctaacggaaccaatgggcaagctcttgacattcttgctcgaattcctttgtggaaagatggtcttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="53192" stop="55192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53492" g_stop="53596" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53597" i_stop="53693" i_length="97">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53694" g_stop="53774" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="187" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53775" i_stop="54444" i_length="670">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54445" g_stop="54499" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="242" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54500" i_stop="54693" i_length="194">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.248" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54694" g_stop="54798" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="347" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54873" g_stop="54892" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="367" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E339579" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53492" e_stop="53596"/>
          <exon e_start="53694" e_stop="53774"/>
          <exon e_start="54445" e_stop="54499"/>
          <exon e_start="54694" e_stop="54798"/>
          <exon e_start="54873" e_stop="54892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGTTGGCTCAAATG-CAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAGGTATGTGAGAACTGAGAGCATATATTCGGGATTGCTACTTTGCGTACTTCTATATTTAACATGTGATCTTTCTATATATATGATGGTGTTGCTGAAGTATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCGGTATGTGAAAAGTGTTCTGCATTTTTATGATTCCAAACCATGTCGGCTATGCATGATGGAGTGAAATTTCATAATGAGAGTTCTGATTTCAGATTACTATTGCTGATCTTATCTATGTCCGGTCTCCTTCCACACTTGGTCACGCTTCCTTTAGATCATTCTAGAAGCGTTAATCCATTTAAGCCTTGATTAGAGAATCTATTGGAGGCATTATTCTCCTAGAGATCTCTAGTTCTTTTATTCCAGTGCTTCTATCATGTAATCCTTCTTATTCAAGTCTTAACATACATGCATTACACATGCTTTCCTGTGGGAAATTCTCTCTTTGCTATGAATGTTGATTGAAATCCATAAAAATTGTAGAGCAAAAGAAATTGTCTTATGAGTAAACAAAGCAACAGTAAGTCGAAACTTTTCTGTAAATTGCCTTCGTTATTCTTTAGGTTTTCTTTTCTGGTTTATCTTTTTAGGGGTGACTGAGAAAGGATAATGATTGGCTATACTTCGAACAGTTTTTTTTTTTGTATATATATGTATATAGGTTTGTCTTCTATGCTGGTTTTGCTCTGTGTGATTGATTCTTTAGAATCTTATACTGGAAATTTTTGTTCTTTCCGTATCACAATTCAATACTGCATTAATGGCTTAAAGGTTACTTTATTTTATGTAGGTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATGGTATGATTATGTGGAACTTGATACTCGATGTCTGTAATTTTCTGAATTTTCTTCAGTGGTTAGATGTACCAATGCCTATATCCACAGGCTATTATTCAGAGGCATATGCTTACCATTTTCATTTCATTTCATTCAAATGCTGTGGCCCAAGATAGTTGGCTTATCAGAACATTGTGCTTAACTACTCTTGATAGGGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTC</genome_strand>
        <mrna_strand>TCTTCTGTTGGCTCAAATGCCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAG.................................................................................................TATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATG..................................................................................................................................................................................................GGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377722" ref_strand="+" ref_description="SGN-E377722 [TUS-20-M2]">
      <seq>ttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaaggagggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccagaggaaactaattgacgtgagccttctgattcctgaagagattgaatggttaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtagttaaatcataaagatgcgacaagtctatgctgcgtttcgacggagttaataccgtaactcatttttgcgggctcgctttgcttattcttctccttcccctcactatacagctcccattatctttgaactctttcattaattggntacaactacaacactctgaaataaaatctccaaacaacggcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="54442" stop="56467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54742" g_stop="54798" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="129" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="254" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55730" g_stop="56168" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="693" r_length="439" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E377722" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54742" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCACATAAT</genome_strand>
        <mrna_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTTGCTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGNTACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377504" ref_strand="+" ref_description="SGN-E377504 [TUS-20-N1]">
      <seq>ttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggaccttataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaaggacggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccataggaaactaattgacgtgagccttctgattcctgaagagattgaatggttaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtagttaaatcataaagatgcgacaagtctatgctgcgtttcgacggagttaataccgtaactcatttttgcgggctcgcttgctttattcttctccttccccttactatacagctcccattatctttgaactctttaattaattggtaacaactacaacactttgaaattaaatttccaaacaaccggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="54442" stop="56467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54742" g_stop="54798" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="129" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="254" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55730" g_stop="56159" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="684" r_length="430" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E377504" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54742" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACG</genome_strand>
        <mrna_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTTATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGACGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCATAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTTACTATACAGCTCCCATTATCTTTGAACTCTTTAATTAATTGGTAACAACTACAACACTTTGAAATTAAATTTCCAAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231960" ref_strand="+" ref_description="SGN-E231960 [cLED-7-E13]">
      <seq>ttgactataggcatggtactggacacgggatcgggtcttacttaaatgtacatgaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaaggagggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccagaggaaactaattgacgtgagccttctgattcctgaagagattgaatgggtaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtaggtaaatcataaagatgcgaccagtctatgctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="54442" stop="56310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54742" g_stop="54798" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="129" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="254" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55730" g_stop="56010" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="535" r_length="281" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E231960" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54742" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCG</genome_strand>
        <mrna_strand>TTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGGTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGGTAAATCATAAAGATGCGACCAGTCTATGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377503" ref_strand="+" ref_description="SGN-E377503 [TUS-20-N1](-)">
      <seq>tcggggtcttacttaaatgtacataaaggacctcataatattagtttcaggccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaaggagggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccagaggaaactaattgacgtgagccttctgattcctgaagagattgaatggttaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtagttaaatcataaagatgcgacaagtctatgctgcgtttcgacggagttaataccgtaactcatttttgcgggctcgcttgctttattcttctccttcccctcactatacagctcccattatctttgaactctttcattaattggtaacaactacaacactctgaaataaaatctccaaaaaacggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="54472" stop="56467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54772" g_stop="54798" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54873" g_stop="54944" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="100" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="225" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55730" g_stop="56172" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="668" r_length="443" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E377503" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54772" e_stop="54798"/>
          <exon e_start="54873" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-GGGTCTTACTTAAATGTACATGAAGGTAAACTTGCCATCATGATTATTGAGGTACTTTTAAGGAGCAATTTATATTTACATTTAATTTATTTTTGGCAGGACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCACATAATGTTT</genome_strand>
        <mrna_strand>TCGGGGTCTTACTTAAATGTACATAAAG..........................................................................GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAAAAACGGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377721" ref_strand="+" ref_description="SGN-E377721 [TUS-20-M2](-)">
      <seq>gccatctgcacgggatgtgccgctacaagtttcaatggctgtaacagatgaacctggttattatgaagacgggaactttggtataagaatagagaatgttcttattgtcaagaagggccatacgaagttcaacttcggcaataagggctacttatcatttgagcatataacttgggcaccataccagaggaaactaattgacgtgagccttctgattcctgaagagattgaatggttaaatgaataccatgcaaaatgtagggaaattcttactccttacctgaatacatctgagatggaatggctgaagaaggctaccgaacccattgcagcttgacatgcctcatttgttaggggattggagttgaggttaatcaaaggctactgatccttttccagcttaagcccttcatcatatgtagttaaatcataaagatgcgacaagtctatgctgcgtttcgacggagttaataccgtaactcatttttgcgggctcgcttgctttattcttctccttcccctcactatacagctcccattatctttgaactctttcattaattggtaacaactacaacactctgaaataaaatctccaaacaacggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="54595" stop="56467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54895" g_stop="54944" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55366" g_stop="55490" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="175" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55730" g_stop="56172" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="618" r_length="443" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E377721" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54895" e_stop="54944"/>
          <exon e_start="55366" e_stop="55490"/>
          <exon e_start="55730" e_stop="56172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATGGTCGGTAGCATCTTATTACATTACGAGTTATAAAGTAAACTTTTCCTTAGCATGATTGATGCCTCTGCGTTATTGACTGTATTTTCACTCCTAACATGGATTAGTGGGTTTGTCATGCTTCTTTACGAAGGATGTGCATTAGTAAATATCCTATCCTAACATAGTCGGTCCTGAATTTGCTTACTGGAGATCTACAACTTACAGAACTGATATGATCAGGGGAAATGTAATGTTTTTCTAGTTATACTAGTAAGAGAATGGCCTGTCAATAAAATTAGGATAAACCACGTCATACCATCATGTTGTCCAGCTTGCTCAATAATCTAACAGTTTTACCTTTCTAGTTGCTTCTGCACATCTTTATAGTTTTCTTGTTTCAGCTTTTCAGAGTTTGAACATTCATATGGTATATATTTTTCAGAACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGGGTAAGTTTGTAAACACCATGTTTTATGTCTATTTACATACGTGATATGCATCTACCTAGATGTTCTAGATGTACAAGTGTGTGGTGCGATTGCACTTTTGCAGTCCAAGAGGAAGCAAGACATTCTCTGTCCTTTTCTGTTTGTATTTTTTTTAAAACTTGGATTATCACTTACTTCCTAATTCTATAGGTTGGAAGTGTTATGTGTCATGAAGGTAAGAATCTTGTTTGTTAATGTAGGCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCACATAATGTTT</genome_strand>
        <mrna_strand>GCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGAAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG...............................................................................................................................................................................................................................................GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365448" ref_strand="+" ref_description="SGN-E365448 [cLPT-2-M2]">
      <seq>tcaaaatttatcatcagatggatgatttaggcacccccagatcagctatttccttcaatgtgcttttatcagcttgcgtgcgctcaaaactatatgatcgtgtcccccagctgtttgatgaaattccagtgaagtatagatttttacctgataaagtgtcgtacggtatactgattaggtcatattgtgaaacggggttgccggaaatggcaatggaaatactcaaggtgatggaggagaaaagtgtggagattacaacggttactttcactactatactacattcattctacaagaaagggaagagtgatgaggcggagaaggtatggaatgagatggtgaacagagggtgtggtccagatgttggtgcatacaatgtgaagattatgaacattcaggggggtgatctggagggcgtgaaagctttaattgaggaaatgaacgatgctggattgaaacctgatacgattagctacaattatttgatgacttgttattgtaagaatgaattgatggacgaggcacagatggtttatgatgatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="59096" stop="60241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59396" g_stop="59941" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E365448" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59396" e_stop="59941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGATCAGCTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATCGTGTCCCCCAGCTGTTTGATGAAATTCCAGTGAAGTATGGATTTTTACCTGATAAAGTGTCGTACGGTATACTGATTAGGTCATATTGTGAAACGGGGTCGCCGGAAATGGCAATGGAAATACTCAAGGTGATGGAGGAGAAAAGTGTGGAGATTACAACGGTTACTTTCACTACTATACTTCATTCATTCTACAAGAAAGGGAAGAGTGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAGAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATTATGAACATTCAGGGGGGTGATCTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGAACGATGCTGGATTGAAACCTGATACGATTAGCTACAATTACTTGATGACTTGTTATTGTAAGAATGAATTGATGGATGAGGCACAGATGGTTTATGATGATCTGG</genome_strand>
        <mrna_strand>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGATCAGCTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATCGTGTCCCCCAGCTGTTTGATGAAATTCCAGTGAAGTATAGATTTTTACCTGATAAAGTGTCGTACGGTATACTGATTAGGTCATATTGTGAAACGGGGTTGCCGGAAATGGCAATGGAAATACTCAAGGTGATGGAGGAGAAAAGTGTGGAGATTACAACGGTTACTTTCACTACTATACTACATTCATTCTACAAGAAAGGGAAGAGTGATGAGGCGGAGAAGGTATGGAATGAGATGGTGAACAGAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATTATGAACATTCAGGGGGGTGATCTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGAACGATGCTGGATTGAAACCTGATACGATTAGCTACAATTATTTGATGACTTGTTATTGTAAGAATGAATTGATGGACGAGGCACAGATGGTTTATGATGATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234583" ref_strand="+" ref_description="SGN-E234583 [cLEL-6-P21](-)">
      <seq>ggcaccagagtggctgttgggccaaaggtattgccaacaaaggaagtggtggaaagggaagaaatagagcaattggtgagaatggtaatgcaatataaagaaggaaatgaattgaaggaaaatgtgaagaaactgaagatgagtgcagagaaagccctaagtataggaggctcctctcatgattcaatgtgtcaagtcctcagagacattgagaagagatctatccatggttgcaagaacattaaggtgtgaggaaactatctaaaaagggtaagataatgagtgattagggctatatataccctaaagttgtctatgttatgttgttattatgtgctactataatttacagtatgcatgtttcgaatagaatttacctctataataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="66298" stop="65310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66005" g_stop="65613" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="406"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E234583" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66005" e_stop="65613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTAGAGTGGCTGTTGGGCCAAAGGTATTGCCAACAAAGGAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGAAATGAATTGAAGGAAAATGTGAAGAAACTGAAGATGAGTGCAGAGAAAGCACTAAGTATAGGAGGCTCCTCTCATGATTCAATGTGTCAAGTCCTCAGAGACATTGAGAAGAGATCTATCCATGGTTGCAAGAACATTAAGGTGTGAGGAAACTATCTAAAAAGGGTAAGATAATGAGTGATTAGGGCTATATATACCCTAAAGTTGTCTATGTTATGTTGTTATTATGTGCTACTATAATTTACAGTATGCATGTTTCGAATAGAATTTACCACTATAATAAAGCA</genome_strand>
        <mrna_strand>GGCAC-CAGAGTGGCTGTTGGGCCAAAGGTATTGCCAACAAAGGAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGAAATGAATTGAAGGAAAATGTGAAGAAACTGAAGATGAGTGCAGAGAAAGCCCTAAGTATAGGAGGCTCCTCTCATGATTCAATGTGTCAAGTCCTCAGAGACATTGAGAAGAGATCTATCCATGGTTGCAAGAACATTAAGGTGTGAGGAAACTATCTAAAAAGGGTAAGATAATGAGTGATTAGGGCTATATATACCCTAAAGTTGTCTATGTTATGTTGTTATTATGTGCTACTATAATTTACAGTATGCATGTTTCGAATAGAATTTACCTCTATAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235255" ref_strand="+" ref_description="SGN-E235255 [cLEL-6-P21](-)">
      <seq>tgttgggccaaaggtattgccaacaaaggaagtggtggaaagggaagaaatagagcaattggtgagaatggtaatgcaatataaagaaggaaatgaattgaaggaaaatgtgaagaaactgaagatgagtgcagagaaagccctaagtataggaggctcctctcatgattcaatgtgtcaagtcctcagagacattgagaagagatctatccatggttgcaagaacattaaggtgtgaggaaactatctaaaaagggtaagataatgagtgattagggctatatataccctaaagttgtctatgttatgttgttattatgtgctactataatttacagtatgcatgtttcgaatagaattttcccctataataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="66290" stop="65310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65990" g_stop="65613" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="392"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E235255" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65990" e_stop="65613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGCCAAAGGTATTGCCAACAAAGGAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGAAATGAATTGAAGGAAAATGTGAAGAAACTGAAGATGAGTGCAGAGAAAGCACTAAGTATAGGAGGCTCCTCTCATGATTCAATGTGTCAAGTCCTCAGAGACATTGAGAAGAGATCTATCCATGGTTGCAAGAACATTAAGGTGTGAGGAAACTATCTAAAAAGGGTAAGATAATGAGTGATTAGGGCTATATATACCCTAAAGTTGTCTATGTTATGTTGTTATTATGTGCTACTATAATTTACAGTATGCATGTTTCGAATAGAATTTACCACTATAATAAAGCA</genome_strand>
        <mrna_strand>TGTTGGGCCAAAGGTATTGCCAACAAAGGAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGAAATGAATTGAAGGAAAATGTGAAGAAACTGAAGATGAGTGCAGAGAAAGCCCTAAGTATAGGAGGCTCCTCTCATGATTCAATGTGTCAAGTCCTCAGAGACATTGAGAAGAGATCTATCCATGGTTGCAAGAACATTAAGGTGTGAGGAAACTATCTAAAAAGGGTAAGATAATGAGTGATTAGGGCTATATATACCCTAAAGTTGTCTATGTTATGTTGTTATTATGTGCTACTATAATTTACAGTATGCATGTTTCGAATAGAATTTTCCCCTATAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E621702" ref_strand="+" ref_description="SGN-E621702 [72061]">
      <seq>tgtcttgatgaacacttgggaagacgcggagaccggttcactcaaagcgttaagagaaaatgatatattaaaagctatcgtgaagtcaccggtttatccggttggaccgttgattagacatgaccaacaaatcattgatggccggagtggagatgatgatggtaacaattctgtcctaaattggttggacaaacaaattcctaattcagtgctatacatatctttcgggagtggtgggaccctctcatcaaaacagttaactgagttagcttttggactagagttaagtcatcagaagttcatttgggtggtgaggccaccgtcagaggtcggtgcagacaagtcatttttcacaactggaaatcggggcgacaacactcctgagtacttgccagaaggttttctaacacggacaaaagatttggattggtgatccagatgtggacggatcaaacaagaatcttgagccacccatcagttgggggattttttgacccactgtggatggaattctagcattgagagtataacaaatggtttgccaatgattgcgtgggcgttatatgctgaacagaggcaaaatgccactatgcttacggaggagcttagagtggctgttaggccaaaggtattgccaacaaagcaaagtggtggcaaaggaagaaatagagcaattggtgagaatggtaattgcatataaagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="66894" stop="65600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66596" g_stop="65900" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E621702" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66596" e_stop="65900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGATGAACACTTGGGAAGACGCGGAGGCCGGTTCACTCAAAGCGTTAAGAGAAAATGAAATATTAAAAGCTATAGTGAAGTCACCGGTTTATCCGGTTGGACCATTGATTAGACAAGAACAACAAATCATTGA---------TGGAGATGATGATGGTAACAATTCTGTCCTAAATTGGTTGGATAAACAAATGCCTAATTCAGTGCTATACATATCTTTCGGGAGTGGTGGGACCCTCTCGTCAAAACAATTAACTGAGTTAGCTTTTGGGTTGGAGTTAAGTCATCAGAAGTTCATTTGGGTGGTGAGGCCACCGTCAGAAGATGGTGCAGACAAGTCATATTTCACAACTGGAGATCAGGGCAAGAACACTCCTGAGTACTTGCCAGAAGGTTTTCAAACACGGACCAAAGATTTTGGATTGGTGATTCAGATGTGGACGGATCAAACAAGAATCTTGAGCCACCCATCAGTCGGGGGA-TTTTTGACGCACTGTGGATGGAATTCTAGCATTGAGAGTATAACAAATGGTTTGCCAATGATTGCGTGGCCGTTATATGCTGAACAGAGACAAAATGCTACTATGCTCACGGAGGAACTTAGAGTGGCTGTTGGGCCAAAGGTATTGCCAACAAAG-GAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGA</genome_strand>
        <mrna_strand>TGTCTTGATGAACACTTGGGAAGACGCGGAGACCGGTTCACTCAAAGCGTTAAGAGAAAATGATATATTAAAAGCTATCGTGAAGTCACCGGTTTATCCGGTTGGACCGTTGATTAGACATGACCAACAAATCATTGATGGCCGGAGTGGAGATGATGATGGTAACAATTCTGTCCTAAATTGGTTGGACAAACAAATTCCTAATTCAGTGCTATACATATCTTTCGGGAGTGGTGGGACCCTCTCATCAAAACAGTTAACTGAGTTAGCTTTTGGACTAGAGTTAAGTCATCAGAAGTTCATTTGGGTGGTGAGGCCACCGTCAGAGGTCGGTGCAGACAAGTCATTTTTCACAACTGGAAATCGGGGCGACAACACTCCTGAGTACTTGCCAGAAGGTTTTCTAACACGGACAAAAGA-TTTGGATTGGTGATCCAGATGTGGACGGATCAAACAAGAATCTTGAGCCACCCATCAGTTGGGGGATTTTTTGACCCACTGTGGATGGAATTCTAGCATTGAGAGTATAACAAATGGTTTGCCAATGATTGCGTGGGCGTTATATGCTGAACAGAGGCAAAATGCCACTATGCTTACGGAGGAGCTTAGAGTGGCTGTTAGGCCAAAGGTATTGCCAACAAAGCAAAGTGGTGGCAAAGGAAGAAATAGAGCAATTGGTGAGAATGGTAATTGCATATAAAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487202" ref_strand="+" ref_description="SGN-E487202 [cSTE-24-F18]">
      <seq>ccaaactcacccaccaaaacatccctccatctttcttattttccagatttttactcataataacaaaaattgtactgaatcttatcacatattctttacgtttgatgaatgtacgtatattttgagtattgtatggtaagtagatctcaaatcttcatctgggattgtttaaaaatggaatcttgcagcaaataaacagagccacgttgaatggcgagttagtgcccaagaagaaggagaaaggccagcaaaaggttgaccttttttcctttgggtttgatggggttaagcgctagagcttccagattaccttcttctgtttttcgacctaaatctctgctccccagccacctttccaccatgagaacaaggacaatttttgggatctctatttccctaatcatcatcaacatggccgctataatggagcgcgctgatgagaatctccttccagctgtttataaagaagtcagtgaagcttttacagcaggaccatccgatcttgggtttctcacattcataaggaactttgtgcagggaattgcttcgccagtggcaggtattttagttttaaattatgaccgtcccacggttcttgcaattggtatcctcttctgggccatatcaaccggtgcagtgggtgcgagcaagtattttctgcaggttggcttctggagagctantaatggcttcngtctggcaattgtgatacctgctttgcagtccttcatagctgatagctataaggatgaagtcagagggatgggaattgggtttcttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="72176" stop="74760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72467" g_stop="72827" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72828" i_stop="74040" i_length="1213">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74041" g_stop="74460" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="785" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E487202" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72467" e_stop="72827"/>
          <exon e_start="74041" e_stop="74460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACTCATCACCCACCAAAACATCCCTCCATCTTTCTTATTATCCAGATTTTGTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACG--TA---T-A-T-T-GTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCC---CAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAGGTCAGGTTTCACTTTTATTGCAGCTTCAATTATTAGTATTTTCTTTATGGGTTTTAGGATTCCCTGTTTCAATTTATATATCAACCTTACAGCTTTTGGTGTTGACTTTACAGGGCTAGAATATTTTCAAGTTTAAAAGACTTACATTGATCTCTTACTTCAGTTTACCTGCAAAAAGTTGAGTTGAAGTTGATGCAAATGAATGACCTAAGTGCAAAAAGAGATTTAATTTATGAAATTTTGACGAACTTGTCAAATTACAAGACCTTTTGAGTTTTAAAAAATTTACCTTGAGCAAGGGAACCTATTTCAGCGTTTAGTTTGTCACCGTGTGTCTTTCCTGTTTCTTCAATGTTATAAGCTTTCACACCTCTCCTCCTCAGAGTAGAACATGTCGTACTGCGCAGCAAGATTTGATGTTTTGTCAATTAGTAGTCAATGAAACTGCTCATTTGATGGAATTTATGGGACTGATCGACATTCACTTCGAGTGCTGTTATAGAAAGCATCATTAGTCTCATTTTGAACCTCACTGAGATGGAGAAAAATGGATCCTCTTGATACTAGCTGAAACTTTGAATCTGGACCTCTTATTAATCACTCATTTGTATGTCAGTTTGACACGCTACTTAATTATCATACATTTTCCTGTTTGTTGCTTTGAAAAATATTTTTAGCTTGAATGTTCTCTTACTTCGTGTCTAAGTTGTCGTTCTTGTTTGAACACCCTCCTGAAAACTCCAACTTTTTAGAGAACATGTTGATAGCCACCATATCCGATCAATTAAGCAGTGTTGTCCTGTGTCATGTTGATAGCAGCTTGCAACTCACAATTTGAAGGCTGCGGTTTCTATCGCTTGTTTTATTTGACTTCAGATAGGGCTTGTACAATGTTACATCAATCAGCTGCAAGAAGCACTTTGTTCAAGTCTTTTCTTTGAGAAATTAATATTTTTTTGTAACTTTATTCAAGTCTTATCCTTCTGCTGATCAAATTTTTGATCGTACAACAAGCTGATATTTCCTGCCACAGAAAATGCAATCCCCTTTGTTTCAGTTCCTAATATATGCTGATTACAATCCAACTTGAAAAACTGTTTAGCCCTAACAATGTACAATTCCGTATATTTCAATTAATTTGATTTTTGGAAGAAGATAGTACGTGTTACTGTAGCATTTCTACTTCTGATTTTAATATATTGCCCCAATACAGAACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGATAGCTACAAGGATGAAGTCAGAGGGACGGGATTTGGGTTTCTTAATCT</genome_strand>
        <mrna_strand>CCAAA--C-TCACCCACCAAAACATCCCTCCATCTTTCTTATTTTCCAGATTTT-TACTCATAATAACAAAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGAATGTACGTATATTTTGAGTATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGATTGTTTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACG-T---TGAATGGCGAGTTAGTGCCCAAGAAGAAGGAGAAAGGCCAGCAAAAGGTTGACCTTTTTTCCTTTGGGTTTGATGGGGTTAAGCGCTAGAGCTTCCAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTCCCCAGCCACCTTTCCACCATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCCGATCTTGGGTTTCTCACATTCATAAGGAACTTTGTGCAGGGAATTGCTTCGCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGTCCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCATATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTANTAATGGCTTCNGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGATAGCTATAAGGATGAAGTCAGAGGGATGGGAATTGGGTTTCTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689310" ref_strand="+" ref_description="SGN-E689310 [t3_tus_84_A19]">
      <seq>cctttcaaaacatccctccatctttcttattatccagatttcctactcataataacataaattgtactgaatcttatcacatattctttacgtttgatgattgtacgtatattgtatggtaagtagatctcaaatcttcatctggggttgtctaaaaatggaatcttgcagcaaataaacagagccacgttgaatgaatggcgagttagtgccccagaaggagaagggccagcaaaaggttgacctttattcctttgggattgatggggttaagcgctagagcttcaagattaccttcttctgtttttcgacctaaatctctgcttcccagccacctttccaccatgagaacaaggacaatttttgggatctctatttccctaatcatcatcaacatggccgctataatggagcgcgctgatgagaatctccttccagctgtttataaagaagtcagtgaagcttttacagcaggaccatctgatcttgggtttctcacattcattaggaactttgtgcagggaattgcttctccagtggcaggtattttagttttaaattatgaccgacccacggttcttgcaattggtatcctcttctgggccctatcaaccggtgcagtgggtgcgagcaagtattttctgcaggttggcttctggagagctgtaaatggcttccgtctggcaattgtgataccttgctttgcagtccttcatagctgatagctacaaggatgaagtcagagggacgggatttgggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="72184" stop="74752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72479" g_stop="72827" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72828" i_stop="74040" i_length="1213">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74041" g_stop="74452" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="762" r_length="413" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E689310" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72479" e_stop="72827"/>
          <exon e_start="74041" e_stop="74452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCAAAACATCCCTCCATCTTTCTTATTATCCAGATTTTGTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACGTATATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCCCAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAGGTCAGGTTTCACTTTTATTGCAGCTTCAATTATTAGTATTTTCTTTATGGGTTTTAGGATTCCCTGTTTCAATTTATATATCAACCTTACAGCTTTTGGTGTTGACTTTACAGGGCTAGAATATTTTCAAGTTTAAAAGACTTACATTGATCTCTTACTTCAGTTTACCTGCAAAAAGTTGAGTTGAAGTTGATGCAAATGAATGACCTAAGTGCAAAAAGAGATTTAATTTATGAAATTTTGACGAACTTGTCAAATTACAAGACCTTTTGAGTTTTAAAAAATTTACCTTGAGCAAGGGAACCTATTTCAGCGTTTAGTTTGTCACCGTGTGTCTTTCCTGTTTCTTCAATGTTATAAGCTTTCACACCTCTCCTCCTCAGAGTAGAACATGTCGTACTGCGCAGCAAGATTTGATGTTTTGTCAATTAGTAGTCAATGAAACTGCTCATTTGATGGAATTTATGGGACTGATCGACATTCACTTCGAGTGCTGTTATAGAAAGCATCATTAGTCTCATTTTGAACCTCACTGAGATGGAGAAAAATGGATCCTCTTGATACTAGCTGAAACTTTGAATCTGGACCTCTTATTAATCACTCATTTGTATGTCAGTTTGACACGCTACTTAATTATCATACATTTTCCTGTTTGTTGCTTTGAAAAATATTTTTAGCTTGAATGTTCTCTTACTTCGTGTCTAAGTTGTCGTTCTTGTTTGAACACCCTCCTGAAAACTCCAACTTTTTAGAGAACATGTTGATAGCCACCATATCCGATCAATTAAGCAGTGTTGTCCTGTGTCATGTTGATAGCAGCTTGCAACTCACAATTTGAAGGCTGCGGTTTCTATCGCTTGTTTTATTTGACTTCAGATAGGGCTTGTACAATGTTACATCAATCAGCTGCAAGAAGCACTTTGTTCAAGTCTTTTCTTTGAGAAATTAATATTTTTTTGTAACTTTATTCAAGTCTTATCCTTCTGCTGATCAAATTTTTGATCGTACAACAAGCTGATATTTCCTGCCACAGAAAATGCAATCCCCTTTGTTTCAGTTCCTAATATATGCTGATTACAATCCAACTTGAAAAACTGTTTAGCCCTAACAATGTACAATTCCGTATATTTCAATTAATTTGATTTTTGGAAGAAGATAGTACGTGTTACTGTAGCATTTCTACTTCTGATTTTAATATATTGCCCCAATACAGAACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACC-TGCTTTGCAGTCCTTCATAGCTGATAGCTACAAGGATGAAGTCAGAGGGACGGGATTTGGGTTT</genome_strand>
        <mrna_strand>CCTTTCAAAACATCCCTCCATCTTTCTTATTATCCAGATTTCCTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACGTATATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCCCAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCCGTCTGGCAATTGTGATACCTTGCTTTGCAGTCCTTCATAGCTGATAGCTACAAGGATGAAGTCAGAGGGACGGGATTTGGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332274" ref_strand="+" ref_description="SGN-E332274 [cTOD-17-M24]">
      <seq>caaaacatccctccatctttcttattatccagattttgtactcataataacataaattgtactgaatcttatcacatattctttacgtttgatgattgtacgtatattgtatggtaagtagatctcaaatcttcatctggggttgtctaaaaatggaatcttgcagcaaataaacagagccacgttgaatgaatggcgagttagtgccccagaaggagaagggccagcaaaaggttgacctttattcctttgggattgatggggttaagcgctagagcttcaagattaccttcttctgtttttcgacctaaatctctgcttcccagccacctttccaccatgagaacaaggacaatttttgggatctctatttccctaatcatcatcaacatggccgctataatggagcgcgctgatgagaatctccttccagctgtttataaagaagtcagtgaagcttttacagcaggaccatctgatcttgggtttctcacattcattaggaactttgtgcagggaattgcttctccagtggcaggtattttagttttaaattatgaccgacccacggttcttgcaattggtatcctcttctgggccctatcaaccggtgcagtgggtgcgagcaagtattttctgcaggttggcttctggagagctgtaaatggcttcggtctggcaattgtgatacctgctttgcagtccttcatagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="72184" stop="74713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72484" g_stop="72827" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72828" i_stop="74040" i_length="1213">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.716" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74041" g_stop="74413" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="717" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E332274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72484" e_stop="72827"/>
          <exon e_start="74041" e_stop="74413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACATCCCTCCATCTTTCTTATTATCCAGATTTTGTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACGTATATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCCCAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAGGTCAGGTTTCACTTTTATTGCAGCTTCAATTATTAGTATTTTCTTTATGGGTTTTAGGATTCCCTGTTTCAATTTATATATCAACCTTACAGCTTTTGGTGTTGACTTTACAGGGCTAGAATATTTTCAAGTTTAAAAGACTTACATTGATCTCTTACTTCAGTTTACCTGCAAAAAGTTGAGTTGAAGTTGATGCAAATGAATGACCTAAGTGCAAAAAGAGATTTAATTTATGAAATTTTGACGAACTTGTCAAATTACAAGACCTTTTGAGTTTTAAAAAATTTACCTTGAGCAAGGGAACCTATTTCAGCGTTTAGTTTGTCACCGTGTGTCTTTCCTGTTTCTTCAATGTTATAAGCTTTCACACCTCTCCTCCTCAGAGTAGAACATGTCGTACTGCGCAGCAAGATTTGATGTTTTGTCAATTAGTAGTCAATGAAACTGCTCATTTGATGGAATTTATGGGACTGATCGACATTCACTTCGAGTGCTGTTATAGAAAGCATCATTAGTCTCATTTTGAACCTCACTGAGATGGAGAAAAATGGATCCTCTTGATACTAGCTGAAACTTTGAATCTGGACCTCTTATTAATCACTCATTTGTATGTCAGTTTGACACGCTACTTAATTATCATACATTTTCCTGTTTGTTGCTTTGAAAAATATTTTTAGCTTGAATGTTCTCTTACTTCGTGTCTAAGTTGTCGTTCTTGTTTGAACACCCTCCTGAAAACTCCAACTTTTTAGAGAACATGTTGATAGCCACCATATCCGATCAATTAAGCAGTGTTGTCCTGTGTCATGTTGATAGCAGCTTGCAACTCACAATTTGAAGGCTGCGGTTTCTATCGCTTGTTTTATTTGACTTCAGATAGGGCTTGTACAATGTTACATCAATCAGCTGCAAGAAGCACTTTGTTCAAGTCTTTTCTTTGAGAAATTAATATTTTTTTGTAACTTTATTCAAGTCTTATCCTTCTGCTGATCAAATTTTTGATCGTACAACAAGCTGATATTTCCTGCCACAGAAAATGCAATCCCCTTTGTTTCAGTTCCTAATATATGCTGATTACAATCCAACTTGAAAAACTGTTTAGCCCTAACAATGTACAATTCCGTATATTTCAATTAATTTGATTTTTGGAAGAAGATAGTACGTGTTACTGTAGCATTTCTACTTCTGATTTTAATATATTGCCCCAATACAGAACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGAT</genome_strand>
        <mrna_strand>CAAAACATCCCTCCATCTTTCTTATTATCCAGATTTTGTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACGTATATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCCCAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357971" ref_strand="+" ref_description="SGN-E357971 [cLHT-32-I15]">
      <seq>ggaaatagagatcccaaatcatcatcaacatggccgctataatggagcgtgctgatgagaatctccttccagctgtttataaagaagtcagtgaagcttttacagcaggaccatctgatcttgggtttctcacattcattaggaactttgtgcagggaattgcttcgccagtggcaggtattttagttttaaattatgaccgtcccacggttcttgcaattggtatcctcttctgggccctatcaaccggtgcagtgggtgcgagcaagtattttctgcaggttggcttctggagagctgtgaatggcttcggtctggcaattgtgatacctgctttgcagtccttcatagctgatagctataaggatgaagtcagagggacgggatttgggtttcttaatctaattggtactgtgggtgggataggaggtggagctatagctacagttatggctggtcatgaatactggggcataccaggatggcgcttttccttcatcgtgatggcaactttgagttgtttcataggatttcttgtcttctcttttgtcgttgacccaaggaagaaaagcagtggccaacatgatatttcaaaacagtctgacagggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="73758" stop="74968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74058" g_stop="74664" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74665" i_stop="74762" i_length="98">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74763" g_stop="74768" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="613" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E357971" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74058" e_stop="74664"/>
          <exon e_start="74763" e_stop="74768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGATAGCTACAAGGATGAAGTCAGAGGGACGGGATTTGGGTTTCTTAATCTAATTGGTACTGTGGGTGGGATAGGAGGTGGAGCTATAGCTACAGTTATGGCTGGTCATGAATACTGGGGCATACCAGGATGGCGCTTTTCCTTCATCGTGATGGCAACTTTGAGTTGTTTCATAGGATTTCTTGTCTTCTCTTTTGTCGTTGACCCAAGGAAGAAAAGCAGTGGCCAGCATGATATTTCAAAACAGTCTGACAGGTATATACACCTTTATGTTCATCAGTTGTTCCATTTCCTATGCTGTTGAGAGTTTTCTACTGTTTGGTGTTGTTATTTTTTATGCTTTCTCATGCTAGGGATGA</genome_strand>
        <mrna_strand>GGAAATAGAGATCCCAAATCATCATCAACATGGCCGCTATAATGGAGCGTGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCGCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGTCCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTGAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGATAGCTATAAGGATGAAGTCAGAGGGACGGGATTTGGGTTTCTTAATCTAATTGGTACTGTGGGTGGGATAGGAGGTGGAGCTATAGCTACAGTTATGGCTGGTCATGAATACTGGGGCATACCAGGATGGCGCTTTTCCTTCATCGTGATGGCAACTTTGAGTTGTTTCATAGGATTTCTTGTCTTCTCTTTTGTCGTTGACCCAAGGAAGAAAAGCAGTGGCCAACATGATATTTCAAAACAGTCTGACAG..................................................................................................GGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547867" ref_strand="+" ref_description="SGN-E547867 [TUS-71-P13]">
      <seq>gttttctttacattatggtttgaattaatcggtaagtggcccttcttttaggaattagcatgttgggttttcttgtgctgatataaattttgtttgtgttaactgcatcaacggtgatcatgaacttctgatgcaggttttgatcataatagtgcagccacacttgtcggtctatttgctgctggatgcgcattaggatccttctttggtggagtagttgcagacaaaatttctcgaatatacccccatacaggacgtgtcatgtgtgctcaatttagttcttttatgggcatcccattctcatggttccttcttcgaattatctctccgtctataagcagctattccacatttgctgtgactttattcataatgggcctcacaatcagctggtgtgctactgctacaaatggtcccatgtttgcagaagtggtgccttcaaagcaccgcaccatgatttatgcttttgatcgtgcgtttgagggttcattttcttcttttgctgctccaattgtagggattcttgctgagaaaatgtacggttatgatgccaaatctgttgatccgatattaggatctccaagggaggctttagcgctgtcaaaaggcctcttttcaatgatggccgtgccttttggtttatgttgcttgttttacacccctttgtattggacattcaagcangatcgtgagaatgcaagacttgctgctgcaaaagaacagagatgatatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="74614" stop="75953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74914" g_stop="75653" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E547867" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74914" e_stop="75653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTTTACATTATGGTTTGAATTAATCGGTAAGTGGCCCCTTTTTTTAGGAATTAGCATGTTGGGTTTTCTTGTGCTGATATAAATTTTGTTTGAGTGTTAACTGCATTAACGGTGATCATGAACTTCTGATGCAGGTTTTGATCATAATAGTGCAGCCACACTTGTCGGTCTATTTGCTGCTGGATGCGCATTAGGATCCTTCTTTGGTGGAGTAGTTGCAGACAAAATGTCTCGAATATACCCCCATACAGGACGTGTCATGTGTGCTCAATTTAGTTCTTTTATGGGCATCCCATTCTCATGGTTCCTTCTTCGAATTATCTCTCCGTCTATAAGCAGCTATTCCACATTTGCTGTGACTTTATTCATAATGGGCCTCACAATCAGCTGGTGTGCTACTGCTACAAATGGTCCCATGTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCATTTTCTTCTTTTGCTGCTCCAATTGTAGGGATTCTTGCTGAGAAAATGTACGGTTATGATGCCAAATCTGTTGATCCGATATTAGGATCTCCTAGGGAGGCTTTAGCGCTGTCAAAAGGTCTCTTTTCAATGATGGCCGTGCCTTTTGGTTTATGTTGCTTGTTTTACACCCCTTTGTATTGGACATTCAAGCAGGACCGTGAGAATGCAAGACTTGCTGCTGCAAAAGAAACAGAGATGATATGACG</genome_strand>
        <mrna_strand>GTTTTCTTTACATTATGGTTTGAATTAATCGGTAAGTGG-CCCTTCTTTTAGGAATTAGCATGTTGGGTTTTCTTGTGCTGATATAAATTTTGTTT--GTGTTAACTGCATCAACGGTGATCATGAACTTCTGATGCAGGTTTTGATCATAATAGTGCAGCCACACTTGTCGGTCTATTTGCTGCTGGATGCGCATTAGGATCCTTCTTTGGTGGAGTAGTTGCAGACAAAATTTCTCGAATATACCCCCATACAGGACGTGTCATGTGTGCTCAATTTAGTTCTTTTATGGGCATCCCATTCTCATGGTTCCTTCTTCGAATTATCTCTCCGTCTATAAGCAGCTATTCCACATTTGCTGTGACTTTATTCATAATGGGCCTCACAATCAGCTGGTGTGCTACTGCTACAAATGGTCCCATGTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCATTTTCTTCTTTTGCTGCTCCAATTGTAGGGATTCTTGCTGAGAAAATGTACGGTTATGATGCCAAATCTGTTGATCCGATATTAGGATCTCCAAGGGAGGCTTTAGCGCTGTCAAAAGGCCTCTTTTCAATGATGGCCGTGCCTTTTGGTTTATGTTGCTTGTTTTACACCCCTTTGTATTGGACATTCAAGCANGATCGTGAGAATGCAAGACTTGCTGCTGCAAAAG-AACAGAGATGATATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366397" ref_strand="+" ref_description="SGN-E366397 [cLPT-1-A18]">
      <seq>ttttctttacattatggtttgaattaatcggtaagtggcccttcttttaggaattagcatgttgggttttcttgtgctgatataaattttgtttgtgttaactgcatcaacggtgatcatgaacttctgatgcaggttttgatcataatagtgcagccacacttgtcggtctatttgctgctggatgcgcattaggatccttctttggtggagtagttgcagacaaaatttctcgaatatacccccatacaggacgtgtcatgtgtgctcaatttagttcttttatgggcatcccattctcatggttccttcttcgaattatctctccgtctataagcagctattccacatttgctgtgactttattcataatgggcctcacaatcagctggtgtgctactgctacaaatggtcccatgtttgcagaagtggtgccttcaaagcaccgcaccatgatttatgcttttgatcgtgcgtttgagggttcattttcttcttttgctgctccaattgtagggattcttgctgagaaaatgtacggttatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="74615" stop="75767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74915" g_stop="75467" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E366397" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74915" e_stop="75467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTACATTATGGTTTGAATTAATCGGTAAGTGGCCCCTTTTTTTAGGAATTAGCATGTTGGGTTTTCTTGTGCTGATATAAATTTTGTTTGAGTGTTAACTGCATTAACGGTGATCATGAACTTCTGATGCAGGTTTTGATCATAATAGTGCAGCCACACTTGTCGGTCTATTTGCTGCTGGATGCGCATTAGGATCCTTCTTTGGTGGAGTAGTTGCAGACAAAATGTCTCGAATATACCCCCATACAGGACGTGTCATGTGTGCTCAATTTAGTTCTTTTATGGGCATCCCATTCTCATGGTTCCTTCTTCGAATTATCTCTCCGTCTATAAGCAGCTATTCCACATTTGCTGTGACTTTATTCATAATGGGCCTCACAATCAGCTGGTGTGCTACTGCTACAAATGGTCCCATGTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCATTTTCTTCTTTTGCTGCTCCAATTGTAGGGATTCTTGCTGAGAAAATGTACGGTTATGATGC</genome_strand>
        <mrna_strand>TTTTCTTTACATTATGGTTTGAATTAATCGGTAAGTGG-CCCTTCTTTTAGGAATTAGCATGTTGGGTTTTCTTGTGCTGATATAAATTTTGTTT--GTGTTAACTGCATCAACGGTGATCATGAACTTCTGATGCAGGTTTTGATCATAATAGTGCAGCCACACTTGTCGGTCTATTTGCTGCTGGATGCGCATTAGGATCCTTCTTTGGTGGAGTAGTTGCAGACAAAATTTCTCGAATATACCCCCATACAGGACGTGTCATGTGTGCTCAATTTAGTTCTTTTATGGGCATCCCATTCTCATGGTTCCTTCTTCGAATTATCTCTCCGTCTATAAGCAGCTATTCCACATTTGCTGTGACTTTATTCATAATGGGCCTCACAATCAGCTGGTGTGCTACTGCTACAAATGGTCCCATGTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCATTTTCTTCTTTTGCTGCTCCAATTGTAGGGATTCTTGCTGAGAAAATGTACGGTTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691287" ref_strand="+" ref_description="SGN-E691287 [LH_Ea05L13]">
      <seq>ccgctcagattaagtctccattacacttatctcatctaacagactcatactcaaaattcaaacatgtatagatgctgatgttgcctggcatcaggcactccaacattgaagtagttgcttcggcattggcacactgacagggttacctgtttgtctatgtttttacatgtaaatcctgccatttttgaagtaagaagaaagctgcagaactttaacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="75485" stop="76298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75781" g_stop="75998" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="220" polyA_stop="229"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E691287" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75781" e_stop="75998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACG-GCAGATTAAGTCTCCATTACACTTATATCATCTAACAGA-TCATACTCAAAATTCAAACA--TATAGATGCTGCTGTTGCCTGCCATCATCAGGCACTCCAACATTGAAGTAGTTGCTTCGGCATTGGCACACTGACAGGGTTACCTGTTTGTCTATGTTTTTACATGTAAATCCTGCCATTTTTGAAGTAACAAGAAAACTGCAGAACTTTAACATA</genome_strand>
        <mrna_strand>CCGCTCAGATTAAGTCTCCATTACACTTATCTCATCTAACAGACTCATACTCAAAATTCAAACATGTATAGATGCTGATGTTGCCTG---GCATCAGGCACTCCAACATTGAAGTAGTTGCTTCGGCATTGGCACACTGACAGGGTTACCTGTTTGTCTATGTTTTTACATGTAAATCCTGCCATTTTTGAAGTAAGAAGAAAGCTGCAGAACTTTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695127" ref_strand="+" ref_description="SGN-E695127 [LH_Ea05L13](-)">
      <seq>cggcagattaagtctccattacacttatctcatctaacagatcatactcaaaattcaaacatgtatagatgctgatgttgcctggcatcaggcactccaacattgaagtagttgcttcggcattggcacactgacagggttacctgtttgtctatgtttttacatgtaaatcctgccattatggagtaagaagaaagctgcagaactttacataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="75482" stop="76298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75782" g_stop="75998" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="215" polyA_stop="229"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E695127" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75782" e_stop="75998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGATTAAGTCTCCATTACACTTATATCATCTAACAGATCATACTCAAAATTCAAACA--TATAGATGCTGCTGTTGCCTGCCATCATCAGGCACTCCAACATTGAAGTAGTTGCTTCGGCATTGGCACACTGACAGGGTTACCTGTTTGTCTATGTTTTTACATGTAAATCCTGCCATTTTTGAAGTAACAAGAAAACTGCAGAACTTTAACATA</genome_strand>
        <mrna_strand>CGGCAGATTAAGTCTCCATTACACTTATCTCATCTAACAGATCATACTCAAAATTCAAACATGTATAGATGCTGATGTTGCCTGGCATCA---GGCACTCCAACATTGAAGTAGTTGCTTCGGCATTGGCACACTGACAGGGTTACCTGTTTGTCTATGTTTTTACATGTAAATCCTGCCA-TTATGGAGTAAGAAGAAAGCTGCAGAACTTT-ACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371153" ref_strand="+" ref_description="SGN-E371153 [TUS-28-L19]">
      <seq>ggaacttcatacgctactctgctgaagttgtacgctaccggcccttaacactccggtgacgatgtacgatcaaaactattcaataccagcgcttaactttccagtgacggcgataatacctactgccaagattcgctactcttatcttgaagctatctggtcggagcttccacggcaatcatcacatcaatgtgatcaatttttcaccccaggtgatgtaaggccaagtgtgaaaatgaatcttgttaacagctaaaagagcaaattacaaggtcaagggaagtgcacaagtacatgtgatggggagtcaaaagaaggaattgttaccatgggaggccaaatggatattgtaaggtttaggaggacaacaagtgttttgtacgttgaattgatgattggtacaaaagtgaggatgacctgctttgcacacgtgcttctccttgtccttgctgctgttgtccagtgggtttgggattcatctgggttcccttaaaaattgaatccaagcgctggttcattcaagttttcaggatgcctctcaggtcctgatgtttacacaatgagggtatacatgcccaaattgatggataaagagatgtgataagtcatcttttctacacgttgtttccctaacaaccacggattaatttgcagtgcatctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="83502" stop="79226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83202" g_stop="83054" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83053" i_stop="82842" i_length="212">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82841" g_stop="82769" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="222" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82768" i_stop="82670" i_length="99">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82669" g_stop="82575" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="317" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82574" i_stop="80380" i_length="2195">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80379" g_stop="80334" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="363" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80333" i_stop="80245" i_length="89">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80244" g_stop="80201" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="407" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80200" i_stop="79782" i_length="419">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79781" g_stop="79535" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="654" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79534" i_stop="79325" i_length="210">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79324" g_stop="79313" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="666" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E371153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83202" e_stop="83054"/>
          <exon e_start="82841" e_stop="82769"/>
          <exon e_start="82669" e_stop="82575"/>
          <exon e_start="80379" e_stop="80334"/>
          <exon e_start="80244" e_stop="80201"/>
          <exon e_start="79781" e_stop="79535"/>
          <exon e_start="79324" e_stop="79313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTCATACGCTACTCTGCTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCGCTTAACTTTCCAGTGACGGCGATAATACCTACTGCCAAGATTCGCTACTCTTATCTTGGTAAATTCCTGAACTTGGAATTCTTGATTTAAGAAAAAAATCAAGAAATTGGTTTCTTTTTGAAGTTACTACATTGTTCATATGTTGAGGAATTAAAGAAATCGAATTTTTCAAGAATATGTTAGCATTGTAAATATCAAGAAAAATCAAAGAAAAGTTTTTTTAGCTTTTAGGGATGTGGGTAGCATTAAGAAAATTGCATCATTCTGCAGAAGCTATCTGGTCGGAGCTTCCACGGCAATCATCACATCAATGTGATCAATTTTTCACCCCAGGTGATGTAAGGTAAAGTTATCAAAATTTTTGAGAGGGTTAAGTCTCTTTATGATATTATCTCAATCAAATATATTAGTTACTGGCACAACCTGATGTTTCTCTTTTCAGGCCAAGTGTGAAAATGAATCTTGTTAACAGCTAAAAGAGCAAATTACAAGGTCAAGGGAAGTGCACAAGTACATGTGATGGGGAGTCAAAAGAAGGTAAACCATTCCTGCCCCTGTTCCTGACCTGAATAAGAGCTGAGTCTTTTCAGTTATCCTACTTTTCAAGATAATCTTAGAATGCATTCGTATTAATCATGATAGTATTAGAGATTACAATGCCTCTTTTTGTCTTGGTAAAATGGAGGAGCTGAATGACTTCTTCTGCTTTTTCTTCTTCCTTAAAAAAATCAATCTGTTTTACCTTGATTACAAGCATCAATACATTTACGCGAGTCCCCATCCACCCTAGAGGAAAGCATAGCTCTTGGTTGCAAATAATTCTTAAGATTCTCTTCACCATGAGAATGCATGTGTCAGAATGTCCTTGGTTAATGAAGATTTTTCTGAATCTCCTGACGAATCTTGACCTCTGCAATGTCTTGCTCTGAGTTTTTCACCTGGAGAAGTTCTCAAAATAACCTTTGATATAAGACCCGGTTAACATCATCAGCTACTTCAAATTTAACTCTATATTCATCTTCAAGGCTATTTTGTTTTTTTCTGTAGTACTTTTTAAAACTTAATACGTACATCACTATTAATAGATGATCCATCATGAGGATGGTGGAGGTTTTGTCTTCCGTGGAATTTCAATAAAACTTGTTTTCTGTGGAGCCTGATTAAACAGTTGGTTAGCACGGCACCTCGGGTGGTGGGTCTATGAGATTTTGGAATGAAATTTCCATATCATGGTGTTTCTTCTCAGCTCATAAGGTTAACTGATGCATGCAGCCACAACGGATTTCAATGCTTTTGGTGAAATTAGACATGACCTTCCACTTATTTTTATTGCTCTTTGTTTTAACTCAAAATGGCAGTCAAACATGTTGTCTGTTGAGTTGTAAACCTGTTGCTTGTTTGGCACTTCAAGTGGGTCTGTGAGATTTTGGAGAAAGTTCCATTTCATGGTGTTCCTTCTCTGTCTCATAAGGCTAACTGATGCTTGAAGCCATGACAGGTTCCTATGCTTTTGAGTTGATTCATGTTTTGAAAACTTTAGTTTCTTTCCCACCCCTCATCGAACTCCCTTTTTTCGTGATATTACAAAGGTAATCCCTGTTTTTTTATTCTTATTACTCACTCTCTCTGTTTTATACACAATGAAGATTTGGAGGTTTTCATTTATTGATGTTCAATCAAACATGTTGCCTCTTTCCTGTCAAGCTAAAGAACTGTTGCTTGGCACGGCACTTCATTTGGGTTTATGAGATTTTGGGAGAAGTTTCATTTTTTGGTCTTTCTTTTCTGTTCCCTAGGCATACCTTGCAGCCATGCTGGGTTTCCAAGCTTTTGAGCTGATCGTTTTTGGCATTGCAAAGTTCAATTTTTTTTTTGTCACTAAATCACTGTTTTGGTGAAACTATACGACTTCCTACTTTTCTTGTTCTTATTACTCTCTCCGGTATAACTCAAAAATCAATTTAACATGTTCTGTCTTGAGCTGAATTTTTTGCTTGGCGTGGCACCTCAGGTGGGAATATGAGATTTAAGAGAAAGTTTCATTTCATGATGCATCTTCTCTGTCTCATAAGGCTAACTGATGCTTGCAGCGATGACAGATTTCTAACCTTGTGAGCTGATTCGTGTCTTGGCTTAAAGTTCGGTTTCCTTTCCCCCTTCAGCAAACCATCCTTTTCGTGAAATTACACATGACCTTCCTCTTTTCTTGTTCTTATTACTCTCTCTGCTCCTTTTTAAAAAACCATGACGATTTGTAGGTTCTCTTCCTTGGAAGTTCAATAAAAATTTGTATGATTTCACAAGGGTTGTTGAGAACTTGGTTTCAAACAGCTTTGATGCAGGTACCTCCACGGTGTACTAATTTACTCTTTCAAAGTTTCAATATTTCTTTATAATTTTACTATGTATGTAGAATTATTTTGATTAGTTATTGTAGCTGAAGTTGAGTTGGAACATACATATTGGTGCCTCGATACTTATAGCCCAGCTTATGGAGACAATAAATGTGTCTGCTTCTTTTGTCTTCTGTTATGCTTCCTTTTCATCGCCATTTTAACTGTGGTTTCATATGCTTTCTTTACACCTGTGACATCAAAAAATTTTGTATGACTAATTGTGAATTTTTAGCGATGCAAAATTGGTACTGCCATTCAGATGATATGCATGCCTTCCCAGCAAGCTTTGGCCTTACACAAGAGGCTCTGAGCCCTATTTCTGATGTTTCTTTGTAGGAATTGTTACCATGGGAGGCCAAATGGATATTGTAAGGTTTAGGAGGTAAAGTTCTTTTGAGTTTTTGTAAGAAGTATCCATTAGGATAGGCATACAACTACTAACCTGGTCTTTGTTTTGGCCATTGTTTACAGGACAACAAGTGTTTTGTACGTTGAATTGATGATTGGTACAAAAGGTAATTTTGTATAAGCCTACATGAGTTGTTTGTTGTTTGCAAATAAGAGAATTTCTTGGGTTTTTGTTTTTTTGCAGTAATTGTTCATGATATATTTTACGACTAACCAGTTCGAAGGAAGCAAATGCACTCCGAACACTTCTAGTTTCCTCAAAATCAAACAAGTAGAAAGTAATGATTTACATATTTCTACTTCTAAAGTTGTACTTTGATATGATTGATCTTTTGGTTTGCTTATATAATTTTGAAGTCCAAGTATAGGGTCTCGCATTCTCCGAAAGATCTCTACTAAGAATTTCTCTTGCGCATCGTTTTGTGTCCTGCAAAATTGTTGATATTGAAAGGTTCATCTTTGATACACTAGCTAATTTAAGGATATTTCCTGTCTGGTTTCTTAGATTTTGTTCATTTGCATGCAGTGAGGATGACCTGCTTTGCACACGTGCTTCTCCTTGTCCTTGCTGCTGTTGTCCAGTGGGTTTGGGATTCATCTGGGTTCCCTTAAAAATTGAATCCAAGCGCTGGTTCATTCAAGTTTTCAGGATGCCTCTCAGGTCCTGATGTTTACACAATGAGGGTATACATGCCCAAATTGATGGATAAAGAGATGTGATAAGTCATCTTTTCTACACGTTGTTTCCCTAACAACCACGGATTAATTTGCAGGTCCTTCAGTATTTCATTATCCACTTATTTTAGTATGTTGTCAAGGAAACAGAAACCTAATCTTTGGTTAATATTCACTATACTGGATGCTTGTTTTTTGTACGATGTCTTTGTTTTCCTTGACCTCCGTAATGCAAATATCAATTCAAGATTTGTTTCCAAAGGACCAATAAATAAATTACTTAACAACATAGCTATGAGTTTTGGCAGTGCATCTGACAT</genome_strand>
        <mrna_strand>GGAACTTCATACGCTACTCTGCTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCGCTTAACTTTCCAGTGACGGCGATAATACCTACTGCCAAGATTCGCTACTCTTATCTTG....................................................................................................................................................................................................................AAGCTATCTGGTCGGAGCTTCCACGGCAATCATCACATCAATGTGATCAATTTTTCACCCCAGGTGATGTAAG...................................................................................................GCCAAGTGTGAAAATGAATCTTGTTAACAGCTAAAAGAGCAAATTACAAGGTCAAGGGAAGTGCACAAGTACATGTGATGGGGAGTCAAAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTTACCATGGGAGGCCAAATGGATATTGTAAGGTTTAGGAG.........................................................................................GACAACAAGTGTTTTGTACGTTGAATTGATGATTGGTACAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGATGACCTGCTTTGCACACGTGCTTCTCCTTGTCCTTGCTGCTGTTGTCCAGTGGGTTTGGGATTCATCTGGGTTCCCTTAAAAATTGAATCCAAGCGCTGGTTCATTCAAGTTTTCAGGATGCCTCTCAGGTCCTGATGTTTACACAATGAGGGTATACATGCCCAAATTGATGGATAAAGAGATGTGATAAGTCATCTTTTCTACACGTTGTTTCCCTAACAACCACGGATTAATTTGCAG..................................................................................................................................................................................................................TGCATCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271889" ref_strand="+" ref_description="SGN-E271889 [cLEM-8-F22]">
      <seq>ggaacttcatacgctactctgctgaagttgtacgctaccggcccttaacactccggtgacgatgtacgatcaaaactattcaataccagcgcttaactttccagtgacggcgataatacctactgccaagattcgctactcttatcttgaagctatctggtcggagcttccacggcaatcatcacatcaatgtgatcaatttttcaccccaggtgatgtaaggccaagtgtgaaaatgaatcttgttaacagctaaaagagcaaattacaaggtcaagggaagtgcacaagtacatgtgatggggagtcaaaagaaggaattgttaccatgggaggccaaatggatattgtaaggtttaggaggacaacaagtgttttgtacgttgaattgatgattggtacaaaagtgaggatgacctgctttgcacacgtgcttctccttgtccttgctgctgttgtccagtgggtttgggattcatctgggttcccttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="83502" stop="79393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83202" g_stop="83054" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83053" i_stop="82842" i_length="212">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82841" g_stop="82769" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="222" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82768" i_stop="82670" i_length="99">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82669" g_stop="82575" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="317" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82574" i_stop="80380" i_length="2195">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80379" g_stop="80334" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="363" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80333" i_stop="80245" i_length="89">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80244" g_stop="80201" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="407" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80200" i_stop="79782" i_length="419">
            <donor d_prob="0.649" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79781" g_stop="79693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="496" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E271889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83202" e_stop="83054"/>
          <exon e_start="82841" e_stop="82769"/>
          <exon e_start="82669" e_stop="82575"/>
          <exon e_start="80379" e_stop="80334"/>
          <exon e_start="80244" e_stop="80201"/>
          <exon e_start="79781" e_stop="79693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTCATACGCTACTCTGCTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCGCTTAACTTTCCAGTGACGGCGATAATACCTACTGCCAAGATTCGCTACTCTTATCTTGGTAAATTCCTGAACTTGGAATTCTTGATTTAAGAAAAAAATCAAGAAATTGGTTTCTTTTTGAAGTTACTACATTGTTCATATGTTGAGGAATTAAAGAAATCGAATTTTTCAAGAATATGTTAGCATTGTAAATATCAAGAAAAATCAAAGAAAAGTTTTTTTAGCTTTTAGGGATGTGGGTAGCATTAAGAAAATTGCATCATTCTGCAGAAGCTATCTGGTCGGAGCTTCCACGGCAATCATCACATCAATGTGATCAATTTTTCACCCCAGGTGATGTAAGGTAAAGTTATCAAAATTTTTGAGAGGGTTAAGTCTCTTTATGATATTATCTCAATCAAATATATTAGTTACTGGCACAACCTGATGTTTCTCTTTTCAGGCCAAGTGTGAAAATGAATCTTGTTAACAGCTAAAAGAGCAAATTACAAGGTCAAGGGAAGTGCACAAGTACATGTGATGGGGAGTCAAAAGAAGGTAAACCATTCCTGCCCCTGTTCCTGACCTGAATAAGAGCTGAGTCTTTTCAGTTATCCTACTTTTCAAGATAATCTTAGAATGCATTCGTATTAATCATGATAGTATTAGAGATTACAATGCCTCTTTTTGTCTTGGTAAAATGGAGGAGCTGAATGACTTCTTCTGCTTTTTCTTCTTCCTTAAAAAAATCAATCTGTTTTACCTTGATTACAAGCATCAATACATTTACGCGAGTCCCCATCCACCCTAGAGGAAAGCATAGCTCTTGGTTGCAAATAATTCTTAAGATTCTCTTCACCATGAGAATGCATGTGTCAGAATGTCCTTGGTTAATGAAGATTTTTCTGAATCTCCTGACGAATCTTGACCTCTGCAATGTCTTGCTCTGAGTTTTTCACCTGGAGAAGTTCTCAAAATAACCTTTGATATAAGACCCGGTTAACATCATCAGCTACTTCAAATTTAACTCTATATTCATCTTCAAGGCTATTTTGTTTTTTTCTGTAGTACTTTTTAAAACTTAATACGTACATCACTATTAATAGATGATCCATCATGAGGATGGTGGAGGTTTTGTCTTCCGTGGAATTTCAATAAAACTTGTTTTCTGTGGAGCCTGATTAAACAGTTGGTTAGCACGGCACCTCGGGTGGTGGGTCTATGAGATTTTGGAATGAAATTTCCATATCATGGTGTTTCTTCTCAGCTCATAAGGTTAACTGATGCATGCAGCCACAACGGATTTCAATGCTTTTGGTGAAATTAGACATGACCTTCCACTTATTTTTATTGCTCTTTGTTTTAACTCAAAATGGCAGTCAAACATGTTGTCTGTTGAGTTGTAAACCTGTTGCTTGTTTGGCACTTCAAGTGGGTCTGTGAGATTTTGGAGAAAGTTCCATTTCATGGTGTTCCTTCTCTGTCTCATAAGGCTAACTGATGCTTGAAGCCATGACAGGTTCCTATGCTTTTGAGTTGATTCATGTTTTGAAAACTTTAGTTTCTTTCCCACCCCTCATCGAACTCCCTTTTTTCGTGATATTACAAAGGTAATCCCTGTTTTTTTATTCTTATTACTCACTCTCTCTGTTTTATACACAATGAAGATTTGGAGGTTTTCATTTATTGATGTTCAATCAAACATGTTGCCTCTTTCCTGTCAAGCTAAAGAACTGTTGCTTGGCACGGCACTTCATTTGGGTTTATGAGATTTTGGGAGAAGTTTCATTTTTTGGTCTTTCTTTTCTGTTCCCTAGGCATACCTTGCAGCCATGCTGGGTTTCCAAGCTTTTGAGCTGATCGTTTTTGGCATTGCAAAGTTCAATTTTTTTTTTGTCACTAAATCACTGTTTTGGTGAAACTATACGACTTCCTACTTTTCTTGTTCTTATTACTCTCTCCGGTATAACTCAAAAATCAATTTAACATGTTCTGTCTTGAGCTGAATTTTTTGCTTGGCGTGGCACCTCAGGTGGGAATATGAGATTTAAGAGAAAGTTTCATTTCATGATGCATCTTCTCTGTCTCATAAGGCTAACTGATGCTTGCAGCGATGACAGATTTCTAACCTTGTGAGCTGATTCGTGTCTTGGCTTAAAGTTCGGTTTCCTTTCCCCCTTCAGCAAACCATCCTTTTCGTGAAATTACACATGACCTTCCTCTTTTCTTGTTCTTATTACTCTCTCTGCTCCTTTTTAAAAAACCATGACGATTTGTAGGTTCTCTTCCTTGGAAGTTCAATAAAAATTTGTATGATTTCACAAGGGTTGTTGAGAACTTGGTTTCAAACAGCTTTGATGCAGGTACCTCCACGGTGTACTAATTTACTCTTTCAAAGTTTCAATATTTCTTTATAATTTTACTATGTATGTAGAATTATTTTGATTAGTTATTGTAGCTGAAGTTGAGTTGGAACATACATATTGGTGCCTCGATACTTATAGCCCAGCTTATGGAGACAATAAATGTGTCTGCTTCTTTTGTCTTCTGTTATGCTTCCTTTTCATCGCCATTTTAACTGTGGTTTCATATGCTTTCTTTACACCTGTGACATCAAAAAATTTTGTATGACTAATTGTGAATTTTTAGCGATGCAAAATTGGTACTGCCATTCAGATGATATGCATGCCTTCCCAGCAAGCTTTGGCCTTACACAAGAGGCTCTGAGCCCTATTTCTGATGTTTCTTTGTAGGAATTGTTACCATGGGAGGCCAAATGGATATTGTAAGGTTTAGGAGGTAAAGTTCTTTTGAGTTTTTGTAAGAAGTATCCATTAGGATAGGCATACAACTACTAACCTGGTCTTTGTTTTGGCCATTGTTTACAGGACAACAAGTGTTTTGTACGTTGAATTGATGATTGGTACAAAAGGTAATTTTGTATAAGCCTACATGAGTTGTTTGTTGTTTGCAAATAAGAGAATTTCTTGGGTTTTTGTTTTTTTGCAGTAATTGTTCATGATATATTTTACGACTAACCAGTTCGAAGGAAGCAAATGCACTCCGAACACTTCTAGTTTCCTCAAAATCAAACAAGTAGAAAGTAATGATTTACATATTTCTACTTCTAAAGTTGTACTTTGATATGATTGATCTTTTGGTTTGCTTATATAATTTTGAAGTCCAAGTATAGGGTCTCGCATTCTCCGAAAGATCTCTACTAAGAATTTCTCTTGCGCATCGTTTTGTGTCCTGCAAAATTGTTGATATTGAAAGGTTCATCTTTGATACACTAGCTAATTTAAGGATATTTCCTGTCTGGTTTCTTAGATTTTGTTCATTTGCATGCAGTGAGGATGACCTGCTTTGCACACGTGCTTCTCCTTGTCCTTGCTGCTGTTGTCCAGTGGGTTTGGGATTCATCTGGGTTCCCTTAAAAA</genome_strand>
        <mrna_strand>GGAACTTCATACGCTACTCTGCTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCGCTTAACTTTCCAGTGACGGCGATAATACCTACTGCCAAGATTCGCTACTCTTATCTTG....................................................................................................................................................................................................................AAGCTATCTGGTCGGAGCTTCCACGGCAATCATCACATCAATGTGATCAATTTTTCACCCCAGGTGATGTAAG...................................................................................................GCCAAGTGTGAAAATGAATCTTGTTAACAGCTAAAAGAGCAAATTACAAGGTCAAGGGAAGTGCACAAGTACATGTGATGGGGAGTCAAAAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTTACCATGGGAGGCCAAATGGATATTGTAAGGTTTAGGAG.........................................................................................GACAACAAGTGTTTTGTACGTTGAATTGATGATTGGTACAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGATGACCTGCTTTGCACACGTGCTTCTCCTTGTCCTTGCTGCTGTTGTCCAGTGGGTTTGGGATTCATCTGGGTTCCCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18](-)">
      <seq>aaatatattctctctcatatttatcttttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatcttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtatttataggattttttagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="96877" stop="95684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96575" g_stop="95968" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96575" e_stop="95968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCATTCTCTCTTATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATGATTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTAATTAAGATATCTATAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTGTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAATAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTATGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</genome_strand>
        <mrna_strand>AAATATATTCTCTCTCATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATC--------G-CGAACAATTTTCTATTAGTTTGTTTTGTATTTATAG-GATTTTTTAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18](-)">
      <seq>tttcaaattgttaattctctctcccatttaattttttctctctcttatggttatcttttctgattttcctccaacattcaagttgcaaattttttttgccatatattttcgttgtttttttaatccaaaattgaatcaacaagaatccctttgattaaggtatctctagtctttatcctattttcagatttcttttctaattttatttttgtttaaatcttaaaaaaatgttgtttgtatttttcaatttccgttatgatttactctccaatgactgaatccaagagacttactagaggtattcatcttaatcaaccaatttctggtgatttttcatcctttaatttatttattacttaacaaatagtgtataatgtatgatccgctgctaaaatgagggaagaaagagggtaagaacatttacaagactcattggtgtgcaaaaccttcctcaaattcagaacgcaaatgtaaaatctttgtctactcgtgaggatgttgaaaaagacgacgaagatcgcgaacaattttctattagtttgttttgtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="96849" stop="95687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96549" g_stop="96025" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96549" e_stop="96025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATGATTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTAATTAAGATATCTATAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTGTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAATAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTATGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATA</genome_strand>
        <mrna_strand>TTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTCTCTCTCTTATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAAT-TTTTTTTGCCATATATTTTCGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTGATTAAGGTATCTCTAGTCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGACTGAATCCAAGAGACTTACTAGAGGTATTCATCTTAATCAACCAATTTCTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAACAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTAAGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAAAATCTTTGTCTACTCGTGAGGATGTTGAAAAAGACGACGAAGATCGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321053" ref_strand="+" ref_description="SGN-E321053 [cTOB-13-N14]">
      <seq>aatgttgaaacttctgtacagcttcggatatcctaaacttgcaatctccttcttcttcatctatctttgcgaaacctaattaactgagaaattaggtcgaaagaatgagtctttcaacaacaattacaacttggggatacacccatcatcccttttctgacgttggaaataaaggcagatccagatttcgctctccaggattcatgcctcatctgaagatgaaattcttcactaacccttcttctctttctgtctcagctcttcttacaaaggagcaagaaagcaagagcaagaaacaagcaatggagtttaaagaatacgttcttgaaaaggctgtttctgtcaacaaggctttggaatctgcagtctctatcaaggaaccggtcatgattcatgagtccatgaggtactctcttcttgctggtgggaaaagaattaaattgtaacaacagaattctcagtgattcctgatagtattaaacaatgaatatatgaatttttggtcaaccaatttgtatatttaaagtttaagaagtaagtacaaggcaaggacatgagtgtgtacatttaaagattcaaacttctaacatcttgaatgaaataatggcccatacacgtttctattcttcttctccttatgatactcttcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="97271" stop="99272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97571" g_stop="98001" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98002" i_stop="98749" i_length="748">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98750" g_stop="98972" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="654" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E321053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97571" e_stop="98001"/>
          <exon e_start="98750" e_stop="98972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAATCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCGAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTGTAACAACAGAATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTAAGTACAAGGCAAGGACATGAGTGTGTACATTTAAAGATTCAAACTTCTAACATCTTGAATGAAATAATGGCCCATACACGTTTCTATTCTTCTTCTCCTTATGATACTCTTCAACTG</genome_strand>
        <mrna_strand>AATGTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTAAATTGTAACAACAGAATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTAAGTACAAGGCAAGGACATGAGTGTGTACATTTAAAGATTCAAACTTCTAACATCTTGAATGAAATAATGGCCCATACACGTTTCTATTCTTCTTCTCCTTATGATACTCTTCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729140" ref_strand="+" ref_description="SGN-E729140 [LA20AD12]">
      <seq>gttgaaacttctgtacagcttcggatatcctaaacttgcaatctccttcttcttcatctatctttgcgaaacctaattaactgagaaattaggtcgaaagaatgagtctttcaacaacaattacaacttggggatacacccatcatcccttttctgacgttggaaataaaggcagatccagatttcgctctccaggattcatgcctcatctgaagatgaaattcttcactaacccttcttctctttctgtctcagctcttcttacaaaggagcaagaaagcaagagcaagaaacaagcaatggagtttaaagaatacgttcttgaaaaggctgtttctgtcaacaaggctttggaatctgcagtctctatcaaggaaccggtcatgattcatgagtccatgaggtactctcttcttgctggtgggaaaagaattagacccatgttgtgtatagctgcttgtgagcttgttggtggggttgagtccacagccatgccagcagcttgtgctgttgaaatgattcacaccatgtctttgattcatgatgaccttccttgtatggataatgatgatcttaaaagagggaaacctacaaatcacaagatttatggggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="97274" stop="98488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97574" g_stop="98188" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E729140" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97574" e_stop="98188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGG</genome_strand>
        <mrna_strand>GTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAAAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703520" ref_strand="+" ref_description="SGN-E703520 [FA21CH11]">
      <seq>aatgagtctttcacaacaattacaacttggggatacacccatcatcccttttctgacgttggaaataaaggcagatccagatttcgctctccaggattcatgcctcatctgaagatgaaattcttcactaacccttcttctctttctgtctcagctcttcttacaaaggagcaagaaagcaagagcaagaaacaagcaatggagtttaaagaatacgttcttgaaaaggctgtttctgtcaacaaggctttggaatctgcagtctctatcaaggaaccggtcatgattcatgagtccatgaggtactctcttcttgctggtgggaaaagaattagacccatgttgtgtatagctgcttgtgagcttgttggtggggttgagtccacagccatgccagcagcttgtgctgttgaaatgattcacaccatgtctttgattcatgatgaccttccttgtatggataatgatgatcttagaagagggaaacctacaaatcacaagatttatggggaggatgtggctgttttagcaggggatgcacttcttgcattagcctttgagcacattgctactcatacaaaaggggtttcttctgatagaattgtgagggtgattggtgagttggcgaagtgtattggggcagagggacttgtagctggtcaggttgtagatataatttcagaaggcatttctgatgttgatttgaagcatttagagttcattcatctgcacaagactgcagctttgttagaagggtcagtggtgctaggggctatattangaggtgcaccagatgaagatgtggaaaagctaagaaaatttgcaagatgtattggtttgttatttcaagttgtggatgatatccttgatgtcacaaagtcttctcaccaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="97374" stop="98869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97674" g_stop="98569" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E703520" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97674" e_stop="98569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGG</genome_strand>
        <mrna_strand>AATGAGTCTTTC-ACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTANGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATCCTTGATGTCACAAAGTCTTCTCACCAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710482" ref_strand="+" ref_description="SGN-E710482 [FA55CC08]">
      <seq>ctcttcttgctggtgggaaaagaattagacccatgttgtgtatagctgcttgtgagcttgttggtggggttgagtccacagccatgccagcagcttgtgctgttgaaatgattcacaccatgtctttgattcatgatgaccttccttgtatggataatgatgatcttagaagagggaaacctacaaatcacaagatttatggggaggatgtggctgttttagcaggggatgcacttcttgcattagcctttgagcacattgctactcatacaaaaggggtttcttctgatagaattgtgagggtgattggtgagttggcgaagtgtattggggcagagggacttgtagctggtcaggttgtagatataatttcagaaggcatttctgatgttgatttgaagcatttagagttcattcatctgcacaagactgcagctttgttagaagggtcagtggtgctaggggctatattaggaggtgcaccagatgaagatgtggaaaagctaagaaaatttgcaagatgtattggtttgttatttcaagttgtggatgatattcttgatgtcacaaagtcttctcagcaattggggaaaacagctgggaaggacttggttgctgataaggtaacttatcccaaactgataggtattgagaaatctagggagtttgctgaggagttaaacaaagaagcgaaagctcagcttgttggatttgatcaagagaaagcagctccattgtttgctcttgcaaattatattgcttacagagagaattaaatttgtacaacagaaattctccatgattcctgatagtattaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="97682" stop="99103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97982" g_stop="98803" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E710482" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97982" e_stop="98803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAATCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCGAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTGTAACAACAG-AATTCTCAGTGATTCCTGATAGTATTAAACAAT</genome_strand>
        <mrna_strand>CTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAATCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCGAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTTGTACAACAGAAATTCTCCATGATTCCTGATAGTATTAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586703" ref_strand="+" ref_description="SGN-E586703 [75537]">
      <seq>ctttgttagaagggtcagtggtgctaggggctatattaggaggggcaccagatgaagatgtggagaagctaaggaagtttgcaagatgtattgggttgttatttcaagttgtggatgatattcttgatgtcacaaagtcttctcagcaattggggaaaacagctgggaaggacttggttgctgataaggtaacttatcccaaactgataggtattgagaagtctagggagtttgctgaggagttaaacaaagaagcaaaagctcagcttgttggatttgatcaagagaaagcagctccattgtttgctcttgcaaattatattgcttacagagagaattaaattgtaacaacaggattctcagtgattcctgatagtattaaacaatgaatatatgaatttttggtcaaccaatttgtatatttaaagtttaagaagttagtacaaggcaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="98117" stop="99172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98417" g_stop="98880" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E586703" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98417" e_stop="98880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAATCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCGAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTGTAACAACAGAATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTAAGTACAAGGCAAGGACATGAGTGTG</genome_strand>
        <mrna_strand>CTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGGGCACCAGATGAAGATGTGGAGAAGCTAAGGAAGTTTGCAAGATGTATTGGGTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAGTCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCAAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTGTAACAACAGGATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTTAGTACAAGGCAAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424112" ref_strand="+" ref_description="SGN-E424112 [STM-43-E19]">
      <seq>ctgctttggcttgaatacttgttcctcagttagttaaatagtaaatcaccaaatcagggagtaatccacactttaaagagtcatgtctatgcgaaaaggagtaatccacaatcttgcaaaacttagtacaagaggtactccaaaaagatccagatctgcaggaacaaagttgcttctttcctcagaggaaacaacagaagctatattcctcccaaaagcaagatccttttgtaatagcacagatctttccaagaatgaatctgaagttatcaaacatgaaaacatatgtagagaatctggaaagacaacaagtgtctttgatttcaaaagttacatggttcaaaagatcaaatctgtcaatcaagccttagatgctgctgttccaatcagagagcctatcaagttccatgaagcaatgagatactcactcctttctgaaggcaagcgggtttgccctgtactctgcatagccgcctgtgagcttgttggtggccaagaatcaacagcaatgcctgctgcttgtggaatggagatgatgcatgctatgtggttgatgcacgacgaccttccctgcatggacaatgatgatttcccgtcgagaaagctgtcaaatcacaaggtttatgggcgaaacgtcactgttttagctggttattcccttgntgcctttgcatttcagcatatgacaacagccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="99262" stop="100557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99562" g_stop="100257" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E424112" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99562" e_stop="100257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTCGCTTGAATGCTTGTTCCTCAGTAAGTCAAATAGGAAATCACCAAATCAGGGAGTAATCCACACTTT-AAGAGTCATGTCTATGCTAAAAAGAGTAATCTACAATCTTGTGAAACTGAGTACAAGAGGCACTCCAAATAGATCCAGATCTGCAGGAACAAAGTTGCTTCTTTCTTCAGAGGAAACGGCAGAGGTTATATTCCGGCCAAAAGCAAGAGCCTTTTGTAATAGCACAGGTTTTTCCAAGAATGAAAGTGAAGTTATCAACCATGAAGACATACTCGGAGAAGCTGGAAAAACAACAAGTGTCTTTGATTTCAAAAGTTACATGGTTCAAAAGATCAAATCCATCAATCAAGCCTTAGATGCTGCTGTTCCAATCAGTGAGCCTATCAAGTTCCATGAAGCAATGAGATACTCACTCCTTTCTGAAGGCAAGCGGATTTGTCCTGTACTCTGTATAGCCGCCTGTGAGCTTGTTGGTGGCCAAGAATCAACAGCAATGCCTGCTGCTTGTGGAATGGAGATGATACATGCTATGTGTATGATGCACGACGACCTTCCCTGCATGGACAACGATGATCT-CCGTCGAGGAAAACTGTCACATCACAAGGTTTATGGCGAAAATGTCACTGTTTTAGCTGGTTATTCCCTTGTTGCCTTAGCATTTCAGCATATGACAACAGCCACT</genome_strand>
        <mrna_strand>CTGCTTTGGCTTGAATACTTGTTCCTCAGTTAGTTAAATAGTAAATCACCAAATCAGGGAGTAATCCACACTTTAAAGAGTCATGTCTATGCGAAAAGGAGTAATCCACAATCTTGCAAAACTTAGTACAAGAGGTACTCCAAAAAGATCCAGATCTGCAGGAACAAAGTTGCTTCTTTCCTCAGAGGAAACAACAGAAGCTATATTCCTCCCAAAAGCAAGATCCTTTTGTAATAGCACAGATCTTTCCAAGAATGAATCTGAAGTTATCAAACATGAAAACATATGTAGAGAATCTGGAAAGACAACAAGTGTCTTTGATTTCAAAAGTTACATGGTTCAAAAGATCAAATCTGTCAATCAAGCCTTAGATGCTGCTGTTCCAATCAGAGAGCCTATCAAGTTCCATGAAGCAATGAGATACTCACTCCTTTCTGAAGGCAAGCGGGTTTGCCCTGTACTCTGCATAGCCGCCTGTGAGCTTGTTGGTGGCCAAGAATCAACAGCAATGCCTGCTGCTTGTGGAATGGAGATGATGCATGCTATGTGGTTGATGCACGACGACCTTCCCTGCATGGACAATGATGATTTCCCGTCGA-GAAAGCTGTCAAATCACAAGGTTTATGGGCGAAACGTCACTGTTTTAGCTGGTTATTCCCTTGNTGCCTTTGCATTTCAGCATATGACAACAGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747122" ref_strand="+" ref_description="SGN-E747122 [GI|14423350]">
      <seq>gatcaacaacaacctcattgaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatataccgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctataattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttcggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106777" stop="108466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107076" g_stop="107349" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="396" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108163" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="919" r_length="523" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="922" polyA_stop="950"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E747122" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107076" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTG</genome_strand>
        <mrna_strand>GATCAACAACAACCTCATTGAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACCGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTATAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725273" ref_strand="+" ref_description="SGN-E725273 [FC26CD12]">
      <seq>gcggccaatcggccgaattgagtatcaacaacacccttatataagtcttcttttttgaccgctagaaccaacaaactgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106772" stop="108341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107076" g_stop="107349" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="296" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="418" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108041" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="819" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E725273" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107076" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTA</genome_strand>
        <mrna_strand>TATCAACAACACCCTTATATAAGTCTTCTTTTTTGACCGCTAGAACCAACAAACTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727674" ref_strand="+" ref_description="SGN-E727674 [LA15BF03]">
      <seq>cgctaaaacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaatatcaataactacgtgctctagaattaaaaaaaaagtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106783" stop="108436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107080" g_stop="107349" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="392" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108136" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="886" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E727674" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107080" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACAT</genome_strand>
        <mrna_strand>CGCTAAAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAAT-ATCAATAACTACGTGCTCTAGAATT-AAAAAAAAAGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747351" ref_strand="+" ref_description="SGN-E747351 [GI|47104611]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106785" stop="108596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107085" g_stop="107349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108296" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="1043" r_length="656" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E747351" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1043</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107085" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAA</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393216" ref_strand="+" ref_description="SGN-E393216 [TUS-38-K17]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcangggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106785" stop="108199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107085" g_stop="107349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107899" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="646" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E393216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107085" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTAT</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCANGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393155" ref_strand="+" ref_description="SGN-E393155 [TUS-38-L17]">
      <seq>caacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106785" stop="108160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107085" g_stop="107349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="387" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107860" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="607" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E393155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107085" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTC</genome_strand>
        <mrna_strand>CAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730373" ref_strand="+" ref_description="SGN-E730373 [LA23DG01]">
      <seq>acgttcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctanagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctaaaataaaaaaaaaaagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106790" stop="108434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107086" g_stop="107349" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="386" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108134" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="880" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E730373" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107086" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAAC</genome_strand>
        <mrna_strand>ACGTTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTANAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAAAATAAAAAAAAAAAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293219" ref_strand="+" ref_description="SGN-E293219 [cLET-12-B19]">
      <seq>aacctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttattgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106786" stop="107990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107086" g_stop="107349" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="386" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107690" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="436" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E293219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107086" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTG</genome_strand>
        <mrna_strand>AACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTATTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699977" ref_strand="+" ref_description="SGN-E699977 [FA11DA11]">
      <seq>ctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106789" stop="108429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107089" g_stop="107349" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="383" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108128" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="871" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E699977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107089" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAA</genome_strand>
        <mrna_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699861" ref_strand="+" ref_description="SGN-E699861 [FA11BF11]">
      <seq>ctcatttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106789" stop="108414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107089" g_stop="107349" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="383" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108115" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="858" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E699861" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107089" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAG</genome_strand>
        <mrna_strand>CTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708863" ref_strand="+" ref_description="SGN-E708863 [FA36DH09]">
      <seq>catttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106791" stop="108427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107091" g_stop="107349" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="381" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108127" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="868" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E708863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107091" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAA</genome_strand>
        <mrna_strand>CATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744749" ref_strand="+" ref_description="SGN-E744749 [GI|8977960]">
      <seq>tttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccagaaaaagataaaaatgaaaaaattatttggtaatgaattcaaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106793" stop="108627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107093" g_stop="107349" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="379" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108328" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="1067" r_length="688" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1068" polyA_stop="1083"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E744749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1067</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107093" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAC</genome_strand>
        <mrna_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319026" ref_strand="+" ref_description="SGN-E319026 [cTOB-14-B3]">
      <seq>tttaagtcttcttttttgaccgctagaaccaacaaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacagtaagaaaactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106793" stop="108121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107093" g_stop="107358" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107359" i_stop="107437" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="388" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107821" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="569" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E319026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107093" e_stop="107358"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCG</genome_strand>
        <mrna_strand>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAA...............................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486870" ref_strand="+" ref_description="SGN-E486870 [cSTE-23-B21]">
      <seq>caactttcttgcaagtcttttgttttaccactagaaccaacaaatagttcatttcttcttcagcaatggccactgtttcctcagcctctgctgctcttagagctatttcttcttcctcatacaagctaccctctgccttccaaactacttctctttctcaaaagatccaatcttttaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaattgcagcaactcatcttccctttcagctattctacactttttacttgaaggggatccccgatctgccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106829" stop="108241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107119" g_stop="107349" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="288" r_length="243" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="410" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107941" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="709" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E486870" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107119" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTA------------AAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTG</genome_strand>
        <mrna_strand>AGTTCATTTCTTCTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAGCTATTTCTTCTTCCTCATACAAGCTACCCTCTGCCTTCCAAACTACTTCTCTTTCTCAAAAGATCCAATCTTTTAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGT-AAATTGCAGCAACTCATCTTCCCTTTC-AGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366633" ref_strand="+" ref_description="SGN-E366633 [cLPT-17-G3]">
      <seq>attcaagtcttcttttttgaccactagaaccaactaatagttcatttcttgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcctctgccttccaaactaaaaagatccaatcttttaaactcccaaaccctctcatttctcagactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaatactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106792" stop="108078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107119" g_stop="107349" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="269" r_length="231" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="391" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107778" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="529" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E366633" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107119" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCC</genome_strand>
        <mrna_strand>AGTTCATTTCTTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCCTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTCCCAAACCCTCTCATTTCTCAGACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAATA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367002" ref_strand="+" ref_description="SGN-E367002 [cLPT-6-H23]">
      <seq>tcaagtcttcttttttgaccactagaaccaactaatagttcatttcttgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcctctgccttccaaactaaaaagatccaatcttttaaactcccaaaccctctcatttctcagactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaatactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106796" stop="108034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107119" g_stop="107349" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="267" r_length="231" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="389" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="107734" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="483" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E367002" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107119" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="107734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATG</genome_strand>
        <mrna_strand>AGTTCATTTCTTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCCTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTCCCAAACCCTCTCATTTCTCAGACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAATA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603183" ref_strand="+" ref_description="SGN-E603183 [56267]">
      <seq>gttcatttcttcttcagcaatggccactgtttcctcagcctctgctgctcttagagctatttcttcttcctcatacaagctaccctctgccttccaaactacttctctttctcaaaagatccaatcttttaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacgactgaagctaaagcttgtgacgatgggggccgcactgaaaaattaccactaattaagtgggggtgttgatgtggcaattacaacttttgttggggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106829" stop="108384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107120" g_stop="107349" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="364" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108084" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="810" r_length="446" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E603183" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107120" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTA------------AAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGA-AGGGGCCGCACTGAAAAATTA-CACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCG</genome_strand>
        <mrna_strand>GTTCATTTCTTCTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAGCTATTTCTTCTTCCTCATACAAGCTACCCTCTGCCTTCCAAACTACTTCTCTTTCTCAAAAGATCCAATCTTTTAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACGACTGAAGCTAAAGCTTGTGACGATGGGGGCCGCACTGAAAAATTACCACTAATTAAGTGGGGGTGTTGATGTGGCAATTACAACTTTTGTTGGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708817" ref_strand="+" ref_description="SGN-E708817 [FA36DD08]">
      <seq>caaattgttcagcaatggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgcccacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttctgttggggtcgttctgaaataatcaataactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106825" stop="108406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107125" g_stop="107349" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="347" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108106" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="813" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E708817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107125" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTAC</genome_strand>
        <mrna_strand>CAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCCACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTCTGTTGGGGTCGTTCTGAAATAATCAATAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744720" ref_strand="+" ref_description="SGN-E744720 [GI|40643244]">
      <seq>atggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106839" stop="108342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107139" g_stop="107349" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="735" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E744720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107139" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</genome_strand>
        <mrna_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744721" ref_strand="+" ref_description="SGN-E744721 [GI|40643242]">
      <seq>atggccactgtttcctcagcctctgctgctcttagaaccatttcttcttcctcatccaagctatcttctgccttccaaactaaaaagatccaatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106839" stop="108342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107139" g_stop="107349" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108042" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="735" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E744721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107139" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</genome_strand>
        <mrna_strand>ATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451297" ref_strand="+" ref_description="SGN-E451297 [cSTS-12-G6]">
      <seq>ctaccctctgccttccaaattacttctctttctcaaaagatccaatctttaaaactccctaaccctctcatttctcaaactcataaacttactaccacctccactactgcttccagatcattttcctgcaagagccagaacagctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagctcaatgaacgtgaccgtggaagccctgcttatcttcgattgagccaaaagaatgtcaattcactcggagatcttgtcccctttagcaacaagctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaagatggggccgcactgaaaaatacactaattaagtgggggtgttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106918" stop="108358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107219" g_stop="107349" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="163" r_length="131" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="285" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108058" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="702" r_length="417" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E451297" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107219" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGT</genome_strand>
        <mrna_strand>TCAAAAGATCCAATCTTTAAAACTCCCTAACCCTCTCATTTCTCAAACTCATAAACTTACTACCACCTCCACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAACAGCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGCTCAATGAACGTGACCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGAATGTCAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAAGATGGGGCCGCACTGAAAAA-TACACTAATTAAGTGGGGGTGTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337262" ref_strand="+" ref_description="SGN-E337262 [cTOE-7-B17]">
      <seq>aaagatccaatgttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaactcagtgtctatgagatcaatgaacgtgatcggggaagccctgctgatcttcgattgagccaaaagactgtgaattcactcggagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106922" stop="107841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107222" g_stop="107349" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107541" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="232" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E337262" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107222" e_stop="107349"/>
          <exon e_start="107438" e_stop="107541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTT</genome_strand>
        <mrna_strand>AAAGATCCAATGTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTCAGTGTCTATGAGATCAATGAACGTGATCGGGGAAGCCCTGCTGATCTTCGATTGAGCCAAAAGACTGTGAATTCACTCGGAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744575" ref_strand="+" ref_description="SGN-E744575 [GI|924631]">
      <seq>caatcttttaaactacctaaccctctcatttctcagaatcataaacttactaccacctctactactgcttccagatcattttcctgcaagagccagagcacctcaacagattcaactaacactgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="106929" stop="108577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107229" g_stop="107349" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107438" g_stop="107559" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="243" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107641" g_stop="108279" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="882" r_length="639" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E744575" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107229" e_stop="107349"/>
          <exon e_start="107438" e_stop="107559"/>
          <exon e_start="107641" e_stop="108279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAAGTTAACTTCTTTATCACATTTTTTTTATCAAACACCTTATGTTCAATCTGTGAATACTCAAAAATTTTCTTGATTTCAGCTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGT</genome_strand>
        <mrna_strand>CAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA........................................................................................CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343223" ref_strand="+" ref_description="SGN-E343223 [cTOF-17-L12]">
      <seq>tgaagttcaagaacttagtgtctatgagatcaatgaacgtgatcgtggaagccctgcttatcttcgattgagccaaaagactgttaattcactcggagatcttgtcccctttagcaacaagctatatactgcagatctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaatacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtacatcaacgtccttttattttgcaatttttggtatgttatttgtcngtttgttgggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107139" stop="108493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107439" g_stop="107559" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107641" g_stop="108193" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="672" r_length="551" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="684"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E343223" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107439" e_stop="107559"/>
          <exon e_start="107641" e_stop="108193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAGGTAACTTTCTCTTTGCAATCAAGATACCAGAACCTAGAACGAGTCTTTTTAATTCGTATGCTGATTCTTGGTATGTTGCAGCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAA</genome_strand>
        <mrna_strand>TGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG.................................................................................CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAA-TACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGT-ACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCNGTTTGTTGGGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576062" ref_strand="+" ref_description="SGN-E576062 [59221]">
      <seq>gctatatactgcagacctaaagaagagaattggaataacagcaggactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctgtagaatttaaaaaaaagtaatatcattgtccttttattttgcaatttttggtatgttatttgctgtttgttggttaacctattttgtagtactttgtatgtatgccctattttctgaattgcatccctattgtgataaacaaaggggggggcccgggtacccaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107340" stop="108557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107640" g_stop="108241" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E576062" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107640" e_stop="108241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATG-CCTATTATCTGAATT</genome_strand>
        <mrna_strand>GCTATATACTGCAGACCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTGTAGAATT-TAAAAAAAAGTAATATCATTGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTG-CTGTTTGTT--G-----GTTAACCTATTTTG-TAGTACTTTGTATGTATGCCCTATTTTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398044" ref_strand="+" ref_description="SGN-E398044 [TUS-38-L17](-)">
      <seq>cagatttaaagaagagaattggaataacagcaggattctgcattttgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttttacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaattcattttccctttcaagttattttacactttttacttgaaggggatccccggtctgccttttgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttttgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107351" stop="108601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107651" g_stop="108301" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E398044" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107651" e_stop="108301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</genome_strand>
        <mrna_strand>CAGATTTAAAGAAGAGAATTGGAATAACAGCAGGATTCTGCATTTTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTTTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAATTCATTTTCCCTTTCAAGTTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCTTTTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTTTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734966" ref_strand="+" ref_description="SGN-E734966 [LB14AC09]">
      <seq>gcatgactctgcattctgatcaagcacgaagaagagaagaaaggagatcgctatgaagctgtttacagcttctacttcggcgattacggtcatatcgccgttcagggagcgtacttaacctatgaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagctattttacactttttacttgaaggggatccccggtctgccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacacctgaagctaaagcttgtgaggaaggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattatctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107380" stop="108539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107680" g_stop="108241" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="574"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E734966" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107680" e_stop="108241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATT</genome_strand>
        <mrna_strand>GCATGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E393347" ref_strand="+" ref_description="SGN-E393347 [TUS-38-K17](-)">
      <seq>agagaagaaaggagatcgctttgaagctgtttacagcttctacttcggcgattacggtcatatcgccgtttcagggagcgtacttaacctaggaagaaacttacctagccgtcaccggtggatccggcatatttgcaggggtttccggtcaagtgaaattgcagcaactcattttccctttcaagttattttacactttttacttgaaggggatccccggtttcccatctgaattgttgtgtacggcggttcctccgtcgccgacggtggagccaacccctgaagttaaagcttgtgaggaaggggccgcactgaaaaattccactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttttgaaataatcaataactacgtgctctagaattaaaaaaaaaagtaacatcaacgtccttttattttgcaatttttggtatgttatttgtcgttttgttgggtaaaagtttaactgttttgttagtactttgtatgtatgcctattttttgaattgtatccctatgtgatacgttccatctttattataaagtccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107412" stop="108601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107712" g_stop="108301" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E393347" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107712" e_stop="108301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCG-TTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</genome_strand>
        <mrna_strand>AGAGAAGAAAGGAGATCGCTTTGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTTCAGGGAGCGTACTTAACCTAGGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGTTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTTTCCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACCCCTGAAGTTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTCCACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTTTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTTTTTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E605918" ref_strand="+" ref_description="SGN-E605918 [21850]">
      <seq>gctgtttacagcttctacttcggcgattacggtcaaatcgccgttcagggatcgtacttaacctatgaagacagttacctcgccgtcaccggcggatccggcatatttgctggggtttccggtcaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctgtagaatttaaaaaaaagtaatatcattgtccttttatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107437" stop="108452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107737" g_stop="108129" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="428"/>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E605918" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107737" e_stop="108129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAA</genome_strand>
        <mrna_strand>GCTGTTTACAGCTTCTACTTCGGCGATTACGGTCAAATCGCCGTTCAGGGATCGTACTTAACCTATGAAGACAGTTACCTCGCCGTCACCGGCGGATCCGGCATATTTGCTGGGGTTTCCGGTCAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTGTAGAATTTAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557692" ref_strand="+" ref_description="SGN-E557692 [16530]">
      <seq>cgtcacggcggatccggcatatttgctggggggtttcncggtacaagtaaaattgcagcaactcatcttccctttcaagctattctacactttttacttgaaggggatccccgatctgccatctgagttgttgtgtacggcggttcctccgtcgccgacggtagagccaacacctgaagctaaagcttgtgaggatggggccgcactgaaaaattacactaattaagtgggggtgttgatgtgcaaatcacaacttttgttggggtcgttctgaataatcaataattatgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="+" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="107520" stop="108411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107820" g_stop="108112" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="+" ref_id="SGN-E557692" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107820" e_stop="108112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACCGGTGGATCCGGCATATTTGC--AGGGGTTTC-CGGT-CAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTC</genome_strand>
        <mrna_strand>CGTCA-CGGCGGATCCGGCATATTTGCTGGGGGGTTTCNCGGTACAAGTAAAATTGCAGCAACTCATCTTCCCTTTCAAGCTATTCTACACTTTTTACTTGAAGGGGATCCCCGATCTGCCATCTGAGTTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTAGAGCCAACACCTGAAGCTAAAGCTTGTGAGGATGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTG-AATAATCAATAATTATGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284224" ref_strand="+" ref_description="SGN-E284224 [cLER-16-G20]">
      <seq>tttttttttttttttataataaagatggaacgtatcacatagggatacaattcagataataggcatacatacaaagtactaacaaaacagttaaacttttacccaacaaaacgacaaataacataccaaaaattgcaaaataaaaggacgttgatgttacttttttttttaattctagagcacgtagttattgattatttcagaacgaccccaacaaaagttgtgatttgcacatcaacacccccacttaattagtgtaatttttcagtgcggccccttcctcacaagctttagcttcaggtgttggctccaccgtcggcgacggaggaaccgccgtacacaacaattcagatggcagaccggggatccccttcaagtaaaaagtgtaaaatagcttgaaagggaaaatgagttgctgcaatttcacttgaccggaaacccctgcaaatatgccggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="108577" stop="107532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108289" g_stop="107832" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E284224" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108289" e_stop="107832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250396" ref_strand="+" ref_description="SGN-E250396 [cLEG-6-B1]">
      <seq>gagggttgcggtgaggtcttggattcaagcccttcagagcatagtggtctcaatttcgatctctttggatatgaaatctcctttgtaagggagaactctatggttcaaatagttatcgaacaaatacgtccttgaattcattaccaaataattttttcatttttatctttttctggactttataataaagatggaacgtatcacatagggatacaattcagataataggcatacatacaaagtactaacaaaacagttaaacttttacccaacaaaacgacaaataacataccaaaaattgcaaaataaaaggacgttgatgttactttttttttttaattctagagcacgtagttattgattatttcagaacgaccccaacaaaagttgtgatttgcacatcaacacccccacttaattagtgtaatttttcagtgcggccccttcctcacaagctttagcttcaagtgttggctccaccgtcggcgacggaggaaccgccgtacacaacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0116F10-VDsZk/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0116F10.1" temp_strand="-" temp_description="C02HBa0116F10.1  AC226001.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0116F10 sequenced_by:kribb upload_account_name:korea">
        <position start="108755" stop="107641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108455" g_stop="107941" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0116F10.1" gen_strand="-" ref_id="SGN-E250396" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0116F10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108455" e_stop="107941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTAC-TTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTC</genome_strand>
        <mrna_strand>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAAGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>99</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5164" PGL_stop="7084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5164" e_stop="7084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="5164" e_stop="7084" e_length="1921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5164" stop="6037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5164" stop="5993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5589" stop="6013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5590" stop="6092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5943" stop="6672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6519" stop="7084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTCTCTCCTTTTTTCAGAGAAATGAAAGTGCCCTTTTCCACTAATGATAACGTAAGTTCTAAGCCATTGGTTAACAGCAACAACAGCTTTACTTTTCCAGCCGCTACCAACGGTTCTAATTTGTGCTACGAACCTAAGTCAGTGCTCGAGCTCCGTCGTAGCCCAAGTCCTATAGTTGATAAGCAGATTATAACAACGAATCCTGATTTGTCTGCTCTTTGTGGTGGTGAAGATCCTCTTCAATTAGGAGATCATGTTCTGAGTAACTTTGAAGATTGGGATTCTTTGATGAGAGAACTTGGCTTGCACGACGATTCTGCTTCGCTTTCAAAAACGAATCCTCTCACCCACAGCGAATCGCTGACTCAGTTCCATAATCTCTCCGAGTTTTCAGCTGAATCGAATCAGTTTCCTAGTCCTGATTTTTCTTTCTCAGACACTAATTTCCCTCAGCAGTTTCCGACGGTGAATCAGGCAAGTTTCATCAACGCCCTTGATCTCTCCGGGGATATCCACCAGAATTGGAGCGTAGGATTTGATTATGTGGATGAACTCATTCGTTTTGCTGAGTGTTTCGAAACAAACGCTTTCCAACTCGCACATGTGATACTGGCACGCCTCAATCAACGGCTCAGATCCGCAGCAGGAAAACCTCTCCAACGAGCTGCCTTTTACTTCAAGGAAGCACTTCAAGCGCAGCTCGCCGGATCAGCTCGGCAAACTCGTTCTTCAAGTTCCTCCGACGTAATTCAAACGATTAAATCTTATAAAATATTGTCAAATATTTCTCCGATCCCTATGTTCTCTAGCTTCACGGCGAATCAGGCCGTGCTTGAGGCAGTTGACGGCTCCATGCTAGTCCACGTCATCGATTTCGACATCGGACTTGGTGGTCACTGGGCTTCCTTCATGAAAGAGTTAGCCGACAAAGCCGAGTGCCGTAAAGCCAACGCGCCGATCCTTAGAATTACGGCTCTAGTTCCTGAAGAGTACGCTGTGGAATCAAGGTTAATTAGAGAAAATTTAACCCAATTTGCTCGTGAACTCAATATCGGTTTCGAAATTGATTTTGTCCTAATTCGTACATTCGAATTGTTATCCTTCAAAGCGATAAAGTTCATGGAGGGAGAGAAGACAGCGGTGCTTTTATCTCCCGCTATCTTCCGACGGGTCGGGTCAGGGTTTGTAAATGAACTCCGTCGAATATCCCCTAACGTGGTGGTACACGTGGACAGCGAAGGACTTATGGGTTACGGTGCAATGTCTTTCCGGCAGACAGTAATCGACGGGCTGGAATTTTACTCTACACTACTGGAATCACTGGAGGCAGCAAATATCGGTGGTGGAAATTGCGGGGATTGGATGAGAAAAATAGAGAATTTCGTGCTGTTTCCTAAGATAGTTGATATGATCGGAGCAGTAGGGCGGCGTGGAGGTGGAGGATCGTGGAGGGATGCCATGGTGGATGCCGGATTCCGGCCGGTTGGACTAAGCCAGTTTGCCGATTTTCAAGCAGATTGTTTATTGGGTAGGGTACAGGTAAGAGGATTCCACGTGGCAAAGAGACAAGCAGAGATGTTGCTTTGCTGGCATGACAGGGCCCTAGTAGCCACGTCAGCTTGGAGGTGTTAATAATAATAAATCTAACCCTAAACTAGTTTTAATTTAATAATAGCAGTGATTTGGATCTTTAGCTGTATGGTTCAGTTTTAGGGGTTGGCTTAGCATATATAACAATAGATTAAGAAGAAGAAAAAAAGAAAAAACTCAAAAGAAAGTTGCATGGTCCTTTTCTTTTCTTTCTCCAATTGTGTTGGTAACTATCTATCTTTTGTAATTTTGTAGCTTAATTTGGAGTCTCAAGGTTGGTGTCTCTAATTAGTGGATAATTGCAATTTGTAACTCATTCACTATTTAA</gDNA_template>
            <first_frame> Q  F  S  P  F  F  R  E  M  K  V  P  F  S  T  N  D  N  V  S  S  K  P  L  V  N  S  N  N  S  F  T  F  P  A  A  T  N  G  S  N  L  C  Y  E  P  K  S  V  L  E  L  R  R  S  P  S  P  I  V  D  K  Q  I  I  T  T  N  P  D  L  S  A  L  C  G  G  E  D  P  L  Q  L  G  D  H  V  L  S  N  F  E  D  W  D  S  L  M  R  E  L  G  L  H  D  D  S  A  S  L  S  K  T  N  P  L  T  H  S  E  S  L  T  Q  F  H  N  L  S  E  F  S  A  E  S  N  Q  F  P  S  P  D  F  S  F  S  D  T  N  F  P  Q  Q  F  P  T  V  N  Q  A  S  F  I  N  A  L  D  L  S  G  D  I  H  Q  N  W  S  V  G  F  D  Y  V  D  E  L  I  R  F  A  E  C  F  E  T  N  A  F  Q  L  A  H  V  I  L  A  R  L  N  Q  R  L  R  S  A  A  G  K  P  L  Q  R  A  A  F  Y  F  K  E  A  L  Q  A  Q  L  A  G  S  A  R  Q  T  R  S  S  S  S  S  D  V  I  Q  T  I  K  S  Y  K  I  L  S  N  I  S  P  I  P  M  F  S  S  F  T  A  N  Q  A  V  L  E  A  V  D  G  S  M  L  V  H  V  I  D  F  D  I  G  L  G  G  H  W  A  S  F  M  K  E  L  A  D  K  A  E  C  R  K  A  N  A  P  I  L  R  I  T  A  L  V  P  E  E  Y  A  V  E  S  R  L  I  R  E  N  L  T  Q  F  A  R  E  L  N  I  G  F  E  I  D  F  V  L  I  R  T  F  E  L  L  S  F  K  A  I  K  F  M  E  G  E  K  T  A  V  L  L  S  P  A  I  F  R  R  V  G  S  G  F  V  N  E  L  R  R  I  S  P  N  V  V  V  H  V  D  S  E  G  L  M  G  Y  G  A  M  S  F  R  Q  T  V  I  D  G  L  E  F  Y  S  T  L  L  E  S  L  E  A  A  N  I  G  G  G  N  C  G  D  W  M  R  K  I  E  N  F  V  L  F  P  K  I  V  D  M  I  G  A  V  G  R  R  G  G  G  G  S  W  R  D  A  M  V  D  A  G  F  R  P  V  G  L  S  Q  F  A  D  F  Q  A  D  C  L  L  G  R  V  Q  V  R  G  F  H  V  A  K  R  Q  A  E  M  L  L  C  W  H  D  R  A  L  V  A  T  S  A  W  R  C  *  *  *  *  I  *  P  *  T  S  F  N  L  I  I  A  V  I  W  I  F  S  C  M  V  Q  F  *  G  L  A  *  H  I  *  Q  *  I  K  K  K  K  K  R  K  N  S  K  E  S  C  M  V  L  F  F  S  F  S  N  C  V  G  N  Y  L  S  F  V  I  L  *  L  N  L  E  S  Q  G  W  C  L  *  L  V  D  N  C  N  L  *  L  I  H  Y  L  </first_frame>
            <second_frame>  N  S  L  L  F  S  E  K  *  K  C  P  F  P  L  M  I  T  *  V  L  S  H  W  L  T  A  T  T  A  L  L  F  Q  P  L  P  T  V  L  I  C  A  T  N  L  S  Q  C  S  S  S  V  V  A  Q  V  L  *  L  I  S  R  L  *  Q  R  I  L  I  C  L  L  F  V  V  V  K  I  L  F  N  *  E  I  M  F  *  V  T  L  K  I  G  I  L  *  *  E  N  L  A  C  T  T  I  L  L  R  F  Q  K  R  I  L  S  P  T  A  N  R  *  L  S  S  I  I  S  P  S  F  Q  L  N  R  I  S  F  L  V  L  I  F  L  S  Q  T  L  I  S  L  S  S  F  R  R  *  I  R  Q  V  S  S  T  P  L  I  S  P  G  I  S  T  R  I  G  A  *  D  L  I  M  W  M  N  S  F  V  L  L  S  V  S  K  Q  T  L  S  N  S  H  M  *  Y  W  H  A  S  I  N  G  S  D  P  Q  Q  E  N  L  S  N  E  L  P  F  T  S  R  K  H  F  K  R  S  S  P  D  Q  L  G  K  L  V  L  Q  V  P  P  T  *  F  K  R  L  N  L  I  K  Y  C  Q  I  F  L  R  S  L  C  S  L  A  S  R  R  I  R  P  C  L  R  Q  L  T  A  P  C  *  S  T  S  S  I  S  T  S  D  L  V  V  T  G  L  P  S  *  K  S  *  P  T  K  P  S  A  V  K  P  T  R  R  S  L  E  L  R  L  *  F  L  K  S  T  L  W  N  Q  G  *  L  E  K  I  *  P  N  L  L  V  N  S  I  S  V  S  K  L  I  L  S  *  F  V  H  S  N  C  Y  P  S  K  R  *  S  S  W  R  E  R  R  Q  R  C  F  Y  L  P  L  S  S  D  G  S  G  Q  G  L  *  M  N  S  V  E  Y  P  L  T  W  W  Y  T  W  T  A  K  D  L  W  V  T  V  Q  C  L  S  G  R  Q  *  S  T  G  W  N  F  T  L  H  Y  W  N  H  W  R  Q  Q  I  S  V  V  E  I  A  G  I  G  *  E  K  *  R  I  S  C  C  F  L  R  *  L  I  *  S  E  Q  *  G  G  V  E  V  E  D  R  G  G  M  P  W  W  M  P  D  S  G  R  L  D  *  A  S  L  P  I  F  K  Q  I  V  Y  W  V  G  Y  R  *  E  D  S  T  W  Q  R  D  K  Q  R  C  C  F  A  G  M  T  G  P  *  *  P  R  Q  L  G  G  V  N  N  N  K  S  N  P  K  L  V  L  I  *  *  *  Q  *  F  G  S  L  A  V  W  F  S  F  R  G  W  L  S  I  Y  N  N  R  L  R  R  R  K  K  E  K  T  Q  K  K  V  A  W  S  F  S  F  L  S  P  I  V  L  V  T  I  Y  L  L  *  F  C  S  L  I  W  S  L  K  V  G  V  S  N  *  W  I  I  A  I  C  N  S  F  T  I  * </second_frame>
            <third_frame>   I  L  S  F  F  Q  R  N  E  S  A  L  F  H  *  *  *  R  K  F  *  A  I  G  *  Q  Q  Q  Q  L  Y  F  S  S  R  Y  Q  R  F  *  F  V  L  R  T  *  V  S  A  R  A  P  S  *  P  K  S  Y  S  *  *  A  D  Y  N  N  E  S  *  F  V  C  S  L  W  W  *  R  S  S  S  I  R  R  S  C  S  E  *  L  *  R  L  G  F  F  D  E  R  T  W  L  A  R  R  F  C  F  A  F  K  N  E  S  S  H  P  Q  R  I  A  D  S  V  P  *  S  L  R  V  F  S  *  I  E  S  V  S  *  S  *  F  F  F  L  R  H  *  F  P  S  A  V  S  D  G  E  S  G  K  F  H  Q  R  P  *  S  L  R  G  Y  P  P  E  L  E  R  R  I  *  L  C  G  *  T  H  S  F  C  *  V  F  R  N  K  R  F  P  T  R  T  C  D  T  G  T  P  Q  S  T  A  Q  I  R  S  R  K  T  S  P  T  S  C  L  L  L  Q  G  S  T  S  S  A  A  R  R  I  S  S  A  N  S  F  F  K  F  L  R  R  N  S  N  D  *  I  L  *  N  I  V  K  Y  F  S  D  P  Y  V  L  *  L  H  G  E  S  G  R  A  *  G  S  *  R  L  H  A  S  P  R  H  R  F  R  H  R  T  W  W  S  L  G  F  L  H  E  R  V  S  R  Q  S  R  V  P  *  S  Q  R  A  D  P  *  N  Y  G  S  S  S  *  R  V  R  C  G  I  K  V  N  *  R  K  F  N  P  I  C  S  *  T  Q  Y  R  F  R  N  *  F  C  P  N  S  Y  I  R  I  V  I  L  Q  S  D  K  V  H  G  G  R  E  D  S  G  A  F  I  S  R  Y  L  P  T  G  R  V  R  V  C  K  *  T  P  S  N  I  P  *  R  G  G  T  R  G  Q  R  R  T  Y  G  L  R  C  N  V  F  P  A  D  S  N  R  R  A  G  I  L  L  Y  T  T  G  I  T  G  G  S  K  Y  R  W  W  K  L  R  G  L  D  E  K  N  R  E  F  R  A  V  S  *  D  S  *  Y  D  R  S  S  R  A  A  W  R  W  R  I  V  E  G  C  H  G  G  C  R  I  P  A  G  W  T  K  P  V  C  R  F  S  S  R  L  F  I  G  *  G  T  G  K  R  I  P  R  G  K  E  T  S  R  D  V  A  L  L  A  *  Q  G  P  S  S  H  V  S  L  E  V  L  I  I  I  N  L  T  L  N  *  F  *  F  N  N  S  S  D  L  D  L  *  L  Y  G  S  V  L  G  V  G  L  A  Y  I  T  I  D  *  E  E  E  K  K  K  K  L  K  R  K  L  H  G  P  F  L  F  F  L  Q  L  C  W  *  L  S  I  F  C  N  F  V  A  *  F  G  V  S  R  L  V  S  L  I  S  G  *  L  Q  F  V  T  H  S  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5164" stop="6798"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1632</number_coding_nucleotides>
                  <number_encoded_amino_acids>544</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSPFFREMKVPFSTNDNVSSKPLVNSNNSFTFPAATNGSNLCYEPKSVLELRRSPSPIVDKQIITTNPDLSALCGGEDPLQLGDHVLSNFEDWDSLMRELGLHDDSASLSKTNPLTHSESLTQFHNLSEFSAESNQFPSPDFSFSDTNFPQQFPTVNQASFINALDLSGDIHQNWSVGFDYVDELIRFAECFETNAFQLAHVILARLNQRLRSAAGKPLQRAAFYFKEALQAQLAGSARQTRSSSSSDVIQTIKSYKILSNISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAECRKANAPILRITALVPEEYAVESRLIRENLTQFARELNIGFEIDFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRVGSGFVNELRRISPNVVVHVDSEGLMGYGAMSFRQTVIDGLEFYSTLLESLEAANIGGGNCGDWMRKIENFVLFPKIVDMIGAVGRRGGGGSWRDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17502" PGL_stop="7360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17502" e_stop="17367"/>
            <exon e_start="13164" e_stop="13041"/>
            <exon e_start="12905" e_stop="12858"/>
            <exon e_start="12771" e_stop="12685"/>
            <exon e_start="12569" e_stop="12480"/>
            <exon e_start="12352" e_stop="12192"/>
            <exon e_start="12107" e_stop="12053"/>
            <exon e_start="11919" e_stop="11871"/>
            <exon e_start="11788" e_stop="11583"/>
            <exon e_start="10772" e_stop="10695"/>
            <exon e_start="8174" e_stop="8049"/>
            <exon e_start="7766" e_stop="7360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.884" e_score="0.992"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.631" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="0.985"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.769" e_score="1.000"/>
          <exon-only e_score="0.813"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="17502" e_stop="17367" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17366" i_stop="13165" i_length="4202"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="13164" e_stop="13041" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.884">
            <gDNA_intron_boundary i_start="13040" i_stop="12906" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12905" e_stop="12858" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="12857" i_stop="12772" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="12771" e_stop="12685" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.631">
            <gDNA_intron_boundary i_start="12684" i_stop="12570" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12569" e_stop="12480" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12479" i_stop="12353" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12352" e_stop="12192" e_length="161"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12191" i_stop="12108" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12107" e_stop="12053" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.992">
            <gDNA_intron_boundary i_start="12052" i_stop="11920" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11919" e_stop="11871" e_length="49"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11870" i_stop="11789" i_length="82"/>
          </intron>
          <exon e_serial="9" e_score="0.985">
            <gDNA_exon_boundary e_start="11788" e_stop="11583" e_length="206"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="11582" i_stop="10773" i_length="810"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="10772" e_stop="10695" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="10694" i_stop="8175" i_length="2520"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="8174" e_stop="8049" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.769">
            <gDNA_intron_boundary i_start="8048" i_stop="7767" i_length="282"/>
          </intron>
          <exon e_serial="12" e_score="0.813">
            <gDNA_exon_boundary e_start="7766" e_stop="7360" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17367"/>
              <exon start="13164" stop="13041"/>
              <exon start="12905" stop="12858"/>
              <exon start="12771" stop="12685"/>
              <exon start="12569" stop="12556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12560" stop="12480"/>
              <exon start="12352" stop="12192"/>
              <exon start="12107" stop="12053"/>
              <exon start="11919" stop="11871"/>
              <exon start="11788" stop="11583"/>
              <exon start="10772" stop="10695"/>
              <exon start="8174" stop="8049"/>
              <exon start="7766" stop="7360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12261" stop="12192"/>
              <exon start="12107" stop="12053"/>
              <exon start="11919" stop="11871"/>
              <exon start="11788" stop="11583"/>
              <exon start="10772" stop="10695"/>
              <exon start="8174" stop="8049"/>
              <exon start="7766" stop="7684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12261" stop="12192"/>
              <exon start="12107" stop="12053"/>
              <exon start="11919" stop="11871"/>
              <exon start="11788" stop="11583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTTTCTTTATGGCTGCTCTTTGTTTAGGATAATTTTTTTCTTCTTAAATCTCTTTGGGGGTGGGATAACAAACTTAACTTTTTGGAAAATCCGACTTGGAACCTTCTTGTTCCACCTCAGATTCACTACACAG : CCTTTCGCTGAGCAAGCCATTTTTGGATTATTCCCGTGGATACCTGCATATACAATTGATTGACCCAATGGGAGCTGGGGAAGAGAGCACTCCTACAAAGACTTCAAAGCCTCCTTTAACTCAG : GAGACACCAACCGCACCTTCATATCCTGATTGGTCAAGCTCTATGCAG : GCTTATTATAGTGCTGGAGCTACTCCTCCTTTTTTTGCCTCACCTGTTGCTTCTCCTGCTCCCCACCCATACATGTGGGGAGGTCAG : CATCCTCTTATGCCTCCTTATGGGACTCCAGTTCCATATCCAGCTTTATATCCTCCTGCCGGAGTTTATGCTCATCCTAACATTGCCACG : CCGGCTCCAAATTCTGTGCCGGCAAATCCTGAAGCAGATGGGAAGGGGCCTGAAGGAAAGGATCGGAATTCAAGTAAAAAGTTAAAGGTCTGTTCTGGTGGTAAGGCAGGCGACAATGGGAAAGTTACTTCAGGTTCCGGAAATGATGGTGCCACACAAAG : TGATGAAAGCAGAAGTGAAGGTACATCAGATACAAATGATGAAAATGATAACAAT : GAATTTGCTGCAAACAAGAAGGGAAGCTTTGATCAAATGCTTGCAGATG : GAGCCAGTGCACAGAATAATCCTGCGAAAGAGAATCACCCGACTTCTATACATGGAAATCCTGTCACCATGCCTGCAACTAACCTAAATATTGGAATGGACGTGTGGAATGCATCAGCTGCCGGTCCTGGAGCGATCAAAATACAGCAAAATGCAACTGGTCCAGTTATAGGACATGAAGGAAGGATGAATGATCAGTGGATTCAG : GAGGAACGTGAACTTAAAAGGCAAAAGAGAAAGCAATCTAATAGGGAGTCAGCTAGGAGGTCGAGGCTCCGCAAGCAG : GCAGAGTGTGAAGAGCTACAACGTAGAGTAGAAGCTTTGAGCCATGAGAATCATTCACTCAAAGATGAGCTCCAACGGCTCTCTGAGGAATGTGAGAAGCTTACCTCGGAGAATAATTTAATTAAG : GAAGAGTTAACGCTACTTTGTGGACCAGACGTTGTGTCTAAGCTGGAGAGAAACGATAATGTCACACGTATTCAATCTAATGTTGAAGAAGCTAGTTAAGGAGAAGTGGAAAAGCCAGGACTGAGTAGGTGATTTTTGTTACAAAGTGCTCACAGATCATTGCCTTTTTGGTGCAGTGTTTGTTGTCCTACTAACCTATACCCTCCTTTAACTCCCTTTCTGAGTATGACTGTAACATATATTTCTTATGATTCTAACCCCAGTGTTAAAAGAGTCTTGAGTCTGTTTAACTTAGTCTTTAAATTAACTTCAGTAGCTCAGAAAGTCTTCAAGTGAATGTTAACGAGGCACCCAACCACATGGGTTGTGGTACCCTGGTGGAATTGCTTTAGCTTTAACTAGATGTC</gDNA_template>
            <first_frame> L  F  S  L  W  L  L  F  V  *  D  N  F  F  L  L  K  S  L  W  G  W  D  N  K  L  N  F  L  E  N  P  T  W  N  L  L  V  P  P  Q  I  H  Y  T   : A  F  R  *  A  S  H  F  W  I  I  P  V  D  T  C  I  Y  N  *  L  T  Q  W  E  L  G  K  R  A  L  L  Q  R  L  Q  S  L  L  *  L  R :   R  H  Q  P  H  L  H  I  L  I  G  Q  A  L  C  R :   L  I  I  V  L  E  L  L  L  L  F  L  P  H  L  L  L  L  L  L  P  T  H  T  C  G  E  V  S :   I  L  L  C  L  L  M  G  L  Q  F  H  I  Q  L  Y  I  L  L  P  E  F  M  L  I  L  T  L  P  R :   R  L  Q  I  L  C  R  Q  I  L  K  Q  M  G  R  G  L  K  E  R  I  G  I  Q  V  K  S  *  R  S  V  L  V  V  R  Q  A  T  M  G  K  L  L  Q  V  P  E  M  M  V  P  H  K   : V  M  K  A  E  V  K  V  H  Q  I  Q  M  M  K  M  I  T  M :   N  L  L  Q  T  R  R  E  A  L  I  K  C  L  Q  M  :  E  P  V  H  R  I  I  L  R  K  R  I  T  R  L  L  Y  M  E  I  L  S  P  C  L  Q  L  T  *  I  L  E  W  T  C  G  M  H  Q  L  P  V  L  E  R  S  K  Y  S  K  M  Q  L  V  Q  L  *  D  M  K  E  G  *  M  I  S  G  F  R :   R  N  V  N  L  K  G  K  R  E  S  N  L  I  G  S  Q  L  G  G  R  G  S  A  S  R :   Q  S  V  K  S  Y  N  V  E  *  K  L  *  A  M  R  I  I  H  S  K  M  S  S  N  G  S  L  R  N  V  R  S  L  P  R  R  I  I  *  L  R :   K  S  *  R  Y  F  V  D  Q  T  L  C  L  S  W  R  E  T  I  M  S  H  V  F  N  L  M  L  K  K  L  V  K  E  K  W  K  S  Q  D  *  V  G  D  F  C  Y  K  V  L  T  D  H  C  L  F  G  A  V  F  V  V  L  L  T  Y  T  L  L  *  L  P  F  *  V  *  L  *  H  I  F  L  M  I  L  T  P  V  L  K  E  S  *  V  C  L  T  *  S  L  N  *  L  Q  *  L  R  K  S  S  S  E  C  *  R  G  T  Q  P  H  G  L  W  Y  P  G  G  I  A  L  A  L  T  R  C  </first_frame>
            <second_frame>  C  F  L  Y  G  C  S  L  F  R  I  I  F  F  F  L  N  L  F  G  G  G  I  T  N  L  T  F  W  K  I  R  L  G  T  F  L  F  H  L  R  F  T  T  Q  :  P  F  A  E  Q  A  I  F  G  L  F  P  W  I  P  A  Y  T  I  D  *  P  N  G  S  W  G  R  E  H  S  Y  K  D  F  K  A  S  F  N  S   : G  D  T  N  R  T  F  I  S  *  L  V  K  L  Y  A   : G  L  L  *  C  W  S  Y  S  S  F  F  C  L  T  C  C  F  S  C  S  P  P  I  H  V  G  R  S   : A  S  S  Y  A  S  L  W  D  S  S  S  I  S  S  F  I  S  S  C  R  S  L  C  S  S  *  H  C  H   : A  G  S  K  F  C  A  G  K  S  *  S  R  W  E  G  A  *  R  K  G  S  E  F  K  *  K  V  K  G  L  F  W  W  *  G  R  R  Q  W  E  S  Y  F  R  F  R  K  *  W  C  H  T  K  :  *  *  K  Q  K  *  R  Y  I  R  Y  K  *  *  K  *  *  Q   : *  I  C  C  K  Q  E  G  K  L  *  S  N  A  C  R  W :   S  Q  C  T  E  *  S  C  E  R  E  S  P  D  F  Y  T  W  K  S  C  H  H  A  C  N  *  P  K  Y  W  N  G  R  V  E  C  I  S  C  R  S  W  S  D  Q  N  T  A  K  C  N  W  S  S  Y  R  T  *  R  K  D  E  *  S  V  D  S   : G  G  T  *  T  *  K  A  K  E  K  A  I  *  *  G  V  S  *  E  V  E  A  P  Q  A   : G  R  V  *  R  A  T  T  *  S  R  S  F  E  P  *  E  S  F  T  Q  R  *  A  P  T  A  L  *  G  M  *  E  A  Y  L  G  E  *  F  N  *   : G  R  V  N  A  T  L  W  T  R  R  C  V  *  A  G  E  K  R  *  C  H  T  Y  S  I  *  C  *  R  S  *  L  R  R  S  G  K  A  R  T  E  *  V  I  F  V  T  K  C  S  Q  I  I  A  F  L  V  Q  C  L  L  S  Y  *  P  I  P  S  F  N  S  L  S  E  Y  D  C  N  I  Y  F  L  *  F  *  P  Q  C  *  K  S  L  E  S  V  *  L  S  L  *  I  N  F  S  S  S  E  S  L  Q  V  N  V  N  E  A  P  N  H  M  G  C  G  T  L  V  E  L  L  *  L  *  L  D  V </second_frame>
            <third_frame>   V  F  F  M  A  A  L  C  L  G  *  F  F  S  S  *  I  S  L  G  V  G  *  Q  T  *  L  F  G  K  S  D  L  E  P  S  C  S  T  S  D  S  L  H  S :   L  S  L  S  K  P  F  L  D  Y  S  R  G  Y  L  H  I  Q  L  I  D  P  M  G  A  G  E  E  S  T  P  T  K  T  S  K  P  P  L  T  Q  :  E  T  P  T  A  P  S  Y  P  D  W  S  S  S  M  Q  :  A  Y  Y  S  A  G  A  T  P  P  F  F  A  S  P  V  A  S  P  A  P  H  P  Y  M  W  G  G  Q  :  H  P  L  M  P  P  Y  G  T  P  V  P  Y  P  A  L  Y  P  P  A  G  V  Y  A  H  P  N  I  A  T  :  P  A  P  N  S  V  P  A  N  P  E  A  D  G  K  G  P  E  G  K  D  R  N  S  S  K  K  L  K  V  C  S  G  G  K  A  G  D  N  G  K  V  T  S  G  S  G  N  D  G  A  T  Q  S :   D  E  S  R  S  E  G  T  S  D  T  N  D  E  N  D  N  N  :  E  F  A  A  N  K  K  G  S  F  D  Q  M  L  A  D   : G  A  S  A  Q  N  N  P  A  K  E  N  H  P  T  S  I  H  G  N  P  V  T  M  P  A  T  N  L  N  I  G  M  D  V  W  N  A  S  A  A  G  P  G  A  I  K  I  Q  Q  N  A  T  G  P  V  I  G  H  E  G  R  M  N  D  Q  W  I  Q  :  E  E  R  E  L  K  R  Q  K  R  K  Q  S  N  R  E  S  A  R  R  S  R  L  R  K  Q  :  A  E  C  E  E  L  Q  R  R  V  E  A  L  S  H  E  N  H  S  L  K  D  E  L  Q  R  L  S  E  E  C  E  K  L  T  S  E  N  N  L  I  K  :  E  E  L  T  L  L  C  G  P  D  V  V  S  K  L  E  R  N  D  N  V  T  R  I  Q  S  N  V  E  E  A  S  *  G  E  V  E  K  P  G  L  S  R  *  F  L  L  Q  S  A  H  R  S  L  P  F  W  C  S  V  C  C  P  T  N  L  Y  P  P  L  T  P  F  L  S  M  T  V  T  Y  I  S  Y  D  S  N  P  S  V  K  R  V  L  S  L  F  N  L  V  F  K  L  T  S  V  A  Q  K  V  F  K  *  M  L  T  R  H  P  T  T  W  V  V  V  P  W  W  N  C  F  S  F  N  *  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17422" stop="17367"/>
                    <exon start="13164" stop="13041"/>
                    <exon start="12905" stop="12858"/>
                    <exon start="12771" stop="12685"/>
                    <exon start="12569" stop="12480"/>
                    <exon start="12352" stop="12192"/>
                    <exon start="12107" stop="12053"/>
                    <exon start="11919" stop="11871"/>
                    <exon start="11788" stop="11583"/>
                    <exon start="10772" stop="10695"/>
                    <exon start="8174" stop="8049"/>
                    <exon start="7766" stop="7668"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGKSDLEPSCSTSDSLHSLSLSKPFLDYSRGYLHIQLIDPMGAGEESTPTKTSKPPLTQETPTAPSYPDWSSSMQAYYSAGATPPFFASPVASPAPHPYMWGGQHPLMPPYGTPVPYPALYPPAGVYAHPNIATPAPNSVPANPEADGKGPEGKDRNSSKKLKVCSGGKAGDNGKVTSGSGNDGATQSDESRSEGTSDTNDENDNNEFAANKKGSFDQMLADGASAQNNPAKENHPTSIHGNPVTMPATNLNIGMDVWNASAAGPGAIKIQQNATGPVIGHEGRMNDQWIQEERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSENNLIKEELTLLCGPDVVSKLERNDNVTRIQSNVEEAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7634" stop="7431"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLQSAHRSLPFWCSVCCPTNLYPPLTPFLSMTVTYISYDSNPSVKRVLSLFNLVFKLTSVAQKVFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38141" PGL_stop="43560"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38141" e_stop="38342"/>
            <exon e_start="38473" e_stop="38795"/>
            <exon e_start="39768" e_stop="40220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38141" e_stop="38342" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.939">
            <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38473" e_stop="38795" e_length="323"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="39768" e_stop="40220" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38141" stop="38342"/>
              <exon start="38473" stop="38666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38143" stop="38342"/>
              <exon start="38473" stop="38770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38148" stop="38342"/>
              <exon start="38473" stop="38791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38148" stop="38342"/>
              <exon start="38473" stop="38609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38244" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="38795"/>
              <exon start="39768" stop="40043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38795"/>
              <exon start="39768" stop="40043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38521" stop="38795"/>
              <exon start="39768" stop="40220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423698" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38529" stop="38795"/>
              <exon start="39768" stop="40034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255941" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACCTTAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG : GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG : GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGATCCCATAATTCTATTTGTAGATAAGTAACCCCACTATATAACGTACTAAATTATGTAAATATATCTTTTTTTTTCCTTGCTTTTTTTCTAGACTAGTGTGGTAATTAGAGTTACTAGTATTTGACTAGCTAGCTAGCAAGTTGCAAGATGGAATATAACTTGGATTTTTATTTTAAA</gDNA_template>
            <first_frame> A  P  *  S  S  L  H  L  Y  N  F  F  F  P  S  K  *  I  N  K  S  L  L  H  F  T  F  T  P  Q  K  I  N  K  N  I  N  T  M  N  H  Q  V  I  E  D  D  N  M  V  L  I  S  Q  Y  Y  P  D  I  Y  T  Q  L  V  P  Q  Q   : G  E  S  K  P  R  R  R  R  K  K  N  K  L  G  E  G  S  G  N  D  Q  M  M  M  M  R  K  R  K  L  S  E  E  Q  V  N  L  L  E  Q  S  F  G  D  E  H  K  L  E  S  E  R  K  D  K  L  A  A  E  L  G  L  D  P  R  Q  V  A  V  W  F  Q  N  R  R  A  R  W  K  S  K  K  L  E  E  E  Y  S  K  L  K  S  E  H  D  N  N  V  V  E  K  C  R  L  E  T  E  :  V  L  K  L  K  E  Q  L  N  E  S  E  K  E  I  Q  R  L  L  L  E  R  C  D  G  V  S  S  N  Y  T  S  P  S  A  S  S  F  S  M  E  A  P  F  L  G  E  F  G  M  D  G  L  D  N  V  F  Y  A  Q  E  N  N  Y  V  Q  G  L  D  W  V  N  L  Y  I  *  Y  K  *  L  *  T  S  S  C  D  *  F  L  I  L  G  S  H  N  S  I  C  R  *  V  T  P  L  Y  N  V  L  N  Y  V  N  I  S  F  F  F  L  A  F  F  L  D  *  C  G  N  *  S  Y  *  Y  L  T  S  *  L  A  S  C  K  M  E  Y  N  L  D  F  Y  F  K </first_frame>
            <second_frame>  H  L  S  L  H  S  I  Y  I  I  F  F  S  L  Q  N  K  *  I  K  V  F  S  I  S  L  L  H  H  K  K  *  I  K  I  *  T  P  *  T  I  R  L  *  K  M  I  I  W  Y  L  F  P  S  T  I  L  I  F  T  P  N  L  Y  H  N  K  :  E  S  Q  S  R  G  E  D  V  R  R  T  N  *  E  K  G  V  G  M  I  K  *  *  *  *  G  R  G  S  *  V  K  N  K  L  I  Y  L  S  K  V  L  G  T  S  T  N  *  S  Q  R  E  R  T  S  *  P  L  S  *  G  S  T  L  D  K  L  R  C  G  S  K  T  G  G  L  V  G  R  A  R  S  *  R  R  N  I  Q  S  *  N  L  N  M  T  I  M  L  L  R  S  V  V  W  K  L  R :   C  *  S  *  K  N  N  *  M  N  Q  R  R  R  Y  K  G  Y  Y  *  N  D  V  M  G  Y  R  V  I  T  Q  V  Q  V  L  H  L  S  Q  W  K  H  H  F  *  G  N  L  E  W  M  D  W  T  M  C  F  M  H  K  R  I  I  M  F  K  D  *  I  G  *  T  Y  I  F  D  I  N  N  Y  K  H  H  H  V  I  N  F  *  F  *  D  P  I  I  L  F  V  D  K  *  P  H  Y  I  T  Y  *  I  M  *  I  Y  L  F  F  S  L  L  F  F  *  T  S  V  V  I  R  V  T  S  I  *  L  A  S  *  Q  V  A  R  W  N  I  T  W  I  F  I  L   </second_frame>
            <third_frame>   T  L  V  F  T  P  S  I  *  F  F  F  P  F  K  I  N  K  *  K  S  S  P  F  H  F  Y  T  T  K  N  K  *  K  Y  K  H  H  E  P  S  G  Y  R  R  *  *  Y  G  T  Y  F  P  V  L  S  *  Y  L  H  P  T  C  T  T  T  R :   R  V  K  A  A  E  K  T  *  E  E  Q  I  R  R  R  E  W  E  *  S  N  D  D  D  E  E  E  E  V  K  *  R  T  S  *  F  T  *  A  K  F  W  G  R  A  Q  T  R  V  R  E  K  G  Q  A  S  R  *  A  R  A  R  P  *  T  S  C  G  V  V  P  K  Q  E  G  S  L  E  E  Q  E  A  R  G  G  I  F  K  V  E  I  *  T  *  Q  *  C  C  *  E  V  S  S  G  N  *   : G  V  E  V  E  R  T  I  E  *  I  R  E  G  D  T  K  A  I  I  R  T  M  *  W  G  I  E  *  L  H  K  S  K  C  F  I  F  L  N  G  S  T  I  S  R  G  I  W  N  G  W  I  G  Q  C  V  L  C  T  R  E  *  L  C  S  R  I  R  L  G  E  L  I  Y  L  I  *  I  I  I  N  I  I  M  *  L  I  S  N  F  R  I  P  *  F  Y  L  *  I  S  N  P  T  I  *  R  T  K  L  C  K  Y  I  F  F  F  P  C  F  F  S  R  L  V  W  *  L  E  L  L  V  F  D  *  L  A  S  K  L  Q  D  G  I  *  L  G  F  L  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38192" stop="38342"/>
                    <exon start="38473" stop="38795"/>
                    <exon start="39768" stop="39995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKSLLHFTFTPQKINKNINTMNHQVIEDDNMVLISQYYPDIYTQLVPQQGESKPRRRRKKNKLGEGSGNDQMMMMRKRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKLKEQLNESEKEIQRLLLERCDGVSSNYTSPSASSFSMEAPFLGEFGMDGLDNVFYAQENNYVQGLDWVNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38141" e_stop="38342"/>
            <exon e_start="38473" e_stop="38795"/>
            <exon e_start="39768" e_stop="40210"/>
            <exon e_start="43514" e_stop="43560"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.787"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38141" e_stop="38342" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.939">
            <gDNA_intron_boundary i_start="38343" i_stop="38472" i_length="130"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38473" e_stop="38795" e_length="323"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38796" i_stop="39767" i_length="972"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="39768" e_stop="40210" e_length="443"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40211" i_stop="43513" i_length="3303"/>
          </intron>
          <exon e_serial="4" e_score="0.787">
            <gDNA_exon_boundary e_start="43514" e_stop="43560" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38141" stop="38342"/>
              <exon start="38473" stop="38666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38143" stop="38342"/>
              <exon start="38473" stop="38770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38147" stop="38342"/>
              <exon start="38473" stop="38551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38148" stop="38342"/>
              <exon start="38473" stop="38791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38148" stop="38342"/>
              <exon start="38473" stop="38609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38244" stop="38342"/>
              <exon start="38473" stop="38795"/>
              <exon start="39768" stop="39814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38502" stop="38795"/>
              <exon start="39768" stop="40043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38795"/>
              <exon start="39768" stop="40043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38519" stop="38795"/>
              <exon start="39768" stop="39909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38529" stop="38795"/>
              <exon start="39768" stop="40034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38698" stop="38795"/>
              <exon start="39768" stop="40210"/>
              <exon start="43514" stop="43560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACCTTAGTCTTCACTCCATCTATATAATTTTTTTTTCCCTTCAAAATAAATAAATAAAAGTCTTCTCCATTTCACTTTTACACCACAAAAAATAAATAAAAATATAAACACCATGAACCATCAGGTTATAGAAGATGATAATATGGTACTTATTTCCCAGTACTATCCTGATATTTACACCCAACTTGTACCACAACAAG : GAGAGTCAAAGCCGCGGAGAAGACGTAAGAAGAACAAATTAGGAGAAGGGAGTGGGAATGATCAAATGATGATGATGAGGAAGAGGAAGTTAAGTGAAGAACAAGTTAATTTACTTGAGCAAAGTTTTGGGGACGAGCACAAACTAGAGTCAGAGAGAAAGGACAAGCTAGCCGCTGAGCTAGGGCTCGACCCTAGACAAGTTGCGGTGTGGTTCCAAAACAGGAGGGCTCGTTGGAAGAGCAAGAAGCTAGAGGAGGAATATTCAAAGTTGAAATCTGAACATGACAATAATGTTGTTGAGAAGTGTCGTCTGGAAACTGAG : GTGTTGAAGTTGAAAGAACAATTGAATGAATCAGAGAAGGAGATACAAAGGCTATTATTAGAACGATGTGATGGGGTATCGAGTAATTACACAAGTCCAAGTGCTTCATCTTTCTCAATGGAAGCACCATTTCTAGGGGAATTTGGAATGGATGGATTGGACAATGTGTTTTATGCACAAGAGAATAATTATGTTCAAGGATTAGATTGGGTGAACTTATATATTTGATATAAATAATTATAAACATCATCATGTGATTAATTTCTAATTTTAGGATCCCATAATTCTATTTGTAGATAAGTAACCCCACTATATAACGTACTAAATTATGTAAATATATCTTTTTTTTTCCTTGCTTTTTTTCTAGACTAGTGTGGTAATTAGAGTTACTAGTATTTGACTAGCTAGCTAGCAAGTTGCAAGATGGAATATAACTTGGATTT : TTTTTTATTAAAAAAAAGAAGCAAATAAAAAAAAATTAAACATAAGA</gDNA_template>
            <first_frame> A  P  *  S  S  L  H  L  Y  N  F  F  F  P  S  K  *  I  N  K  S  L  L  H  F  T  F  T  P  Q  K  I  N  K  N  I  N  T  M  N  H  Q  V  I  E  D  D  N  M  V  L  I  S  Q  Y  Y  P  D  I  Y  T  Q  L  V  P  Q  Q   : G  E  S  K  P  R  R  R  R  K  K  N  K  L  G  E  G  S  G  N  D  Q  M  M  M  M  R  K  R  K  L  S  E  E  Q  V  N  L  L  E  Q  S  F  G  D  E  H  K  L  E  S  E  R  K  D  K  L  A  A  E  L  G  L  D  P  R  Q  V  A  V  W  F  Q  N  R  R  A  R  W  K  S  K  K  L  E  E  E  Y  S  K  L  K  S  E  H  D  N  N  V  V  E  K  C  R  L  E  T  E  :  V  L  K  L  K  E  Q  L  N  E  S  E  K  E  I  Q  R  L  L  L  E  R  C  D  G  V  S  S  N  Y  T  S  P  S  A  S  S  F  S  M  E  A  P  F  L  G  E  F  G  M  D  G  L  D  N  V  F  Y  A  Q  E  N  N  Y  V  Q  G  L  D  W  V  N  L  Y  I  *  Y  K  *  L  *  T  S  S  C  D  *  F  L  I  L  G  S  H  N  S  I  C  R  *  V  T  P  L  Y  N  V  L  N  Y  V  N  I  S  F  F  F  L  A  F  F  L  D  *  C  G  N  *  S  Y  *  Y  L  T  S  *  L  A  S  C  K  M  E  Y  N  L  D  F :   F  L  L  K  K  R  S  K  *  K  K  I  K  H  K  </first_frame>
            <second_frame>  H  L  S  L  H  S  I  Y  I  I  F  F  S  L  Q  N  K  *  I  K  V  F  S  I  S  L  L  H  H  K  K  *  I  K  I  *  T  P  *  T  I  R  L  *  K  M  I  I  W  Y  L  F  P  S  T  I  L  I  F  T  P  N  L  Y  H  N  K  :  E  S  Q  S  R  G  E  D  V  R  R  T  N  *  E  K  G  V  G  M  I  K  *  *  *  *  G  R  G  S  *  V  K  N  K  L  I  Y  L  S  K  V  L  G  T  S  T  N  *  S  Q  R  E  R  T  S  *  P  L  S  *  G  S  T  L  D  K  L  R  C  G  S  K  T  G  G  L  V  G  R  A  R  S  *  R  R  N  I  Q  S  *  N  L  N  M  T  I  M  L  L  R  S  V  V  W  K  L  R :   C  *  S  *  K  N  N  *  M  N  Q  R  R  R  Y  K  G  Y  Y  *  N  D  V  M  G  Y  R  V  I  T  Q  V  Q  V  L  H  L  S  Q  W  K  H  H  F  *  G  N  L  E  W  M  D  W  T  M  C  F  M  H  K  R  I  I  M  F  K  D  *  I  G  *  T  Y  I  F  D  I  N  N  Y  K  H  H  H  V  I  N  F  *  F  *  D  P  I  I  L  F  V  D  K  *  P  H  Y  I  T  Y  *  I  M  *  I  Y  L  F  F  S  L  L  F  F  *  T  S  V  V  I  R  V  T  S  I  *  L  A  S  *  Q  V  A  R  W  N  I  T  W  I   : F  F  Y  *  K  K  E  A  N  K  K  K  L  N  I  R </second_frame>
            <third_frame>   T  L  V  F  T  P  S  I  *  F  F  F  P  F  K  I  N  K  *  K  S  S  P  F  H  F  Y  T  T  K  N  K  *  K  Y  K  H  H  E  P  S  G  Y  R  R  *  *  Y  G  T  Y  F  P  V  L  S  *  Y  L  H  P  T  C  T  T  T  R :   R  V  K  A  A  E  K  T  *  E  E  Q  I  R  R  R  E  W  E  *  S  N  D  D  D  E  E  E  E  V  K  *  R  T  S  *  F  T  *  A  K  F  W  G  R  A  Q  T  R  V  R  E  K  G  Q  A  S  R  *  A  R  A  R  P  *  T  S  C  G  V  V  P  K  Q  E  G  S  L  E  E  Q  E  A  R  G  G  I  F  K  V  E  I  *  T  *  Q  *  C  C  *  E  V  S  S  G  N  *   : G  V  E  V  E  R  T  I  E  *  I  R  E  G  D  T  K  A  I  I  R  T  M  *  W  G  I  E  *  L  H  K  S  K  C  F  I  F  L  N  G  S  T  I  S  R  G  I  W  N  G  W  I  G  Q  C  V  L  C  T  R  E  *  L  C  S  R  I  R  L  G  E  L  I  Y  L  I  *  I  I  I  N  I  I  M  *  L  I  S  N  F  R  I  P  *  F  Y  L  *  I  S  N  P  T  I  *  R  T  K  L  C  K  Y  I  F  F  F  P  C  F  F  S  R  L  V  W  *  L  E  L  L  V  F  D  *  L  A  S  K  L  Q  D  G  I  *  L  G  F  :  F  F  I  K  K  K  K  Q  I  K  K  N  *  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38192" stop="38342"/>
                    <exon start="38473" stop="38795"/>
                    <exon start="39768" stop="39995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKSLLHFTFTPQKINKNINTMNHQVIEDDNMVLISQYYPDIYTQLVPQQGESKPRRRRKKNKLGEGSGNDQMMMMRKRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKLKEQLNESEKEIQRLLLERCDGVSSNYTSPSASSFSMEAPFLGEFGMDGLDNVFYAQENNYVQGLDWVNLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47883" PGL_stop="56172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47883" e_stop="48041"/>
            <exon e_start="48119" e_stop="48182"/>
            <exon e_start="48275" e_stop="48414"/>
            <exon e_start="49553" e_stop="49837"/>
            <exon e_start="49939" e_stop="50061"/>
            <exon e_start="50161" e_stop="50466"/>
            <exon e_start="51723" e_stop="51809"/>
            <exon e_start="52254" e_stop="52321"/>
            <exon e_start="52776" e_stop="52842"/>
            <exon e_start="53462" e_stop="53596"/>
            <exon e_start="53694" e_stop="53774"/>
            <exon e_start="54445" e_stop="54499"/>
            <exon e_start="54694" e_stop="54798"/>
            <exon e_start="54873" e_stop="54944"/>
            <exon e_start="55366" e_stop="55490"/>
            <exon e_start="55730" e_stop="56172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.870" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.770" e_score="1.000"/>
          <exon-intron don_prob="0.753" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.778" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.248" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.564" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="47883" e_stop="48041" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.870">
            <gDNA_intron_boundary i_start="48042" i_stop="48118" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48119" e_stop="48182" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.923">
            <gDNA_intron_boundary i_start="48183" i_stop="48274" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48275" e_stop="48414" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.770">
            <gDNA_intron_boundary i_start="48415" i_stop="49552" i_length="1138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49553" e_stop="49837" e_length="285"/>
          </exon>
          <intron i_serial="4" don_prob="0.753" acc_prob="0.974">
            <gDNA_intron_boundary i_start="49838" i_stop="49938" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49939" e_stop="50061" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.995">
            <gDNA_intron_boundary i_start="50062" i_stop="50160" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50161" e_stop="50466" e_length="306"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="50467" i_stop="51722" i_length="1256"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51723" e_stop="51809" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.778">
            <gDNA_intron_boundary i_start="51810" i_stop="52253" i_length="444"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52254" e_stop="52321" e_length="68"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="52322" i_stop="52775" i_length="454"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52776" e_stop="52842" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.887">
            <gDNA_intron_boundary i_start="52843" i_stop="53461" i_length="619"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53462" e_stop="53596" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.916" acc_prob="0.943">
            <gDNA_intron_boundary i_start="53597" i_stop="53693" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53694" e_stop="53774" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.893" acc_prob="0.993">
            <gDNA_intron_boundary i_start="53775" i_stop="54444" i_length="670"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="54445" e_stop="54499" e_length="55"/>
          </exon>
          <intron i_serial="12" don_prob="0.957" acc_prob="0.248">
            <gDNA_intron_boundary i_start="54500" i_stop="54693" i_length="194"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="54694" e_stop="54798" e_length="105"/>
          </exon>
          <intron i_serial="13" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54799" i_stop="54872" i_length="74"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="54873" e_stop="54944" e_length="72"/>
          </exon>
          <intron i_serial="14" don_prob="0.564" acc_prob="0.922">
            <gDNA_intron_boundary i_start="54945" i_stop="55365" i_length="421"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="55366" e_stop="55490" e_length="125"/>
          </exon>
          <intron i_serial="15" don_prob="0.958" acc_prob="0.990">
            <gDNA_intron_boundary i_start="55491" i_stop="55729" i_length="239"/>
          </intron>
          <exon e_serial="16" e_score="0.984">
            <gDNA_exon_boundary e_start="55730" e_stop="56172" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47883" stop="48041"/>
              <exon start="48119" stop="48182"/>
              <exon start="48275" stop="48414"/>
              <exon start="49553" stop="49837"/>
              <exon start="49939" stop="50061"/>
              <exon start="50161" stop="50466"/>
              <exon start="51723" stop="51809"/>
              <exon start="52254" stop="52321"/>
              <exon start="52776" stop="52842"/>
              <exon start="53462" stop="53596"/>
              <exon start="53694" stop="53774"/>
              <exon start="54445" stop="54499"/>
              <exon start="54694" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47935" stop="48041"/>
              <exon start="48119" stop="48182"/>
              <exon start="48275" stop="48414"/>
              <exon start="49553" stop="49837"/>
              <exon start="49939" stop="49944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51725" stop="51809"/>
              <exon start="52254" stop="52321"/>
              <exon start="52776" stop="52842"/>
              <exon start="53462" stop="53596"/>
              <exon start="53694" stop="53774"/>
              <exon start="54445" stop="54499"/>
              <exon start="54694" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51771" stop="51809"/>
              <exon start="52254" stop="52321"/>
              <exon start="52776" stop="52842"/>
              <exon start="53462" stop="53596"/>
              <exon start="53694" stop="53774"/>
              <exon start="54445" stop="54499"/>
              <exon start="54694" stop="54798"/>
              <exon start="54873" stop="54944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53492" stop="53596"/>
              <exon start="53694" stop="53774"/>
              <exon start="54445" stop="54499"/>
              <exon start="54694" stop="54798"/>
              <exon start="54873" stop="54892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54742" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54742" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54742" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54772" stop="54798"/>
              <exon start="54873" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54895" stop="54944"/>
              <exon start="55366" stop="55490"/>
              <exon start="55730" stop="56172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCCATGGCCATGGACTAGAGATGAAAACCACAAGTCAAACTCCAATCTCTAATCGAAAGAGACGATGGCGGATACACTCGCTGCTCTTAGGTCTTTAATGTCCTCTCACTCTCCTTCTCTTCATGCTCTGATTATTCCTTCCGAAGATTATCATCAG : AGCGAATATGTATCGGCACGGGACAAAAGACGCGCATTTGTTTCTGGATTCACCGGAAGTGCTG : GTTTGGCGCTTATAACCATGGATGAAGCACTTTTATGGACCGATGGCAGGTATTTCTTACAAGCAGCTCAGCAGCTCAGTGACCAGTGGAAGCTCATGCGTATGGGAGAAGATCCTCCCGTTGATATCTGGATGGCCAAT : AATCTACCAAAGGATGCGGCCATTGGTGTGGATACGTGGTGTGTATCAGTAGATACTGCACAGAAATGGGAGTGTGCTTTTGCTAAGAAACAACAAAAGTTGGTACAAACAACTAGAAACTTGGTTGATGATGTTTGGAAAAATCGGCTACCTGCCCAAGCAAATCCTGTAATTGTGCATCCGTTGCAATTTGCTGGTCAGTCTGTTGCAGAGAAGTTGAAAGAATTGAGGAAAAAGCTTGTAATGGGGAAAGCTTGTGCTATTATTATAACAGCGCTTGATGAA : GTTGCATGGTTATATAATGTCCGTGGCAGTGACGTATCATATTGCCCAGTTGTTCATGCATTTGCGATTGTGACTATAGATTCAGCCTTCTTCTACGTGGATAAGCAAAAATTGTCTCCTGAG : GCAAACTCTTACATGGAAGAAAATGGAATTATGGTGCGGGATTATGGTGATGTTAGCTCAGATGTGGTCCTCCTTGCATCTGATCAACTCACTTCTTGCTCCTCAACTAAGGGGTCTAAAGGGAACCCAAAGATTGATGTTAGAAATGCCACTTATGTAGGAAATAGTGATAGTCATGCTGCTGAGTTTGTAAATGACCTCATTTGGGTTGATCCTGGAGCATGTTGCTTCGCTTTGTATTCTAAATTGAGTGCTGATAAAGTTCTCCTTCAGCAATCACCTTTGGCCCTTGCAAAAGCTCTGAAG : AACCCTGTTGAGATAGAAGGATTAAAGAAGGCCCATTTTCGGGATGGGGCAGCTGTTGTGCAATATCTTGTCTGGCTTGATAAGCAG : ATGCAGGAAATATATGGAGCATCTGGTTATTTCATGGAGGCTGAGAGTACCAAACAGAAGAAACAACT : GGGGACTAAAAGACTGACAGAAGTCTCTGTGAGTGATAAGCTGGAGGAGTTCCGTGCATCAAAGGAG : CATTTTAGAGGATTAAGTTTCCGAACTACCTCTTCTGTTGGCTCAAATGCAGCCATTATCCACTATAAACCTGAGGCAGAAACATGTGCTGAACTCGATCCAGATTGTATTTACCTATTCGATTCTGGAGCACAG : TATCTGGATGGAACAACTGATATTACACGGACTATTCATTTCGGAAAACCTTCTCCACATGAGAAATCTAGTTACACGGCG : GTTCTTAAAGGACATATATCTTTGGGAAACGCCAGGTTTCCTAACGGAACCAATG : GGCAAGCTCTTGACATTCTTGCTCGAATTCCTTTGTGGAAAGATGGTCTTGACTATAGGCATGGTACTGGACACGGGATCGGGTCTTACTTAAATGTACATGAAG : GACCTCATAATATTAGTTTCAGGCCATCTGCACGGGATGTGCCGCTACAAGTTTCAATGGCTGTAACAGATG : AACCTGGTTATTATGAAGACGGGAACTTTGGTATAAGAATAGAGAATGTTCTTATTGTCAAGGAGGGCCATACGAAGTTCAACTTCGGCAATAAGGGCTACTTATCATTTGAGCATATAACTTGG : GCACCATACCAGAGGAAACTAATTGACGTGAGCCTTCTGATTCCTGAAGAGATTGAATGGTTAAATGAATACCATGCAAAATGTAGGGAAATTCTTACTCCTTACCTGAATACATCTGAGATGGAATGGCTGAAGAAGGCTACCGAACCCATTGCAGCTTGACATGCCTCATTTGTTAGGGGATTGGAGTTGAGGTTAATCAAAGGCTACTGATCCTTTTCCAGCTTAAGCCCTTCATCATATGTAGTTAAATCATAAAGATGCGACAAGTCTATGCTGCGTTTCGACGGAGTTAATACCGTAACTCATTTTTGCGGGCTCGCTTGCTTTATTCTTCTCCTTCCCCTCACTATACAGCTCCCATTATCTTTGAACTCTTTCATTAATTGGTAACAACTACAACACTCTGAAATAAAATCTCCAAACAACGGCACATAATGTTT</gDNA_template>
            <first_frame> V  P  W  P  W  T  R  D  E  N  H  K  S  N  S  N  L  *  S  K  E  T  M  A  D  T  L  A  A  L  R  S  L  M  S  S  H  S  P  S  L  H  A  L  I  I  P  S  E  D  Y  H  Q  :  S  E  Y  V  S  A  R  D  K  R  R  A  F  V  S  G  F  T  G  S  A   : G  L  A  L  I  T  M  D  E  A  L  L  W  T  D  G  R  Y  F  L  Q  A  A  Q  Q  L  S  D  Q  W  K  L  M  R  M  G  E  D  P  P  V  D  I  W  M  A  N  :  N  L  P  K  D  A  A  I  G  V  D  T  W  C  V  S  V  D  T  A  Q  K  W  E  C  A  F  A  K  K  Q  Q  K  L  V  Q  T  T  R  N  L  V  D  D  V  W  K  N  R  L  P  A  Q  A  N  P  V  I  V  H  P  L  Q  F  A  G  Q  S  V  A  E  K  L  K  E  L  R  K  K  L  V  M  G  K  A  C  A  I  I  I  T  A  L  D  E  :  V  A  W  L  Y  N  V  R  G  S  D  V  S  Y  C  P  V  V  H  A  F  A  I  V  T  I  D  S  A  F  F  Y  V  D  K  Q  K  L  S  P  E  :  A  N  S  Y  M  E  E  N  G  I  M  V  R  D  Y  G  D  V  S  S  D  V  V  L  L  A  S  D  Q  L  T  S  C  S  S  T  K  G  S  K  G  N  P  K  I  D  V  R  N  A  T  Y  V  G  N  S  D  S  H  A  A  E  F  V  N  D  L  I  W  V  D  P  G  A  C  C  F  A  L  Y  S  K  L  S  A  D  K  V  L  L  Q  Q  S  P  L  A  L  A  K  A  L  K  :  N  P  V  E  I  E  G  L  K  K  A  H  F  R  D  G  A  A  V  V  Q  Y  L  V  W  L  D  K  Q  :  M  Q  E  I  Y  G  A  S  G  Y  F  M  E  A  E  S  T  K  Q  K  K  Q  L :   G  T  K  R  L  T  E  V  S  V  S  D  K  L  E  E  F  R  A  S  K  E  :  H  F  R  G  L  S  F  R  T  T  S  S  V  G  S  N  A  A  I  I  H  Y  K  P  E  A  E  T  C  A  E  L  D  P  D  C  I  Y  L  F  D  S  G  A  Q  :  Y  L  D  G  T  T  D  I  T  R  T  I  H  F  G  K  P  S  P  H  E  K  S  S  Y  T  A  :  V  L  K  G  H  I  S  L  G  N  A  R  F  P  N  G  T  N   : G  Q  A  L  D  I  L  A  R  I  P  L  W  K  D  G  L  D  Y  R  H  G  T  G  H  G  I  G  S  Y  L  N  V  H  E   : G  P  H  N  I  S  F  R  P  S  A  R  D  V  P  L  Q  V  S  M  A  V  T  D   : E  P  G  Y  Y  E  D  G  N  F  G  I  R  I  E  N  V  L  I  V  K  E  G  H  T  K  F  N  F  G  N  K  G  Y  L  S  F  E  H  I  T  W  :  A  P  Y  Q  R  K  L  I  D  V  S  L  L  I  P  E  E  I  E  W  L  N  E  Y  H  A  K  C  R  E  I  L  T  P  Y  L  N  T  S  E  M  E  W  L  K  K  A  T  E  P  I  A  A  *  H  A  S  F  V  R  G  L  E  L  R  L  I  K  G  Y  *  S  F  S  S  L  S  P  S  S  Y  V  V  K  S  *  R  C  D  K  S  M  L  R  F  D  G  V  N  T  V  T  H  F  C  G  L  A  C  F  I  L  L  L  P  L  T  I  Q  L  P  L  S  L  N  S  F  I  N  W  *  Q  L  Q  H  S  E  I  K  S  P  N  N  G  T  *  C   </first_frame>
            <second_frame>  C  H  G  H  G  L  E  M  K  T  T  S  Q  T  P  I  S  N  R  K  R  R  W  R  I  H  S  L  L  L  G  L  *  C  P  L  T  L  L  L  F  M  L  *  L  F  L  P  K  I  I  I  R :   A  N  M  Y  R  H  G  T  K  D  A  H  L  F  L  D  S  P  E  V  L  :  V  W  R  L  *  P  W  M  K  H  F  Y  G  P  M  A  G  I  S  Y  K  Q  L  S  S  S  V  T  S  G  S  S  C  V  W  E  K  I  L  P  L  I  S  G  W  P  I :   I  Y  Q  R  M  R  P  L  V  W  I  R  G  V  Y  Q  *  I  L  H  R  N  G  S  V  L  L  L  R  N  N  K  S  W  Y  K  Q  L  E  T  W  L  M  M  F  G  K  I  G  Y  L  P  K  Q  I  L  *  L  C  I  R  C  N  L  L  V  S  L  L  Q  R  S  *  K  N  *  G  K  S  L  *  W  G  K  L  V  L  L  L  *  Q  R  L  M  K :   L  H  G  Y  I  M  S  V  A  V  T  Y  H  I  A  Q  L  F  M  H  L  R  L  *  L  *  I  Q  P  S  S  T  W  I  S  K  N  C  L  L  R :   Q  T  L  T  W  K  K  M  E  L  W  C  G  I  M  V  M  L  A  Q  M  W  S  S  L  H  L  I  N  S  L  L  A  P  Q  L  R  G  L  K  G  T  Q  R  L  M  L  E  M  P  L  M  *  E  I  V  I  V  M  L  L  S  L  *  M  T  S  F  G  L  I  L  E  H  V  A  S  L  C  I  L  N  *  V  L  I  K  F  S  F  S  N  H  L  W  P  L  Q  K  L  *  R :   T  L  L  R  *  K  D  *  R  R  P  I  F  G  M  G  Q  L  L  C  N  I  L  S  G  L  I  S  R :   C  R  K  Y  M  E  H  L  V  I  S  W  R  L  R  V  P  N  R  R  N  N   : W  G  L  K  D  *  Q  K  S  L  *  V  I  S  W  R  S  S  V  H  Q  R  S :   I  L  E  D  *  V  S  E  L  P  L  L  L  A  Q  M  Q  P  L  S  T  I  N  L  R  Q  K  H  V  L  N  S  I  Q  I  V  F  T  Y  S  I  L  E  H  S :   I  W  M  E  Q  L  I  L  H  G  L  F  I  S  E  N  L  L  H  M  R  N  L  V  T  R  R :   F  L  K  D  I  Y  L  W  E  T  P  G  F  L  T  E  P  M  :  G  K  L  L  T  F  L  L  E  F  L  C  G  K  M  V  L  T  I  G  M  V  L  D  T  G  S  G  L  T  *  M  Y  M  K  :  D  L  I  I  L  V  S  G  H  L  H  G  M  C  R  Y  K  F  Q  W  L  *  Q  M  :  N  L  V  I  M  K  T  G  T  L  V  *  E  *  R  M  F  L  L  S  R  R  A  I  R  S  S  T  S  A  I  R  A  T  Y  H  L  S  I  *  L  G :   H  H  T  R  G  N  *  L  T  *  A  F  *  F  L  K  R  L  N  G  *  M  N  T  M  Q  N  V  G  K  F  L  L  L  T  *  I  H  L  R  W  N  G  *  R  R  L  P  N  P  L  Q  L  D  M  P  H  L  L  G  D  W  S  *  G  *  S  K  A  T  D  P  F  P  A  *  A  L  H  H  M  *  L  N  H  K  D  A  T  S  L  C  C  V  S  T  E  L  I  P  *  L  I  F  A  G  S  L  A  L  F  F  S  F  P  S  L  Y  S  S  H  Y  L  *  T  L  S  L  I  G  N  N  Y  N  T  L  K  *  N  L  Q  T  T  A  H  N  V  </second_frame>
            <third_frame>   A  M  A  M  D  *  R  *  K  P  Q  V  K  L  Q  S  L  I  E  R  D  D  G  G  Y  T  R  C  S  *  V  F  N  V  L  S  L  S  F  S  S  C  S  D  Y  S  F  R  R  L  S  S   : E  R  I  C  I  G  T  G  Q  K  T  R  I  C  F  W  I  H  R  K  C  W :   F  G  A  Y  N  H  G  *  S  T  F  M  D  R  W  Q  V  F  L  T  S  S  S  A  A  Q  *  P  V  E  A  H  A  Y  G  R  R  S  S  R  *  Y  L  D  G  Q   : *  S  T  K  G  C  G  H  W  C  G  Y  V  V  C  I  S  R  Y  C  T  E  M  G  V  C  F  C  *  E  T  T  K  V  G  T  N  N  *  K  L  G  *  *  C  L  E  K  S  A  T  C  P  S  K  S  C  N  C  A  S  V  A  I  C  W  S  V  C  C  R  E  V  E  R  I  E  E  K  A  C  N  G  E  S  L  C  Y  Y  Y  N  S  A  *  *   : S  C  M  V  I  *  C  P  W  Q  *  R  I  I  L  P  S  C  S  C  I  C  D  C  D  Y  R  F  S  L  L  L  R  G  *  A  K  I  V  S  *   : G  K  L  L  H  G  R  K  W  N  Y  G  A  G  L  W  *  C  *  L  R  C  G  P  P  C  I  *  S  T  H  F  L  L  L  N  *  G  V  *  R  E  P  K  D  *  C  *  K  C  H  L  C  R  K  *  *  *  S  C  C  *  V  C  K  *  P  H  L  G  *  S  W  S  M  L  L  R  F  V  F  *  I  E  C  *  *  S  S  P  S  A  I  T  F  G  P  C  K  S  S  E   : E  P  C  *  D  R  R  I  K  E  G  P  F  S  G  W  G  S  C  C  A  I  S  C  L  A  *  *  A   : D  A  G  N  I  W  S  I  W  L  F  H  G  G  *  E  Y  Q  T  E  E  T  T  :  G  D  *  K  T  D  R  S  L  C  E  *  *  A  G  G  V  P  C  I  K  G   : A  F  *  R  I  K  F  P  N  Y  L  F  C  W  L  K  C  S  H  Y  P  L  *  T  *  G  R  N  M  C  *  T  R  S  R  L  Y  L  P  I  R  F  W  S  T   : V  S  G  W  N  N  *  Y  Y  T  D  Y  S  F  R  K  T  F  S  T  *  E  I  *  L  H  G   : G  S  *  R  T  Y  I  F  G  K  R  Q  V  S  *  R  N  Q  W :   A  S  S  *  H  S  C  S  N  S  F  V  E  R  W  S  *  L  *  A  W  Y  W  T  R  D  R  V  L  L  K  C  T  *  R :   T  S  *  Y  *  F  Q  A  I  C  T  G  C  A  A  T  S  F  N  G  C  N  R  * :   T  W  L  L  *  R  R  E  L  W  Y  K  N  R  E  C  S  Y  C  Q  G  G  P  Y  E  V  Q  L  R  Q  *  G  L  L  I  I  *  A  Y  N  L   : G  T  I  P  E  E  T  N  *  R  E  P  S  D  S  *  R  D  *  M  V  K  *  I  P  C  K  M  *  G  N  S  Y  S  L  P  E  Y  I  *  D  G  M  A  E  E  G  Y  R  T  H  C  S  L  T  C  L  I  C  *  G  I  G  V  E  V  N  Q  R  L  L  I  L  F  Q  L  K  P  F  I  I  C  S  *  I  I  K  M  R  Q  V  Y  A  A  F  R  R  S  *  Y  R  N  S  F  L  R  A  R  L  L  Y  S  S  P  S  P  H  Y  T  A  P  I  I  F  E  L  F  H  *  L  V  T  T  T  T  L  *  N  K  I  S  K  Q  R  H  I  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47937" stop="48041"/>
                    <exon start="48119" stop="48182"/>
                    <exon start="48275" stop="48414"/>
                    <exon start="49553" stop="49837"/>
                    <exon start="49939" stop="50061"/>
                    <exon start="50161" stop="50466"/>
                    <exon start="51723" stop="51809"/>
                    <exon start="52254" stop="52321"/>
                    <exon start="52776" stop="52842"/>
                    <exon start="53462" stop="53596"/>
                    <exon start="53694" stop="53774"/>
                    <exon start="54445" stop="54499"/>
                    <exon start="54694" stop="54798"/>
                    <exon start="54873" stop="54944"/>
                    <exon start="55366" stop="55490"/>
                    <exon start="55730" stop="55891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1977</number_coding_nucleotides>
                  <number_encoded_amino_acids>659</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKETMADTLAALRSLMSSHSPSLHALIIPSEDYHQSEYVSARDKRRAFVSGFTGSAGLALITMDEALLWTDGRYFLQAAQQLSDQWKLMRMGEDPPVDIWMANNLPKDAAIGVDTWCVSVDTAQKWECAFAKKQQKLVQTTRNLVDDVWKNRLPAQANPVIVHPLQFAGQSVAEKLKELRKKLVMGKACAIIITALDEVAWLYNVRGSDVSYCPVVHAFAIVTIDSAFFYVDKQKLSPEANSYMEENGIMVRDYGDVSSDVVLLASDQLTSCSSTKGSKGNPKIDVRNATYVGNSDSHAAEFVNDLIWVDPGACCFALYSKLSADKVLLQQSPLALAKALKNPVEIEGLKKAHFRDGAAVVQYLVWLDKQMQEIYGASGYFMEAESTKQKKQLGTKRLTEVSVSDKLEEFRASKEHFRGLSFRTTSSVGSNAAIIHYKPEAETCAELDPDCIYLFDSGAQYLDGTTDITRTIHFGKPSPHEKSSYTAVLKGHISLGNARFPNGTNGQALDILARIPLWKDGLDYRHGTGHGIGSYLNVHEGPHNISFRPSARDVPLQVSMAVTDEPGYYEDGNFGIRIENVLIVKEGHTKFNFGNKGYLSFEHITWAPYQRKLIDVSLLIPEEIEWLNEYHAKCREILTPYLNTSEMEWLKKATEPIAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59396" PGL_stop="59941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59396" e_stop="59941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="59396" e_stop="59941" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59396" stop="59941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAAATTTATCATCAGATGGATGATTTAGGCACCCCCAGATCAGCTATTTCCTTCAATGTGCTTTTATCAGCTTGCGTGCGCTCAAAACTATATGATCGTGTCCCCCAGCTGTTTGATGAAATTCCAGTGAAGTATGGATTTTTACCTGATAAAGTGTCGTACGGTATACTGATTAGGTCATATTGTGAAACGGGGTCGCCGGAAATGGCAATGGAAATACTCAAGGTGATGGAGGAGAAAAGTGTGGAGATTACAACGGTTACTTTCACTACTATACTTCATTCATTCTACAAGAAAGGGAAGAGTGATGAGGCGGAGAAGGTATGGAACGAGATGGTGAACAGAGGGTGTGGTCCAGATGTTGGTGCATACAATGTGAAGATTATGAACATTCAGGGGGGTGATCTGGAGGGCGTGAAAGCTTTAATTGAGGAAATGAACGATGCTGGATTGAAACCTGATACGATTAGCTACAATTACTTGATGACTTGTTATTGTAAGAATGAATTGATGGATGAGGCACAGATGGTTTATGATGATCTGG</gDNA_template>
            <first_frame> S  K  F  I  I  R  W  M  I  *  A  P  P  D  Q  L  F  P  S  M  C  F  Y  Q  L  A  C  A  Q  N  Y  M  I  V  S  P  S  C  L  M  K  F  Q  *  S  M  D  F  Y  L  I  K  C  R  T  V  Y  *  L  G  H  I  V  K  R  G  R  R  K  W  Q  W  K  Y  S  R  *  W  R  R  K  V  W  R  L  Q  R  L  L  S  L  L  Y  F  I  H  S  T  R  K  G  R  V  M  R  R  R  R  Y  G  T  R  W  *  T  E  G  V  V  Q  M  L  V  H  T  M  *  R  L  *  T  F  R  G  V  I  W  R  A  *  K  L  *  L  R  K  *  T  M  L  D  *  N  L  I  R  L  A  T  I  T  *  *  L  V  I  V  R  M  N  *  W  M  R  H  R  W  F  M  M  I  W </first_frame>
            <second_frame>  Q  N  L  S  S  D  G  *  F  R  H  P  Q  I  S  Y  F  L  Q  C  A  F  I  S  L  R  A  L  K  T  I  *  S  C  P  P  A  V  *  *  N  S  S  E  V  W  I  F  T  *  *  S  V  V  R  Y  T  D  *  V  I  L  *  N  G  V  A  G  N  G  N  G  N  T  Q  G  D  G  G  E  K  C  G  D  Y  N  G  Y  F  H  Y  Y  T  S  F  I  L  Q  E  R  E  E  *  *  G  G  E  G  M  E  R  D  G  E  Q  R  V  W  S  R  C  W  C  I  Q  C  E  D  Y  E  H  S  G  G  *  S  G  G  R  E  S  F  N  *  G  N  E  R  C  W  I  E  T  *  Y  D  *  L  Q  L  L  D  D  L  L  L  *  E  *  I  D  G  *  G  T  D  G  L  *  *  S   </second_frame>
            <third_frame>   K  I  Y  H  Q  M  D  D  L  G  T  P  R  S  A  I  S  F  N  V  L  L  S  A  C  V  R  S  K  L  Y  D  R  V  P  Q  L  F  D  E  I  P  V  K  Y  G  F  L  P  D  K  V  S  Y  G  I  L  I  R  S  Y  C  E  T  G  S  P  E  M  A  M  E  I  L  K  V  M  E  E  K  S  V  E  I  T  T  V  T  F  T  T  I  L  H  S  F  Y  K  K  G  K  S  D  E  A  E  K  V  W  N  E  M  V  N  R  G  C  G  P  D  V  G  A  Y  N  V  K  I  M  N  I  Q  G  G  D  L  E  G  V  K  A  L  I  E  E  M  N  D  A  G  L  K  P  D  T  I  S  Y  N  Y  L  M  T  C  Y  C  K  N  E  L  M  D  E  A  Q  M  V  Y  D  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59398" stop="59940"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIYHQMDDLGTPRSAISFNVLLSACVRSKLYDRVPQLFDEIPVKYGFLPDKVSYGILIRSYCETGSPEMAMEILKVMEEKSVEITTVTFTTILHSFYKKGKSDEAEKVWNEMVNRGCGPDVGAYNVKIMNIQGGDLEGVKALIEEMNDAGLKPDTISYNYLMTCYCKNELMDEAQMVYDDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="66596" PGL_stop="65613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66596" e_stop="65613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="66596" e_stop="65613" e_length="984"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66596" stop="65900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66005" stop="65613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65990" stop="65613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTTGATGAACACTTGGGAAGACGCGGAGGCCGGTTCACTCAAAGCGTTAAGAGAAAATGAAATATTAAAAGCTATAGTGAAGTCACCGGTTTATCCGGTTGGACCATTGATTAGACAAGAACAACAAATCATTGATGGAGATGATGATGGTAACAATTCTGTCCTAAATTGGTTGGATAAACAAATGCCTAATTCAGTGCTATACATATCTTTCGGGAGTGGTGGGACCCTCTCGTCAAAACAATTAACTGAGTTAGCTTTTGGGTTGGAGTTAAGTCATCAGAAGTTCATTTGGGTGGTGAGGCCACCGTCAGAAGATGGTGCAGACAAGTCATATTTCACAACTGGAGATCAGGGCAAGAACACTCCTGAGTACTTGCCAGAAGGTTTTCAAACACGGACCAAAGATTTTGGATTGGTGATTCAGATGTGGACGGATCAAACAAGAATCTTGAGCCACCCATCAGTCGGGGGATTTTTGACGCACTGTGGATGGAATTCTAGCATTGAGAGTATAACAAATGGTTTGCCAATGATTGCGTGGCCGTTATATGCTGAACAGAGACAAAATGCTACTATGCTCACGGAGGAACTTAGAGTGGCTGTTGGGCCAAAGGTATTGCCAACAAAGGAAGTGGTGGAAAGGGAAGAAATAGAGCAATTGGTGAGAATGGTAATGCAATATAAAGAAGGAAATGAATTGAAGGAAAATGTGAAGAAACTGAAGATGAGTGCAGAGAAAGCACTAAGTATAGGAGGCTCCTCTCATGATTCAATGTGTCAAGTCCTCAGAGACATTGAGAAGAGATCTATCCATGGTTGCAAGAACATTAAGGTGTGAGGAAACTATCTAAAAAGGGTAAGATAATGAGTGATTAGGGCTATATATACCCTAAAGTTGTCTATGTTATGTTGTTATTATGTGCTACTATAATTTACAGTATGCATGTTTCGAATAGAATTTACCACTATAATAAAGCA</gDNA_template>
            <first_frame> D  L  D  E  H  L  G  R  R  G  G  R  F  T  Q  S  V  K  R  K  *  N  I  K  S  Y  S  E  V  T  G  L  S  G  W  T  I  D  *  T  R  T  T  N  H  *  W  R  *  *  W  *  Q  F  C  P  K  L  V  G  *  T  N  A  *  F  S  A  I  H  I  F  R  E  W  W  D  P  L  V  K  T  I  N  *  V  S  F  W  V  G  V  K  S  S  E  V  H  L  G  G  E  A  T  V  R  R  W  C  R  Q  V  I  F  H  N  W  R  S  G  Q  E  H  S  *  V  L  A  R  R  F  S  N  T  D  Q  R  F  W  I  G  D  S  D  V  D  G  S  N  K  N  L  E  P  P  I  S  R  G  I  F  D  A  L  W  M  E  F  *  H  *  E  Y  N  K  W  F  A  N  D  C  V  A  V  I  C  *  T  E  T  K  C  Y  Y  A  H  G  G  T  *  S  G  C  W  A  K  G  I  A  N  K  G  S  G  G  K  G  R  N  R  A  I  G  E  N  G  N  A  I  *  R  R  K  *  I  E  G  K  C  E  E  T  E  D  E  C  R  E  S  T  K  Y  R  R  L  L  S  *  F  N  V  S  S  P  Q  R  H  *  E  E  I  Y  P  W  L  Q  E  H  *  G  V  R  K  L  S  K  K  G  K  I  M  S  D  *  G  Y  I  Y  P  K  V  V  Y  V  M  L  L  L  C  A  T  I  I  Y  S  M  H  V  S  N  R  I  Y  H  Y  N  K  A </first_frame>
            <second_frame>  I  L  M  N  T  W  E  D  A  E  A  G  S  L  K  A  L  R  E  N  E  I  L  K  A  I  V  K  S  P  V  Y  P  V  G  P  L  I  R  Q  E  Q  Q  I  I  D  G  D  D  D  G  N  N  S  V  L  N  W  L  D  K  Q  M  P  N  S  V  L  Y  I  S  F  G  S  G  G  T  L  S  S  K  Q  L  T  E  L  A  F  G  L  E  L  S  H  Q  K  F  I  W  V  V  R  P  P  S  E  D  G  A  D  K  S  Y  F  T  T  G  D  Q  G  K  N  T  P  E  Y  L  P  E  G  F  Q  T  R  T  K  D  F  G  L  V  I  Q  M  W  T  D  Q  T  R  I  L  S  H  P  S  V  G  G  F  L  T  H  C  G  W  N  S  S  I  E  S  I  T  N  G  L  P  M  I  A  W  P  L  Y  A  E  Q  R  Q  N  A  T  M  L  T  E  E  L  R  V  A  V  G  P  K  V  L  P  T  K  E  V  V  E  R  E  E  I  E  Q  L  V  R  M  V  M  Q  Y  K  E  G  N  E  L  K  E  N  V  K  K  L  K  M  S  A  E  K  A  L  S  I  G  G  S  S  H  D  S  M  C  Q  V  L  R  D  I  E  K  R  S  I  H  G  C  K  N  I  K  V  *  G  N  Y  L  K  R  V  R  *  *  V  I  R  A  I  Y  T  L  K  L  S  M  L  C  C  Y  Y  V  L  L  *  F  T  V  C  M  F  R  I  E  F  T  T  I  I  K   </second_frame>
            <third_frame>   S  *  *  T  L  G  K  T  R  R  P  V  H  S  K  R  *  E  K  M  K  Y  *  K  L  *  *  S  H  R  F  I  R  L  D  H  *  L  D  K  N  N  K  S  L  M  E  M  M  M  V  T  I  L  S  *  I  G  W  I  N  K  C  L  I  Q  C  Y  T  Y  L  S  G  V  V  G  P  S  R  Q  N  N  *  L  S  *  L  L  G  W  S  *  V  I  R  S  S  F  G  W  *  G  H  R  Q  K  M  V  Q  T  S  H  I  S  Q  L  E  I  R  A  R  T  L  L  S  T  C  Q  K  V  F  K  H  G  P  K  I  L  D  W  *  F  R  C  G  R  I  K  Q  E  S  *  A  T  H  Q  S  G  D  F  *  R  T  V  D  G  I  L  A  L  R  V  *  Q  M  V  C  Q  *  L  R  G  R  Y  M  L  N  R  D  K  M  L  L  C  S  R  R  N  L  E  W  L  L  G  Q  R  Y  C  Q  Q  R  K  W  W  K  G  K  K  *  S  N  W  *  E  W  *  C  N  I  K  K  E  M  N  *  R  K  M  *  R  N  *  R  *  V  Q  R  K  H  *  V  *  E  A  P  L  M  I  Q  C  V  K  S  S  E  T  L  R  R  D  L  S  M  V  A  R  T  L  R  C  E  E  T  I  *  K  G  *  D  N  E  *  L  G  L  Y  I  P  *  S  C  L  C  Y  V  V  I  M  C  Y  Y  N  L  Q  Y  A  C  F  E  *  N  L  P  L  *  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66595" stop="65753"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILMNTWEDAEAGSLKALRENEILKAIVKSPVYPVGPLIRQEQQIIDGDDDGNNSVLNWLDKQMPNSVLYISFGSGGTLSSKQLTELAFGLELSHQKFIWVVRPPSEDGADKSYFTTGDQGKNTPEYLPEGFQTRTKDFGLVIQMWTDQTRILSHPSVGGFLTHCGWNSSIESITNGLPMIAWPLYAEQRQNATMLTEELRVAVGPKVLPTKEVVEREEIEQLVRMVMQYKEGNELKENVKKLKMSAEKALSIGGSSHDSMCQVLRDIEKRSIHGCKNIKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="72467" PGL_stop="74768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72467" e_stop="72827"/>
            <exon e_start="74041" e_stop="74664"/>
            <exon e_start="74763" e_stop="74768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.716" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.979"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72467" e_stop="72827" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.716">
            <gDNA_intron_boundary i_start="72828" i_stop="74040" i_length="1213"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="74041" e_stop="74664" e_length="624"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="74665" i_stop="74762" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74763" e_stop="74768" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72467" stop="72827"/>
              <exon start="74041" stop="74460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72479" stop="72827"/>
              <exon start="74041" stop="74452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72484" stop="72827"/>
              <exon start="74041" stop="74413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74058" stop="74664"/>
              <exon start="74763" stop="74768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357971" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAACTCATCACCCACCAAAACATCCCTCCATCTTTCTTATTATCCAGATTTTGTACTCATAATAACATAAATTGTACTGAATCTTATCACATATTCTTTACGTTTGATGATTGTACGTATATTGTATGGTAAGTAGATCTCAAATCTTCATCTGGGGTTGTCTAAAAATGGAATCTTGCAGCAAATAAACAGAGCCACGTTGAATGAATGGCGAGTTAGTGCCCCAGAAGGAGAAGGGCCAGCAAAAGGTTGACCTTTATTCCTTTGGGATTGATGGGGTTAAGCGCTAGAGCTTCAAGATTACCTTCTTCTGTTTTTCGACCTAAATCTCTGCTTCCCAGCCACCTTTCCACCATGAG : AACAAGGACAATTTTTGGGATCTCTATTTCCCTAATCATCATCAACATGGCCGCTATAATGGAGCGCGCTGATGAGAATCTCCTTCCAGCTGTTTATAAAGAAGTCAGTGAAGCTTTTACAGCAGGACCATCTGATCTTGGGTTTCTCACATTCATTAGGAACTTTGTGCAGGGAATTGCTTCTCCAGTGGCAGGTATTTTAGTTTTAAATTATGACCGACCCACGGTTCTTGCAATTGGTATCCTCTTCTGGGCCCTATCAACCGGTGCAGTGGGTGCGAGCAAGTATTTTCTGCAGGTTGGCTTCTGGAGAGCTGTAAATGGCTTCGGTCTGGCAATTGTGATACCTGCTTTGCAGTCCTTCATAGCTGATAGCTACAAGGATGAAGTCAGAGGGACGGGATTTGGGTTTCTTAATCTAATTGGTACTGTGGGTGGGATAGGAGGTGGAGCTATAGCTACAGTTATGGCTGGTCATGAATACTGGGGCATACCAGGATGGCGCTTTTCCTTCATCGTGATGGCAACTTTGAGTTGTTTCATAGGATTTCTTGTCTTCTCTTTTGTCGTTGACCCAAGGAAGAAAAGCAGTGGCCAGCATGATATTTCAAAACAGTCTGACAG : GGATGA</gDNA_template>
            <first_frame> P  N  S  S  P  T  K  T  S  L  H  L  S  Y  Y  P  D  F  V  L  I  I  T  *  I  V  L  N  L  I  T  Y  S  L  R  L  M  I  V  R  I  L  Y  G  K  *  I  S  N  L  H  L  G  L  S  K  N  G  I  L  Q  Q  I  N  R  A  T  L  N  E  W  R  V  S  A  P  E  G  E  G  P  A  K  G  *  P  L  F  L  W  D  *  W  G  *  A  L  E  L  Q  D  Y  L  L  L  F  F  D  L  N  L  C  F  P  A  T  F  P  P  *   : E  Q  G  Q  F  L  G  S  L  F  P  *  S  S  S  T  W  P  L  *  W  S  A  L  M  R  I  S  F  Q  L  F  I  K  K  S  V  K  L  L  Q  Q  D  H  L  I  L  G  F  S  H  S  L  G  T  L  C  R  E  L  L  L  Q  W  Q  V  F  *  F  *  I  M  T  D  P  R  F  L  Q  L  V  S  S  S  G  P  Y  Q  P  V  Q  W  V  R  A  S  I  F  C  R  L  A  S  G  E  L  *  M  A  S  V  W  Q  L  *  Y  L  L  C  S  P  S  *  L  I  A  T  R  M  K  S  E  G  R  D  L  G  F  L  I  *  L  V  L  W  V  G  *  E  V  E  L  *  L  Q  L  W  L  V  M  N  T  G  A  Y  Q  D  G  A  F  P  S  S  *  W  Q  L  *  V  V  S  *  D  F  L  S  S  L  L  S  L  T  Q  G  R  K  A  V  A  S  M  I  F  Q  N  S  L  T   : G  M  </first_frame>
            <second_frame>  Q  T  H  H  P  P  K  H  P  S  I  F  L  I  I  Q  I  L  Y  S  *  *  H  K  L  Y  *  I  L  S  H  I  L  Y  V  *  *  L  Y  V  Y  C  M  V  S  R  S  Q  I  F  I  W  G  C  L  K  M  E  S  C  S  K  *  T  E  P  R  *  M  N  G  E  L  V  P  Q  K  E  K  G  Q  Q  K  V  D  L  Y  S  F  G  I  D  G  V  K  R  *  S  F  K  I  T  F  F  C  F  S  T  *  I  S  A  S  Q  P  P  F  H  H  E  :  N  K  D  N  F  W  D  L  Y  F  P  N  H  H  Q  H  G  R  Y  N  G  A  R  *  *  E  S  P  S  S  C  L  *  R  S  Q  *  S  F  Y  S  R  T  I  *  S  W  V  S  H  I  H  *  E  L  C  A  G  N  C  F  S  S  G  R  Y  F  S  F  K  L  *  P  T  H  G  S  C  N  W  Y  P  L  L  G  P  I  N  R  C  S  G  C  E  Q  V  F  S  A  G  W  L  L  E  S  C  K  W  L  R  S  G  N  C  D  T  C  F  A  V  L  H  S  *  *  L  Q  G  *  S  Q  R  D  G  I  W  V  S  *  S  N  W  Y  C  G  W  D  R  R  W  S  Y  S  Y  S  Y  G  W  S  *  I  L  G  H  T  R  M  A  L  F  L  H  R  D  G  N  F  E  L  F  H  R  I  S  C  L  L  F  C  R  *  P  K  E  E  K  Q  W  P  A  *  Y  F  K  T  V  *  Q  :  G  * </second_frame>
            <third_frame>   K  L  I  T  H  Q  N  I  P  P  S  F  L  L  S  R  F  C  T  H  N  N  I  N  C  T  E  S  Y  H  I  F  F  T  F  D  D  C  T  Y  I  V  W  *  V  D  L  K  S  S  S  G  V  V  *  K  W  N  L  A  A  N  K  Q  S  H  V  E  *  M  A  S  *  C  P  R  R  R  R  A  S  K  R  L  T  F  I  P  L  G  L  M  G  L  S  A  R  A  S  R  L  P  S  S  V  F  R  P  K  S  L  L  P  S  H  L  S  T  M  R :   T  R  T  I  F  G  I  S  I  S  L  I  I  I  N  M  A  A  I  M  E  R  A  D  E  N  L  L  P  A  V  Y  K  E  V  S  E  A  F  T  A  G  P  S  D  L  G  F  L  T  F  I  R  N  F  V  Q  G  I  A  S  P  V  A  G  I  L  V  L  N  Y  D  R  P  T  V  L  A  I  G  I  L  F  W  A  L  S  T  G  A  V  G  A  S  K  Y  F  L  Q  V  G  F  W  R  A  V  N  G  F  G  L  A  I  V  I  P  A  L  Q  S  F  I  A  D  S  Y  K  D  E  V  R  G  T  G  F  G  F  L  N  L  I  G  T  V  G  G  I  G  G  G  A  I  A  T  V  M  A  G  H  E  Y  W  G  I  P  G  W  R  F  S  F  I  V  M  A  T  L  S  C  F  I  G  F  L  V  F  S  F  V  V  D  P  R  K  K  S  S  G  Q  H  D  I  S  K  Q  S  D  R :   D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72688" stop="72827"/>
                    <exon start="74041" stop="74664"/>
                    <exon start="74763" stop="74766"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPRRRRASKRLTFIPLGLMGLSARASRLPSSVFRPKSLLPSHLSTMRTRTIFGISISLIIINMAAIMERADENLLPAVYKEVSEAFTAGPSDLGFLTFIRNFVQGIASPVAGILVLNYDRPTVLAIGILFWALSTGAVGASKYFLQVGFWRAVNGFGLAIVIPALQSFIADSYKDEVRGTGFGFLNLIGTVGGIGGGAIATVMAGHEYWGIPGWRFSFIVMATLSCFIGFLVFSFVVDPRKKSSGQHDISKQSDRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="74914" PGL_stop="75653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74914" e_stop="75653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="74914" e_stop="75653" e_length="740"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74914" stop="75653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74915" stop="75467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366397" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTTTACATTATGGTTTGAATTAATCGGTAAGTGGCCCCTTTTTTTAGGAATTAGCATGTTGGGTTTTCTTGTGCTGATATAAATTTTGTTTGAGTGTTAACTGCATTAACGGTGATCATGAACTTCTGATGCAGGTTTTGATCATAATAGTGCAGCCACACTTGTCGGTCTATTTGCTGCTGGATGCGCATTAGGATCCTTCTTTGGTGGAGTAGTTGCAGACAAAATGTCTCGAATATACCCCCATACAGGACGTGTCATGTGTGCTCAATTTAGTTCTTTTATGGGCATCCCATTCTCATGGTTCCTTCTTCGAATTATCTCTCCGTCTATAAGCAGCTATTCCACATTTGCTGTGACTTTATTCATAATGGGCCTCACAATCAGCTGGTGTGCTACTGCTACAAATGGTCCCATGTTTGCAGAAGTGGTGCCTTCAAAGCACCGCACCATGATTTATGCTTTTGATCGTGCGTTTGAGGGTTCATTTTCTTCTTTTGCTGCTCCAATTGTAGGGATTCTTGCTGAGAAAATGTACGGTTATGATGCCAAATCTGTTGATCCGATATTAGGATCTCCTAGGGAGGCTTTAGCGCTGTCAAAAGGTCTCTTTTCAATGATGGCCGTGCCTTTTGGTTTATGTTGCTTGTTTTACACCCCTTTGTATTGGACATTCAAGCAGGACCGTGAGAATGCAAGACTTGCTGCTGCAAAAGAAACAGAGATGATATGACG</gDNA_template>
            <first_frame> V  F  F  T  L  W  F  E  L  I  G  K  W  P  L  F  L  G  I  S  M  L  G  F  L  V  L  I  *  I  L  F  E  C  *  L  H  *  R  *  S  *  T  S  D  A  G  F  D  H  N  S  A  A  T  L  V  G  L  F  A  A  G  C  A  L  G  S  F  F  G  G  V  V  A  D  K  M  S  R  I  Y  P  H  T  G  R  V  M  C  A  Q  F  S  S  F  M  G  I  P  F  S  W  F  L  L  R  I  I  S  P  S  I  S  S  Y  S  T  F  A  V  T  L  F  I  M  G  L  T  I  S  W  C  A  T  A  T  N  G  P  M  F  A  E  V  V  P  S  K  H  R  T  M  I  Y  A  F  D  R  A  F  E  G  S  F  S  S  F  A  A  P  I  V  G  I  L  A  E  K  M  Y  G  Y  D  A  K  S  V  D  P  I  L  G  S  P  R  E  A  L  A  L  S  K  G  L  F  S  M  M  A  V  P  F  G  L  C  C  L  F  Y  T  P  L  Y  W  T  F  K  Q  D  R  E  N  A  R  L  A  A  A  K  E  T  E  M  I  *   </first_frame>
            <second_frame>  F  S  L  H  Y  G  L  N  *  S  V  S  G  P  F  F  *  E  L  A  C  W  V  F  L  C  *  Y  K  F  C  L  S  V  N  C  I  N  G  D  H  E  L  L  M  Q  V  L  I  I  I  V  Q  P  H  L  S  V  Y  L  L  L  D  A  H  *  D  P  S  L  V  E  *  L  Q  T  K  C  L  E  Y  T  P  I  Q  D  V  S  C  V  L  N  L  V  L  L  W  A  S  H  S  H  G  S  F  F  E  L  S  L  R  L  *  A  A  I  P  H  L  L  *  L  Y  S  *  W  A  S  Q  S  A  G  V  L  L  L  Q  M  V  P  C  L  Q  K  W  C  L  Q  S  T  A  P  *  F  M  L  L  I  V  R  L  R  V  H  F  L  L  L  L  L  Q  L  *  G  F  L  L  R  K  C  T  V  M  M  P  N  L  L  I  R  Y  *  D  L  L  G  R  L  *  R  C  Q  K  V  S  F  Q  *  W  P  C  L  L  V  Y  V  A  C  F  T  P  L  C  I  G  H  S  S  R  T  V  R  M  Q  D  L  L  L  Q  K  K  Q  R  *  Y  D  </second_frame>
            <third_frame>   F  L  Y  I  M  V  *  I  N  R  *  V  A  P  F  F  R  N  *  H  V  G  F  S  C  A  D  I  N  F  V  *  V  L  T  A  L  T  V  I  M  N  F  *  C  R  F  *  S  *  *  C  S  H  T  C  R  S  I  C  C  W  M  R  I  R  I  L  L  W  W  S  S  C  R  Q  N  V  S  N  I  P  P  Y  R  T  C  H  V  C  S  I  *  F  F  Y  G  H  P  I  L  M  V  P  S  S  N  Y  L  S  V  Y  K  Q  L  F  H  I  C  C  D  F  I  H  N  G  P  H  N  Q  L  V  C  Y  C  Y  K  W  S  H  V  C  R  S  G  A  F  K  A  P  H  H  D  L  C  F  *  S  C  V  *  G  F  I  F  F  F  C  C  S  N  C  R  D  S  C  *  E  N  V  R  L  *  C  Q  I  C  *  S  D  I  R  I  S  *  G  G  F  S  A  V  K  R  S  L  F  N  D  G  R  A  F  W  F  M  L  L  V  L  H  P  F  V  L  D  I  Q  A  G  P  *  E  C  K  T  C  C  C  K  R  N  R  D  D  M  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75040" stop="75651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSDAGFDHNSAATLVGLFAAGCALGSFFGGVVADKMSRIYPHTGRVMCAQFSSFMGIPFSWFLLRIISPSISSYSTFAVTLFIMGLTISWCATATNGPMFAEVVPSKHRTMIYAFDRAFEGSFSSFAAPIVGILAEKMYGYDAKSVDPILGSPREALALSKGLFSMMAVPFGLCCLFYTPLYWTFKQDRENARLAAAKETEMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="75781" PGL_stop="75998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75781" e_stop="75998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="75781" e_stop="75998" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75781" stop="75998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75782" stop="75998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGCAGATTAAGTCTCCATTACACTTATATCATCTAACAGATCATACTCAAAATTCAAACATATAGATGCTGCTGTTGCCTGCCATCATCAGGCACTCCAACATTGAAGTAGTTGCTTCGGCATTGGCACACTGACAGGGTTACCTGTTTGTCTATGTTTTTACATGTAAATCCTGCCATTTTTGAAGTAACAAGAAAACTGCAGAACTTTAACATA</gDNA_template>
            <first_frame> T  A  D  *  V  S  I  T  L  I  S  S  N  R  S  Y  S  K  F  K  H  I  D  A  A  V  A  C  H  H  Q  A  L  Q  H  *  S  S  C  F  G  I  G  T  L  T  G  L  P  V  C  L  C  F  Y  M  *  I  L  P  F  L  K  *  Q  E  N  C  R  T  L  T   </first_frame>
            <second_frame>  R  Q  I  K  S  P  L  H  L  Y  H  L  T  D  H  T  Q  N  S  N  I  *  M  L  L  L  P  A  I  I  R  H  S  N  I  E  V  V  A  S  A  L  A  H  *  Q  G  Y  L  F  V  Y  V  F  T  C  K  S  C  H  F  *  S  N  K  K  T  A  E  L  *  H  </second_frame>
            <third_frame>   G  R  L  S  L  H  Y  T  Y  I  I  *  Q  I  I  L  K  I  Q  T  Y  R  C  C  C  C  L  P  S  S  G  T  P  T  L  K  *  L  L  R  H  W  H  T  D  R  V  T  C  L  S  M  F  L  H  V  N  P  A  I  F  E  V  T  R  K  L  Q  N  F  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0116F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="83202" PGL_stop="79313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83202" e_stop="83054"/>
            <exon e_start="82841" e_stop="82769"/>
            <exon e_start="82669" e_stop="82575"/>
            <exon e_start="80379" e_stop="80334"/>
            <exon e_start="80244" e_stop="80201"/>
            <exon e_start="79781" e_stop="79535"/>
            <exon e_start="79324" e_stop="79313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.843" e_score="1.000"/>
          <exon-intron don_prob="0.649" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.644" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83202" e_stop="83054" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.506">
            <gDNA_intron_boundary i_start="83053" i_stop="82842" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82841" e_stop="82769" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.985">
            <gDNA_intron_boundary i_start="82768" i_stop="82670" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82669" e_stop="82575" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.926">
            <gDNA_intron_boundary i_start="82574" i_stop="80380" i_length="2195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80379" e_stop="80334" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.883" acc_prob="0.843">
            <gDNA_intron_boundary i_start="80333" i_stop="80245" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80244" e_stop="80201" e_length="44"/>
          </exon>
          <intron i_serial="5" don_prob="0.649" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80200" i_stop="79782" i_length="419"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79781" e_stop="79535" e_length="247"/>
          </exon>
          <intron i_serial="6" don_prob="0.644" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79534" i_stop="79325" i_length="210"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79324" e_stop="79313" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83202" stop="83054"/>
              <exon start="82841" stop="82769"/>
              <exon start="82669" stop="82575"/>
              <exon start="80379" stop="80334"/>
              <exon start="80244" stop="80201"/>
              <exon start="79781" stop="79535"/>
              <exon start="79324" stop="79313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83202" stop="83054"/>
              <exon start="82841" stop="82769"/>
              <exon start="82669" stop="82575"/>
              <exon start="80379" stop="80334"/>
              <exon start="80244" stop="80201"/>
              <exon start="79781" stop="79693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACTTCATACGCTACTCTGCTGAAGTTGTACGCTACCGGCCCTTAACACTCCGGTGACGATGTACGATCAAAACTATTCAATACCAGCGCTTAACTTTCCAGTGACGGCGATAATACCTACTGCCAAGATTCGCTACTCTTATCTTG : AAGCTATCTGGTCGGAGCTTCCACGGCAATCATCACATCAATGTGATCAATTTTTCACCCCAGGTGATGTAAG : GCCAAGTGTGAAAATGAATCTTGTTAACAGCTAAAAGAGCAAATTACAAGGTCAAGGGAAGTGCACAAGTACATGTGATGGGGAGTCAAAAGAAG : GAATTGTTACCATGGGAGGCCAAATGGATATTGTAAGGTTTAGGAG : GACAACAAGTGTTTTGTACGTTGAATTGATGATTGGTACAAAAG : TGAGGATGACCTGCTTTGCACACGTGCTTCTCCTTGTCCTTGCTGCTGTTGTCCAGTGGGTTTGGGATTCATCTGGGTTCCCTTAAAAATTGAATCCAAGCGCTGGTTCATTCAAGTTTTCAGGATGCCTCTCAGGTCCTGATGTTTACACAATGAGGGTATACATGCCCAAATTGATGGATAAAGAGATGTGATAAGTCATCTTTTCTACACGTTGTTTCCCTAACAACCACGGATTAATTTGCAG : TGCATCTGACAT</gDNA_template>
            <first_frame> G  T  S  Y  A  T  L  L  K  L  Y  A  T  G  P  *  H  S  G  D  D  V  R  S  K  L  F  N  T  S  A  *  L  S  S  D  G  D  N  T  Y  C  Q  D  S  L  L  L  S  * :   S  Y  L  V  G  A  S  T  A  I  I  T  S  M  *  S  I  F  H  P  R  *  C  K  :  A  K  C  E  N  E  S  C  *  Q  L  K  E  Q  I  T  R  S  R  E  V  H  K  Y  M  *  W  G  V  K  R  R :   N  C  Y  H  G  R  P  N  G  Y  C  K  V  *  E  :  D  N  K  C  F  V  R  *  I  D  D  W  Y  K  S :   E  D  D  L  L  C  T  R  A  S  P  C  P  C  C  C  C  P  V  G  L  G  F  I  W  V  P  L  K  I  E  S  K  R  W  F  I  Q  V  F  R  M  P  L  R  S  *  C  L  H  N  E  G  I  H  A  Q  I  D  G  *  R  D  V  I  S  H  L  F  Y  T  L  F  P  *  Q  P  R  I  N  L  Q  :  C  I  *  H </first_frame>
            <second_frame>  E  L  H  T  L  L  C  *  S  C  T  L  P  A  L  N  T  P  V  T  M  Y  D  Q  N  Y  S  I  P  A  L  N  F  P  V  T  A  I  I  P  T  A  K  I  R  Y  S  Y  L   : E  A  I  W  S  E  L  P  R  Q  S  S  H  Q  C  D  Q  F  F  T  P  G  D  V  R :   P  S  V  K  M  N  L  V  N  S  *  K  S  K  L  Q  G  Q  G  K  C  T  S  T  C  D  G  E  S  K  E   : G  I  V  T  M  G  G  Q  M  D  I  V  R  F  R  R :   T  T  S  V  L  Y  V  E  L  M  I  G  T  K   : V  R  M  T  C  F  A  H  V  L  L  L  V  L  A  A  V  V  Q  W  V  W  D  S  S  G  F  P  *  K  L  N  P  S  A  G  S  F  K  F  S  G  C  L  S  G  P  D  V  Y  T  M  R  V  Y  M  P  K  L  M  D  K  E  M  *  *  V  I  F  S  T  R  C  F  P  N  N  H  G  L  I  C  S :   A  S  D   </second_frame>
            <third_frame>   N  F  I  R  Y  S  A  E  V  V  R  Y  R  P  L  T  L  R  *  R  C  T  I  K  T  I  Q  Y  Q  R  L  T  F  Q  *  R  R  *  Y  L  L  P  R  F  A  T  L  I  L  :  K  L  S  G  R  S  F  H  G  N  H  H  I  N  V  I  N  F  S  P  Q  V  M  *   : G  Q  V  *  K  *  I  L  L  T  A  K  R  A  N  Y  K  V  K  G  S  A  Q  V  H  V  M  G  S  Q  K  K  :  E  L  L  P  W  E  A  K  W  I  L  *  G  L  G   : G  Q  Q  V  F  C  T  L  N  *  *  L  V  Q  K  :  *  G  *  P  A  L  H  T  C  F  S  L  S  L  L  L  L  S  S  G  F  G  I  H  L  G  S  L  K  N  *  I  Q  A  L  V  H  S  S  F  Q  D  A  S  Q  V  L  M  F  T  Q  *  G  Y  T  C  P  N  *  W  I  K  R  C  D  K  S  S  F  L  H  V  V  S  L  T  T  T  D  *  F  A   : V  H  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82635" stop="82575"/>
                    <exon start="80379" stop="80334"/>
                    <exon start="80244" stop="80201"/>
                    <exon start="79781" stop="79696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKLQGQGKCTSTCDGESKEGIVTMGGQMDIVRFRRTTSVLYVELMIGTKVRMTCFAHVLLLVLAAVVQWVWDSSGFP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83177" stop="83054"/>
                    <exon start="82841" stop="82769"/>
                    <exon start="82669" stop="82636"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCTLPALNTPVTMYDQNYSIPALNFPVTAIIPTAKIRYSYLEAIWSELPRQSSHQCDQFFTPGDVRPSVKMNLVNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="96575" PGL_stop="95968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96575" e_stop="95968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="96575" e_stop="95968" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96575" stop="95968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96549" stop="96025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCATTCTCTCTTATATTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTCTCTCTCATGATTATCTTTTCTGATTTTCCTCCAACATTCAAGTTGCAAATATTTTTTTGCCATATATTTTGGTTGTTTTTTTAATCCAAAATTGAATCAACAAGAATCCCTTTAATTAAGATATCTATAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAAAATGTTGTTTGTATTTTTCAATTTCTGTTATGATTTACTCTCCAATGGCTGAATCCAAGAGGCTTACTAGAGGTATTCATCTTAATCAACCAATTTGTGGTGATTTTTCATCCTTTAATTTATTTATTACTTAATAAATAGTGTATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAGAGGGTATGAACATTTACAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTCTTTTTTAGAATTT</gDNA_template>
            <first_frame> K  V  I  L  S  Y  I  Y  L  F  K  L  L  I  L  S  P  I  *  F  F  F  S  L  M  I  I  F  S  D  F  P  P  T  F  K  L  Q  I  F  F  C  H  I  F  W  L  F  F  *  S  K  I  E  S  T  R  I  P  L  I  K  I  S  I  I  F  I  L  F  S  D  F  F  S  N  F  I  F  V  *  I  L  K  K  C  C  L  Y  F  S  I  S  V  M  I  Y  S  P  M  A  E  S  K  R  L  T  R  G  I  H  L  N  Q  P  I  C  G  D  F  S  S  F  N  L  F  I  T  *  *  I  V  Y  N  V  *  S  A  A  K  M  R  E  E  R  G  Y  E  H  L  Q  D  S  L  V  C  K  T  F  L  K  F  R  T  Q  M  *  N  L  C  L  L  V  R  I  L  K  K  T  T  K  I  E  *  L  S  N  N  F  L  L  V  C  F  V  F  I  V  L  F  *  N   </first_frame>
            <second_frame>  K  S  F  S  L  I  F  I  F  S  N  C  *  F  S  L  P  F  N  F  F  S  L  S  *  L  S  F  L  I  F  L  Q  H  S  S  C  K  Y  F  F  A  I  Y  F  G  C  F  F  N  P  K  L  N  Q  Q  E  S  L  *  L  R  Y  L  *  S  L  S  Y  F  Q  I  S  F  L  I  L  F  L  F  K  S  *  K  N  V  V  C  I  F  Q  F  L  L  *  F  T  L  Q  W  L  N  P  R  G  L  L  E  V  F  I  L  I  N  Q  F  V  V  I  F  H  P  L  I  Y  L  L  L  N  K  *  C  I  M  Y  D  P  L  L  K  *  G  K  K  E  G  M  N  I  Y  K  T  H  W  C  A  K  P  S  S  N  S  E  R  K  C  R  I  F  V  Y  S  *  G  S  *  K  R  R  R  R  S  N  S  C  R  T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  </second_frame>
            <third_frame>   S  H  S  L  L  Y  L  S  F  Q  I  V  N  S  L  S  H  L  I  F  F  L  S  H  D  Y  L  F  *  F  S  S  N  I  Q  V  A  N  I  F  L  P  Y  I  L  V  V  F  L  I  Q  N  *  I  N  K  N  P  F  N  *  D  I  Y  N  L  Y  P  I  F  R  F  L  F  *  F  Y  F  C  L  N  L  K  K  M  L  F  V  F  F  N  F  C  Y  D  L  L  S  N  G  *  I  Q  E  A  Y  *  R  Y  S  S  *  S  T  N  L  W  *  F  F  I  L  *  F  I  Y  Y  L  I  N  S  V  *  C  M  I  R  C  *  N  E  G  R  K  R  V  *  T  F  T  R  L  I  G  V  Q  N  L  P  Q  I  Q  N  A  N  V  E  S  L  S  T  R  E  D  L  E  K  D  D  E  D  R  I  V  V  E  Q  F  S  I  S  L  F  C  I  Y  S  S  F  L  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0116F10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="97571" PGL_stop="98972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97574" e_stop="98880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97574" e_stop="98880" e_length="1307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97574" stop="98188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97674" stop="98569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97982" stop="98803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98417" stop="98880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586703" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAAAGAATTAGACCCATGTTGTGTATAGCTGCTTGTGAGCTTGTTGGTGGGGTTGAGTCCACAGCCATGCCAGCAGCTTGTGCTGTTGAAATGATTCACACCATGTCTTTGATTCATGATGACCTTCCTTGTATGGATAATGATGATCTTAGAAGAGGGAAACCTACAAATCACAAGATTTATGGGGAGGATGTGGCTGTTTTAGCAGGGGATGCACTTCTTGCATTAGCCTTTGAGCACATTGCTACTCATACAAAAGGGGTTTCTTCTGATAGAATTGTGAGGGTGATTGGTGAGTTGGCGAAGTGTATTGGGGCAGAGGGACTTGTAGCTGGTCAGGTTGTAGATATAATTTCAGAAGGCATTTCTGATGTTGATTTGAAGCATTTAGAGTTCATTCATCTGCACAAGACTGCAGCTTTGTTAGAAGGGTCAGTGGTGCTAGGGGCTATATTAGGAGGTGCACCAGATGAAGATGTGGAAAAGCTAAGAAAATTTGCAAGATGTATTGGTTTGTTATTTCAAGTTGTGGATGATATTCTTGATGTCACAAAGTCTTCTCAGCAATTGGGGAAAACAGCTGGGAAGGACTTGGTTGCTGATAAGGTAACTTATCCCAAACTGATAGGTATTGAGAAATCTAGGGAGTTTGCTGAGGAGTTAAACAAAGAAGCGAAAGCTCAGCTTGTTGGATTTGATCAAGAGAAAGCAGCTCCATTGTTTGCTCTTGCAAATTATATTGCTTACAGAGAGAATTAAATTGTAACAACAGAATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTAAGTACAAGGCAAGGACATGAGTGTG</gDNA_template>
            <first_frame> V  E  T  S  V  Q  L  R  I  S  *  T  C  N  L  L  L  L  H  L  S  L  R  N  L  I  N  *  E  I  R  S  K  E  *  V  F  Q  Q  Q  L  Q  L  G  D  T  P  I  I  P  F  L  T  L  E  I  K  A  D  P  D  F  A  L  Q  D  S  C  L  I  *  R  *  N  S  S  L  T  L  L  L  F  L  S  Q  L  F  L  Q  R  S  K  K  A  R  A  R  N  K  Q  W  S  L  K  N  T  F  L  K  R  L  F  L  S  T  R  L  W  N  L  Q  S  L  S  R  N  R  S  *  F  M  S  P  *  G  T  L  F  L  L  V  G  K  E  L  D  P  C  C  V  *  L  L  V  S  L  L  V  G  L  S  P  Q  P  C  Q  Q  L  V  L  L  K  *  F  T  P  C  L  *  F  M  M  T  F  L  V  W  I  M  M  I  L  E  E  G  N  L  Q  I  T  R  F  M  G  R  M  W  L  F  *  Q  G  M  H  F  L  H  *  P  L  S  T  L  L  L  I  Q  K  G  F  L  L  I  E  L  *  G  *  L  V  S  W  R  S  V  L  G  Q  R  D  L  *  L  V  R  L  *  I  *  F  Q  K  A  F  L  M  L  I  *  S  I  *  S  S  F  I  C  T  R  L  Q  L  C  *  K  G  Q  W  C  *  G  L  Y  *  E  V  H  Q  M  K  M  W  K  S  *  E  N  L  Q  D  V  L  V  C  Y  F  K  L  W  M  I  F  L  M  S  Q  S  L  L  S  N  W  G  K  Q  L  G  R  T  W  L  L  I  R  *  L  I  P  N  *  *  V  L  R  N  L  G  S  L  L  R  S  *  T  K  K  R  K  L  S  L  L  D  L  I  K  R  K  Q  L  H  C  L  L  L  Q  I  I  L  L  T  E  R  I  K  L  *  Q  Q  N  S  Q  *  F  L  I  V  L  N  N  E  Y  M  N  F  W  S  T  N  L  Y  I  *  S  L  R  S  K  Y  K  A  R  T  *  V   </first_frame>
            <second_frame>  L  K  L  L  Y  S  F  G  Y  P  K  L  A  I  S  F  F  F  I  Y  L  C  E  T  *  L  T  E  K  L  G  R  K  N  E  S  F  N  N  N  Y  N  L  G  I  H  P  S  S  L  F  *  R  W  K  *  R  Q  I  Q  I  S  L  S  R  I  H  A  S  S  E  D  E  I  L  H  *  P  F  F  S  F  C  L  S  S  S  Y  K  G  A  R  K  Q  E  Q  E  T  S  N  G  V  *  R  I  R  S  *  K  G  C  F  C  Q  Q  G  F  G  I  C  S  L  Y  Q  G  T  G  H  D  S  *  V  H  E  V  L  S  S  C  W  W  E  K  N  *  T  H  V  V  Y  S  C  L  *  A  C  W  W  G  *  V  H  S  H  A  S  S  L  C  C  *  N  D  S  H  H  V  F  D  S  *  *  P  S  L  Y  G  *  *  *  S  *  K  R  E  T  Y  K  S  Q  D  L  W  G  G  C  G  C  F  S  R  G  C  T  S  C  I  S  L  *  A  H  C  Y  S  Y  K  R  G  F  F  *  *  N  C  E  G  D  W  *  V  G  E  V  Y  W  G  R  G  T  C  S  W  S  G  C  R  Y  N  F  R  R  H  F  *  C  *  F  E  A  F  R  V  H  S  S  A  Q  D  C  S  F  V  R  R  V  S  G  A  R  G  Y  I  R  R  C  T  R  *  R  C  G  K  A  K  K  I  C  K  M  Y  W  F  V  I  S  S  C  G  *  Y  S  *  C  H  K  V  F  S  A  I  G  E  N  S  W  E  G  L  G  C  *  *  G  N  L  S  Q  T  D  R  Y  *  E  I  *  G  V  C  *  G  V  K  Q  R  S  E  S  S  A  C  W  I  *  S  R  E  S  S  S  I  V  C  S  C  K  L  Y  C  L  Q  R  E  L  N  C  N  N  R  I  L  S  D  S  *  *  Y  *  T  M  N  I  *  I  F  G  Q  P  I  C  I  F  K  V  *  E  V  S  T  R  Q  G  H  E  C  </second_frame>
            <third_frame>   *  N  F  C  T  A  S  D  I  L  N  L  Q  S  P  S  S  S  S  I  F  A  K  P  N  *  L  R  N  *  V  E  R  M  S  L  S  T  T  I  T  T  W  G  Y  T  H  H  P  F  S  D  V  G  N  K  G  R  S  R  F  R  S  P  G  F  M  P  H  L  K  M  K  F  F  T  N  P  S  S  L  S  V  S  A  L  L  T  K  E  Q  E  S  K  S  K  K  Q  A  M  E  F  K  E  Y  V  L  E  K  A  V  S  V  N  K  A  L  E  S  A  V  S  I  K  E  P  V  M  I  H  E  S  M  R  Y  S  L  L  A  G  G  K  R  I  R  P  M  L  C  I  A  A  C  E  L  V  G  G  V  E  S  T  A  M  P  A  A  C  A  V  E  M  I  H  T  M  S  L  I  H  D  D  L  P  C  M  D  N  D  D  L  R  R  G  K  P  T  N  H  K  I  Y  G  E  D  V  A  V  L  A  G  D  A  L  L  A  L  A  F  E  H  I  A  T  H  T  K  G  V  S  S  D  R  I  V  R  V  I  G  E  L  A  K  C  I  G  A  E  G  L  V  A  G  Q  V  V  D  I  I  S  E  G  I  S  D  V  D  L  K  H  L  E  F  I  H  L  H  K  T  A  A  L  L  E  G  S  V  V  L  G  A  I  L  G  G  A  P  D  E  D  V  E  K  L  R  K  F  A  R  C  I  G  L  L  F  Q  V  V  D  D  I  L  D  V  T  K  S  S  Q  Q  L  G  K  T  A  G  K  D  L  V  A  D  K  V  T  Y  P  K  L  I  G  I  E  K  S  R  E  F  A  E  E  L  N  K  E  A  K  A  Q  L  V  G  F  D  Q  E  K  A  A  P  L  F  A  L  A  N  Y  I  A  Y  R  E  N  *  I  V  T  T  E  F  S  V  I  P  D  S  I  K  Q  *  I  Y  E  F  L  V  N  Q  F  V  Y  L  K  F  K  K  *  V  Q  G  K  D  M  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97666" stop="98757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERMSLSTTITTWGYTHHPFSDVGNKGRSRFRSPGFMPHLKMKFFTNPSSLSVSALLTKEQESKSKKQAMEFKEYVLEKAVSVNKALESAVSIKEPVMIHESMRYSLLAGGKRIRPMLCIAACELVGGVESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDALLALAFEHIATHTKGVSSDRIVRVIGELAKCIGAEGLVAGQVVDIISEGISDVDLKHLEFIHLHKTAALLEGSVVLGAILGGAPDEDVEKLRKFARCIGLLFQVVDDILDVTKSSQQLGKTAGKDLVADKVTYPKLIGIEKSREFAEELNKEAKAQLVGFDQEKAAPLFALANYIAYREN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97571" e_stop="98001"/>
            <exon e_start="98750" e_stop="98972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97571" e_stop="98001" e_length="431"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98002" i_stop="98749" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98750" e_stop="98972" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97571" stop="98001"/>
              <exon start="98750" stop="98972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGTTGAAACTTCTGTACAGCTTCGGATATCCTAAACTTGCAATCTCCTTCTTCTTCATCTATCTTTGCGAAACCTAATTAACTGAGAAATTAGGTCGAAAGAATGAGTCTTTCAACAACAATTACAACTTGGGGATACACCCATCATCCCTTTTCTGACGTTGGAAATAAAGGCAGATCCAGATTTCGCTCTCCAGGATTCATGCCTCATCTGAAGATGAAATTCTTCACTAACCCTTCTTCTCTTTCTGTCTCAGCTCTTCTTACAAAGGAGCAAGAAAGCAAGAGCAAGAAACAAGCAATGGAGTTTAAAGAATACGTTCTTGAAAAGGCTGTTTCTGTCAACAAGGCTTTGGAATCTGCAGTCTCTATCAAGGAACCGGTCATGATTCATGAGTCCATGAGGTACTCTCTTCTTGCTGGTGGGAAA : AGAATTAAATTGTAACAACAGAATTCTCAGTGATTCCTGATAGTATTAAACAATGAATATATGAATTTTTGGTCAACCAATTTGTATATTTAAAGTTTAAGAAGTAAGTACAAGGCAAGGACATGAGTGTGTACATTTAAAGATTCAAACTTCTAACATCTTGAATGAAATAATGGCCCATACACGTTTCTATTCTTCTTCTCCTTATGATACTCTTCAACTG</gDNA_template>
            <first_frame> N  V  E  T  S  V  Q  L  R  I  S  *  T  C  N  L  L  L  L  H  L  S  L  R  N  L  I  N  *  E  I  R  S  K  E  *  V  F  Q  Q  Q  L  Q  L  G  D  T  P  I  I  P  F  L  T  L  E  I  K  A  D  P  D  F  A  L  Q  D  S  C  L  I  *  R  *  N  S  S  L  T  L  L  L  F  L  S  Q  L  F  L  Q  R  S  K  K  A  R  A  R  N  K  Q  W  S  L  K  N  T  F  L  K  R  L  F  L  S  T  R  L  W  N  L  Q  S  L  S  R  N  R  S  *  F  M  S  P  *  G  T  L  F  L  L  V  G  K :   E  L  N  C  N  N  R  I  L  S  D  S  *  *  Y  *  T  M  N  I  *  I  F  G  Q  P  I  C  I  F  K  V  *  E  V  S  T  R  Q  G  H  E  C  V  H  L  K  I  Q  T  S  N  I  L  N  E  I  M  A  H  T  R  F  Y  S  S  S  P  Y  D  T  L  Q  L </first_frame>
            <second_frame>  M  L  K  L  L  Y  S  F  G  Y  P  K  L  A  I  S  F  F  F  I  Y  L  C  E  T  *  L  T  E  K  L  G  R  K  N  E  S  F  N  N  N  Y  N  L  G  I  H  P  S  S  L  F  *  R  W  K  *  R  Q  I  Q  I  S  L  S  R  I  H  A  S  S  E  D  E  I  L  H  *  P  F  F  S  F  C  L  S  S  S  Y  K  G  A  R  K  Q  E  Q  E  T  S  N  G  V  *  R  I  R  S  *  K  G  C  F  C  Q  Q  G  F  G  I  C  S  L  Y  Q  G  T  G  H  D  S  *  V  H  E  V  L  S  S  C  W  W  E   : K  N  *  I  V  T  T  E  F  S  V  I  P  D  S  I  K  Q  *  I  Y  E  F  L  V  N  Q  F  V  Y  L  K  F  K  K  *  V  Q  G  K  D  M  S  V  Y  I  *  R  F  K  L  L  T  S  *  M  K  *  W  P  I  H  V  S  I  L  L  L  L  M  I  L  F  N   </second_frame>
            <third_frame>   C  *  N  F  C  T  A  S  D  I  L  N  L  Q  S  P  S  S  S  S  I  F  A  K  P  N  *  L  R  N  *  V  E  R  M  S  L  S  T  T  I  T  T  W  G  Y  T  H  H  P  F  S  D  V  G  N  K  G  R  S  R  F  R  S  P  G  F  M  P  H  L  K  M  K  F  F  T  N  P  S  S  L  S  V  S  A  L  L  T  K  E  Q  E  S  K  S  K  K  Q  A  M  E  F  K  E  Y  V  L  E  K  A  V  S  V  N  K  A  L  E  S  A  V  S  I  K  E  P  V  M  I  H  E  S  M  R  Y  S  L  L  A  G  G  K  :  R  I  K  L  *  Q  Q  N  S  Q  *  F  L  I  V  L  N  N  E  Y  M  N  F  W  S  T  N  L  Y  I  *  S  L  R  S  K  Y  K  A  R  T  *  V  C  T  F  K  D  S  N  F  *  H  L  E  *  N  N  G  P  Y  T  F  L  F  F  F  S  L  *  Y  S  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97666" stop="98001"/>
                    <exon start="98750" stop="98764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERMSLSTTITTWGYTHHPFSDVGNKGRSRFRSPGFMPHLKMKFFTNPSSLSVSALLTKEQESKSKKQAMEFKEYVLEKAVSVNKALESAVSIKEPVMIHESMRYSLLAGGKRIKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99562" PGL_stop="100257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99562" e_stop="100257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="99562" e_stop="100257" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99562" stop="100257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTTTCGCTTGAATGCTTGTTCCTCAGTAAGTCAAATAGGAAATCACCAAATCAGGGAGTAATCCACACTTTAAGAGTCATGTCTATGCTAAAAAGAGTAATCTACAATCTTGTGAAACTGAGTACAAGAGGCACTCCAAATAGATCCAGATCTGCAGGAACAAAGTTGCTTCTTTCTTCAGAGGAAACGGCAGAGGTTATATTCCGGCCAAAAGCAAGAGCCTTTTGTAATAGCACAGGTTTTTCCAAGAATGAAAGTGAAGTTATCAACCATGAAGACATACTCGGAGAAGCTGGAAAAACAACAAGTGTCTTTGATTTCAAAAGTTACATGGTTCAAAAGATCAAATCCATCAATCAAGCCTTAGATGCTGCTGTTCCAATCAGTGAGCCTATCAAGTTCCATGAAGCAATGAGATACTCACTCCTTTCTGAAGGCAAGCGGATTTGTCCTGTACTCTGTATAGCCGCCTGTGAGCTTGTTGGTGGCCAAGAATCAACAGCAATGCCTGCTGCTTGTGGAATGGAGATGATACATGCTATGTGTATGATGCACGACGACCTTCCCTGCATGGACAACGATGATCTCCGTCGAGGAAAACTGTCACATCACAAGGTTTATGGCGAAAATGTCACTGTTTTAGCTGGTTATTCCCTTGTTGCCTTAGCATTTCAGCATATGACAACAGCCACT</gDNA_template>
            <first_frame> L  L  S  L  E  C  L  F  L  S  K  S  N  R  K  S  P  N  Q  G  V  I  H  T  L  R  V  M  S  M  L  K  R  V  I  Y  N  L  V  K  L  S  T  R  G  T  P  N  R  S  R  S  A  G  T  K  L  L  L  S  S  E  E  T  A  E  V  I  F  R  P  K  A  R  A  F  C  N  S  T  G  F  S  K  N  E  S  E  V  I  N  H  E  D  I  L  G  E  A  G  K  T  T  S  V  F  D  F  K  S  Y  M  V  Q  K  I  K  S  I  N  Q  A  L  D  A  A  V  P  I  S  E  P  I  K  F  H  E  A  M  R  Y  S  L  L  S  E  G  K  R  I  C  P  V  L  C  I  A  A  C  E  L  V  G  G  Q  E  S  T  A  M  P  A  A  C  G  M  E  M  I  H  A  M  C  M  M  H  D  D  L  P  C  M  D  N  D  D  L  R  R  G  K  L  S  H  H  K  V  Y  G  E  N  V  T  V  L  A  G  Y  S  L  V  A  L  A  F  Q  H  M  T  T  A  T </first_frame>
            <second_frame>  C  F  R  L  N  A  C  S  S  V  S  Q  I  G  N  H  Q  I  R  E  *  S  T  L  *  E  S  C  L  C  *  K  E  *  S  T  I  L  *  N  *  V  Q  E  A  L  Q  I  D  P  D  L  Q  E  Q  S  C  F  F  L  Q  R  K  R  Q  R  L  Y  S  G  Q  K  Q  E  P  F  V  I  A  Q  V  F  P  R  M  K  V  K  L  S  T  M  K  T  Y  S  E  K  L  E  K  Q  Q  V  S  L  I  S  K  V  T  W  F  K  R  S  N  P  S  I  K  P  *  M  L  L  F  Q  S  V  S  L  S  S  S  M  K  Q  *  D  T  H  S  F  L  K  A  S  G  F  V  L  Y  S  V  *  P  P  V  S  L  L  V  A  K  N  Q  Q  Q  C  L  L  L  V  E  W  R  *  Y  M  L  C  V  *  C  T  T  T  F  P  A  W  T  T  M  I  S  V  E  E  N  C  H  I  T  R  F  M  A  K  M  S  L  F  *  L  V  I  P  L  L  P  *  H  F  S  I  *  Q  Q  P   </second_frame>
            <third_frame>   A  F  A  *  M  L  V  P  Q  *  V  K  *  E  I  T  K  S  G  S  N  P  H  F  K  S  H  V  Y  A  K  K  S  N  L  Q  S  C  E  T  E  Y  K  R  H  S  K  *  I  Q  I  C  R  N  K  V  A  S  F  F  R  G  N  G  R  G  Y  I  P  A  K  S  K  S  L  L  *  *  H  R  F  F  Q  E  *  K  *  S  Y  Q  P  *  R  H  T  R  R  S  W  K  N  N  K  C  L  *  F  Q  K  L  H  G  S  K  D  Q  I  H  Q  S  S  L  R  C  C  C  S  N  Q  *  A  Y  Q  V  P  *  S  N  E  I  L  T  P  F  *  R  Q  A  D  L  S  C  T  L  Y  S  R  L  *  A  C  W  W  P  R  I  N  S  N  A  C  C  L  W  N  G  D  D  T  C  Y  V  Y  D  A  R  R  P  S  L  H  G  Q  R  *  S  P  S  R  K  T  V  T  S  Q  G  L  W  R  K  C  H  C  F  S  W  L  F  P  C  C  L  S  I  S  A  Y  D  N  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99562" stop="100257"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSLECLFLSKSNRKSPNQGVIHTLRVMSMLKRVIYNLVKLSTRGTPNRSRSAGTKLLLSSEETAEVIFRPKARAFCNSTGFSKNESEVINHEDILGEAGKTTSVFDFKSYMVQKIKSINQALDAAVPISEPIKFHEAMRYSLLSEGKRICPVLCIAACELVGGQESTAMPAACGMEMIHAMCMMHDDLPCMDNDDLRRGKLSHHKVYGENVTVLAGYSLVALAFQHMTTAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="107076" PGL_stop="108328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107076" e_stop="107349"/>
            <exon e_start="107438" e_stop="107559"/>
            <exon e_start="107641" e_stop="108328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107076" e_stop="107349" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="107350" i_stop="107437" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107438" e_stop="107559" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="107641" e_stop="108328" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107076" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107076" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107080" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107085" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107085" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107085" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107086" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107086" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107089" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107089" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107091" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107093" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107119" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107119" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107119" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107120" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107125" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107139" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107139" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107219" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107222" stop="107349"/>
              <exon start="107438" stop="107541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107229" stop="107349"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="108279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107439" stop="107559"/>
              <exon start="107641" stop="108193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107651" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107680" stop="108241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107712" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107737" stop="108129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107820" stop="108112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCAACAACAACCTCATTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACA : CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG : CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAAAAATTATTTGGTAATGAATTCAAGGAC</gDNA_template>
            <first_frame> Y  Q  Q  Q  P  H  L  S  L  L  F  *  P  L  E  P  T  N  C  S  A  M  A  T  V  S  S  A  S  A  A  L  R  T  I  S  S  S  S  S  K  L  S  S  A  F  Q  T  K  K  I  Q  S  F  K  L  P  N  P  L  I  S  Q  N  H  K  L  T  T  T  S  T  T  A  S  R  S  F  S  C  K  S  Q  S  T  S  T  D  S  T  N   : T  E  V  Q  E  L  S  V  Y  E  I  N  E  R  D  R  G  S  P  A  Y  L  R  L  S  Q  K  T  V  N  S  L  G  D  L  V  P  F  S  N  K  :  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  K  I  I  W  *  *  I  Q  G  </first_frame>
            <second_frame>  I  N  N  N  L  I  *  V  F  F  F  D  R  *  N  Q  Q  I  V  Q  Q  W  P  L  F  P  Q  P  L  L  L  L  E  P  F  L  L  P  H  P  S  Y  L  L  P  S  K  L  K  R  S  N  L  L  N  Y  L  T  L  S  F  L  R  I  I  N  L  L  P  P  L  L  L  L  P  D  H  F  P  A  R  A  R  A  P  Q  Q  I  Q  L  T  :  L  K  F  K  N  L  V  S  M  R  S  M  N  V  I  V  E  A  L  L  I  F  D  *  A  K  R  L  L  I  H  S  E  I  L  S  P  L  A  T  S :   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K  K  L  F  G  N  E  F  K  D </second_frame>
            <third_frame>   S  T  T  T  S  F  K  S  S  F  L  T  A  R  T  N  K  L  F  S  N  G  H  C  F  L  S  L  C  C  S  *  N  H  F  F  F  L  I  Q  A  I  F  C  L  P  N  *  K  D  P  I  F  *  T  T  *  P  S  H  F  S  E  S  *  T  Y  Y  H  L  Y  Y  C  F  Q  I  I  F  L  Q  E  P  E  H  L  N  R  F  N  *  H :   *  S  S  R  T  *  C  L  *  D  Q  *  T  *  S  W  K  P  C  L  S  S  I  E  P  K  D  C  *  F  T  R  R  S  C  P  L  *  Q  Q   : A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *  K  N  Y  L  V  M  N  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107112" stop="107349"/>
                    <exon start="107438" stop="107559"/>
                    <exon start="107641" stop="108042"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLEPTNCSAMATVSSASAALRTISSSSSKLSSAFQTKKIQSFKLPNPLISQNHKLTTTSTTASRSFSCKSQSTSTDSTNTEVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="107093" e_stop="107358"/>
            <exon e_start="107438" e_stop="107559"/>
            <exon e_start="107641" e_stop="108301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107093" e_stop="107358" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.985">
            <gDNA_intron_boundary i_start="107359" i_stop="107437" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107438" e_stop="107559" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="107560" i_stop="107640" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="107641" e_stop="108301" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107093" stop="107358"/>
              <exon start="107438" stop="107559"/>
              <exon start="107641" stop="107821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107439" stop="107559"/>
              <exon start="107641" stop="108193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107651" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107680" stop="108241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107712" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107737" stop="108129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107820" stop="108112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAAGTCTTCTTTTTTGACCGCTAGAACCAACAAATTGTTCAGCAATGGCCACTGTTTCCTCAGCCTCTGCTGCTCTTAGAACCATTTCTTCTTCCTCATCCAAGCTATCTTCTGCCTTCCAAACTAAAAAGATCCAATCTTTTAAACTACCTAACCCTCTCATTTCTCAGAATCATAAACTTACTACCACCTCTACTACTGCTTCCAGATCATTTTCCTGCAAGAGCCAGAGCACCTCAACAGATTCAACTAACAGTAAGAAAA : CTGAAGTTCAAGAACTTAGTGTCTATGAGATCAATGAACGTGATCGTGGAAGCCCTGCTTATCTTCGATTGAGCCAAAAGACTGTTAATTCACTCGGAGATCTTGTCCCCTTTAGCAACAAG : CTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</gDNA_template>
            <first_frame> F  K  S  S  F  L  T  A  R  T  N  K  L  F  S  N  G  H  C  F  L  S  L  C  C  S  *  N  H  F  F  F  L  I  Q  A  I  F  C  L  P  N  *  K  D  P  I  F  *  T  T  *  P  S  H  F  S  E  S  *  T  Y  Y  H  L  Y  Y  C  F  Q  I  I  F  L  Q  E  P  E  H  L  N  R  F  N  *  Q  *  E  N :   *  S  S  R  T  *  C  L  *  D  Q  *  T  *  S  W  K  P  C  L  S  S  I  E  P  K  D  C  *  F  T  R  R  S  C  P  L  *  Q  Q   : A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *   </first_frame>
            <second_frame>  L  S  L  L  F  *  P  L  E  P  T  N  C  S  A  M  A  T  V  S  S  A  S  A  A  L  R  T  I  S  S  S  S  S  K  L  S  S  A  F  Q  T  K  K  I  Q  S  F  K  L  P  N  P  L  I  S  Q  N  H  K  L  T  T  T  S  T  T  A  S  R  S  F  S  C  K  S  Q  S  T  S  T  D  S  T  N  S  K  K   : T  E  V  Q  E  L  S  V  Y  E  I  N  E  R  D  R  G  S  P  A  Y  L  R  L  S  Q  K  T  V  N  S  L  G  D  L  V  P  F  S  N  K  :  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  </second_frame>
            <third_frame>   *  V  F  F  F  D  R  *  N  Q  Q  I  V  Q  Q  W  P  L  F  P  Q  P  L  L  L  L  E  P  F  L  L  P  H  P  S  Y  L  L  P  S  K  L  K  R  S  N  L  L  N  Y  L  T  L  S  F  L  R  I  I  N  L  L  P  P  L  L  L  L  P  D  H  F  P  A  R  A  R  A  P  Q  Q  I  Q  L  T  V  R  K  :  L  K  F  K  N  L  V  S  M  R  S  M  N  V  I  V  E  A  L  L  I  F  D  *  A  K  R  L  L  I  H  S  E  I  L  S  P  L  A  T  S :   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107112" stop="107358"/>
                    <exon start="107438" stop="107559"/>
                    <exon start="107641" stop="108042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLEPTNCSAMATVSSASAALRTISSSSSKLSSAFQTKKIQSFKLPNPLISQNHKLTTTSTTASRSFSCKSQSTSTDSTNSKKTEVQELSVYEINERDRGSPAYLRLSQKTVNSLGDLVPFSNKLYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="107640" e_stop="108301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="107640" e_stop="108301" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107640" stop="108241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107651" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107680" stop="108241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107712" stop="108301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107737" stop="108129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107820" stop="108112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTATATACTGCAGATCTAAAGAAGAGAATTGGAATAACAGCAGGACTCTGCATTCTGATCAAGCACGAAGAAGAGAAGAAAGGAGATCGCTATGAAGCTGTTTACAGCTTCTACTTCGGCGATTACGGTCATATCGCCGTTCAGGGAGCGTACTTAACCTATGAAGAAACTTACCTAGCCGTCACCGGTGGATCCGGCATATTTGCAGGGGTTTCCGGTCAAGTGAAATTGCAGCAACTCATTTTCCCTTTCAAGCTATTTTACACTTTTTACTTGAAGGGGATCCCCGGTCTGCCATCTGAATTGTTGTGTACGGCGGTTCCTCCGTCGCCGACGGTGGAGCCAACACCTGAAGCTAAAGCTTGTGAGGAAGGGGCCGCACTGAAAAATTACACTAATTAAGTGGGGGTGTTGATGTGCAAATCACAACTTTTGTTGGGGTCGTTCTGAAATAATCAATAACTACGTGCTCTAGAATTAAAAAAAAAAGTAACATCAACGTCCTTTTATTTTGCAATTTTTGGTATGTTATTTGTCGTTTTGTTGGGTAAAAGTTTAACTGTTTTGTTAGTACTTTGTATGTATGCCTATTATCTGAATTGTATCCCTATGTGATACGTTCCATCTTTATTATAAAGTCCAGAAAAAGATAAAAATGAAA</gDNA_template>
            <first_frame> A  I  Y  C  R  S  K  E  E  N  W  N  N  S  R  T  L  H  S  D  Q  A  R  R  R  E  E  R  R  S  L  *  S  C  L  Q  L  L  L  R  R  L  R  S  Y  R  R  S  G  S  V  L  N  L  *  R  N  L  P  S  R  H  R  W  I  R  H  I  C  R  G  F  R  S  S  E  I  A  A  T  H  F  P  F  Q  A  I  L  H  F  L  L  E  G  D  P  R  S  A  I  *  I  V  V  Y  G  G  S  S  V  A  D  G  G  A  N  T  *  S  *  S  L  *  G  R  G  R  T  E  K  L  H  *  L  S  G  G  V  D  V  Q  I  T  T  F  V  G  V  V  L  K  *  S  I  T  T  C  S  R  I  K  K  K  S  N  I  N  V  L  L  F  C  N  F  W  Y  V  I  C  R  F  V  G  *  K  F  N  C  F  V  S  T  L  Y  V  C  L  L  S  E  L  Y  P  Y  V  I  R  S  I  F  I  I  K  S  R  K  R  *  K  *   </first_frame>
            <second_frame>  L  Y  T  A  D  L  K  K  R  I  G  I  T  A  G  L  C  I  L  I  K  H  E  E  E  K  K  G  D  R  Y  E  A  V  Y  S  F  Y  F  G  D  Y  G  H  I  A  V  Q  G  A  Y  L  T  Y  E  E  T  Y  L  A  V  T  G  G  S  G  I  F  A  G  V  S  G  Q  V  K  L  Q  Q  L  I  F  P  F  K  L  F  Y  T  F  Y  L  K  G  I  P  G  L  P  S  E  L  L  C  T  A  V  P  P  S  P  T  V  E  P  T  P  E  A  K  A  C  E  E  G  A  A  L  K  N  Y  T  N  *  V  G  V  L  M  C  K  S  Q  L  L  L  G  S  F  *  N  N  Q  *  L  R  A  L  E  L  K  K  K  V  T  S  T  S  F  Y  F  A  I  F  G  M  L  F  V  V  L  L  G  K  S  L  T  V  L  L  V  L  C  M  Y  A  Y  Y  L  N  C  I  P  M  *  Y  V  P  S  L  L  *  S  P  E  K  D  K  N  E  </second_frame>
            <third_frame>   Y  I  L  Q  I  *  R  R  E  L  E  *  Q  Q  D  S  A  F  *  S  S  T  K  K  R  R  K  E  I  A  M  K  L  F  T  A  S  T  S  A  I  T  V  I  S  P  F  R  E  R  T  *  P  M  K  K  L  T  *  P  S  P  V  D  P  A  Y  L  Q  G  F  P  V  K  *  N  C  S  N  S  F  S  L  S  S  Y  F  T  L  F  T  *  R  G  S  P  V  C  H  L  N  C  C  V  R  R  F  L  R  R  R  R  W  S  Q  H  L  K  L  K  L  V  R  K  G  P  H  *  K  I  T  L  I  K  W  G  C  *  C  A  N  H  N  F  C  W  G  R  S  E  I  I  N  N  Y  V  L  *  N  *  K  K  K  *  H  Q  R  P  F  I  L  Q  F  L  V  C  Y  L  S  F  C  W  V  K  V  *  L  F  C  *  Y  F  V  C  M  P  I  I  *  I  V  S  L  C  D  T  F  H  L  Y  Y  K  V  Q  K  K  I  K  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107641" stop="108042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYTADLKKRIGITAGLCILIKHEEEKKGDRYEAVYSFYFGDYGHIAVQGAYLTYEETYLAVTGGSGIFAGVSGQVKLQQLIFPFKLFYTFYLKGIPGLPSELLCTAVPPSPTVEPTPEAKACEEGAALKNYTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="108455" PGL_stop="107832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108455" e_stop="107832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="108455" e_stop="107832" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108455" stop="107941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108289" stop="107832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGTTGCGGTGAGGTCTTGGATTCAAGCCCTTCAGAGCATAGTGGTCTCAATTTCGATCTCTTTGGATATGAAATCTCCTTTGTAAGGGAGAACTCTATGGTTCAAATAGTTATCGAACAAATACGTCCTTGAATTCATTACCAAATAATTTTTTCATTTTTATCTTTTTCTGGACTTTATAATAAAGATGGAACGTATCACATAGGGATACAATTCAGATAATAGGCATACATACAAAGTACTAACAAAACAGTTAAACTTTTACCCAACAAAACGACAAATAACATACCAAAAATTGCAAAATAAAAGGACGTTGATGTTACTTTTTTTTTTAATTCTAGAGCACGTAGTTATTGATTATTTCAGAACGACCCCAACAAAAGTTGTGATTTGCACATCAACACCCCCACTTAATTAGTGTAATTTTTCAGTGCGGCCCCTTCCTCACAAGCTTTAGCTTCAGGTGTTGGCTCCACCGTCGGCGACGGAGGAACCGCCGTACACAACAATTCAGATGGCAGACCGGGGATCCCCTTCAAGTAAAAAGTGTAAAATAGCTTGAAAGGGAAAATGAGTTGCTGCAATTTCACTTGACCGGAAACCCCTGCAAATATGCCGGAT</gDNA_template>
            <first_frame> E  G  C  G  E  V  L  D  S  S  P  S  E  H  S  G  L  N  F  D  L  F  G  Y  E  I  S  F  V  R  E  N  S  M  V  Q  I  V  I  E  Q  I  R  P  *  I  H  Y  Q  I  I  F  S  F  L  S  F  S  G  L  Y  N  K  D  G  T  Y  H  I  G  I  Q  F  R  *  *  A  Y  I  Q  S  T  N  K  T  V  K  L  L  P  N  K  T  T  N  N  I  P  K  I  A  K  *  K  D  V  D  V  T  F  F  F  N  S  R  A  R  S  Y  *  L  F  Q  N  D  P  N  K  S  C  D  L  H  I  N  T  P  T  *  L  V  *  F  F  S  A  A  P  S  S  Q  A  L  A  S  G  V  G  S  T  V  G  D  G  G  T  A  V  H  N  N  S  D  G  R  P  G  I  P  F  K  *  K  V  *  N  S  L  K  G  K  M  S  C  C  N  F  T  *  P  E  T  P  A  N  M  P  D </first_frame>
            <second_frame>  R  V  A  V  R  S  W  I  Q  A  L  Q  S  I  V  V  S  I  S  I  S  L  D  M  K  S  P  L  *  G  R  T  L  W  F  K  *  L  S  N  K  Y  V  L  E  F  I  T  K  *  F  F  H  F  Y  L  F  L  D  F  I  I  K  M  E  R  I  T  *  G  Y  N  S  D  N  R  H  T  Y  K  V  L  T  K  Q  L  N  F  Y  P  T  K  R  Q  I  T  Y  Q  K  L  Q  N  K  R  T  L  M  L  L  F  F  L  I  L  E  H  V  V  I  D  Y  F  R  T  T  P  T  K  V  V  I  C  T  S  T  P  P  L  N  *  C  N  F  S  V  R  P  L  P  H  K  L  *  L  Q  V  L  A  P  P  S  A  T  E  E  P  P  Y  T  T  I  Q  M  A  D  R  G  S  P  S  S  K  K  C  K  I  A  *  K  G  K  *  V  A  A  I  S  L  D  R  K  P  L  Q  I  C  R   </second_frame>
            <third_frame>   G  L  R  *  G  L  G  F  K  P  F  R  A  *  W  S  Q  F  R  S  L  W  I  *  N  L  L  C  K  G  E  L  Y  G  S  N  S  Y  R  T  N  T  S  L  N  S  L  P  N  N  F  F  I  F  I  F  F  W  T  L  *  *  R  W  N  V  S  H  R  D  T  I  Q  I  I  G  I  H  T  K  Y  *  Q  N  S  *  T  F  T  Q  Q  N  D  K  *  H  T  K  N  C  K  I  K  G  R  *  C  Y  F  F  F  *  F  *  S  T  *  L  L  I  I  S  E  R  P  Q  Q  K  L  *  F  A  H  Q  H  P  H  L  I  S  V  I  F  Q  C  G  P  F  L  T  S  F  S  F  R  C  W  L  H  R  R  R  R  R  N  R  R  T  Q  Q  F  R  W  Q  T  G  D  P  L  Q  V  K  S  V  K  *  L  E  R  E  N  E  L  L  Q  F  H  L  T  G  N  P  C  K  Y  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0116F10.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108247" stop="108035"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYNSDNRHTYKVLTKQLNFYPTKRQITYQKLQNKRTLMLLFFLILEHVVIDYFRTTPTKVVICTSTPPLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 245 chains have been computed
$ 
$ memory statistics:
$ 315912 bytes spliced alignments in total
$ 99 spliced alignments have been stored
$ 3191 bytes was the average size of a spliced alignment
$ 24264 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1617 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 266 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:04:05
-->
