<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:05:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583756" ref_strand="+" ref_description="SGN-U583756 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|68449768|gb|AAY97871.1| (e_value=1e-43) ACI19; (*ATH) AT2G23790.1 (e_value=4e-34) | Symbol: None | expressed protein, contains Pfam domain, PF04678: Protein of unknown function, DUF607 | chr2:10132448-10134601 REVERSE | Aliases: F27L4.3, F27L4_3; ">
      <seq>ttctctttatctccgaaagcttcagagttagtttcttcgtctatcaatggcgttcaaaaaacttgtagctcaacgtcttttcgattcatacaaaattagtcgtccttccctatcaacatgccgtatttgttcctcaaccatgaccaaatcgatggcttctcctaatcctgaaaggatagccccagatcccggcgagggtgcttttttccgtcgatctctccaccgaagctctttgttccaatcattagcaacctcgtcggagctccggtcttttcccatcggtgaaaagctccgtcaggaattgagagggatggacattggtagagataggataagactggatgcactcatctcaccgccgcaacaaaaattgttgccggagattgagtcagaagccgaggaggagaaattcacggtggcggatgcaaagaaggttatgagattggcacaactggaggtggtgaaatcgaggctgaggcagatggagaatgactggatttcttttccggaattttttcagatctgcaatggcgcttcttcaaactccgatcaagccatagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggnncatttccaaacaccccaacttacaccattgaacacacccttnc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="8764" stop="10349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9064" g_stop="9697" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9698" i_stop="9934" i_length="237">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9935" g_stop="10049" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="749" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U583756" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9064" e_stop="9697"/>
          <exon e_start="9935" e_stop="10049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTATCTCCGAAAGCTTCAGAGTTAGTTTCTTCGTCTATCAATGGCGTTCAAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTC</genome_strand>
        <mrna_strand>TTCTCTTTATCTCCGAAAGCTTCAGAGTTAGTTTCTTCGTCTATCAATGGCGTTCAAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG.............................................................................................................................................................................................................................................GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGNNCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583755" ref_strand="+" ref_description="SGN-U583755 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>atagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgtgataaggcgcgtgaagtggagttctattgttttacccaagcattttggtcccttggtttgttgctacaggtggtgaaagccatggaaggcttaaggccaaggcctttggctcagccaaatggacccacaaatgatgaaagagttccacaaaggattgaaaagaaattcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="9320" stop="10897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9620" g_stop="9697" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9698" i_stop="9934" i_length="237">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9935" g_stop="10597" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="742" r_length="664" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U583755" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9620" e_stop="9697"/>
          <exon e_start="9935" e_stop="10597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAAT-GACCCACAAATGATGAAAGAGTTTCAACAAATGGATGAGAAGAAA-TCAGC</genome_strand>
        <mrna_strand>ATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG.............................................................................................................................................................................................................................................GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGGTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAAGGCCAAGGCCTTTGGCTCAGCCAAATGGACCCACAAATGATGAAAGAG-TTCCACAAAGGATTGAAAAGAAATTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603278" ref_strand="+" ref_description="SGN-U603278 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157335391|emb|CAO61221.1| (e_value=5e-77) unnamed; (*ATH) AT4G36830.1 (e_value=3e-75)  Symbol: None | GNS1/SUR4 membrane family protein, weak similarity to long chain polyunsaturated fatty acid elongation enzyme (Isochrysis galbana) GI:17226123; contains Pfam profile PF01151: GNS1/SUR4 family | chr4:17349488-17350384 FORWARD | Aliases... ; ">
      <seq>ggaacatttcactcaaagcctcgtaaaagaatcggagctactactggtgtaccaaaaagtctagcagtggaactacgcagtcttttgtgcaaaacacgttaattcattatcaactttctggcctttttaatttcaaatcatttctccatctcattgcaatttgttcgatgattcacatcgtgcgttattatctctcccagcacccttctgttgtaaattttcgttggagtcatagccaatcatggggtaacacgtggttcttcctcttcacctccattgctgcctatgttatcttctccctcttcctccacctttttctctgcctcctcttccgcaaccgccgtcctctccctctcggccctatccctgccgttcactccctctctatggtcctaatctccctcaccatcttcaccggcatactcctctccgccgccgctgaaatccgcgaaactcgatggttctggcgccgtaacaaaaccaccgctttccaatggctcctctgtttccctctcggcacgcgcccttccggacgtgtcttcttttggtcctacattttctacctatctcgcttcctccacacgctacgtactttcttctccattctccgtcgtcgaagactctccttctttcaactcttcaaccactccatactcatatttatgtccttcctgtggctagaattctcgcaatcgtttcaagtacttgcaatactatttacaacgcttttatattctgcggtttacggatacagattttggacggcgattggattgccaagcgcgtgtttcccctttgttgtaagctgtcagattctgttactgggatgtcacgttgtgtgccatgttggggtgcttttgctccatttcatgaaaggtgggtgtaacggaatgggggcatggctttttcattcagtgctcaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="21090" stop="19564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20791" g_stop="19864" g_length="928"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="928" r_length="928" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U603278" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>928</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20791" e_stop="19864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGTTACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATTGGGGCATGGCTTTTCAATTCAGTGCTCAATGCTGC</genome_strand>
        <mrna_strand>GGAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGATACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATGGGGGCATGGCTTTTTCATTCAGTGCTCAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577347" ref_strand="+" ref_description="SGN-U577347 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|68299223|emb|CAJ13712.1| (e_value=1e-99) putative zinc finger protein [Capsicum chinense]; (*ATH) AT1G19310.1 (e_value=2e-57) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr1:6676225-6677661 REVERSE | Aliases: F18O14.3, F18O14_3; (*SWP) sp|Q5ZIR9|RN185_CHICK (e_value=3e-25) RING finger protein 185 OS=Gallus gallus GN=RNF185; ">
      <seq>atttgaccgtctcccgggtataactgaaattagagatgaatttaggtaagaactctgggagatagacagggtgaaaagccctagattctttcttctatggagtcaatacttgttcaatactaataattgaagggctcaattaccgcattttagcttcgatccattcattgcctttgaatccccttgcttttcttctgaatcggttttgggtgtttgcaaacttctgatatttccaattcaaataaaactgagtgagatgcaggactcaactaccagggcatttgaaagctcttcttcttcctctggagatgggaacaatgatgctggtgattttgaatgcaacatatgttttgaattggcccaagatcccattgtgacactctgtggtcaccttttctgttggccatgtctgtatagatggttacgtcttcactcacagtgccatgaatgccctgtctgtaaggcacttattcaagaggagaagttagttccactttatggaagaggaagaacttctactgatccccgatcaaaaccaattcctggccttgaaattcctagtagacctgctggacaacgacctgaaactgctcctcaacctgaaccaaatcattttcctaatcatggatttgggcacatgggaggattgtttccaacagcaactgcaagatttggtaattttactatgtctgctggttttggtggattgctcccttcattgctcagcttccagtttcatggatttcctggtccgacagcatatcctaccgcatcaaatcaccattttggatatactcctgcatatcacgggccacatgttcgtaacgctcaagacactgctcaaggacaagcagatagcaatctcaagttaatgtttttacttgttggttttcttgtgctaatttatttgttaggctaaagaatggattcagtctatccctgatgctaatgttggctatcagattttgtgcatgtggatatgtcaattctgcactcaccttgaagttactactaactttggtgattttatagatgcgagcactctgttactttaatgtaacaagtttatatctgtgtaatgtgtatattttgtatacttaaagtggttctagctcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="22371" stop="25064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22671" g_stop="22872" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23849" g_stop="24764" g_length="916"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="1118" r_length="916" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U577347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1118</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22671" e_stop="22872"/>
          <exon e_start="23849" e_stop="24764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCGGTACGTTCATACATCCTAGAAGGCTTCTTCGTTTTAATTTTTTTTTTCAATTTGCATGTAAAATTTGATTTTTTTCTGATCTATTCTGTTTTTATGTAAATCGAAAATCTTTTCTCGATTGAAATCTTGATTTCTCAGAATCAAGATTACGGAGATTTTAGTTTTTACCTTTTTGTTGTTTGTGTAATAATTGAGGCGTTAAAGGCAAATAATTTTCCATGATTTGGGCCCGAATAATGAAATCTGAAATGAACATAAGATTGATATAGACGGTTTCAAGAAGTTTGGCATTGGAAATTATTTATTGCTTGTGCTGTCGTGACATAGGGTTTGATCAGATTTGAGGTTTCCGTTTAGTGCTGGTTTTTATCGTATATTATAACGTATGCGTAATTTTCCTTTTGGAAAAATGTTCGGCTTATGCAAAATCAGTTAGATCTACCATATGAGCAAGAGGTTATTACATTTAACTTTTTGTCATGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTGTATATATCCTTCATATGAGCAAGAGGTTATAGCATCTAACTTTTTGTCCTGTGGTCTTGAGATATCATTTTCTTGTCTTTTGTTTTTATATATCCTTGTGAAATATAGCAATACAAGGCGGAATGTAGCTTATTAGGAGAGTGTCTTGTTGATTTTTTTAATCCAAGGGTTTTAGAATGAAAATTTAGCTTGTTTTAGTTGAAAGAAAAGATACTATGTAAGAATTAAGGGAAAAATATATTCGTAGAGGAAAATGTCGTGATGGAAGTCATTCTGTCCTTGTAGTCGAAATAATGTATACTTGGTATGAACCTTTTCGGTTATTTGACATATTCATGGTGAATCATTTTTCTGCCATACCAAACACACTGTTTGAGGTGTATTTAAATGGAGAGTTGGTATTCCTTTTGCATCTGCTTTCATTCTTTTTGACCAACCCTTAATACTTTTATTTGTCAGGTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTT</genome_strand>
        <mrna_strand>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564039" ref_strand="+" ref_description="SGN-U564039 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157348202|emb|CAO22912.1| (e_value=4e-66) unnamed; (*ATH) AT1G19300.1 (e_value=2e-65) | Symbol: None | glycosyl transferase family 8 protein, contains Pfam profile: PF01501 Glycosyl transferase family 8 | chr1:6671128-6672644 REVERSE | Aliases: F18O14.2, F18O14_2; ">
      <seq>aaaacttaggggcacccccctctggttcttcattttctctttattatccacactaaatggtactgattctgcaatcactgacactgattccaattccagtctccattttaaagaagcgccgcagttctataattccccgagttgttcttcaattaattcttcagtaaatgtagctatgactcttgatatagcttatctcaggggatctatggctgctattctttcagtgctacaacactcttcttgcccagaaaacattgtattccattttgtctcttcttcatctgctgaatccacacatttgaacttgactattacgaaatcatttccgtatcttcaattcacaatttatccaattcaacatgttgcagccgtagcaggactaatttcaacctcaattcgctctgctttagattgtcctttaaattatgctcgcaattatcttgctgatctacttcctcaacaacttcaaaaggtggtttatcttgattcggaccttgttttagtagacgacattgctgaattagcagcaacgcctctaacaggggactctgttttagcagcacctgaatactgcaatgctaattttactacttacttcacgccgactttttggtcgaatccttctctttccttgacttttgcgaatcgaaatcggaggccttgttattttaatactggggtgatggttattgatctagagagatggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="28627" stop="29938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28926" g_stop="29638" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U564039" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28926" e_stop="29638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTAGGGGCACCCCCCTCTGGTTCTTCATTTTCTCTTTATTATCCACACTAAATGGTACTGATTCTGCAATCACTGACACTGATTCCAATTCCAGTCTCCATTTTAAAGAAGCGCCGCAGTTCTATAATTCCCCGAGTTGTTCTTCAATTAATTCTTCAGTAAATGTAGCTATGACTCTTGATATAGCTTATCTCAGGGGATCTATGGCTGCTATTCTTTCAGTGCTACAACACTCTTCTTGCCCAGAAAACATTGTATTCCATTTTGTCTCTTCTTCATCTGCTGAATCCACACATTTGAACTTGACTATTACGAAATCATTTCCGTATCTTCAATTCACAATTTATCCAATTCAACATGTTGCAGCCGTAGCAGGACTAATTTCAACCTCAATTCGCTCTGCTTTAGATTGTCCTTTAAATTATGCTCGCAATTATCTTGCTGATCTACTTCCTCAACAACTTCAAAAGGTGGTTTATCTTGATTCGGACCTTGTTTTAGTAGACGACATTGCTGAATTAGCAGCAACGCCTCTAACAGGGGACTCTGTTTTAGCAGCACCTGAATACTGCAATGCTAATTTTACTACTTACTTCACGCCGACTTTTTGGTCGAATCCTTCTCTTTCCTTGACTTTTGCGAATCGAAATCGGAGGCCTTGTTATTTTAATACTGGGGTGATGGTTATTGATCTAGAGAGATGGAGAG</genome_strand>
        <mrna_strand>AAAACTTAGGGGCACCCCCCTCTGGTTCTTCATTTTCTCTTTATTATCCACACTAAATGGTACTGATTCTGCAATCACTGACACTGATTCCAATTCCAGTCTCCATTTTAAAGAAGCGCCGCAGTTCTATAATTCCCCGAGTTGTTCTTCAATTAATTCTTCAGTAAATGTAGCTATGACTCTTGATATAGCTTATCTCAGGGGATCTATGGCTGCTATTCTTTCAGTGCTACAACACTCTTCTTGCCCAGAAAACATTGTATTCCATTTTGTCTCTTCTTCATCTGCTGAATCCACACATTTGAACTTGACTATTACGAAATCATTTCCGTATCTTCAATTCACAATTTATCCAATTCAACATGTTGCAGCCGTAGCAGGACTAATTTCAACCTCAATTCGCTCTGCTTTAGATTGTCCTTTAAATTATGCTCGCAATTATCTTGCTGATCTACTTCCTCAACAACTTCAAAAGGTGGTTTATCTTGATTCGGACCTTGTTTTAGTAGACGACATTGCTGAATTAGCAGCAACGCCTCTAACAGGGGACTCTGTTTTAGCAGCACCTGAATACTGCAATGCTAATTTTACTACTTACTTCACGCCGACTTTTTGGTCGAATCCTTCTCTTTCCTTGACTTTTGCGAATCGAAATCGGAGGCCTTGTTATTTTAATACTGGGGTGATGGTTATTGATCTAGAGAGATGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586574" ref_strand="+" ref_description="SGN-U586574 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147797330|emb|CAN76003.1| (e_value=6e-97) hypothetical; (*ATH) AT1G19690.1 (e_value=2e-86) | Symbol: None | expressed protein, similar to (SP:P76370) Protein yeeZ precursor. {Escherichia coli O157:H7} | chr1:6807706-6809560 REVERSE | Aliases: F14P1.35, F14P1_35; (*SWP) sp|P0AD13|YEEZ_ECO57 (e_value=9e-11) Protein yeeZ OS=Escherichia coli O157:H7 GN=yeeZ; ">
      <seq>gagatttgccggctgccaaatcaaccggctgttattcatctccggcagggtcaaactgccggaatatattctattaaaacgccacagttttcatccaatattaaatgcagtgtaggtgaagaatccagcactaaaaatccggatttgaaaaatcgaatgttcattctggggatgggtttcgtaggaaaattcttggctgcagatttgaaaagcaatggatgggaagttacaggaacttgtaccagtactgcacggaagaagaaattagaggaaatggggttgcatgcgcacatatttgacgccaatgaaccacaacaggaagtcctcgatatcttgaaattccattcacatcttcttatctacatccctccagttttgggtgttggtgatccgatgcttcggcataaagaattgctaaaagaaagactaaaggatggtaacctccagtggcttggttacttgtcatcaacaggtgtttatggagactctggtggtgcattggttgatgaagagtttccacctagctcgacgactgaattggccaaagcaaggatagctgcagaggaaggatggttacatctggcttgtgatggaagggtctctgcccaaatatttagattgggtggcatatatggtcctggtagaagtgctgttgacactattctcaagcaagagcctctgtctaaaggtcagaagatgagattctccaggcattatacctcacgtattcacgttgctgacatctgtcaggctcttaaggccagcatacagaggccacctcctgggcagatatacaatgtagttgatgacgatcctgctcctagagagcaggtatttaagtttgctaggaacttggttgaggagaaatggccaggccacctaatcttcaacaactctgctgaagaggtaaagtctctaatcccgcagggaggttcaaggggagagaagcgagtctccaataaacgcattaaaacggaactgggagtgaatctgctttanccctacctatgaatctggattgcggagcattattgaacgcatagaagttccatttggcgtaagttgattgctctatcatcagaccgggaatggaaggtttccaatgtatgtggtgtttaggatgaaaagattgagctattaggatgaagtaattttatcgacgtgatgtagctcagaatgctggctgatatgacaacttgttatcctttttattttttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41177" stop="37304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40877" g_stop="40657" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.667" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40563" g_stop="40471" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="314" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40470" i_stop="39666" i_length="805">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39665" g_stop="39587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39586" i_stop="39111" i_length="476">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39110" g_stop="39032" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="472" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39031" i_stop="38877" i_length="155">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38876" g_stop="38837" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="512" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38836" i_stop="38755" i_length="82">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38754" g_stop="38620" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="647" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38619" i_stop="38479" i_length="141">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38478" g_stop="38341" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="785" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="38340" i_stop="38040" i_length="301">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="38039" g_stop="37604" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="1222" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U586574" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1221</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40877" e_stop="40657"/>
          <exon e_start="40563" e_stop="40471"/>
          <exon e_start="39665" e_stop="39587"/>
          <exon e_start="39110" e_stop="39032"/>
          <exon e_start="38876" e_stop="38837"/>
          <exon e_start="38754" e_stop="38620"/>
          <exon e_start="38478" e_stop="38341"/>
          <exon e_start="38039" e_stop="37604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATGGTGAATAAGACTTATCCTTGATCTCCTTTTCCTCTTTTTGTGTAGTTGAAGTTGTGAAAAGAAGCAAGCTGTTAACATTTGTGTATTGCGTAGGGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACAGTGAGTTTTCATGTCATCTCTCTTATTCATATAAATGTTCTTTGGTCAGAACTCAGAACATAACTCTACTGTTATTGGAAGCTTCGTCCTCAACTCTTTTAACATAACAAATTAAGTACGTCGTTGCTGCAAATTTTGTCTAAAGTTGAATATGGATCAATCCTTTCGGATGCAACTAGTCGCCTCTTAAAATAACACACTAGGATTTTGCTGTATATGACGTAACTGCTACTGGACATTAATCAATGGCTAAAATGGCCAGAAAATGATACGATAAAAAGACATAGTATAATGAAAACAACTAGAGAATAATTGAATTCTCAAAATCTAAAGGAATAGAGGCAAACCATGTTTTTATTTAACTAGGGAAGTGACTTCAAATGATAAATGCATAATGTGTAGACTTCGAATCGGTGGAGAATTAGAATGTGAAGCAAAGACTTTAATGGCAAGAACTCCTAAGCTGTTGTTGGTTTTCCCTTTTGTGTTTACTCCTTTTTCAAACAAAATATACAGTACACAATACTTTCATGAATGAAGTGAATGATAAATTTCTTTGTTAAGTAGCAATTAAGTCTCTTTGATTCAGTTTTTTCTCACACTGTTGTTGTAATAGTTACTTCATCCAAATAAGATCAAAGTTAGGTTGTGTTTCTTATATCCAGACTAATGTGTTCATTGATTTCTGATTTAGGGTGTAATGTAGGGTCACATATCTCAACCTCCATACTTGTAGGCGGTTTTATAGAAGAAACACTCTTTCTATCTCCCCCCTGTTCTGATAAGTGTTTATGCTCTTTTTCAGACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCGGTAAATTTACTCAGTATTATGCTGCTGTTATAGTAAGCAATATGACATAGGTCGTGCTAATTGTAGAGACCTTCCATGTTGACGTGTTTATTGATGATGTTCATACTAGATATTCCTAACGACTTTTTCTTGGTCACGATATTCAAATGAACTATGATAAAAAAGAATAGAAGTTAATTTTGTTTCTTCTTATCGTTTATCTTAATTTTATTGTGTTTCTTTAGGTGTGGAATTCTTCTTCTTAGCTACGTTTTGCTATTATGCTCAATAGTTAGCAATATCATTTATTTGAAGATTCTTTACTTTTGAATCTAAAAAATAAGGTAAACTCATGCACCGAAGCCATAAAACTTTCTATGTAACTGTAGAATCTGGAATGGAATGGAGCTATATGGTATCATGAAAAACTGTAGGAGAAGTTTTTAGTTTACCTTTCCACTAGCTTGAATATCTAGTAATAGTTGTGTGTACTGCAGATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAGGTATGTCTTTTTTAACTATTGCAGGAAGAAATTTTGCGTTTGTATTGTTAATCACATTGCTACATGGTAAAACTACTTCTTTGGACAGACTGTATTCACAAAGTCTGTTATTGACTACTGATCCTAAGAAATTTGTTTCCCTTTTGGATTATTAGGTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGAGTAAGTCTACGTTAATCAAGCACTCAATTTCTTTGGTGCATTCGAAGTAGTCATCCTAGATTTATATGTTACCGTATTTCAGGTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAGGTTGCTATGAGGACATGTTTACTCTAATTGGACATTGCAATTGTTTTTCTCCGGATATGCTGCATCCAGCAGTTTTAATCTAATGAAGCACTCTTTGATTTAGTTGCAATCTGGCTTACTTTTACTAATGTTTTATTGCAGTGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCATCTCCTGGGTACCCATTTTCAATAACACTACTCTTTGTTCATCCAATTAGATTGTCTTAAATGTACGATTTATGTTTCTTCCTTTACTACCAAGATAATAATAAACCATGCCTCTGAAGTTGGTAATACCTTGTCCGCATAAAACTGGATTAGAAGAAGCTTTAGCACACTTTTGTATTTGCTTCTGCTCAGGGGTTTCTATGTGCAATAACTTTTAGGTCATTTTGATGGGGGGTACTTTTCAGCTTTCTATTTAATTATCTTGTAAGTTTCATCTTAATCAGTTAATTGTCTGGTTTGGCATTTCAGGCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTA-CCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCAC</genome_strand>
        <mrna_strand>GAGATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATG.............................................................................................GGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTACATCCCTCCAGTTTTGGGTGTTGGTGATCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAG...........................................................................................................................................................GTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGA..................................................................................GTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAG.............................................................................................................................................TGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCACCTCCTGG.............................................................................................................................................................................................................................................................................................................GCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTANCCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564297" ref_strand="+" ref_description="SGN-U564297 Tomato 200607#2 [60 ESTs aligned] (*GB) gi|157348207|emb|CAO22917.1| (e_value=0) unnamed; (*ATH) AT2G23770.1 (e_value=3e-124) | Symbol: None | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein, contains Pfam domains, PF00069: Protein kinase domain and PF01476: LysM domain | chr2:10127322-10129160 REVERSE | Aliases: F27L4.5, F27L4_5; (*SWP) sp|O64483|SIRK_ARATH (e_value=8e-36) Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK; ">
      <seq>taatcctatgtggttcatcaattattctcttctcacataatattcctacacgcatttacgttgactttttcttttgaaacattattaatgccgcgttggtatttgattattgcctaaaaaaatagtaaaatttgtgctacgcttatataacaaaacaacagtctcttgaactaatgtttcttgattctaatgaactgaaaatgaattattctcatctcatctttgtttttaccatcattcttgcttattcctctgtttcaattcttgcacaacagccttattttggaactggaacaaatgactgcagcagccaagatacctccacttctgcttttgggtatttatgcaatggcgttaaccgtacttgccaatcttatttgaccttcagatctcaaccccctttcaatactgtgtcctcaatctcttctttactcggtgctaatccttcacagctctctcagctcaattctgtttctcaaaatgctacctttaacaccaatcaaatggttcttgttcctgtcacttgttcttgttcaggtcagttttatcaatcaaatgcatcttatgttatcagaagggatgatagtttcttgaatattgcaatgaataccttacaaggattgtcaacttgccaagctatcaacgcggagaacagtgaacaagctaacaatcttgttgttggttcaagaattaatgttcctctgcgatgtgcttgtcctacacaaaaccaaactaataatggtacaaattatctgcttacttatttgattgcttctggggaatttgtttcctttattagtgataaatttggggtggattttagggcaactcttgctgctaatagtataccagaagatgctcctactgtctttccaaatactactctattagttcctttatcgaccccacctttgagttcccaagttgctggaccatctccaccaccgcctcctgcgacaacaccaacaccacctgctgtccctgtatcggagagcagctcgaacaaaacttggatatatgttgtcgctggtgttgttggaggacttgttgctttgtgtattctgggggtggttgttttctttttgtttttcaggaaaaaggaaaagaaagctgatccacagtttgtttctgaaagctttgaagctgttgagaaaccgtcgaataagaaagttgaagaagaatcagaggagtttttggaaagtttatccagcatagctcaatctgttaaggtttacaagtttgaagaggttaaagcagccacagaaaatttcagtcctacatgtttgattaagggatctgtttatcggggcacgataaatggggattttgctgctataaagaaaatgagtggtgatgtatcaaaggaaattaatttgttgagcaaaatcaatcattttaatcttattagtctatcgggaatttgttttcatgatggtcactggtatcttgtatatgaatatgctgccaatggaccattaagtgattggatatgtcaccataatggtgagcagaagtcactaagttgggcacaaagagtacaaatttcttttgatgtggctacaggacttaactatctccatagctacacatccccacctcatgttcacaaggatttaaacggtgataatatacttcttgatggtgatttaagagccaagattgctaactttggtctagcaaggtcagcagatggacaagaaggtgagtttgcattgacaaggcacatagttgggacccaaggctacatggcacctgagtatttggagaatgggctagtctcaccgaagctggatgtctatgcattgggagttctgttgctggagattctcaccgggaaagaagtttccgctttatatgaaggttcaaacacaaacttggctgagttgttgatcccggtgcttaatgatgataatgcaaaggagagtttgagcaacttcgttgacccttctctgcaagggaagtaccctgtggaacttgcttttgccatggtcagattgatcgataactgcctaatgaaagatccctcacatcgccctaatacggatgagattgtgcaatctgtttcaagaattatgacagccacacactcatgggaaacgtcatttagcacttcagtgtcaccacatagattgccctagatcaatgattgtttttctttgttgtttattttgtttttgttttttcctccttccacatctagcatgatttgttatgtgcaattgttattaccttgtttatgaattggaagaggtaatgcaccatttatcctacataaaaatcagtttaacatttcagtcgaagattcaagcattaatagaactattgcaaagcaacacaccaacaacagaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="41672" stop="44572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41972" g_stop="44271" g_length="2300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2299" r_length="2299" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U564297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2300</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U564297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41972" e_stop="44271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCTATGTGGTTCATCAATTATTCTCTTCTCACATAATATTCCTACACGCATTTACGTTGACTTTTTCTTTTGAAACATTATTAATGCCGCGTTGGTATTTGATTATTGCCTAAAAAAATAGTAAAATTTGTGCTACGCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</genome_strand>
        <mrna_strand>TAATCCTATGTGGTTCATCAATTATTCTCTTCTCACATAATATTCCTACACGCATTTACGTTGACTTTTTCTTTTGAAACATTATTAATGCCGCGTTGGTATTTGATTATTGCCTAAAAAAATAGTAAAATTTGTGCTACGCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAA-TTGGAAGAGGTAATGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="48824" stop="49660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49124" g_stop="49360" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49124" e_stop="49360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT--AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA-TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600611" ref_strand="+" ref_description="SGN-U600611 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tggggtaagacgtgaagttcatatgaaatgttaggtggcttgattgagggagtaattcttggttanacgaatctataaaaacaaatataatgtgtaattaaaacattatgaatgaaccatgaaatttccctaagaattaatgttaaacttgatgaaaaagtgaanaaaaatcgtanaataaatttccagaacttgaaaacagactttaaaagaatctggaaatttttgaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="57501" stop="58337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57801" g_stop="58037" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U600611" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57801" e_stop="58037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</genome_strand>
        <mrna_strand>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTANACGAATCTAT--AAAAACAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAANAAAAATCGTANAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAA-TTTTTGAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584699" ref_strand="+" ref_description="SGN-U584699 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|218197709|gb|EEC80136.1| (e_value=6e-51) hypothetical; (*ATH) AT4G36860.1 (e_value=5e-54)  Symbol: None | LIM domain-containing protein, low similarity to LIM-domain protein (Branchiostoma floridae) GI:3360516, DRAL/Slim3/FHL2 (Homo sapiens) GI:7209525; contains Pfam profile PF00412: LIM domain | chr4:17358440-17361872 REVERSE | Aliases: ... ; (*SWP) sp|P0C7Q8|Y1927_ARATH (e_value=3e-41) LIM and UIM domain-containing At1g19270 OS=Arabidopsis thaliana GN=At1g19270; ">
      <seq>cggcacgagcttgattcatacaaataattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggcttacaggaacctacccgtgttaaaattttcagtcattccgagtgtttccacttccacgcggatgctgtaaacaaaccttctatactagttttgtaggaccacatagcacatacaattataatcattacacaataattaaaagataaagagtaaatgcagcaataagatgcagatacgtttaatacacttgtgtctgcttcaacttgtatacttattcatataaaggaaatccaaacactattgatgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61891" stop="48042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61592" g_stop="61273" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60661" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="846" r_length="527" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60660" i_stop="60405" i_length="256">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.689" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60404" g_stop="60354" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="895" r_length="49" r_score="0.490"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U584699" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61592" e_stop="61273"/>
          <exon e_start="61182" e_stop="60661"/>
          <exon e_start="60404" e_stop="60354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATATGTCTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGT-AACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGAT-C---TGCGTTTAATACCCTTGTGTCTGCTTCAACTTGTATACTGTCACGACCGGAATCTAGACCCCAGACGAGACCGGCGTCGTTGACCTCTCAGAGGTCGCAGACAAGCCTACTTACGTCATTCTTACTTTACATAGATTAATTTTAGCGGAAAATTTGGAATTTTTGATTCTTTAATCATACTTGCTGAACATTCTTAACATTTCGTAATCGTTCATCATCAACCATCTAACCTTTAAGAGATAAGCAACTGAAAGAAATAATTCATTAAATATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTCTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATG</genome_strand>
        <mrna_strand>CGGCACGAG-CTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGCTGTAAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATGCAGATACGTTTAATACACTTGTGTCTGCTTCAACTTGTATACT................................................................................................................................................................................................................................................................TATTCATATAAAG--GAAATCCAAACACTATTGATGCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594990" ref_strand="+" ref_description="SGN-U594990 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|186516974|ref|NP_974697.2| (e_value=6e-51) zinc; (*ATH) AT4G36860.1 (e_value=5e-53)  Symbol: None | LIM domain-containing protein, low similarity to LIM-domain protein (Branchiostoma floridae) GI:3360516, DRAL/Slim3/FHL2 (Homo sapiens) GI:7209525; contains Pfam profile PF00412: LIM domain | chr4:17358440-17361872 REVERSE | Aliases: ... ; (*SWP) sp|P0C7Q8|Y1927_ARATH (e_value=6e-39) LIM and UIM domain-containing At1g19270 OS=Arabidopsis thaliana GN=At1g19270; ">
      <seq>agggggtcttttaacacgcttgactcccccacaagcttgattcatacggtttattcagatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggtaataaatgtcacacttctttcatgcttaatagaatggtctaaaaatcatacctcataagatattcttacttcactctatctgaagacaaatttactcatgactttttcaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatcctcatcatcatcttcatcaccatctacttcatcaaagaaagggaagcgctccgactttgagaagaaactgggtgatttttttaagcaccaaattgaatcagatacatcagcagcttatggggatggattcagagaaggtaacaaggcagtgctcaagtatggccttaagacgacacttgatcacatccggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="61867" stop="60566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61559" g_stop="61273" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="345" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61182" g_stop="60866" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="662" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U594990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61559" e_stop="61273"/>
          <exon e_start="61182" e_stop="60866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTT</genome_strand>
        <mrna_strand>ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584698" ref_strand="+" ref_description="SGN-U584698 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|115466772|ref|NP_001056985.1| (e_value=2e-175) Os06g0182500; (*ATH) AT1G19270.1 (e_value=4e-147)  Symbol: None | ubiquitin interaction motif-containing protein / LIM domain-containing protein, weak similarity to LIM-homeobox protein (Mus musculus) GI:2149584, Hic-5 (Mus musculus) GI:664955; contains Pfam profiles PF02809: Ubiquitin interaction m... ; (*SWP) sp|P0C7Q8|Y1927_ARATH (e_value=4e-146) LIM and UIM domain-containing At1g19270 OS=Arabidopsis thaliana GN=At1g19270; ">
      <seq>gattttcgccgatctaattacccttctttgacaaagttgttttttttttttaaaaaaaattgggcttatattttcgggggaattcaattcctttcatttggtttcccctttttcgggcttacttttttaaaatcttattcacacttccactggaatgttcctctgaacctctgttttgtaattttgacaagtttttattcttgtttagaatggtggggatatgggtatctttagtgtcatctccggttcttggtacatgacctaccttcaaactgaaaattgatgctttgtactgattcatttggaagtgtttattgcttaccagttttggattcatatagccaacttcaacttgtttgggattgaggcgtagttgttgtacaccagggacaggaaattgtgttatgggttggttagaaaagatatttggaggttccacacacaggatctccggtggacaataccatagtgggtatgagggtgcgcaatatcatgggggctacgatggagggcaatatcattcggggcatgaaggagaacaatatcatggagggtatcaggacagtactacttgggacggaccaactacatcagtggatgaatcgtcagattttgataaagaagaaattgatcgtgccattgcactttctctagcagaagaggatcagaaggggaaaaaagtaattgagagtgaaccccatttggaggaagacgaggctctcgccaaggcccttcaggaaagtttgaatgtggagtcgtctccaccaccaccaccacctcgatatgattatggaagtccctttccctcactctcatactcgtttccgtatgggtatagggtctgtgccggttgcaatgctgaaattggacatggaagatatttaagttgcatgggagctgtttggcatccagaatgtttccgttgccatggttgcaatcaaccaatttccgactatgagttttcaatgtcagataaccgtccataccataaatcatgctacaaggaacagcatcacccaaaatgtgatgtatgcaagagctttattccaacaaatccggctggtctaattgaatatagggctcatcctttctggcttcagaagtattgcccatcacatgaaactgatgggacgcctcgttgctgcagttgtgagagaatggagcccgtagatgccagatatctgatacttgaagatggtaggaagctgtgtctagagtgcttggactcttcaataatggacactcatgaatgtcaacccctttatcttgagatacaagaattttatgaaggtttaaatatgaaagtagagcagcaaattcctttgcttctagttgaaagacaagcattaaatgaagcaatggaaggagaaaagaacggtcatcatcacatgcctgagactcgaggactctgcctgtccgaggaacagaccattagcagtatttcaaggagaccacggattggtggttatcggattttagatatgtttacagagccttacaggttaattcgacactgtgaagtgacagctattctaattttgtatggtcttcctaggttattgactggttcaattctggctcatgaaatgatgcatgcatggttgcggcttaaaggttatccgagtttaagtccagaagtggaagaaggtatctgccaagttttagctcacatgtggttggactcggaaattatagctggttctggcagtacttcaacttctgcatctacctctgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="65136" stop="60759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64837" g_stop="64532" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64531" i_stop="64075" i_length="457">
            <donor d_prob="0.790" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64074" g_stop="63786" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="596" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63605" g_stop="63515" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="687" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63033" g_stop="62883" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="838" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62755" g_stop="62635" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="839" r_stop="959" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62527" g_stop="62444" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1043" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126">
            <donor d_prob="0.775" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62317" g_stop="62198" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1044" r_stop="1163" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62197" i_stop="62029" i_length="169">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62028" g_stop="61816" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1376" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="61815" i_stop="61711" i_length="105">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="61710" g_stop="61648" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1377" r_stop="1439" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="61647" i_stop="61560" i_length="88">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="61559" g_stop="61444" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1440" r_stop="1555" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="61443" i_stop="61332" i_length="112">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="61331" g_stop="61273" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1556" r_stop="1614" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="61182" g_stop="61059" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1615" r_stop="1738" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U584698" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64837" e_stop="64532"/>
          <exon e_start="64074" e_stop="63786"/>
          <exon e_start="63605" e_stop="63515"/>
          <exon e_start="63033" e_stop="62883"/>
          <exon e_start="62755" e_stop="62635"/>
          <exon e_start="62527" e_stop="62444"/>
          <exon e_start="62317" e_stop="62198"/>
          <exon e_start="62028" e_stop="61816"/>
          <exon e_start="61710" e_stop="61648"/>
          <exon e_start="61559" e_stop="61444"/>
          <exon e_start="61331" e_stop="61273"/>
          <exon e_start="61182" e_stop="61059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCGCCGATCTAATTACTCTTCTTTGACAAAGTTGT-TTTTTTTTTTAAAAAAAATTGGGCTTATATTTTCGGTGGAATTCAATTCCTTTCATTTGGTTTCTCCTTTTTCTGGCTTACTTTTTTAAAATCTTATTCACACTTCCACTGGAATGTTCCTCTGAACCTCTGTTTTGTAATTTTGACAAGTTTTTATTCTTGTTTAGAATGGTGGGGATATGGGTATCTTTAGTGTCATCTCCGGTTCTTGGTACATGACCTACCTTCAAACTGAAATTTGATGCTTTGTACTGATTCATTTGGAAGTGAGACTCCAAACATATAACCACTTTTTCCCTGTTTCTTTTAACTTGGATCATAGTAATTCAAATGTTTTTCTCTGGTCTTTTATGTAGACCTCAAATCAATAGTCGGTTGTCTTTCTGACGGTTGGTGGGTGGTCATTATTTTGTACTGATGAGGGCAACTTGTTTATGATGACCAATATATTATGCTGATATTACAATTTTCGAGAAGATTGTCGTTTTCCCTCAGCTGATTATCGGTTCTGTTAGTAGTCATGTTGAATTTACTTTAGTATTCAGATGCTACCTTATCTTTTTTGTGATTTTCTTGATCATTAATTTATAGATGAGCAGTTTCAACTCTGCCGATAGTTCATGTTAGTTTTGTTACTTATAGGATCAATTCGAGATTGCTAGCAGATACAGATGATCCAGTTCACAAGCAGTTCCTAATAAATATCCTTTTTTGGCTTTGCAGGTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTGGTAATCAGTGATTCTATTGCTAATTGCTTTAAGTTGTTCTGTGTTTTCTAACATTTGATTAGTGCATTATAAATTGAGCATTTTCCCAGGCTATGTTGCTGAGAAAATGGTCACAGAGTTCTAGCTTTTAGTTAAGTCTTTCCCTTGCTAACTGAATATGATAATACGGACCGAGTGTAGGATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTGGTAAGTAACATTATTAGGATTTAATATGAATGTCATCCATTTTGTAAAGATTGATTTCTTGTCTAGATCATCTGATGAATAAATAATAAGGTAAACAATGACAACTTTCTGTCTCTCTCCACTCGACAAGTTTTTCAGTGACTTCATTATAGAATTGTATGGTATATCTGAAGTATTTGGCAAACACTCACCTTATTGATATTGTTGTGTTTGCATAAATCTGCAACTCTTGTCCTAAGTTTTTTCTTTCTTTTTGAGAAATTGTGTGGTTATAAATGCAGAATCAATCAGAAAAATGATGTTTTTGTCAAGCATGGTCTGATGGAATAGGACCTATTTACTGTTGCTTCTTTTGTCAGGATAATTGTGGATTTAGGGGTTATAGTATCTAGGTTAGTTTGTAATGTTTTATGCAGCTCTAGTATATTGGTGCTTAATTGCAAATCAATGTGTATCTTAATCTTCTGCTGCTACCTAATAGAGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAGGTAACACCTCTTCTATTCTTTTGGAATAAAAGTACTTTTAACTATTTTATCTCTTAATTGAGTTGTAATTTTATTCTCTCATCATGTCCTTGTTAACATATCCTTGTACTGATGTGTCTGATTGTAGGGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAGGTCTAAATGTAGTCAAATTTTACTCGAATAAGTTTTTATCCATGGTTCTTTCAGTTACTATCTTGACTTGTTGAATATTAAAGCAATTAATTTCTTGTCTTTTACAGTTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTTGTAAGTGTTGCATTCATTCTTGTTTGTGGTATTGCACCATGAGCTTTACTGCATCCAACAGCTTCATTCTGGTAAAATATGACTAACCATATTTTTTGTATTTCTCCTCGACTTCTATGTGCTTAGATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAGGTTAGCTGCTGCCACTAACTATTGTAACATTTCTTTAAAGTGCATATATGTCTTTAAAGATTAGCAGAACAAATAGGAATACTATAAAACCTGAATATATGTTTAAACCTGAGACATTCTTTTTTCTCTTGTTCTTGTTGAGTAATGTTAAGATTTCTTGTTTTTGTAGCCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAACGTAAGAGTTCTGTTCAGAATTATCCATTTCTAAAGACGCTATACAATCACAGTCTGAGAAAGCTGTTACCTAACATCCAACTTCCATTTTTTTTCGTCTTGATAGGGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGTGTATGAGTCTTCCCTTTTTCTGCACTTTTCTTAAATGTCCATATACTGTTCAAAATGAAATATGTCTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAGGTGGATGTTTTATTTTGATGACACTTGAATGTGATATCCTTTTATATGTTAAGATTCTAAAGATAAGTTCTCCATTTAAATGTTTATTAGGTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATC</genome_strand>
        <mrna_strand>GATTTTCGCCGATCTAATTACCCTTCTTTGACAAAGTTGTTTTTTTTTTTTAAAAAAAATTGGGCTTATATTTTCGGGGGAATTCAATTCCTTTCATTTGGTTTCCCCTTTTTCGGGCTTACTTTTTTAAAATCTTATTCACACTTCCACTGGAATGTTCCTCTGAACCTCTGTTTTGTAATTTTGACAAGTTTTTATTCTTGTTTAGAATGGTGGGGATATGGGTATCTTTAGTGTCATCTCCGGTTCTTGGTACATGACCTACCTTCAAACTGAAAATTGATGCTTTGTACTGATTCATTTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG....................................................................................................................................................................................GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG...............................................................................................................................GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG...........................................................................................................TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT..............................................................................................................................ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGCTGCAGTTGTGAGAGAATGGAG.........................................................................................................................................................................CCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAAC.........................................................................................................GGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGT........................................................................................ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAG................................................................................................................GTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG..........................................................................................GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569815" ref_strand="+" ref_description="SGN-U569815 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|169647567|gb|ACA61780.1| (e_value=0) BIPINNATA; (*ATH) AT4G36870.2 (e_value=5e-120)  Symbol: None | similar to BEL1-like homeobox 4 protein (BLH4) [Arabidopsis thaliana] (TAIR:At2g23760.1); similar to BEL1-like homeobox 4 protein (BLH4) [Arabidopsis thaliana] (TAIR:At2g23760.2); similar to BEL1-related homeotic protein 13 [Solanum t... ; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=5e-119) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2; ">
      <seq>gcccttattagttgagtgaaaaaagagaacagcgacctcttctctattttcttcccttaattaggtgtctctctctcacacacacagagagagacaaagaaaaccagaatacatatgtcaaagttcatcttcttattttaagaaaaaatatgtttagctgaattatatttccagaaggcgattgcagcatagagtagaggacgagaaataaaaaagaaacgacagcagacagcagagaaatagagagagacactcacaacagctttgcctttcaaatcccacgaagagaaaacgatagctgagaaacctgcaaaaaaactcttatgagtagaagaaaagagatgatgaagaagaagacaacgctgccatgggaatagcaacacaaccaattacacttcgtccttgtcacaaatatccagtaattcaacaagttgtagaaaatctcaattctatgtcccaagattatcatcaccacagtctcttcagtttccctaatgggttcgagagatcacaagccgaacagcagcagcaccagcaccagcaagctcaacagatccgtcgagataaattgcgagtgcaaggattcgaaccgtttgaagatgaaacaagtggcctaccaacagtttatgagactgctggaatgttatctgagatgtttaatttccctcctggaaacgccgcaaccaacgcagcggaattattagaaactcaattcaatccgaattttagacagccgaatccacggattcatgctgctgctgccatggggaacgagtggttcggcaaccaccgacaaggtatggtagtgggtggaggtgcaagtagtcaaccattggggatatgcaaaaaatcatacggaactccatgcaactttttctaatgaatccacaaccaaggtcaccttctccatctcctcctaattcaacttcttctacgcttcatatgttgttaccaaacccatcatctactccaacacttcaagggtttcctaatccggccgaaggatctttcggtcagttcatgacatgggggaatggaggagcaagtgctgctacagccacccatcatctcaatgcccagaatgaaatcggaggggtaaacgtcgtagaaagtcaaggcctatctctatccttgtcttcttcgttacagcacaaggcggaggaattacaaatgagcggagaagctggaggaatgttgttcttcaatcaaggagggtctagtacttccggtcaatatcgatacaagaatatgaatatgggtggatcaggaataagcccaaacattcatcaagtccatgttgggtatgggtcatccttaggagtggtcaatgtgttgaggaattccaaatacgcaaaagctgcccaagaactactggaagaattctgcagtgttggaagaggtaaattgaagaagaataacaacaaagcagcagccaataaccctagtggtggcgctaacaatgaagcttcttcaaaagatgttcctactttgtccgctgctgatagaattgaacatcagagaaggaaggtcaaacttttatctatgcttgatgaggtagataggaggtacaatcattactgtgaacaaatgcagatggttgtgaattcgtttgatttagtgatgggtttcggggcagcagttccttatacagcactagcacagaaggcaatgtcgagacatttcaggtgtttaaaggatgcaataggagcacagttgaagcagagttgtgagttattaggagagaaagatgcaggaacttcgggattgactaaaggagaaactccgaggcttaagatgcttgaacaaagtttgaggcaacaaagggcgtttcaccaaatgggaatgatggaacaagaggcttggagaccacaaagaggcttaccggaacgttctgtcaatattttaagagcttggctttttgagcattttctacacccgtacccaagtgatgctgataaacatctgttggcaagacagactggtctctccagaaatcaggtatcaaattggttcattaatgcgagggttcggttgtggaaacccatggtagaagatatgtatcaacaagaagccaaagatgaagatgagaatagccaaagccaaaacagtggcaataatataattgcacaaacaccaacgcctaatagcctgactaactcttcatctactaatataacaacggcaacagcagcagcaacaacaacaacagcccctacaactacgacagcactagctgctgcagagacaggaacagctgccactcccataactgttacctcaagcaaaagatcccaaatcaatgccactgatagtgacccttcacttgtagcaatcaattccttctcggaaaaccaagctacttttacgaccaacattcatgatcccgacgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="82664" stop="88682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82958" g_stop="83285" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83286" i_stop="83518" i_length="233">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83519" g_stop="84742" g_length="1224"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="1554" r_length="1226" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85171" g_stop="85553" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1555" r_stop="1937" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85554" i_stop="86880" i_length="1327">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86881" g_stop="86941" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1938" r_stop="1998" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86942" i_stop="87986" i_length="1045">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87987" g_stop="88382" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1999" r_stop="2394" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U569815" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2392</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82958" e_stop="83285"/>
          <exon e_start="83519" e_stop="84742"/>
          <exon e_start="85171" e_stop="85553"/>
          <exon e_start="86881" e_stop="86941"/>
          <exon e_start="87987" e_stop="88382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAGGTTTGTGCTTACATGAATAAAGCTGATTATCAGTTTTCTTTCTTTCTTTTTTTTTATAAAAAAAAACAAACAAAATAAATAAATTAAGAAAGAGTCTTTTTCTCTCCCTTCCTCACCTCTTACTCTTTGTCACACTTATTATCTTTTTCAATCTCCTGACAATAATTGTATCCCATGATGAATTATTTTAATGATTATAAACCGATTTTAACTATTTCATGCCCGATCCACAGTAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATT-GGGATATGCAAAAAATCATACGG-ACTCCATGCAACTTTTTCTAATGAATCCACAACCAAGGTCACCTTCTCCATCTCCTCCTAATTCAACTTCTTCTACGCTTCATATGTTGTTACCAAACCCATCATCTACTCCAACACTTCAAGGGTTTCCTAATCCGGCCGAAGGATCTTTCGGTCAGTTCATGACATGGGGGAATGGAGGAGCAAGTGCTGCTACAGCCACCCATCATCTCAATGCCCAGAATGAAATCGGAGGGGTAAACGTCGTAGAAAGTCAAGGCCTATCTCTATCCTTGTCTTCTTCGTTACAGCACAAGGCGGAGGAATTACAAATGAGCGGAGAAGCTGGAGGAATGTTGTTCTTCAATCAAGGAGGGTCTAGTACTTCCGGTCAATATCGATACAAGAATATGAATATGGGTGGATCAGGAATAAGCCCAAACATTCATCAAGTCCATGTTGGGTATGGGTCATCCTTAGGAGTGGTCAATGTGTTGAGGAATTCCAAATACGCAAAAGCTGCCCAAGAACTACTGGAAGAATTCTGCAGTGTTGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAGGCATGTATCCTAATCTCTCTCTCTTATCTCTCTATATCTTACGGGGTCAATGACCAATCATTGTTGTTTGTTTTAATCTCTTAATTAAACAAACAAACATAAAAAAATCTTACAGAAAGTTGCGGCATTTCTTGTGGAGTTAATTATATATATTTTATAAACAAGGACTAGAAAATGCCGGCTAAGGGATTAGATTTCGTGATTTCCATAGATTTTTTTTATTACATTCTGATTAAGAAATCCGTATTATTAGAATAAATAAAGAGTAATTCAACGGTTTTAGATTTTCTACGAGTACACGGAGATTAAATGATAATTATATATATTAGCAAGTAAGCAAACAAAGTCCGTTTGGTTAATGTTAATACATTTGTTTATTCAAATACTAGCACTTGACATGTACTAAGAGTCAATAATGTTGTAAGCAGGTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAGAGCTTGGCTTTTTGAGCATTTTCTACACCCGTACGTATATCTTTACTCTATTATTTATTTAAATATCATTGATAGGTCAAACGAAATTTTTTATTTTCTTTTTTATATGATTAATGGTATTTTTCAATATCTAAATTTTAATTTTTGAATATGAATTTTATTCAATCTAATTCACCTTTAAAGTTGAGTTATATTGATTCTCGAGAGAAAAAGCAGTCGGGAGTATAAGTTAAGGTTTTCACTGTCAATGTAGTTTATACGTTAAGAGCAAAGCTATTTCATTATTGTTTATCTTAATCTTCAAGTTACTAAAATTTACTTTTATAGGTATTATATACATGTTAATAGGAGGATTTACAAAAAATTATGTTTAGTGTATAAGTTAAACCCGTACATACATTCTTCCATTGACTGTTCTGAAGTCTAACCTTTTTCGTTCTCAAGAAGTCTTAGCTCCTAATACCAATGGAATCTGAATCTTTTTTTATATTTTTACTGTATAAACAAAAGTCTAAAGCGGCATTATTATGGAATTATGAAGAGACAAAATGAAGCTTCAAACCCATCAATCAACTTTTTTTTTTATTAGTCTAAGGGAAGACACATTTCCAACATCTATTTTTTAGCTTTTCCTTTTTCTTTTTTCTTTTTTCTTTCTCTTGCAGTGTCTCTGAGTTTAAAGGAATCCCAATTCAGTGTCCTTTGATGAATAAAGTATAATTTACGTTCTTTACTTTATTTTTCTTTTCCTCTAGTACAACCTCTTTTCTCCTGGATCCAATGCCCTACTACTGCTGACATTATATTGGCATGAATTTGAACAATAACAAAAAGAAAACCAACCTATTCATTGACATTGCATAGTAACAATAATGATAATAAAAGCAACTTGCGAGCCGCTCCTTCCATCCTCTTGTTCTTTCTGAAAATCAATTTGATTAATTTGAATGTAATACTTTGAGTTTTTAAAACTTAGCTAGTATTAATTAATTATATGAAAATTATGTGTACTTATAAAATGTTAAGTGAAAACGACAACAACCACATGAATTGAGACAAAGTATGGCTCAAAAGAAATGGTCAAATAAAATAGAATGTATGTAGTTGAGTATATGTTATGAAAAAGATGAGTGCATGCAGTTTTTTTTTTTTTTGGGGGGTTTGGTTGTGTGAATAGTGGCAGAGAGGTACTGTAACTGCTGCTGTTGGTTCTTGGATTGTCACGCCCATGCAGATAGAAAAAATAATGTTAATTCAGATGTAGCGATAAAGAAAGTTAGTCATCTCATTATACAGTTCTGGTAAGGAATATGATTTTATTTTTTTGGTTTGTGTTTGTGTGGTTGGTTTTTCTCAGGTACCCAAGTGATGCTGATAAACATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAGGTTTGCTTTATTTCTATTGTGAATCCTCTGTACTTTCTCTTTCAAGCTTTCTTATTCACATTATGCATATGCATATGCTATACTTTTTGTTTTTTTTTTCTTCTATGAAATTTAAACTAGTACTTTTACTTAACTTTCCAAGATCTTTAGTTAGGATACGAAAAACAAAAATATAGTGCAACCTCAAGATGATTTTGAATCTCCTAAACCATAGAGGGTAGTATTTCTTTTTTAGTTTCAAAAAAATATAGAGTTAATTTAGCTCAAGAGATATTGAATTAATTATTACCAATAAAAATTGTTAAAAATAAAAGAAGTGATTTTATGTGGTGCATGACTTTCTTTTTCTTTTCTTAGGGGTAGAGAATGAACATTTTTTCTATTTATATTATTTCTACAAAGACATAAATTCTAGGTTTGTGAAAGAAAATCTTAGGAACAGTAAGTGCAGAGGCAAGGTATACATTTTTCCACGACCCATTTAAGTTTACAGCTCTGTTTGCGCATACTCCCTCCATTCCCTCTTTTGTCTGGTGAATGTTGAACCCAACCACAATTATTAATTAAAAAATGTCATAGGTTGAAATGTCATGTTTTTTTTTTCTTCCTCTTTAAGACAAAAATTAATTTCAAGAAACTGAAAAATGTAATGTTGGTCATACATGTTCTCAATTTAGTGACATGATTGGATCTTATTCACTGAAAGATGAAATACAATTAACACGTGTGGGGTAGTATATATTTACTCTTTTGAACGCTTCTACACTTCTATTCTTAACTCCCTTTCACATCATCTATCTTTTCATTCTTCTCCAGATATTTTTTAATTCTATTTTTCGTATGATATATTTAATCACATAAGATTAAAGAAAATTTTGATATATTTTACAGTATGTATTTATAAGTGATTGAATTTTGTATTTGTGGACATCAGACAAATGTATTGAAACAGAAGAAGATAGGATAGTACATGAAAGTTAATCTCTTATTATAGAAAACAAGAGTTTTAATTAATGTTGTGTATATGAATGTGTTAATTATTCAGGTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACTAGCTGCTGCAGAGACAGGAACAGCTGCCACTCCCATAACTGTTACCTCAAGCAAAAGATCCCAAATCAATGCCACTGATAGTGACCCTTCACTTGTAGCAATCAATTCCTTCTCGGAAAACCAAGCTACTTTTACGACCAACATTCATGATCCCGACGCTTGC</genome_strand>
        <mrna_strand>GCCCTTATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTAGGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAG.........................................................................................................................................................................................................................................TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATTGGGGATATGCAAAAAATCATACGGAACTCCATGCAACTTTTTCTAATGAATCCACAACCAAGGTCACCTTCTCCATCTCCTCCTAATTCAACTTCTTCTACGCTTCATATGTTGTTACCAAACCCATCATCTACTCCAACACTTCAAGGGTTTCCTAATCCGGCCGAAGGATCTTTCGGTCAGTTCATGACATGGGGGAATGGAGGAGCAAGTGCTGCTACAGCCACCCATCATCTCAATGCCCAGAATGAAATCGGAGGGGTAAACGTCGTAGAAAGTCAAGGCCTATCTCTATCCTTGTCTTCTTCGTTACAGCACAAGGCGGAGGAATTACAAATGAGCGGAGAAGCTGGAGGAATGTTGTTCTTCAATCAAGGAGGGTCTAGTACTTCCGGTCAATATCGATACAAGAATATGAATATGGGTGGATCAGGAATAAGCCCAAACATTCATCAAGTCCATGTTGGGTATGGGTCATCCTTAGGAGTGGTCAATGTGTTGAGGAATTCCAAATACGCAAAAGCTGCCCAAGAACTACTGGAAGAATTCTGCAGTGTTGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAGAGCTTGGCTTTTTGAGCATTTTCTACACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCCAAGTGATGCTGATAAACATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACTAGCTGCTGCAGAGACAGGAACAGCTGCCACTCCCATAACTGTTACCTCAAGCAAAAGATCCCAAATCAATGCCACTGATAGTGACCCTTCACTTGTAGCAATCAATTCCTTCTCGGAAAACCAAGCTACTTTTACGACCAACATTCATGATCCCGACGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588288" ref_strand="+" ref_description="SGN-U588288 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|169647567|gb|ACA61780.1| (e_value=7e-40) BIPINNATA; ">
      <seq>ttttcttcccttaattatgtctctctctcacacacacacagagagagacaaagaaaaccagaatacatatgtcaaagttcatcttcttattttaaaaaaaaatatgtttgttggaagcttagctcaattatatttccagaaggcgattgcagcatagagtagagcacgagaaataaaaaagaaacgacagcagacagcagagaaatagagagagacactcacaacagctttgcctttcaaatcccacgaagagaaaacgatatctgagaaaccctttttccgacctgcaaaaaaactcttatgagtagaagaaaagagatgatgaagaagaagacaacgctgccatgggaatagcaacacaaccaattacacttcgtccttgtcacaaatatccagtaattcatcaagttgtagaaaatctcaattctatgtcccaagattatcatcaccacagtctcttcagtttccctaatgggttcgagagatcacaagccgaacaacagcagcagcagcaacagcaccagcaagctcaacagatccgtcgagataaattgcgagtgcaaggattcgaaccgtttgaagatgaaacaagcgggctaccaacagtttatgagactgctggaatgttatctgagatgtttaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="82704" stop="84156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83004" g_stop="83266" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83267" i_stop="83427" i_length="161">
            <donor d_prob="0.565" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83428" g_stop="83459" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="305" r_length="31" r_score="0.531"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83460" i_stop="83518" i_length="59">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83519" g_stop="83856" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="649" r_length="344" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U588288" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83004" e_stop="83266"/>
          <exon e_start="83428" e_stop="83459"/>
          <exon e_start="83519" e_stop="83856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATG--T-TT---AGC-T-G---AATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAGGTTTGTGCTTACATGAATAAAGCTGATTATCAGTTTTCTTTCTTTCTTTTTTTTTATAAAAAAAAACAAACAAAATAAATAAATTAAGAAAGAGTCTTTTTCTCTCCCTTCCTCACCTCTTACTCTTTGTCACACTTATTATCTTTTTCAATCTCCTGACAATAATTGTATCCCATGATGAATTATTTTAATGATTATAAACCGATTTTAACTATTTCATGCCCGATCCACAGTAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCG---AACAGCAGCAGCA-C--CAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</genome_strand>
        <mrna_strand>TTTTCTTCCCTTAATTATGTCTCTCTCTCACACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAAAAAAAATATGTTTGTTGGAAGCTTAGCTCAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGCACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATATCTGAGAAACCC.................................................................................................................................................................TTTTTCCGACCTGC-AAAAAAACTCTTATGAG...........................................................TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCATCAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAACAGCAGCAGCAGCAACAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGCGGGCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598778" ref_strand="+" ref_description="SGN-U598778 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348214|emb|CAO22924.1| (e_value=7e-20) unnamed; (*ATH) AT3G50780.1 (e_value=4e-20) | Symbol: None | expressed protein | chr3:18886380-18888505 REVERSE | Aliases: F18B3.60; ">
      <seq>aacacaaccaacttgtattacatacctcttacaaatcactaacacaccaaattggacaattcaaatgatactctaaatttacatgattcacacaaggaatcagttagacaccttatatagatgagtaatttatccttgattcgacagagcccccgagctttcttcattgcatacaacagaagtctccttcaattcaacttaacactgatcttcaacaatttccttttaaatgataccataaacgtctaatgttctgttacctttggagtcgtaacatggtctaatgggcgggtacttcctgtctctgcataaggtctgacaaatgtacgacgccaccagacttcaaatgctctctgaagatttggacaattatcacctgacttgaggaaactgcctaaccaagaaagcaaaatgctctgctgttcctccagaggtagtgttaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="94363" stop="95409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94663" g_stop="95109" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U598778" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94663" e_stop="95109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAACCAACTTGTATTACATACCTCTTACAAATCACTAACACACCAAATTGGACAATTCAAATGATACTCTAAATTTACATGATTCACACAAGGAATCAGTTAGACACCTTATATAGATGAGTAATTTATCCTTGATTTGACAGAGCCCCCGAGCTTTCTTCATTGCATACAACAGAAGTCTCCTTCAATTCAACTTAACACTGATCTTCAACAATTTCCTTTTAAATGATACCATAAACGTCTAATGTTCTGTTACCTTTGGAGTCGTAACATGGTCTAATGGGCGGGTACTTCCTGTCTCTGCATAAGGTCTGACAAATGTACGACGCCACCAGACTTCAAATGCTCTCTGAAGATTTGGACAATTATCACCTGACTTGAGGAAACTGCCTAACCAAGAAAGCAAAATGCTCTGCTGTTCCTCCAGAGGTAGTGTTAGGATT</genome_strand>
        <mrna_strand>AACACAACCAACTTGTATTACATACCTCTTACAAATCACTAACACACCAAATTGGACAATTCAAATGATACTCTAAATTTACATGATTCACACAAGGAATCAGTTAGACACCTTATATAGATGAGTAATTTATCCTTGATTCGACAGAGCCCCCGAGCTTTCTTCATTGCATACAACAGAAGTCTCCTTCAATTCAACTTAACACTGATCTTCAACAATTTCCTTTTAAATGATACCATAAACGTCTAATGTTCTGTTACCTTTGGAGTCGTAACATGGTCTAATGGGCGGGTACTTCCTGTCTCTGCATAAGGTCTGACAAATGTACGACGCCACCAGACTTCAAATGCTCTCTGAAGATTTGGACAATTATCACCTGACTTGAGGAAACTGCCTAACCAAGAAAGCAAAATGCTCTGCTGTTCCTCCAGAGGTAGTGTTAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570395" ref_strand="+" ref_description="SGN-U570395 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gcaatttttcaattcatataggaggggagctcatcattccactctgttaaatctctgatttggtggttcccttcatgcttgacatcaaagctttcattcaatcattttcaatgcctcttccttggacttttaaattaaaagatttggggttttcaagaaaatctcagatagctctctctgtttgtagttgagtatttgttgttttctctatttcaagaatttgggtgtttcaagaatcccttttgtcctgccattttacacctttaggagtggtgagtttcaactcttctttctttgtttcttgacaactatactgttaaaggtttgatcttttgttttgtttgctgtccttttggagaacgaaagaaaggaacaatttgtgttttttttattgttaagtgttggagtagtagctatcttttatcagaggggaaaagattagctctttgatgttttgtcctaattagtagatattcattcttatgatcaaagagttccttagttctgtgtagtcaacctgatttcaatttcatcatcccttaagtaaaaaaaatgcagaacttccccatgataacgcatagtggatgttgtaaatgccatatattgaattagttaggcattgagtcttttcaagaatggctgaaattagactgacaaaggtagaacaaggccaaaccaaaattaggaatgttccaattgctgtgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="-" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="99043" stop="97738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98744" g_stop="98038" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="-" ref_id="SGN-U570395" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98744" e_stop="98038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGCAGAACTTCCCCATGATAACGCATAGTGGATGTTGTAAATGCCATATATTGAATTAGTTAGGCATTGAGTCTTTTCAAGAATGGCTGAAATTAGACTGACAAAGGTAGAACAAGGCCAAACCAAAATTAGGAATGTTCCAATTGCTGTGACC</genome_strand>
        <mrna_strand>GCAATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGCAGAACTTCCCCATGATAACGCATAGTGGATGTTGTAAATGCCATATATTGAATTAGTTAGGCATTGAGTCTTTTCAAGAATGGCTGAAATTAGACTGACAAAGGTAGAACAAGGCCAAACCAAAATTAGGAATGTTCCAATTGCTGTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604309" ref_strand="+" ref_description="SGN-U604309 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaaaatctatgtgcccctctaatattaaaacagccttcatcggggtaaaatatatgggaatgggacttcgtttaagaatctgatcatatatatattcccggacatacaatttttaattaagagattttgaatttaaattttattttattttatttttttccgtattacattatttttactagggagcatggaaattttgcggcgcgaattctaaatgaaaaacaaaagaaacaaatagagaagacctaactatgagtatgatctgtttacccaatttaaaaatctcgaggctctttatatttcattttatttttaggacaaatatatgttgttgttctaattgaatatattcgataaataaagtaaacataaaggaattagagaaaaatttgataattgaagtagtgaaaaatgtaaattatggagtaatacctgttaacagaaaaattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="100378" stop="101430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100677" g_stop="101130" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U604309" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100677" e_stop="101130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACA</genome_strand>
        <mrna_strand>GCAAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGGGGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597270" ref_strand="+" ref_description="SGN-U597270 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348215|emb|CAO22925.1| (e_value=6e-19) unnamed; (*ATH) AT2G23755.1 (e_value=5e-18) |; ">
      <seq>aggatttcttcccctttagttaagccttaaattgataaatagatttactcgacaccgttaacaagtaatggtgaaatttatcaagttttgagttctcctcataaccatgaaaaaattttggtgaagggatgcaaaagtcctggtcaacatcatttcacaataaaatatactactgtacttgtttatcaatgaaagtagttggcttagatcatctaatcttcctggcacaacttcaaaggaagagtcaaatctctacaccagtagatacaacatgaaagcagaatcatcttctcaaaaacacatgaaatcatcaagatttacagtttctacgtgttcttcactattaatggctttcctttttgctctctctgcatctttccaattcaatgaccctgattggtatttgtggtttcctctatatgcaatggcttgccttgtcaacttggtcaatggatcaaacaaaatagccaaaactactctcttgttgggaaccatcttattcctcaaagatgtttgttttcttcaaggaatatctggaatttggtcatttgatatgagggagagagttgtgagggaaaaggttggaagtggacttgttattctctccatgtctatacaacttcaaaaaggaaaccctaataatacaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0111M10-2BuCD/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0111M10.2" temp_strand="+" temp_description="C02HBa0111M10.2  AC215385.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0111M10 sequenced_by:kribb upload_account_name:korea">
        <position start="101617" stop="102939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101917" g_stop="102311" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102312" i_stop="102383" i_length="72">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102384" g_stop="102639" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="651" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0111M10.2" gen_strand="+" ref_id="SGN-U597270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0111M10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101917" e_stop="102311"/>
          <exon e_start="102384" e_stop="102639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTCTTCCCCTTTAGTTAAGCCTTAAATTGATAAATAGATTTACTCGACACCGTTAACAAGTAATGGTGAAATTTATCAAGTTTTGAGTTCTCCTCATAACCATGAAAAAATTTTGGTGAAGGGATGCAAAAGTCCTGGTCAACATCATTTCACAATAAAATATACTACTGTACTTGTTTATCAATGAAAGTAGTTGGCTTAGATCATCTAATCTTCCTGGCACAACTTCAAAGGAAGAGTCAAATCTCTACACCAGTAGATACAACATGAAAGCAGAATCATCTTCTCAAAAACACATGAAATCATCAAGATTTACAGTTTCTACGTGTTCTTCACTATTAATGGCTTTCCTTTTTGCTCTCTCTGCATCTTTCCAATTCAATGACCCTGGTAATTACTCTTTCTTCATTTAGCTATCCATCCCTAAGTGAGATTTCATTTCCTTCTGTTTTTGGGTTTCAGATTGGTATTTGTGGTTTCCTCTATATGCAATGGCTTGCCTTGTCAACTTGGTCAATGGATCAAACAAAATAGCCAAAACTACTCTCTTGTTGGGAACCATCTTATTCCTCAAAGATGTTTGTTTTCTTCAAGGAATATCTGGAATTTGGTCATTTGATATGAGGGAGAGAGTTGTGAGGGAAAAGGTTGGAAGTGGACTTGTTATTCTCTCCATGTCTATACAACTTCAAAAAGGAAACCCTAATAATACAACCCT</genome_strand>
        <mrna_strand>AGGATTTCTTCCCCTTTAGTTAAGCCTTAAATTGATAAATAGATTTACTCGACACCGTTAACAAGTAATGGTGAAATTTATCAAGTTTTGAGTTCTCCTCATAACCATGAAAAAATTTTGGTGAAGGGATGCAAAAGTCCTGGTCAACATCATTTCACAATAAAATATACTACTGTACTTGTTTATCAATGAAAGTAGTTGGCTTAGATCATCTAATCTTCCTGGCACAACTTCAAAGGAAGAGTCAAATCTCTACACCAGTAGATACAACATGAAAGCAGAATCATCTTCTCAAAAACACATGAAATCATCAAGATTTACAGTTTCTACGTGTTCTTCACTATTAATGGCTTTCCTTTTTGCTCTCTCTGCATCTTTCCAATTCAATGACCCTG........................................................................ATTGGTATTTGTGGTTTCCTCTATATGCAATGGCTTGCCTTGTCAACTTGGTCAATGGATCAAACAAAATAGCCAAAACTACTCTCTTGTTGGGAACCATCTTATTCCTCAAAGATGTTTGTTTTCTTCAAGGAATATCTGGAATTTGGTCATTTGATATGAGGGAGAGAGTTGTGAGGGAAAAGGTTGGAAGTGGACTTGTTATTCTCTCCATGTCTATACAACTTCAAAAAGGAAACCCTAATAATACAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9064" PGL_stop="10597"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9064" e_stop="9697"/>
            <exon e_start="9935" e_stop="10597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9064" e_stop="9697" e_length="634"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.895">
            <gDNA_intron_boundary i_start="9698" i_stop="9934" i_length="237"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="9935" e_stop="10597" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9064" stop="9697"/>
              <exon start="9935" stop="10049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9620" stop="9697"/>
              <exon start="9935" stop="10597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTTTATCTCCGAAAGCTTCAGAGTTAGTTTCTTCGTCTATCAATGGCGTTCAAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG : GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGAAAGAGTTTCAACAAATGGATGAGAAGAAATCAGC</gDNA_template>
            <first_frame> F  S  L  S  P  K  A  S  E  L  V  S  S  S  I  N  G  V  Q  K  T  C  S  S  T  S  F  R  F  I  Q  N  *  S  S  F  P  I  N  M  P  Y  L  F  L  N  H  D  Q  I  D  G  F  S  *  S  *  K  D  S  P  R  S  R  R  G  C  F  F  P  S  I  S  P  P  K  L  F  V  P  I  I  S  N  L  V  G  A  P  V  F  S  H  R  *  K  A  P  S  G  I  E  R  D  G  H  W  *  R  *  D  K  T  G  C  T  H  L  T  A  A  T  K  I  V  A  G  D  *  V  R  S  R  G  G  E  I  H  G  G  G  C  K  E  G  Y  E  I  G  T  T  G  G  G  E  I  E  A  E  A  D  G  E  *  L  D  F  F  S  G  I  F  S  D  L  Q  W  R  F  F  K  L  R  S  S  H  R  I  R  K  D  A  R  S  I  R  N  C  T  C  F  G  K  R  R  I  P  *  A  *  *   : G  K  P  T  K  L  F  Q  I  S  K  T  R  W  *  L  L  *  G  T  A  P  V  G  P  F  P  N  T  P  T  Y  T  I  E  H  T  L  S  S  *  F  Q  T  F  G  K  K  I  M  F  V  L  K  S  V  F  C  K  N  *  N  C  Y  L  L  K  L  F  *  A  N  S  L  V  E  K  R  F  H  R  V  Q  K  L  V  N  P  T  P  E  G  N  E  I  Q  L  F  P  F  H  F  T  A  P  L  V  V  F  S  N  T  *  R  K  *  Q  F  A  F  L  V  I  G  I  Q  N  F  K  F  V  S  K  C  V  R  D  C  V  *  *  Y  R  L  I  S  E  S  N  L  D  E  C  L  Q  M  R  R  C  F  S  S  H  Y  V  I  R  R  V  K  W  S  S  I  V  L  P  K  H  F  G  P  L  F  C  C  Y  R  W  *  K  P  W  K  A  *  C  Q  G  L  W  L  S  Q  M  T  H  K  *  *  K  S  F  N  K  W  M  R  R  N  Q  </first_frame>
            <second_frame>  S  L  Y  L  R  K  L  Q  S  *  F  L  R  L  S  M  A  F  K  K  L  V  A  Q  R  L  F  D  S  Y  K  I  S  R  P  S  L  S  T  C  R  I  C  S  S  T  M  T  K  S  M  A  S  P  N  P  E  R  I  A  P  D  P  G  E  G  A  F  F  R  R  S  L  H  R  S  S  L  F  Q  S  L  A  T  S  S  E  L  R  S  F  P  I  G  E  K  L  R  Q  E  L  R  G  M  D  I  G  R  D  R  I  R  L  D  A  L  I  S  P  P  Q  Q  K  L  L  P  E  I  E  S  E  A  E  E  E  K  F  T  V  A  D  A  K  K  V  M  R  L  A  Q  L  E  V  V  K  S  R  L  R  Q  M  E  N  D  W  I  S  F  P  E  F  F  Q  I  C  N  G  A  S  S  N  S  D  Q  A  I  E  F  A  K  M  L  D  Q  S  G  I  V  L  V  L  G  N  V  V  F  L  K  P  D  K  :  E  S  Q  Q  S  Y  S  R  S  L  K  R  D  G  D  F  Y  K  G  L  H  Q  L  D  H  F  Q  T  P  Q  L  T  P  L  N  T  P  F  P  L  N  S  K  H  L  G  R  K  *  C  L  S  *  K  V  F  F  A  K  T  E  I  V  I  Y  *  N  F  F  K  L  I  V  W  W  R  R  G  S  I  E  S  K  N  *  *  I  L  P  Q  K  E  T  K  Y  S  Y  S  L  S  T  L  Q  L  L  *  L  C  F  L  I  L  D  A  S  D  N  L  P  S  L  S  *  E  F  R  I  L  S  L  C  L  S  A  C  V  I  V  S  D  N  I  D  *  L  A  N  P  I  *  M  N  A  C  K  *  E  D  V  S  H  L  I  M  *  *  G  A  *  S  G  V  L  L  F  Y  P  S  I  L  V  P  C  F  V  A  T  G  G  E  S  H  G  R  L  N  A  K  A  F  G  S  A  K  *  P  T  N  D  E  R  V  S  T  N  G  *  E  E  I  S </second_frame>
            <third_frame>   L  F  I  S  E  S  F  R  V  S  F  F  V  Y  Q  W  R  S  K  N  L  *  L  N  V  F  S  I  H  T  K  L  V  V  L  P  Y  Q  H  A  V  F  V  P  Q  P  *  P  N  R  W  L  L  L  I  L  K  G  *  P  Q  I  P  A  R  V  L  F  S  V  D  L  S  T  E  A  L  C  S  N  H  *  Q  P  R  R  S  S  G  L  F  P  S  V  K  S  S  V  R  N  *  E  G  W  T  L  V  E  I  G  *  D  W  M  H  S  S  H  R  R  N  K  N  C  C  R  R  L  S  Q  K  P  R  R  R  N  S  R  W  R  M  Q  R  R  L  *  D  W  H  N  W  R  W  *  N  R  G  *  G  R  W  R  M  T  G  F  L  F  R  N  F  F  R  S  A  M  A  L  L  Q  T  P  I  K  P  *  N  S  Q  R  C  S  I  N  Q  E  L  Y  L  F  W  E  T  S  Y  S  L  S  L  I  R :   K  A  N  K  V  I  P  D  L  *  N  E  M  V  T  F  I  R  D  C  T  S  W  T  I  S  K  H  P  N  L  H  H  *  T  H  P  F  L  L  I  P  N  I  W  E  E  N  N  V  C  P  K  K  C  F  L  Q  K  L  K  L  L  F  T  E  T  F  L  S  *  *  F  G  G  E  E  V  P  *  S  P  K  I  S  K  S  Y  P  R  R  K  R  N  T  A  I  P  F  P  L  Y  S  S  S  S  C  V  F  *  Y  L  T  Q  V  T  I  C  L  P  C  H  R  N  S  E  F  *  V  C  V  *  V  R  A  *  L  C  L  I  I  *  I  N  *  R  I  Q  F  R  *  M  L  A  N  E  K  M  F  L  I  S  L  C  D  K  A  R  E  V  E  F  Y  C  F  T  Q  A  F  W  S  L  V  L  L  L  Q  V  V  K  A  M  E  G  L  M  P  R  P  L  A  Q  P  N  D  P  Q  M  M  K  E  F  Q  Q  M  D  E  K  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9095" stop="9697"/>
                    <exon start="9935" stop="10081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLRLSMAFKKLVAQRLFDSYKISRPSLSTCRICSSTMTKSMASPNPERIAPDPGEGAFFRRSLHRSSLFQSLATSSELRSFPIGEKLRQELRGMDIGRDRIRLDALISPPQQKLLPEIESEAEEEKFTVADAKKVMRLAQLEVVKSRLRQMENDWISFPEFFQICNGASSNSDQAIEFAKMLDQSGIVLVLGNVVFLKPDKESQQSYSRSLKRDGDFYKGLHQLDHFQTPQLTPLNTPFPLNSKHLGRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10389" stop="10595"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLANEKMFLISLCDKAREVEFYCFTQAFWSLVLLLQVVKAMEGLMPRPLAQPNDPQMMKEFQQMDEKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20791" PGL_stop="19864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20791" e_stop="19864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="20791" e_stop="19864" e_length="928"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20791" stop="19864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAACATTTCACTCAAAGCCTCGTAAAAGAATCGGAGCTACTACTGGTGTACCAAAAAGTCTAGCAGTGGAACTACGCAGTCTTTTGTGCAAAACACGTTAATTCATTATCAACTTTCTGGCCTTTTTAATTTCAAATCATTTCTCCATCTCATTGCAATTTGTTCGATGATTCACATCGTGCGTTATTATCTCTCCCAGCACCCTTCTGTTGTAAATTTTCGTTGGAGTCATAGCCAATCATGGGGTAACACGTGGTTCTTCCTCTTCACCTCCATTGCTGCCTATGTTATCTTCTCCCTCTTCCTCCACCTTTTTCTCTGCCTCCTCTTCCGCAACCGCCGTCCTCTCCCTCTCGGCCCTATCCCTGCCGTTCACTCCCTCTCTATGGTCCTAATCTCCCTCACCATCTTCACCGGCATACTCCTCTCCGCCGCCGCTGAAATCCGCGAAACTCGATGGTTCTGGCGCCGTAACAAAACCACCGCTTTCCAATGGCTCCTCTGTTTCCCTCTCGGCACGCGCCCTTCCGGACGTGTCTTCTTTTGGTCCTACATTTTCTACCTATCTCGCTTCCTCCACACGCTACGTACTTTCTTCTCCATTCTCCGTCGTCGAAGACTCTCCTTCTTTCAACTCTTCAACCACTCCATACTCATATTTATGTCCTTCCTGTGGCTAGAATTCTCGCAATCGTTTCAAGTACTTGCAATACTATTTACAACGCTTTTATATTCTGCGGTTTACGGTTACAGATTTTGGACGGCGATTGGATTGCCAAGCGCGTGTTTCCCCTTTGTTGTAAGCTGTCAGATTCTGTTACTGGGATGTCACGTTGTGTGCCATGTTGGGGTGCTTTTGCTCCATTTCATGAAAGGTGGGTGTAACGGAATTGGGGCATGGCTTTTCAATTCAGTGCTCAATGCTGC</gDNA_template>
            <first_frame> R  T  F  H  S  K  P  R  K  R  I  G  A  T  T  G  V  P  K  S  L  A  V  E  L  R  S  L  L  C  K  T  R  *  F  I  I  N  F  L  A  F  L  I  S  N  H  F  S  I  S  L  Q  F  V  R  *  F  T  S  C  V  I  I  S  P  S  T  L  L  L  *  I  F  V  G  V  I  A  N  H  G  V  T  R  G  S  S  S  S  P  P  L  L  P  M  L  S  S  P  S  S  S  T  F  F  S  A  S  S  S  A  T  A  V  L  S  L  S  A  L  S  L  P  F  T  P  S  L  W  S  *  S  P  S  P  S  S  P  A  Y  S  S  P  P  P  L  K  S  A  K  L  D  G  S  G  A  V  T  K  P  P  L  S  N  G  S  S  V  S  L  S  A  R  A  L  P  D  V  S  S  F  G  P  T  F  S  T  Y  L  A  S  S  T  R  Y  V  L  S  S  P  F  S  V  V  E  D  S  P  S  F  N  S  S  T  T  P  Y  S  Y  L  C  P  S  C  G  *  N  S  R  N  R  F  K  Y  L  Q  Y  Y  L  Q  R  F  Y  I  L  R  F  T  V  T  D  F  G  R  R  L  D  C  Q  A  R  V  S  P  L  L  *  A  V  R  F  C  Y  W  D  V  T  L  C  A  M  L  G  C  F  C  S  I  S  *  K  V  G  V  T  E  L  G  H  G  F  S  I  Q  C  S  M  L  </first_frame>
            <second_frame>  E  H  F  T  Q  S  L  V  K  E  S  E  L  L  L  V  Y  Q  K  V  *  Q  W  N  Y  A  V  F  C  A  K  H  V  N  S  L  S  T  F  W  P  F  *  F  Q  I  I  S  P  S  H  C  N  L  F  D  D  S  H  R  A  L  L  S  L  P  A  P  F  C  C  K  F  S  L  E  S  *  P  I  M  G  *  H  V  V  L  P  L  H  L  H  C  C  L  C  Y  L  L  P  L  P  P  P  F  S  L  P  P  L  P  Q  P  P  S  S  P  S  R  P  Y  P  C  R  S  L  P  L  Y  G  P  N  L  P  H  H  L  H  R  H  T  P  L  R  R  R  *  N  P  R  N  S  M  V  L  A  P  *  Q  N  H  R  F  P  M  A  P  L  F  P  S  R  H  A  P  F  R  T  C  L  L  L  V  L  H  F  L  P  I  S  L  P  P  H  A  T  Y  F  L  L  H  S  P  S  S  K  T  L  L  L  S  T  L  Q  P  L  H  T  H  I  Y  V  L  P  V  A  R  I  L  A  I  V  S  S  T  C  N  T  I  Y  N  A  F  I  F  C  G  L  R  L  Q  I  L  D  G  D  W  I  A  K  R  V  F  P  L  C  C  K  L  S  D  S  V  T  G  M  S  R  C  V  P  C  W  G  A  F  A  P  F  H  E  R  W  V  *  R  N  W  G  M  A  F  Q  F  S  A  Q  C  C </second_frame>
            <third_frame>   N  I  S  L  K  A  S  *  K  N  R  S  Y  Y  W  C  T  K  K  S  S  S  G  T  T  Q  S  F  V  Q  N  T  L  I  H  Y  Q  L  S  G  L  F  N  F  K  S  F  L  H  L  I  A  I  C  S  M  I  H  I  V  R  Y  Y  L  S  Q  H  P  S  V  V  N  F  R  W  S  H  S  Q  S  W  G  N  T  W  F  F  L  F  T  S  I  A  A  Y  V  I  F  S  L  F  L  H  L  F  L  C  L  L  F  R  N  R  R  P  L  P  L  G  P  I  P  A  V  H  S  L  S  M  V  L  I  S  L  T  I  F  T  G  I  L  L  S  A  A  A  E  I  R  E  T  R  W  F  W  R  R  N  K  T  T  A  F  Q  W  L  L  C  F  P  L  G  T  R  P  S  G  R  V  F  F  W  S  Y  I  F  Y  L  S  R  F  L  H  T  L  R  T  F  F  S  I  L  R  R  R  R  L  S  F  F  Q  L  F  N  H  S  I  L  I  F  M  S  F  L  W  L  E  F  S  Q  S  F  Q  V  L  A  I  L  F  T  T  L  L  Y  S  A  V  Y  G  Y  R  F  W  T  A  I  G  L  P  S  A  C  F  P  F  V  V  S  C  Q  I  L  L  L  G  C  H  V  V  C  H  V  G  V  L  L  L  H  F  M  K  G  G  C  N  G  I  G  A  W  L  F  N  S  V  L  N  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20765" stop="19866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNRSYYWCTKKSSSGTTQSFVQNTLIHYQLSGLFNFKSFLHLIAICSMIHIVRYYLSQHPSVVNFRWSHSQSWGNTWFFLFTSIAAYVIFSLFLHLFLCLLFRNRRPLPLGPIPAVHSLSMVLISLTIFTGILLSAAAEIRETRWFWRRNKTTAFQWLLCFPLGTRPSGRVFFWSYIFYLSRFLHTLRTFFSILRRRRLSFFQLFNHSILIFMSFLWLEFSQSFQVLAILFTTLLYSAVYGYRFWTAIGLPSACFPFVVSCQILLLGCHVVCHVGVLLLHFMKGGCNGIGAWLFNSVLNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22671" PGL_stop="24764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22671" e_stop="22872"/>
            <exon e_start="23849" e_stop="24764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.710" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22671" e_stop="22872" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.710">
            <gDNA_intron_boundary i_start="22873" i_stop="23848" i_length="976"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23849" e_stop="24764" e_length="916"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22671" stop="22872"/>
              <exon start="23849" stop="24764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGACCGTCTCCCGGGTATAACTGAAATTAGAGATGAATTTAGGTAAGAACTCTGGGAGATAGACAGGGTGAAAAGCCCTAGATTCTTTCTTCTATGGAGTCAATACTTGTTCAATACTAATAATTGAAGGGCTCAATTACCGCATTTTAGCTTCGATCCATTCATTGCCTTTGAATCCCCTTGCTTTTCTTCTGAATCG : GTTTTGGGTGTTTGCAAACTTCTGATATTTCCAATTCAAATAAAACTGAGTGAGATGCAGGACTCAACTACCAGGGCATTTGAAAGCTCTTCTTCTTCCTCTGGAGATGGGAACAATGATGCTGGTGATTTTGAATGCAACATATGTTTTGAATTGGCCCAAGATCCCATTGTGACACTCTGTGGTCACCTTTTCTGTTGGCCATGTCTGTATAGATGGTTACGTCTTCACTCACAGTGCCATGAATGCCCTGTCTGTAAGGCACTTATTCAAGAGGAGAAGTTAGTTCCACTTTATGGAAGAGGAAGAACTTCTACTGATCCCCGATCAAAACCAATTCCTGGCCTTGAAATTCCTAGTAGACCTGCTGGACAACGACCTGAAACTGCTCCTCAACCTGAACCAAATCATTTTCCTAATCATGGATTTGGGCACATGGGAGGATTGTTTCCAACAGCAACTGCAAGATTTGGTAATTTTACTATGTCTGCTGGTTTTGGTGGATTGCTCCCTTCATTGCTCAGCTTCCAGTTTCATGGATTTCCTGGTCCGACAGCATATCCTACCGCATCAAATCACCATTTTGGATATACTCCTGCATATCACGGGCCACATGTTCGTAACGCTCAAGACACTGCTCAAGGACAAGCAGATAGCAATCTCAAGTTAATGTTTTTACTTGTTGGTTTTCTTGTGCTAATTTATTTGTTAGGCTAAAGAATGGATTCAGTCTATCCCTGATGCTAATGTTGGCTATCAGATTTTGTGCATGTGGATATGTCAATTCTGCACTCACCTTGAAGTTACTACTAACTTTGGTGATTTTATAGATGCGAGCACTCTGTTACTTTAATGTAACAAGTTTATATCTGTGTAATGTGTATATTTTGTATACTTAAAGTGGTTCTAGCTCGTT</gDNA_template>
            <first_frame> I  *  P  S  P  G  Y  N  *  N  *  R  *  I  *  V  R  T  L  G  D  R  Q  G  E  K  P  *  I  L  S  S  M  E  S  I  L  V  Q  Y  *  *  L  K  G  S  I  T  A  F  *  L  R  S  I  H  C  L  *  I  P  L  L  F  F  *  I   : G  F  G  C  L  Q  T  S  D  I  S  N  S  N  K  T  E  *  D  A  G  L  N  Y  Q  G  I  *  K  L  F  F  F  L  W  R  W  E  Q  *  C  W  *  F  *  M  Q  H  M  F  *  I  G  P  R  S  H  C  D  T  L  W  S  P  F  L  L  A  M  S  V  *  M  V  T  S  S  L  T  V  P  *  M  P  C  L  *  G  T  Y  S  R  G  E  V  S  S  T  L  W  K  R  K  N  F  Y  *  S  P  I  K  T  N  S  W  P  *  N  S  *  *  T  C  W  T  T  T  *  N  C  S  S  T  *  T  K  S  F  S  *  S  W  I  W  A  H  G  R  I  V  S  N  S  N  C  K  I  W  *  F  Y  Y  V  C  W  F  W  W  I  A  P  F  I  A  Q  L  P  V  S  W  I  S  W  S  D  S  I  S  Y  R  I  K  S  P  F  W  I  Y  S  C  I  S  R  A  T  C  S  *  R  S  R  H  C  S  R  T  S  R  *  Q  S  Q  V  N  V  F  T  C  W  F  S  C  A  N  L  F  V  R  L  K  N  G  F  S  L  S  L  M  L  M  L  A  I  R  F  C  A  C  G  Y  V  N  S  A  L  T  L  K  L  L  L  T  L  V  I  L  *  M  R  A  L  C  Y  F  N  V  T  S  L  Y  L  C  N  V  Y  I  L  Y  T  *  S  G  S  S  S   </first_frame>
            <second_frame>  F  D  R  L  P  G  I  T  E  I  R  D  E  F  R  *  E  L  W  E  I  D  R  V  K  S  P  R  F  F  L  L  W  S  Q  Y  L  F  N  T  N  N  *  R  A  Q  L  P  H  F  S  F  D  P  F  I  A  F  E  S  P  C  F  S  S  E  S  :  V  L  G  V  C  K  L  L  I  F  P  I  Q  I  K  L  S  E  M  Q  D  S  T  T  R  A  F  E  S  S  S  S  S  S  G  D  G  N  N  D  A  G  D  F  E  C  N  I  C  F  E  L  A  Q  D  P  I  V  T  L  C  G  H  L  F  C  W  P  C  L  Y  R  W  L  R  L  H  S  Q  C  H  E  C  P  V  C  K  A  L  I  Q  E  E  K  L  V  P  L  Y  G  R  G  R  T  S  T  D  P  R  S  K  P  I  P  G  L  E  I  P  S  R  P  A  G  Q  R  P  E  T  A  P  Q  P  E  P  N  H  F  P  N  H  G  F  G  H  M  G  G  L  F  P  T  A  T  A  R  F  G  N  F  T  M  S  A  G  F  G  G  L  L  P  S  L  L  S  F  Q  F  H  G  F  P  G  P  T  A  Y  P  T  A  S  N  H  H  F  G  Y  T  P  A  Y  H  G  P  H  V  R  N  A  Q  D  T  A  Q  G  Q  A  D  S  N  L  K  L  M  F  L  L  V  G  F  L  V  L  I  Y  L  L  G  *  R  M  D  S  V  Y  P  *  C  *  C  W  L  S  D  F  V  H  V  D  M  S  I  L  H  S  P  *  S  Y  Y  *  L  W  *  F  Y  R  C  E  H  S  V  T  L  M  *  Q  V  Y  I  C  V  M  C  I  F  C  I  L  K  V  V  L  A  R  </second_frame>
            <third_frame>   L  T  V  S  R  V  *  L  K  L  E  M  N  L  G  K  N  S  G  R  *  T  G  *  K  A  L  D  S  F  F  Y  G  V  N  T  C  S  I  L  I  I  E  G  L  N  Y  R  I  L  A  S  I  H  S  L  P  L  N  P  L  A  F  L  L  N  R :   F  W  V  F  A  N  F  *  Y  F  Q  F  K  *  N  *  V  R  C  R  T  Q  L  P  G  H  L  K  A  L  L  L  P  L  E  M  G  T  M  M  L  V  I  L  N  A  T  Y  V  L  N  W  P  K  I  P  L  *  H  S  V  V  T  F  S  V  G  H  V  C  I  D  G  Y  V  F  T  H  S  A  M  N  A  L  S  V  R  H  L  F  K  R  R  S  *  F  H  F  M  E  E  E  E  L  L  L  I  P  D  Q  N  Q  F  L  A  L  K  F  L  V  D  L  L  D  N  D  L  K  L  L  L  N  L  N  Q  I  I  F  L  I  M  D  L  G  T  W  E  D  C  F  Q  Q  Q  L  Q  D  L  V  I  L  L  C  L  L  V  L  V  D  C  S  L  H  C  S  A  S  S  F  M  D  F  L  V  R  Q  H  I  L  P  H  Q  I  T  I  L  D  I  L  L  H  I  T  G  H  M  F  V  T  L  K  T  L  L  K  D  K  Q  I  A  I  S  S  *  C  F  Y  L  L  V  F  L  C  *  F  I  C  *  A  K  E  W  I  Q  S  I  P  D  A  N  V  G  Y  Q  I  L  C  M  W  I  C  Q  F  C  T  H  L  E  V  T  T  N  F  G  D  F  I  D  A  S  T  L  L  L  *  C  N  K  F  I  S  V  *  C  V  Y  F  V  Y  L  K  W  F  *  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22801" stop="22872"/>
                    <exon start="23849" stop="24565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQLPHFSFDPFIAFESPCFSSESVLGVCKLLIFPIQIKLSEMQDSTTRAFESSSSSSGDGNNDAGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLRLHSQCHECPVCKALIQEEKLVPLYGRGRTSTDPRSKPIPGLEIPSRPAGQRPETAPQPEPNHFPNHGFGHMGGLFPTATARFGNFTMSAGFGGLLPSLLSFQFHGFPGPTAYPTASNHHFGYTPAYHGPHVRNAQDTAQGQADSNLKLMFLLVGFLVLIYLLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28926" PGL_stop="29638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28926" e_stop="29638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="28926" e_stop="29638" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28926" stop="29638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACTTAGGGGCACCCCCCTCTGGTTCTTCATTTTCTCTTTATTATCCACACTAAATGGTACTGATTCTGCAATCACTGACACTGATTCCAATTCCAGTCTCCATTTTAAAGAAGCGCCGCAGTTCTATAATTCCCCGAGTTGTTCTTCAATTAATTCTTCAGTAAATGTAGCTATGACTCTTGATATAGCTTATCTCAGGGGATCTATGGCTGCTATTCTTTCAGTGCTACAACACTCTTCTTGCCCAGAAAACATTGTATTCCATTTTGTCTCTTCTTCATCTGCTGAATCCACACATTTGAACTTGACTATTACGAAATCATTTCCGTATCTTCAATTCACAATTTATCCAATTCAACATGTTGCAGCCGTAGCAGGACTAATTTCAACCTCAATTCGCTCTGCTTTAGATTGTCCTTTAAATTATGCTCGCAATTATCTTGCTGATCTACTTCCTCAACAACTTCAAAAGGTGGTTTATCTTGATTCGGACCTTGTTTTAGTAGACGACATTGCTGAATTAGCAGCAACGCCTCTAACAGGGGACTCTGTTTTAGCAGCACCTGAATACTGCAATGCTAATTTTACTACTTACTTCACGCCGACTTTTTGGTCGAATCCTTCTCTTTCCTTGACTTTTGCGAATCGAAATCGGAGGCCTTGTTATTTTAATACTGGGGTGATGGTTATTGATCTAGAGAGATGGAGAG</gDNA_template>
            <first_frame> *  T  *  G  H  P  P  L  V  L  H  F  L  F  I  I  H  T  K  W  Y  *  F  C  N  H  *  H  *  F  Q  F  Q  S  P  F  *  R  S  A  A  V  L  *  F  P  E  L  F  F  N  *  F  F  S  K  C  S  Y  D  S  *  Y  S  L  S  Q  G  I  Y  G  C  Y  S  F  S  A  T  T  L  F  L  P  R  K  H  C  I  P  F  C  L  F  F  I  C  *  I  H  T  F  E  L  D  Y  Y  E  I  I  S  V  S  S  I  H  N  L  S  N  S  T  C  C  S  R  S  R  T  N  F  N  L  N  S  L  C  F  R  L  S  F  K  L  C  S  Q  L  S  C  *  S  T  S  S  T  T  S  K  G  G  L  S  *  F  G  P  C  F  S  R  R  H  C  *  I  S  S  N  A  S  N  R  G  L  C  F  S  S  T  *  I  L  Q  C  *  F  Y  Y  L  L  H  A  D  F  L  V  E  S  F  S  F  L  D  F  C  E  S  K  S  E  A  L  L  F  *  Y  W  G  D  G  Y  *  S  R  E  M  E   </first_frame>
            <second_frame>  K  L  R  G  T  P  L  W  F  F  I  F  S  L  L  S  T  L  N  G  T  D  S  A  I  T  D  T  D  S  N  S  S  L  H  F  K  E  A  P  Q  F  Y  N  S  P  S  C  S  S  I  N  S  S  V  N  V  A  M  T  L  D  I  A  Y  L  R  G  S  M  A  A  I  L  S  V  L  Q  H  S  S  C  P  E  N  I  V  F  H  F  V  S  S  S  S  A  E  S  T  H  L  N  L  T  I  T  K  S  F  P  Y  L  Q  F  T  I  Y  P  I  Q  H  V  A  A  V  A  G  L  I  S  T  S  I  R  S  A  L  D  C  P  L  N  Y  A  R  N  Y  L  A  D  L  L  P  Q  Q  L  Q  K  V  V  Y  L  D  S  D  L  V  L  V  D  D  I  A  E  L  A  A  T  P  L  T  G  D  S  V  L  A  A  P  E  Y  C  N  A  N  F  T  T  Y  F  T  P  T  F  W  S  N  P  S  L  S  L  T  F  A  N  R  N  R  R  P  C  Y  F  N  T  G  V  M  V  I  D  L  E  R  W  R  </second_frame>
            <third_frame>   N  L  G  A  P  P  S  G  S  S  F  S  L  Y  Y  P  H  *  M  V  L  I  L  Q  S  L  T  L  I  P  I  P  V  S  I  L  K  K  R  R  S  S  I  I  P  R  V  V  L  Q  L  I  L  Q  *  M  *  L  *  L  L  I  *  L  I  S  G  D  L  W  L  L  F  F  Q  C  Y  N  T  L  L  A  Q  K  T  L  Y  S  I  L  S  L  L  H  L  L  N  P  H  I  *  T  *  L  L  R  N  H  F  R  I  F  N  S  Q  F  I  Q  F  N  M  L  Q  P  *  Q  D  *  F  Q  P  Q  F  A  L  L  *  I  V  L  *  I  M  L  A  I  I  L  L  I  Y  F  L  N  N  F  K  R  W  F  I  L  I  R  T  L  F  *  *  T  T  L  L  N  *  Q  Q  R  L  *  Q  G  T  L  F  *  Q  H  L  N  T  A  M  L  I  L  L  L  T  S  R  R  L  F  G  R  I  L  L  F  P  *  L  L  R  I  E  I  G  G  L  V  I  L  I  L  G  *  W  L  L  I  *  R  D  G  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28927" stop="29637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRGTPLWFFIFSLLSTLNGTDSAITDTDSNSSLHFKEAPQFYNSPSCSSINSSVNVAMTLDIAYLRGSMAAILSVLQHSSCPENIVFHFVSSSSAESTHLNLTITKSFPYLQFTIYPIQHVAAVAGLISTSIRSALDCPLNYARNYLADLLPQQLQKVVYLDSDLVLVDDIAELAATPLTGDSVLAAPEYCNANFTTYFTPTFWSNPSLSLTFANRNRRPCYFNTGVMVIDLERWR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40877" PGL_stop="37604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40877" e_stop="40657"/>
            <exon e_start="40563" e_stop="40471"/>
            <exon e_start="39665" e_stop="39587"/>
            <exon e_start="39110" e_stop="39032"/>
            <exon e_start="38876" e_stop="38837"/>
            <exon e_start="38754" e_stop="38620"/>
            <exon e_start="38478" e_stop="38341"/>
            <exon e_start="38039" e_stop="37604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.667" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.993" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.993"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40877" e_stop="40657" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.667">
            <gDNA_intron_boundary i_start="40656" i_stop="40564" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40563" e_stop="40471" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.839">
            <gDNA_intron_boundary i_start="40470" i_stop="39666" i_length="805"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="39665" e_stop="39587" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39586" i_stop="39111" i_length="476"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39110" e_stop="39032" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39031" i_stop="38877" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38876" e_stop="38837" e_length="40"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38836" i_stop="38755" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38754" e_stop="38620" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38619" i_stop="38479" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="38478" e_stop="38341" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38340" i_stop="38040" i_length="301"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="38039" e_stop="37604" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40877" stop="40657"/>
              <exon start="40563" stop="40471"/>
              <exon start="39665" stop="39587"/>
              <exon start="39110" stop="39032"/>
              <exon start="38876" stop="38837"/>
              <exon start="38754" stop="38620"/>
              <exon start="38478" stop="38341"/>
              <exon start="38039" stop="37604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTTGCCGGCTGCCAAATCAACCGGCTGTTATTCATCTCCGGCAGGGTCAAACTGCCGGAATATATTCTATTAAAACGCCACAGTTTTCATCCAATATTAAATGCAGTGTAGGTGAAGAATCCAGCACTAAAAATCCGGATTTGAAAAATCGAATGTTCATTCTGGGGATGGGTTTCGTAGGAAAATTCTTGGCTGCAGATTTGAAAAGCAATGGATG : GGAAGTTACAGGAACTTGTACCAGTACTGCACGGAAGAAGAAATTAGAGGAAATGGGGTTGCATGCGCACATATTTGACGCCAATGAACCACA : ACAGGAAGTCCTCGATATCTTGAAATTCCATTCACATCTTCTTATCTCCATCCCTCCAGTTTTGGGTGTTGGTGATCCG : ATGCTTCGGCATAAAGAATTGCTAAAAGAAAGACTAAAGGATGGTAACCTCCAGTGGCTTGGTTACTTGTCATCAACAG : GTGTTTATGGAGACTCTGGTGGTGCATTGGTTGATGAAGA : GTTTCCACCTAGCTCGACGACTGAATTGGCCAAAGCAAGGATAGCTGCAGAGGAAGGATGGTTACATCTGGCTTGTGATGGAAGGGTCTCTGCCCAAATATTTAGATTGGGTGGCATATATGGTCCTGGTAGAAG : TGCTGTTGACACTATTCTCAAGCAAGAGCCTCTGTCTAAAGGTCAGAAGATGAGATTCTCCAGGCATTATACCTCACGTATTCACGTTGCTGACATCTGTCAGGCTCTTAAGGCCAGCATACAGAGGCCATCTCCTGG : GCAGATATACAATGTAGTTGATGACGATCCTGCTCCTAGAGAGCAGGTATTTAAGTTTGCTAGGAACTTGGTTGAGGAGAAATGGCCAGGCCACCTAATCTTCAACAACTCTGCTGAAGAGGTAAAGTCTCTAATCCCGCAGGGAGGTTCAAGGGGAGAGAAGCGAGTCTCCAATAAACGCATTAAAACGGAACTGGGAGTGAATCTGCTTTACCCTACCTATGAATCTGGATTGCGGAGCATTATTGAACGCATAGAAGTTCCATTTGGCGTAAGTTGATTGCTCTATCATCAGACCGGGAATGGAAGGTTTCCAATGTATGTGGTGTTTAGGATGAAAAGATTGAGCTATTAGGATGAAGTAATTTTATCGACGTGATGTAGCTCAGAATGCTGGCTGATATGACAACTTGTTATCCTTTTTATTTTTTTTCAC</gDNA_template>
            <first_frame> E  I  C  R  L  P  N  Q  P  A  V  I  H  L  R  Q  G  Q  T  A  G  I  Y  S  I  K  T  P  Q  F  S  S  N  I  K  C  S  V  G  E  E  S  S  T  K  N  P  D  L  K  N  R  M  F  I  L  G  M  G  F  V  G  K  F  L  A  A  D  L  K  S  N  G  W :   E  V  T  G  T  C  T  S  T  A  R  K  K  K  L  E  E  M  G  L  H  A  H  I  F  D  A  N  E  P  Q :   Q  E  V  L  D  I  L  K  F  H  S  H  L  L  I  S  I  P  P  V  L  G  V  G  D  P  :  M  L  R  H  K  E  L  L  K  E  R  L  K  D  G  N  L  Q  W  L  G  Y  L  S  S  T   : G  V  Y  G  D  S  G  G  A  L  V  D  E  E :   F  P  P  S  S  T  T  E  L  A  K  A  R  I  A  A  E  E  G  W  L  H  L  A  C  D  G  R  V  S  A  Q  I  F  R  L  G  G  I  Y  G  P  G  R  S :   A  V  D  T  I  L  K  Q  E  P  L  S  K  G  Q  K  M  R  F  S  R  H  Y  T  S  R  I  H  V  A  D  I  C  Q  A  L  K  A  S  I  Q  R  P  S  P  G :   Q  I  Y  N  V  V  D  D  D  P  A  P  R  E  Q  V  F  K  F  A  R  N  L  V  E  E  K  W  P  G  H  L  I  F  N  N  S  A  E  E  V  K  S  L  I  P  Q  G  G  S  R  G  E  K  R  V  S  N  K  R  I  K  T  E  L  G  V  N  L  L  Y  P  T  Y  E  S  G  L  R  S  I  I  E  R  I  E  V  P  F  G  V  S  *  L  L  Y  H  Q  T  G  N  G  R  F  P  M  Y  V  V  F  R  M  K  R  L  S  Y  *  D  E  V  I  L  S  T  *  C  S  S  E  C  W  L  I  *  Q  L  V  I  L  F  I  F  F  H </first_frame>
            <second_frame>  R  F  A  G  C  Q  I  N  R  L  L  F  I  S  G  R  V  K  L  P  E  Y  I  L  L  K  R  H  S  F  H  P  I  L  N  A  V  *  V  K  N  P  A  L  K  I  R  I  *  K  I  E  C  S  F  W  G  W  V  S  *  E  N  S  W  L  Q  I  *  K  A  M  D   : G  K  L  Q  E  L  V  P  V  L  H  G  R  R  N  *  R  K  W  G  C  M  R  T  Y  L  T  P  M  N  H   : N  R  K  S  S  I  S  *  N  S  I  H  I  F  L  S  P  S  L  Q  F  W  V  L  V  I  R :   C  F  G  I  K  N  C  *  K  K  D  *  R  M  V  T  S  S  G  L  V  T  C  H  Q  Q  :  V  F  M  E  T  L  V  V  H  W  L  M  K   : S  F  H  L  A  R  R  L  N  W  P  K  Q  G  *  L  Q  R  K  D  G  Y  I  W  L  V  M  E  G  S  L  P  K  Y  L  D  W  V  A  Y  M  V  L  V  E   : V  L  L  T  L  F  S  S  K  S  L  C  L  K  V  R  R  *  D  S  P  G  I  I  P  H  V  F  T  L  L  T  S  V  R  L  L  R  P  A  Y  R  G  H  L  L   : G  R  Y  T  M  *  L  M  T  I  L  L  L  E  S  R  Y  L  S  L  L  G  T  W  L  R  R  N  G  Q  A  T  *  S  S  T  T  L  L  K  R  *  S  L  *  S  R  R  E  V  Q  G  E  R  S  E  S  P  I  N  A  L  K  R  N  W  E  *  I  C  F  T  L  P  M  N  L  D  C  G  A  L  L  N  A  *  K  F  H  L  A  *  V  D  C  S  I  I  R  P  G  M  E  G  F  Q  C  M  W  C  L  G  *  K  D  *  A  I  R  M  K  *  F  Y  R  R  D  V  A  Q  N  A  G  *  Y  D  N  L  L  S  F  L  F  F  F   </second_frame>
            <third_frame>   D  L  P  A  A  K  S  T  G  C  Y  S  S  P  A  G  S  N  C  R  N  I  F  Y  *  N  A  T  V  F  I  Q  Y  *  M  Q  C  R  *  R  I  Q  H  *  K  S  G  F  E  K  S  N  V  H  S  G  D  G  F  R  R  K  I  L  G  C  R  F  E  K  Q  W  M  :  G  S  Y  R  N  L  Y  Q  Y  C  T  E  E  E  I  R  G  N  G  V  A  C  A  H  I  *  R  Q  *  T  T  :  T  G  S  P  R  Y  L  E  I  P  F  T  S  S  Y  L  H  P  S  S  F  G  C  W  *  S   : D  A  S  A  *  R  I  A  K  R  K  T  K  G  W  *  P  P  V  A  W  L  L  V  I  N  R :   C  L  W  R  L  W  W  C  I  G  *  *  R  :  V  S  T  *  L  D  D  *  I  G  Q  S  K  D  S  C  R  G  R  M  V  T  S  G  L  *  W  K  G  L  C  P  N  I  *  I  G  W  H  I  W  S  W  *  K  :  C  C  *  H  Y  S  Q  A  R  A  S  V  *  R  S  E  D  E  I  L  Q  A  L  Y  L  T  Y  S  R  C  *  H  L  S  G  S  *  G  Q  H  T  E  A  I  S  W  :  A  D  I  Q  C  S  *  *  R  S  C  S  *  R  A  G  I  *  V  C  *  E  L  G  *  G  E  M  A  R  P  P  N  L  Q  Q  L  C  *  R  G  K  V  S  N  P  A  G  R  F  K  G  R  E  A  S  L  Q  *  T  H  *  N  G  T  G  S  E  S  A  L  P  Y  L  *  I  W  I  A  E  H  Y  *  T  H  R  S  S  I  W  R  K  L  I  A  L  S  S  D  R  E  W  K  V  S  N  V  C  G  V  *  D  E  K  I  E  L  L  G  *  S  N  F  I  D  V  M  *  L  R  M  L  A  D  M  T  T  C  Y  P  F  Y  F  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40877" stop="40657"/>
                    <exon start="40563" stop="40471"/>
                    <exon start="39665" stop="39587"/>
                    <exon start="39110" stop="39032"/>
                    <exon start="38876" stop="38837"/>
                    <exon start="38754" stop="38620"/>
                    <exon start="38478" stop="38341"/>
                    <exon start="38039" stop="37760"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EICRLPNQPAVIHLRQGQTAGIYSIKTPQFSSNIKCSVGEESSTKNPDLKNRMFILGMGFVGKFLAADLKSNGWEVTGTCTSTARKKKLEEMGLHAHIFDANEPQQEVLDILKFHSHLLISIPPVLGVGDPMLRHKELLKERLKDGNLQWLGYLSSTGVYGDSGGALVDEEFPPSSTTELAKARIAAEEGWLHLACDGRVSAQIFRLGGIYGPGRSAVDTILKQEPLSKGQKMRFSRHYTSRIHVADICQALKASIQRPSPGQIYNVVDDDPAPREQVFKFARNLVEEKWPGHLIFNNSAEEVKSLIPQGGSRGEKRVSNKRIKTELGVNLLYPTYESGLRSIIERIEVPFGVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41972" PGL_stop="44271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41972" e_stop="44271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41972" e_stop="44271" e_length="2300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41972" stop="44271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCCTATGTGGTTCATCAATTATTCTCTTCTCACATAATATTCCTACACGCATTTACGTTGACTTTTTCTTTTGAAACATTATTAATGCCGCGTTGGTATTTGATTATTGCCTAAAAAAATAGTAAAATTTGTGCTACGCTTATATAACAAAACAACAGTCTCTTGAACTAATGTTTCTTGATTCTAATGAACTGAAAATGAATTATTCTCATCTCATCTTTGTTTTTACCATCATTCTTGCTTATTCCTCTGTTTCAATTCTTGCACAACAGCCTTATTTTGGAACTGGAACAAATGACTGCAGCAGCCAAGATACCTCCACTTCTGCTTTTGGGTATTTATGCAATGGCGTTAACCGTACTTGCCAATCTTATTTGACCTTCAGATCTCAACCCCCTTTCAATACTGTGTCCTCAATCTCTTCTTTACTCGGTGCTAATCCTTCACAGCTCTCTCAGCTCAATTCTGTTTCTCAAAATGCTACCTTTAACACCAATCAAATGGTTCTTGTTCCTGTCACTTGTTCTTGTTCAGGTCAGTTTTATCAATCAAATGCATCTTATGTTATCAGAAGGGATGATAGTTTCTTGAATATTGCAATGAATACCTTACAAGGATTGTCAACTTGCCAAGCTATCAACGCGGAGAACAGTGAACAAGCTAACAATCTTGTTGTTGGTTCAAGAATTAATGTTCCTCTGCGATGTGCTTGTCCTACACAAAACCAAACTAATAATGGTACAAATTATCTGCTTACTTATTTGATTGCTTCTGGGGAATTTGTTTCCTTTATTAGTGATAAATTTGGGGTGGATTTTAGGGCAACTCTTGCTGCTAATAGTATACCAGAAGATGCTCCTACTGTCTTTCCAAATACTACTCTATTAGTTCCTTTATCGACCCCACCTTTGAGTTCCCAAGTTGCTGGACCATCTCCACCACCGCCTCCTGCGACAACACCAACACCACCTGCTGTCCCTGTATCGGAGAGCAGCTCGAACAAAACTTGGATATATGTTGTCGCTGGTGTTGTTGGAGGACTTGTTGCTTTGTGTATTCTGGGGGTGGTTGTTTTCTTTTTGTTTTTCAGGAAAAAGGAAAAGAAAGCTGATCCACAGTTTGTTTCTGAAAGCTTTGAAGCTGTTGAGAAACCGTCGAATAAGAAAGTTGAAGAAGAATCAGAGGAGTTTTTGGAAAGTTTATCCAGCATAGCTCAATCTGTTAAGGTTTACAAGTTTGAAGAGGTTAAAGCAGCCACAGAAAATTTCAGTCCTACATGTTTGATTAAGGGATCTGTTTATCGGGGCACGATAAATGGGGATTTTGCTGCTATAAAGAAAATGAGTGGTGATGTATCAAAGGAAATTAATTTGTTGAGCAAAATCAATCATTTTAATCTTATTAGTCTATCGGGAATTTGTTTTCATGATGGTCACTGGTATCTTGTATATGAATATGCTGCCAATGGACCATTAAGTGATTGGATATGTCACCATAATGGTGAGCAGAAGTCACTAAGTTGGGCACAAAGAGTACAAATTTCTTTTGATGTGGCTACAGGACTTAACTATCTCCATAGCTACACATCCCCACCTCATGTTCACAAGGATTTAAACGGTGATAATATACTTCTTGATGGTGATTTAAGAGCCAAGATTGCTAACTTTGGTCTAGCAAGGTCAGCAGATGGACAAGAAGGTGAGTTTGCATTGACAAGGCACATAGTTGGGACCCAAGGCTACATGGCACCTGAGTATTTGGAGAATGGGCTAGTCTCACCGAAGCTGGATGTCTATGCATTGGGAGTTCTGTTGCTGGAGATTCTCACCGGGAAAGAAGTTTCCGCTTTATATGAAGGTTCAAACACAAACTTGGCTGAGTTGTTGATCCCGGTGCTTAATGATGATAATGCAAAGGAGAGTTTGAGCAACTTCGTTGACCCTTCTCTGCAAGGGAAGTACCCTGTGGAACTTGCTTTTGCCATGGTCAGATTGATCGATAACTGCCTAATGAAAGATCCCTCACATCGCCCTAATACGGATGAGATTGTGCAATCTGTTTCAAGAATTATGACAGCCACACACTCATGGGAAACGTCATTTAGCACTTCAGTGTCACCACATAGATTGCCCTAGATCAATGATTGTTTTTCTTTGTTGTTTATTTTGTTTTTGTTTTTTCCTCCTTCCACATCTAGCATGATTTGTTATGTGCAATTGTTATTACCTTGTTTATGAATTTGGAAGAGCTATTGCACCATTTATCCTACATAAAAATCAGTTTAACATTTCAGTCAA</gDNA_template>
            <first_frame> *  S  Y  V  V  H  Q  L  F  S  S  H  I  I  F  L  H  A  F  T  L  T  F  S  F  E  T  L  L  M  P  R  W  Y  L  I  I  A  *  K  N  S  K  I  C  A  T  L  I  *  Q  N  N  S  L  L  N  *  C  F  L  I  L  M  N  *  K  *  I  I  L  I  S  S  L  F  L  P  S  F  L  L  I  P  L  F  Q  F  L  H  N  S  L  I  L  E  L  E  Q  M  T  A  A  A  K  I  P  P  L  L  L  L  G  I  Y  A  M  A  L  T  V  L  A  N  L  I  *  P  S  D  L  N  P  L  S  I  L  C  P  Q  S  L  L  Y  S  V  L  I  L  H  S  S  L  S  S  I  L  F  L  K  M  L  P  L  T  P  I  K  W  F  L  F  L  S  L  V  L  V  Q  V  S  F  I  N  Q  M  H  L  M  L  S  E  G  M  I  V  S  *  I  L  Q  *  I  P  Y  K  D  C  Q  L  A  K  L  S  T  R  R  T  V  N  K  L  T  I  L  L  L  V  Q  E  L  M  F  L  C  D  V  L  V  L  H  K  T  K  L  I  M  V  Q  I  I  C  L  L  I  *  L  L  L  G  N  L  F  P  L  L  V  I  N  L  G  W  I  L  G  Q  L  L  L  L  I  V  Y  Q  K  M  L  L  L  S  F  Q  I  L  L  Y  *  F  L  Y  R  P  H  L  *  V  P  K  L  L  D  H  L  H  H  R  L  L  R  Q  H  Q  H  H  L  L  S  L  Y  R  R  A  A  R  T  K  L  G  Y  M  L  S  L  V  L  L  E  D  L  L  L  C  V  F  W  G  W  L  F  S  F  C  F  S  G  K  R  K  R  K  L  I  H  S  L  F  L  K  A  L  K  L  L  R  N  R  R  I  R  K  L  K  K  N  Q  R  S  F  W  K  V  Y  P  A  *  L  N  L  L  R  F  T  S  L  K  R  L  K  Q  P  Q  K  I  S  V  L  H  V  *  L  R  D  L  F  I  G  A  R  *  M  G  I  L  L  L  *  R  K  *  V  V  M  Y  Q  R  K  L  I  C  *  A  K  S  I  I  L  I  L  L  V  Y  R  E  F  V  F  M  M  V  T  G  I  L  Y  M  N  M  L  P  M  D  H  *  V  I  G  Y  V  T  I  M  V  S  R  S  H  *  V  G  H  K  E  Y  K  F  L  L  M  W  L  Q  D  L  T  I  S  I  A  T  H  P  H  L  M  F  T  R  I  *  T  V  I  I  Y  F  L  M  V  I  *  E  P  R  L  L  T  L  V  *  Q  G  Q  Q  M  D  K  K  V  S  L  H  *  Q  G  T  *  L  G  P  K  A  T  W  H  L  S  I  W  R  M  G  *  S  H  R  S  W  M  S  M  H  W  E  F  C  C  W  R  F  S  P  G  K  K  F  P  L  Y  M  K  V  Q  T  Q  T  W  L  S  C  *  S  R  C  L  M  M  I  M  Q  R  R  V  *  A  T  S  L  T  L  L  C  K  G  S  T  L  W  N  L  L  L  P  W  S  D  *  S  I  T  A  *  *  K  I  P  H  I  A  L  I  R  M  R  L  C  N  L  F  Q  E  L  *  Q  P  H  T  H  G  K  R  H  L  A  L  Q  C  H  H  I  D  C  P  R  S  M  I  V  F  L  C  C  L  F  C  F  C  F  F  L  L  P  H  L  A  *  F  V  M  C  N  C  Y  Y  L  V  Y  E  F  G  R  A  I  A  P  F  I  L  H  K  N  Q  F  N  I  S  V   </first_frame>
            <second_frame>  N  P  M  W  F  I  N  Y  S  L  L  T  *  Y  S  Y  T  H  L  R  *  L  F  L  L  K  H  Y  *  C  R  V  G  I  *  L  L  P  K  K  I  V  K  F  V  L  R  L  Y  N  K  T  T  V  S  *  T  N  V  S  *  F  *  *  T  E  N  E  L  F  S  S  H  L  C  F  Y  H  H  S  C  L  F  L  C  F  N  S  C  T  T  A  L  F  W  N  W  N  K  *  L  Q  Q  P  R  Y  L  H  F  C  F  W  V  F  M  Q  W  R  *  P  Y  L  P  I  L  F  D  L  Q  I  S  T  P  F  Q  Y  C  V  L  N  L  F  F  T  R  C  *  S  F  T  A  L  S  A  Q  F  C  F  S  K  C  Y  L  *  H  Q  S  N  G  S  C  S  C  H  L  F  L  F  R  S  V  L  S  I  K  C  I  L  C  Y  Q  K  G  *  *  F  L  E  Y  C  N  E  Y  L  T  R  I  V  N  L  P  S  Y  Q  R  G  E  Q  *  T  S  *  Q  S  C  C  W  F  K  N  *  C  S  S  A  M  C  L  S  Y  T  K  P  N  *  *  W  Y  K  L  S  A  Y  L  F  D  C  F  W  G  I  C  F  L  Y  *  *  *  I  W  G  G  F  *  G  N  S  C  C  *  *  Y  T  R  R  C  S  Y  C  L  S  K  Y  Y  S  I  S  S  F  I  D  P  T  F  E  F  P  S  C  W  T  I  S  T  T  A  S  C  D  N  T  N  T  T  C  C  P  C  I  G  E  Q  L  E  Q  N  L  D  I  C  C  R  W  C  C  W  R  T  C  C  F  V  Y  S  G  G  G  C  F  L  F  V  F  Q  E  K  G  K  E  S  *  S  T  V  C  F  *  K  L  *  S  C  *  E  T  V  E  *  E  S  *  R  R  I  R  G  V  F  G  K  F  I  Q  H  S  S  I  C  *  G  L  Q  V  *  R  G  *  S  S  H  R  K  F  Q  S  Y  M  F  D  *  G  I  C  L  S  G  H  D  K  W  G  F  C  C  Y  K  E  N  E  W  *  C  I  K  G  N  *  F  V  E  Q  N  Q  S  F  *  S  Y  *  S  I  G  N  L  F  S  *  W  S  L  V  S  C  I  *  I  C  C  Q  W  T  I  K  *  L  D  M  S  P  *  W  *  A  E  V  T  K  L  G  T  K  S  T  N  F  F  *  C  G  Y  R  T  *  L  S  P  *  L  H  I  P  T  S  C  S  Q  G  F  K  R  *  *  Y  T  S  *  W  *  F  K  S  Q  D  C  *  L  W  S  S  K  V  S  R  W  T  R  R  *  V  C  I  D  K  A  H  S  W  D  P  R  L  H  G  T  *  V  F  G  E  W  A  S  L  T  E  A  G  C  L  C  I  G  S  S  V  A  G  D  S  H  R  E  R  S  F  R  F  I  *  R  F  K  H  K  L  G  *  V  V  D  P  G  A  *  *  *  *  C  K  G  E  F  E  Q  L  R  *  P  F  S  A  R  E  V  P  C  G  T  C  F  C  H  G  Q  I  D  R  *  L  P  N  E  R  S  L  T  S  P  *  Y  G  *  D  C  A  I  C  F  K  N  Y  D  S  H  T  L  M  G  N  V  I  *  H  F  S  V  T  T  *  I  A  L  D  Q  *  L  F  F  F  V  V  Y  F  V  F  V  F  S  S  F  H  I  *  H  D  L  L  C  A  I  V  I  T  L  F  M  N  L  E  E  L  L  H  H  L  S  Y  I  K  I  S  L  T  F  Q  S  </second_frame>
            <third_frame>   I  L  C  G  S  S  I  I  L  F  S  H  N  I  P  T  R  I  Y  V  D  F  F  F  *  N  I  I  N  A  A  L  V  F  D  Y  C  L  K  K  *  *  N  L  C  Y  A  Y  I  T  K  Q  Q  S  L  E  L  M  F  L  D  S  N  E  L  K  M  N  Y  S  H  L  I  F  V  F  T  I  I  L  A  Y  S  S  V  S  I  L  A  Q  Q  P  Y  F  G  T  G  T  N  D  C  S  S  Q  D  T  S  T  S  A  F  G  Y  L  C  N  G  V  N  R  T  C  Q  S  Y  L  T  F  R  S  Q  P  P  F  N  T  V  S  S  I  S  S  L  L  G  A  N  P  S  Q  L  S  Q  L  N  S  V  S  Q  N  A  T  F  N  T  N  Q  M  V  L  V  P  V  T  C  S  C  S  G  Q  F  Y  Q  S  N  A  S  Y  V  I  R  R  D  D  S  F  L  N  I  A  M  N  T  L  Q  G  L  S  T  C  Q  A  I  N  A  E  N  S  E  Q  A  N  N  L  V  V  G  S  R  I  N  V  P  L  R  C  A  C  P  T  Q  N  Q  T  N  N  G  T  N  Y  L  L  T  Y  L  I  A  S  G  E  F  V  S  F  I  S  D  K  F  G  V  D  F  R  A  T  L  A  A  N  S  I  P  E  D  A  P  T  V  F  P  N  T  T  L  L  V  P  L  S  T  P  P  L  S  S  Q  V  A  G  P  S  P  P  P  P  P  A  T  T  P  T  P  P  A  V  P  V  S  E  S  S  S  N  K  T  W  I  Y  V  V  A  G  V  V  G  G  L  V  A  L  C  I  L  G  V  V  V  F  F  L  F  F  R  K  K  E  K  K  A  D  P  Q  F  V  S  E  S  F  E  A  V  E  K  P  S  N  K  K  V  E  E  E  S  E  E  F  L  E  S  L  S  S  I  A  Q  S  V  K  V  Y  K  F  E  E  V  K  A  A  T  E  N  F  S  P  T  C  L  I  K  G  S  V  Y  R  G  T  I  N  G  D  F  A  A  I  K  K  M  S  G  D  V  S  K  E  I  N  L  L  S  K  I  N  H  F  N  L  I  S  L  S  G  I  C  F  H  D  G  H  W  Y  L  V  Y  E  Y  A  A  N  G  P  L  S  D  W  I  C  H  H  N  G  E  Q  K  S  L  S  W  A  Q  R  V  Q  I  S  F  D  V  A  T  G  L  N  Y  L  H  S  Y  T  S  P  P  H  V  H  K  D  L  N  G  D  N  I  L  L  D  G  D  L  R  A  K  I  A  N  F  G  L  A  R  S  A  D  G  Q  E  G  E  F  A  L  T  R  H  I  V  G  T  Q  G  Y  M  A  P  E  Y  L  E  N  G  L  V  S  P  K  L  D  V  Y  A  L  G  V  L  L  L  E  I  L  T  G  K  E  V  S  A  L  Y  E  G  S  N  T  N  L  A  E  L  L  I  P  V  L  N  D  D  N  A  K  E  S  L  S  N  F  V  D  P  S  L  Q  G  K  Y  P  V  E  L  A  F  A  M  V  R  L  I  D  N  C  L  M  K  D  P  S  H  R  P  N  T  D  E  I  V  Q  S  V  S  R  I  M  T  A  T  H  S  W  E  T  S  F  S  T  S  V  S  P  H  R  L  P  *  I  N  D  C  F  S  L  L  F  I  L  F  L  F  F  P  P  S  T  S  S  M  I  C  Y  V  Q  L  L  L  P  C  L  *  I  W  K  S  Y  C  T  I  Y  P  T  *  K  S  V  *  H  F  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42100" stop="44109"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2007</number_coding_nucleotides>
                  <number_encoded_amino_acids>669</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLCYAYITKQQSLELMFLDSNELKMNYSHLIFVFTIILAYSSVSILAQQPYFGTGTNDCSSQDTSTSAFGYLCNGVNRTCQSYLTFRSQPPFNTVSSISSLLGANPSQLSQLNSVSQNATFNTNQMVLVPVTCSCSGQFYQSNASYVIRRDDSFLNIAMNTLQGLSTCQAINAENSEQANNLVVGSRINVPLRCACPTQNQTNNGTNYLLTYLIASGEFVSFISDKFGVDFRATLAANSIPEDAPTVFPNTTLLVPLSTPPLSSQVAGPSPPPPPATTPTPPAVPVSESSSNKTWIYVVAGVVGGLVALCILGVVVFFLFFRKKEKKADPQFVSESFEAVEKPSNKKVEEESEEFLESLSSIAQSVKVYKFEEVKAATENFSPTCLIKGSVYRGTINGDFAAIKKMSGDVSKEINLLSKINHFNLISLSGICFHDGHWYLVYEYAANGPLSDWICHHNGEQKSLSWAQRVQISFDVATGLNYLHSYTSPPHVHKDLNGDNILLDGDLRAKIANFGLARSADGQEGEFALTRHIVGTQGYMAPEYLENGLVSPKLDVYALGVLLLEILTGKEVSALYEGSNTNLAELLIPVLNDDNAKESLSNFVDPSLQGKYPVELAFAMVRLIDNCLMKDPSHRPNTDEIVQSVSRIMTATHSWETSFSTSVSPHRLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49124" PGL_stop="49360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49124" e_stop="49360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="49124" e_stop="49360" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49124" stop="49360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  L  N  I </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  *  T   </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="57801" PGL_stop="58037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57801" e_stop="58037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="57801" e_stop="58037" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57801" stop="58037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTAAGACGTGAAGTTCATATGAAATGTTAGGTGGCTTGATTGAGGGAGTAATTCTTGGTTAGACGAATCTATAAAAAAAAAAATATAATGTGTAATTAAAACATTATGAATGAACCATGAAATTTCCCTAAGAATTAATGTTAAACTTGATGAAAAAGTGAAGAAAAATCGTAGAATAAATTTCCAGAACTTGAAAACAGACTTTAAAAGAATCTGGAAATTTTTTGAACATC</gDNA_template>
            <first_frame> W  G  K  T  *  S  S  Y  E  M  L  G  G  L  I  E  G  V  I  L  G  *  T  N  L  *  K  K  K  Y  N  V  *  L  K  H  Y  E  *  T  M  K  F  P  *  E  L  M  L  N  L  M  K  K  *  R  K  I  V  E  *  I  S  R  T  *  K  Q  T  L  K  E  S  G  N  F  L  N  I </first_frame>
            <second_frame>  G  V  R  R  E  V  H  M  K  C  *  V  A  *  L  R  E  *  F  L  V  R  R  I  Y  K  K  K  N  I  M  C  N  *  N  I  M  N  E  P  *  N  F  P  K  N  *  C  *  T  *  *  K  S  E  E  K  S  *  N  K  F  P  E  L  E  N  R  L  *  K  N  L  E  I  F  *  T   </second_frame>
            <third_frame>   G  *  D  V  K  F  I  *  N  V  R  W  L  D  *  G  S  N  S  W  L  D  E  S  I  K  K  K  I  *  C  V  I  K  T  L  *  M  N  H  E  I  S  L  R  I  N  V  K  L  D  E  K  V  K  K  N  R  R  I  N  F  Q  N  L  K  T  D  F  K  R  I  W  K  F  F  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="64837" PGL_stop="60354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61592" e_stop="61273"/>
            <exon e_start="61182" e_stop="60661"/>
            <exon e_start="60404" e_stop="60354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.854" acc_prob="0.971" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.689" e_score="0.975"/>
          <exon-only e_score="0.490"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="61592" e_stop="61273" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.854" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="61182" e_stop="60661" e_length="522"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.689">
            <gDNA_intron_boundary i_start="60660" i_stop="60405" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="0.490">
            <gDNA_exon_boundary e_start="60404" e_stop="60354" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61592" stop="61273"/>
              <exon start="61182" stop="60661"/>
              <exon start="60404" stop="60354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61559" stop="61273"/>
              <exon start="61182" stop="60866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAATATGTCTTGATTCATACAAATAATTCAGATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAGGTAATAAATGTCACACTTCTTTCATGCTTAATAGAATGGTCTAAAAATCATACCTCATAAGATATTCTTACTTCACTCTATCTGAAGACAAATTTACTCATGACTTTTTCAGGTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG : GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATCCTCATCATCATCTTCATCACCATCTACTTCATCAAAGAAAGGGAAGCGCTCCGACTTTGAGAAGAAACTGGGTGATTTTTTTAAGCACCAAATTGAATCAGATACATCAGCAGCTTATGGGGATGGATTCAGAGAAGGTAACAAGGCAGTGCTCAAGTATGGCCTTAAGACGACACTTGATCACATCCGGCTTACAGGAACCTACCCGTGTTAAAATTTTCAGTCATTCCGAGTGTTTCCACTTCCACGCGGATGTTGTAACAAACCTTCTATACTAGTTTTGTAGGACCACATAGCACATACAATTATAATCATTACACAATAATTAAAAGATAAAGAGTAAATGCAGCAATAAGATCTGCGTTTAATACCCTTGTGTCTGCTTCAACTTGTATACT : CACCAATACAAAGTCTGAACCAAAACAGGAAAGAAACGCTAGTGGAACATG</gDNA_template>
            <first_frame> *  N  M  S  *  F  I  Q  I  I  Q  I  S  R  R  P  R  I  G  G  Y  R  I  L  D  M  F  T  E  P  Y  R  L  I  R  H  C  E  V  T  A  I  L  I  L  Y  G  L  P  R  *  *  M  S  H  F  F  H  A  *  *  N  G  L  K  I  I  P  H  K  I  F  L  L  H  S  I  *  R  Q  I  Y  S  *  L  F  Q  V  I  D  W  F  N  S  G  S  *  N  D  A  C  M  V  A  A  *  R :   L  S  E  F  K  S  R  S  G  R  R  Y  L  P  S  F  S  S  H  V  V  G  L  G  N  Y  S  W  F  W  Q  Y  F  N  F  C  I  Y  L  C  I  L  I  I  I  F  I  T  I  Y  F  I  K  E  R  E  A  L  R  L  *  E  E  T  G  *  F  F  *  A  P  N  *  I  R  Y  I  S  S  L  W  G  W  I  Q  R  R  *  Q  G  S  A  Q  V  W  P  *  D  D  T  *  S  H  P  A  Y  R  N  L  P  V  L  K  F  S  V  I  P  S  V  S  T  S  T  R  M  L  *  Q  T  F  Y  T  S  F  V  G  P  H  S  T  Y  N  Y  N  H  Y  T  I  I  K  R  *  R  V  N  A  A  I  R  S  A  F  N  T  L  V  S  A  S  T  C  I  L :   T  N  T  K  S  E  P  K  Q  E  R  N  A  S  G  T   </first_frame>
            <second_frame>  E  I  C  L  D  S  Y  K  *  F  R  F  Q  G  D  H  G  L  V  V  I  G  F  *  I  C  L  Q  S  L  T  G  *  F  D  T  V  K  *  Q  L  F  *  F  C  M  V  F  L  G  N  K  C  H  T  S  F  M  L  N  R  M  V  *  K  S  Y  L  I  R  Y  S  Y  F  T  L  S  E  D  K  F  T  H  D  F  F  R  L  L  T  G  S  I  L  A  H  E  M  M  H  A  W  L  R  L  K   : G  Y  P  S  L  S  P  E  V  E  E  G  I  C  Q  V  L  A  H  M  W  L  D  S  E  I  I  A  G  S  G  S  T  S  T  S  A  S  T  S  A  S  S  S  S  S  S  S  P  S  T  S  S  K  K  G  K  R  S  D  F  E  K  K  L  G  D  F  F  K  H  Q  I  E  S  D  T  S  A  A  Y  G  D  G  F  R  E  G  N  K  A  V  L  K  Y  G  L  K  T  T  L  D  H  I  R  L  T  G  T  Y  P  C  *  N  F  Q  S  F  R  V  F  P  L  P  R  G  C  C  N  K  P  S  I  L  V  L  *  D  H  I  A  H  T  I  I  I  I  T  Q  *  L  K  D  K  E  *  M  Q  Q  *  D  L  R  L  I  P  L  C  L  L  Q  L  V  Y   : S  P  I  Q  S  L  N  Q  N  R  K  E  T  L  V  E  H  </second_frame>
            <third_frame>   K  Y  V  L  I  H  T  N  N  S  D  F  K  E  T  T  D  W  W  L  S  D  F  R  Y  V  Y  R  A  L  Q  V  N  S  T  L  *  S  D  S  Y  S  N  F  V  W  S  S  *  V  I  N  V  T  L  L  S  C  L  I  E  W  S  K  N  H  T  S  *  D  I  L  T  S  L  Y  L  K  T  N  L  L  M  T  F  S  G  Y  *  L  V  Q  F  W  L  M  K  *  C  M  H  G  C  G  L  K  :  V  I  R  V  *  V  Q  K  W  K  K  V  S  A  K  F  *  L  T  C  G  W  T  R  K  L  *  L  V  L  A  V  L  Q  L  L  H  L  P  L  H  P  H  H  H  L  H  H  H  L  L  H  Q  R  K  G  S  A  P  T  L  R  R  N  W  V  I  F  L  S  T  K  L  N  Q  I  H  Q  Q  L  M  G  M  D  S  E  K  V  T  R  Q  C  S  S  M  A  L  R  R  H  L  I  T  S  G  L  Q  E  P  T  R  V  K  I  F  S  H  S  E  C  F  H  F  H  A  D  V  V  T  N  L  L  Y  *  F  C  R  T  T  *  H  I  Q  L  *  S  L  H  N  N  *  K  I  K  S  K  C  S  N  K  I  C  V  *  Y  P  C  V  C  F  N  L  Y  T  :  H  Q  Y  K  V  *  T  K  T  G  K  K  R  *  W  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61399" stop="61273"/>
                    <exon start="61182" stop="60845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYLIRYSYFTLSEDKFTHDFFRLLTGSILAHEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSASSSSSSSPSTSSKKGKRSDFEKKLGDFFKHQIESDTSAAYGDGFREGNKAVLKYGLKTTLDHIRLTGTYPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64837" e_stop="64532"/>
            <exon e_start="64074" e_stop="63786"/>
            <exon e_start="63605" e_stop="63515"/>
            <exon e_start="63033" e_stop="62883"/>
            <exon e_start="62755" e_stop="62635"/>
            <exon e_start="62527" e_stop="62444"/>
            <exon e_start="62317" e_stop="62198"/>
            <exon e_start="62028" e_stop="61816"/>
            <exon e_start="61710" e_stop="61648"/>
            <exon e_start="61559" e_stop="61444"/>
            <exon e_start="61331" e_stop="61273"/>
            <exon e_start="61182" e_stop="61059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.947" e_score="0.974"/>
          <exon-intron don_prob="0.982" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.775" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.772" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="64837" e_stop="64532" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.947">
            <gDNA_intron_boundary i_start="64531" i_stop="64075" i_length="457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64074" e_stop="63786" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.950">
            <gDNA_intron_boundary i_start="63785" i_stop="63606" i_length="180"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63605" e_stop="63515" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="63514" i_stop="63034" i_length="481"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63033" e_stop="62883" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62882" i_stop="62756" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62755" e_stop="62635" e_length="121"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.972">
            <gDNA_intron_boundary i_start="62634" i_stop="62528" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62527" e_stop="62444" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.775" acc_prob="0.905">
            <gDNA_intron_boundary i_start="62443" i_stop="62318" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="62317" e_stop="62198" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62197" i_stop="62029" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62028" e_stop="61816" e_length="213"/>
          </exon>
          <intron i_serial="8" don_prob="0.772" acc_prob="0.864">
            <gDNA_intron_boundary i_start="61815" i_stop="61711" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="61710" e_stop="61648" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.823">
            <gDNA_intron_boundary i_start="61647" i_stop="61560" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="61559" e_stop="61444" e_length="116"/>
          </exon>
          <intron i_serial="10" don_prob="0.941" acc_prob="0.995">
            <gDNA_intron_boundary i_start="61443" i_stop="61332" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="61331" e_stop="61273" e_length="59"/>
          </exon>
          <intron i_serial="11" don_prob="0.854" acc_prob="0.971">
            <gDNA_intron_boundary i_start="61272" i_stop="61183" i_length="90"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="61182" e_stop="61059" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64837" stop="64532"/>
              <exon start="64074" stop="63786"/>
              <exon start="63605" stop="63515"/>
              <exon start="63033" stop="62883"/>
              <exon start="62755" stop="62635"/>
              <exon start="62527" stop="62444"/>
              <exon start="62317" stop="62198"/>
              <exon start="62028" stop="61816"/>
              <exon start="61710" stop="61648"/>
              <exon start="61559" stop="61444"/>
              <exon start="61331" stop="61273"/>
              <exon start="61182" stop="61059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTCGCCGATCTAATTACTCTTCTTTGACAAAGTTGTTTTTTTTTTTAAAAAAAATTGGGCTTATATTTTCGGTGGAATTCAATTCCTTTCATTTGGTTTCTCCTTTTTCTGGCTTACTTTTTTAAAATCTTATTCACACTTCCACTGGAATGTTCCTCTGAACCTCTGTTTTGTAATTTTGACAAGTTTTTATTCTTGTTTAGAATGGTGGGGATATGGGTATCTTTAGTGTCATCTCCGGTTCTTGGTACATGACCTACCTTCAAACTGAAATTTGATGCTTTGTACTGATTCATTTGGAA : GTGTTTATTGCTTACCAGTTTTGGATTCATATAGCCAACTTCAACTTGTTTGGGATTGAGGCGTAGTTGTTGTACACCAGGGACAGGAAATTGTGTTATGGGTTGGTTAGAAAAGATATTTGGAGGTTCCACACACAGGATCTCCGGTGGACAATACCATAGTGGGTATGAGGGTGCGCAATATCATGGGGGCTACGATGGAGGGCAATATCATTCGGGGCATGAAGGAGAACAATATCATGGAGGGTATCAGGACAGTACTACTTGGGACGGACCAACTACATCAGTG : GATGAATCGTCAGATTTTGATAAAGAAGAAATTGATCGTGCCATTGCACTTTCTCTAGCAGAAGAGGATCAGAAGGGGAAAAAAGTAATTG : AGAGTGAACCCCATTTGGAGGAAGACGAGGCTCTCGCCAAGGCCCTTCAGGAAAGTTTGAATGTGGAGTCGTCTCCACCACCACCACCACCTCGATATGATTATGGAAGTCCCTTTCCCTCACTCTCATACTCGTTTCCGTATGGGTATAG : GGTCTGTGCCGGTTGCAATGCTGAAATTGGACATGGAAGATATTTAAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTCCGTTGCCATGGTTGCAATCAACCAATTTCCGACTATGAG : TTTTCAATGTCAGATAACCGTCCATACCATAAATCATGCTACAAGGAACAGCATCACCCAAAATGTGATGTATGCAAGAGCTTT : ATTCCAACAAATCCGGCTGGTCTAATTGAATATAGGGCTCATCCTTTCTGGCTTCAGAAGTATTGCCCATCACATGAAACTGATGGGACGCCTCGTTGTTGCAGTTGTGAGAGAATGGAG : CCCGTAGATGCCAGATATCTGATACTTGAAGATGGTAGGAAGCTGTGTCTAGAGTGCTTGGACTCTTCAATAATGGACACTCATGAATGTCAACCCCTTTATCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTAGAGCAGCAAATTCCTTTGCTTCTAGTTGAAAGACAAGCATTAAATGAAGCAATGGAAGGAGAAAAGAAC : GGTCATCATCACATGCCTGAGACTCGAGGACTCTGCCTGTCCGAGGAACAGACCATTAGCAGT : ATTTCAAGGAGACCACGGATTGGTGGTTATCGGATTTTAGATATGTTTACAGAGCCTTACAGGTTAATTCGACACTGTGAAGTGACAGCTATTCTAATTTTGTATGGTCTTCCTAG : GTTATTGACTGGTTCAATTCTGGCTCATGAAATGATGCATGCATGGTTGCGGCTTAAAG : GTTATCCGAGTTTAAGTCCAGAAGTGGAAGAAGGTATCTGCCAAGTTTTAGCTCACATGTGGTTGGACTCGGAAATTATAGCTGGTTCTGGCAGTACTTCAACTTCTGCATCTACCTCTGCATC</gDNA_template>
            <first_frame> N  F  R  R  S  N  Y  S  S  L  T  K  L  F  F  F  L  K  K  I  G  L  I  F  S  V  E  F  N  S  F  H  L  V  S  P  F  S  G  L  L  F  *  N  L  I  H  T  S  T  G  M  F  L  *  T  S  V  L  *  F  *  Q  V  F  I  L  V  *  N  G  G  D  M  G  I  F  S  V  I  S  G  S  W  Y  M  T  Y  L  Q  T  E  I  *  C  F  V  L  I  H  L  E  :  V  F  I  A  Y  Q  F  W  I  H  I  A  N  F  N  L  F  G  I  E  A  *  L  L  Y  T  R  D  R  K  L  C  Y  G  L  V  R  K  D  I  W  R  F  H  T  Q  D  L  R  W  T  I  P  *  W  V  *  G  C  A  I  S  W  G  L  R  W  R  A  I  S  F  G  A  *  R  R  T  I  S  W  R  V  S  G  Q  Y  Y  L  G  R  T  N  Y  I  S   : G  *  I  V  R  F  *  *  R  R  N  *  S  C  H  C  T  F  S  S  R  R  G  S  E  G  E  K  S  N  * :   E  *  T  P  F  G  G  R  R  G  S  R  Q  G  P  S  G  K  F  E  C  G  V  V  S  T  T  T  T  T  S  I  *  L  W  K  S  L  S  L  T  L  I  L  V  S  V  W  V  *  :  G  L  C  R  L  Q  C  *  N  W  T  W  K  I  F  K  L  H  G  S  C  L  A  S  R  M  F  P  L  P  W  L  Q  S  T  N  F  R  L  *   : V  F  N  V  R  *  P  S  I  P  *  I  M  L  Q  G  T  A  S  P  K  M  *  C  M  Q  E  L   : Y  S  N  K  S  G  W  S  N  *  I  *  G  S  S  F  L  A  S  E  V  L  P  I  T  *  N  *  W  D  A  S  L  L  Q  L  *  E  N  G   : A  R  R  C  Q  I  S  D  T  *  R  W  *  E  A  V  S  R  V  L  G  L  F  N  N  G  H  S  *  M  S  T  P  L  S  *  D  T  R  I  L  *  R  F  K  Y  E  S  R  A  A  N  S  F  A  S  S  *  K  T  S  I  K  *  S  N  G  R  R  K  E   : R  S  S  S  H  A  *  D  S  R  T  L  P  V  R  G  T  D  H  *  Q   : Y  F  K  E  T  T  D  W  W  L  S  D  F  R  Y  V  Y  R  A  L  Q  V  N  S  T  L  *  S  D  S  Y  S  N  F  V  W  S  S  *  :  V  I  D  W  F  N  S  G  S  *  N  D  A  C  M  V  A  A  *  R :   L  S  E  F  K  S  R  S  G  R  R  Y  L  P  S  F  S  S  H  V  V  G  L  G  N  Y  S  W  F  W  Q  Y  F  N  F  C  I  Y  L  C  I </first_frame>
            <second_frame>  I  F  A  D  L  I  T  L  L  *  Q  S  C  F  F  F  *  K  K  L  G  L  Y  F  R  W  N  S  I  P  F  I  W  F  L  L  F  L  A  Y  F  F  K  I  L  F  T  L  P  L  E  C  S  S  E  P  L  F  C  N  F  D  K  F  L  F  L  F  R  M  V  G  I  W  V  S  L  V  S  S  P  V  L  G  T  *  P  T  F  K  L  K  F  D  A  L  Y  *  F  I  W  K :   C  L  L  L  T  S  F  G  F  I  *  P  T  S  T  C  L  G  L  R  R  S  C  C  T  P  G  T  G  N  C  V  M  G  W  L  E  K  I  F  G  G  S  T  H  R  I  S  G  G  Q  Y  H  S  G  Y  E  G  A  Q  Y  H  G  G  Y  D  G  G  Q  Y  H  S  G  H  E  G  E  Q  Y  H  G  G  Y  Q  D  S  T  T  W  D  G  P  T  T  S  V  :  D  E  S  S  D  F  D  K  E  E  I  D  R  A  I  A  L  S  L  A  E  E  D  Q  K  G  K  K  V  I   : E  S  E  P  H  L  E  E  D  E  A  L  A  K  A  L  Q  E  S  L  N  V  E  S  S  P  P  P  P  P  P  R  Y  D  Y  G  S  P  F  P  S  L  S  Y  S  F  P  Y  G  Y  R :   V  C  A  G  C  N  A  E  I  G  H  G  R  Y  L  S  C  M  G  A  V  W  H  P  E  C  F  R  C  H  G  C  N  Q  P  I  S  D  Y  E  :  F  S  M  S  D  N  R  P  Y  H  K  S  C  Y  K  E  Q  H  H  P  K  C  D  V  C  K  S  F  :  I  P  T  N  P  A  G  L  I  E  Y  R  A  H  P  F  W  L  Q  K  Y  C  P  S  H  E  T  D  G  T  P  R  C  C  S  C  E  R  M  E  :  P  V  D  A  R  Y  L  I  L  E  D  G  R  K  L  C  L  E  C  L  D  S  S  I  M  D  T  H  E  C  Q  P  L  Y  L  E  I  Q  E  F  Y  E  G  L  N  M  K  V  E  Q  Q  I  P  L  L  L  V  E  R  Q  A  L  N  E  A  M  E  G  E  K  N  :  G  H  H  H  M  P  E  T  R  G  L  C  L  S  E  E  Q  T  I  S  S  :  I  S  R  R  P  R  I  G  G  Y  R  I  L  D  M  F  T  E  P  Y  R  L  I  R  H  C  E  V  T  A  I  L  I  L  Y  G  L  P  R :   L  L  T  G  S  I  L  A  H  E  M  M  H  A  W  L  R  L  K   : G  Y  P  S  L  S  P  E  V  E  E  G  I  C  Q  V  L  A  H  M  W  L  D  S  E  I  I  A  G  S  G  S  T  S  T  S  A  S  T  S  A   </second_frame>
            <third_frame>   F  S  P  I  *  L  L  F  F  D  K  V  V  F  F  F  K  K  N  W  A  Y  I  F  G  G  I  Q  F  L  S  F  G  F  S  F  F  W  L  T  F  L  K  S  Y  S  H  F  H  W  N  V  P  L  N  L  C  F  V  I  L  T  S  F  Y  S  C  L  E  W  W  G  Y  G  Y  L  *  C  H  L  R  F  L  V  H  D  L  P  S  N  *  N  L  M  L  C  T  D  S  F  G   : S  V  Y  C  L  P  V  L  D  S  Y  S  Q  L  Q  L  V  W  D  *  G  V  V  V  V  H  Q  G  Q  E  I  V  L  W  V  G  *  K  R  Y  L  E  V  P  H  T  G  S  P  V  D  N  T  I  V  G  M  R  V  R  N  I  M  G  A  T  M  E  G  N  I  I  R  G  M  K  E  N  N  I  M  E  G  I  R  T  V  L  L  G  T  D  Q  L  H  Q  W :   M  N  R  Q  I  L  I  K  K  K  L  I  V  P  L  H  F  L  *  Q  K  R  I  R  R  G  K  K  *  L  :  R  V  N  P  I  W  R  K  T  R  L  S  P  R  P  F  R  K  V  *  M  W  S  R  L  H  H  H  H  H  L  D  M  I  M  E  V  P  F  P  H  S  H  T  R  F  R  M  G  I   : G  S  V  P  V  A  M  L  K  L  D  M  E  D  I  *  V  A  W  E  L  F  G  I  Q  N  V  S  V  A  M  V  A  I  N  Q  F  P  T  M  S :   F  Q  C  Q  I  T  V  H  T  I  N  H  A  T  R  N  S  I  T  Q  N  V  M  Y  A  R  A  L :   F  Q  Q  I  R  L  V  *  L  N  I  G  L  I  L  S  G  F  R  S  I  A  H  H  M  K  L  M  G  R  L  V  V  A  V  V  R  E  W  S :   P  *  M  P  D  I  *  Y  L  K  M  V  G  S  C  V  *  S  A  W  T  L  Q  *  W  T  L  M  N  V  N  P  F  I  L  R  Y  K  N  F  M  K  V  *  I  *  K  *  S  S  K  F  L  C  F  *  L  K  D  K  H  *  M  K  Q  W  K  E  K  R  T :   V  I  I  T  C  L  R  L  E  D  S  A  C  P  R  N  R  P  L  A  V :   F  Q  G  D  H  G  L  V  V  I  G  F  *  I  C  L  Q  S  L  T  G  *  F  D  T  V  K  *  Q  L  F  *  F  C  M  V  F  L   : G  Y  *  L  V  Q  F  W  L  M  K  *  C  M  H  G  C  G  L  K  :  V  I  R  V  *  V  Q  K  W  K  K  V  S  A  K  F  *  L  T  C  G  W  T  R  K  L  *  L  V  L  A  V  L  Q  L  L  H  L  P  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64040" stop="63786"/>
                    <exon start="63605" stop="63515"/>
                    <exon start="63033" stop="62883"/>
                    <exon start="62755" stop="62635"/>
                    <exon start="62527" stop="62444"/>
                    <exon start="62317" stop="62198"/>
                    <exon start="62028" stop="61816"/>
                    <exon start="61710" stop="61648"/>
                    <exon start="61559" stop="61444"/>
                    <exon start="61331" stop="61273"/>
                    <exon start="61182" stop="61061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTSTCLGLRRSCCTPGTGNCVMGWLEKIFGGSTHRISGGQYHSGYEGAQYHGGYDGGQYHSGHEGEQYHGGYQDSTTWDGPTTSVDESSDFDKEEIDRAIALSLAEEDQKGKKVIESEPHLEEDEALAKALQESLNVESSPPPPPPRYDYGSPFPSLSYSFPYGYRVCAGCNAEIGHGRYLSCMGAVWHPECFRCHGCNQPISDYEFSMSDNRPYHKSCYKEQHHPKCDVCKSFIPTNPAGLIEYRAHPFWLQKYCPSHETDGTPRCCSCERMEPVDARYLILEDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHMPETRGLCLSEEQTISSISRRPRIGGYRILDMFTEPYRLIRHCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64820" stop="64605"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFFDKVVFFFKKNWAYIFGGIQFLSFGFSFFWLTFLKSYSHFHWNVPLNLCFVILTSFYSCLEWWGYGYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="82958" PGL_stop="88382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82958" e_stop="83285"/>
            <exon e_start="83519" e_stop="84742"/>
            <exon e_start="85171" e_stop="85553"/>
            <exon e_start="86881" e_stop="86941"/>
            <exon e_start="87987" e_stop="88382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.879" e_score="0.997"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="82958" e_stop="83285" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="83286" i_stop="83518" i_length="233"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="83519" e_stop="84742" e_length="1224"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.879">
            <gDNA_intron_boundary i_start="84743" i_stop="85170" i_length="428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85171" e_stop="85553" e_length="383"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="85554" i_stop="86880" i_length="1327"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86881" e_stop="86941" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="86942" i_stop="87986" i_length="1045"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87987" e_stop="88382" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82958" stop="83285"/>
              <exon start="83519" stop="84742"/>
              <exon start="85171" stop="85553"/>
              <exon start="86881" stop="86941"/>
              <exon start="87987" stop="88382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAAAATTAGTTGAGTGAAAAAAGAGAACAGCGACCTCTTCTCTATTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCTGCAAAAAAACTCTTATGAG : TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCCTCCTGGAAACGCCGCAACCAACGCAGCGGAATTATTAGAAACTCAATTCAATCCGAATTTTAGACAGCCGAATCCACGGATTCATGCTGCTGCTGCCATGGGGAACGAGTGGTTCGGCAACCACCGACAAGGTATGGTAGTGGGTGGAGGTGCAAGTAGTCAACCATTGGGATATGCAAAAAATCATACGGACTCCATGCAACTTTTTCTAATGAATCCACAACCAAGGTCACCTTCTCCATCTCCTCCTAATTCAACTTCTTCTACGCTTCATATGTTGTTACCAAACCCATCATCTACTCCAACACTTCAAGGGTTTCCTAATCCGGCCGAAGGATCTTTCGGTCAGTTCATGACATGGGGGAATGGAGGAGCAAGTGCTGCTACAGCCACCCATCATCTCAATGCCCAGAATGAAATCGGAGGGGTAAACGTCGTAGAAAGTCAAGGCCTATCTCTATCCTTGTCTTCTTCGTTACAGCACAAGGCGGAGGAATTACAAATGAGCGGAGAAGCTGGAGGAATGTTGTTCTTCAATCAAGGAGGGTCTAGTACTTCCGGTCAATATCGATACAAGAATATGAATATGGGTGGATCAGGAATAAGCCCAAACATTCATCAAGTCCATGTTGGGTATGGGTCATCCTTAGGAGTGGTCAATGTGTTGAGGAATTCCAAATACGCAAAAGCTGCCCAAGAACTACTGGAAGAATTCTGCAGTGTTGGAAGAGGTAAATTGAAGAAGAATAACAACAAAGCAGCAGCCAATAACCCTAGTGGTGGCGCTAACAATGAAGCTTCTTCAAAAGATGTTCCTACTTTGTCCGCTGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAACTTTTATCTATGCTTGATGAG : GTAGATAGGAGGTACAATCATTACTGTGAACAAATGCAGATGGTTGTGAATTCGTTTGATTTAGTGATGGGTTTCGGGGCAGCAGTTCCTTATACAGCACTAGCACAGAAGGCAATGTCGAGACATTTCAGGTGTTTAAAGGATGCAATAGGAGCACAGTTGAAGCAGAGTTGTGAGTTATTAGGAGAGAAAGATGCAGGAACTTCGGGATTGACTAAAGGAGAAACTCCGAGGCTTAAGATGCTTGAACAAAGTTTGAGGCAACAAAGGGCGTTTCACCAAATGGGAATGATGGAACAAGAGGCTTGGAGACCACAAAGAGGCTTACCGGAACGTTCTGTCAATATTTTAAGAGCTTGGCTTTTTGAGCATTTTCTACACCC : GTACCCAAGTGATGCTGATAAACATCTGTTGGCAAGACAGACTGGTCTCTCCAGAAATCAG : GTATCAAATTGGTTCATTAATGCGAGGGTTCGGTTGTGGAAACCCATGGTAGAAGATATGTATCAACAAGAAGCCAAAGATGAAGATGAGAATAGCCAAAGCCAAAACAGTGGCAATAATATAATTGCACAAACACCAACGCCTAATAGCCTGACTAACTCTTCATCTACTAATATAACAACGGCAACAGCAGCAGCAACAACAACAACAGCCCCTACAACTACGACAGCACTAGCTGCTGCAGAGACAGGAACAGCTGCCACTCCCATAACTGTTACCTCAAGCAAAAGATCCCAAATCAATGCCACTGATAGTGACCCTTCACTTGTAGCAATCAATTCCTTCTCGGAAAACCAAGCTACTTTTACGACCAACATTCATGATCCCGACGCTTGC</gDNA_template>
            <first_frame> I  K  I  S  *  V  K  K  E  N  S  D  L  F  S  I  F  F  P  *  L  C  V  S  L  S  H  T  Q  R  E  T  K  K  T  R  I  H  M  S  K  F  I  F  L  F  *  E  K  I  C  L  A  E  L  Y  F  Q  K  A  I  A  A  *  S  R  G  R  E  I  K  K  K  R  Q  Q  T  A  E  K  *  R  E  T  L  T  T  A  L  P  F  K  S  H  E  E  K  T  I  A  E  K  P  A  K  K  L  L  *   : V  E  E  K  R  *  *  R  R  R  Q  R  C  H  G  N  S  N  T  T  N  Y  T  S  S  L  S  Q  I  S  S  N  S  T  S  C  R  K  S  Q  F  Y  V  P  R  L  S  S  P  Q  S  L  Q  F  P  *  W  V  R  E  I  T  S  R  T  A  A  A  P  A  P  A  S  S  T  D  P  S  R  *  I  A  S  A  R  I  R  T  V  *  R  *  N  K  W  P  T  N  S  L  *  D  C  W  N  V  I  *  D  V  *  F  P  S  W  K  R  R  N  Q  R  S  G  I  I  R  N  S  I  Q  S  E  F  *  T  A  E  S  T  D  S  C  C  C  C  H  G  E  R  V  V  R  Q  P  P  T  R  Y  G  S  G  W  R  C  K  *  S  T  I  G  I  C  K  K  S  Y  G  L  H  A  T  F  S  N  E  S  T  T  K  V  T  F  S  I  S  S  *  F  N  F  F  Y  A  S  Y  V  V  T  K  P  I  I  Y  S  N  T  S  R  V  S  *  S  G  R  R  I  F  R  S  V  H  D  M  G  E  W  R  S  K  C  C  Y  S  H  P  S  S  Q  C  P  E  *  N  R  R  G  K  R  R  R  K  S  R  P  I  S  I  L  V  F  F  V  T  A  Q  G  G  G  I  T  N  E  R  R  S  W  R  N  V  V  L  Q  S  R  R  V  *  Y  F  R  S  I  S  I  Q  E  Y  E  Y  G  W  I  R  N  K  P  K  H  S  S  S  P  C  W  V  W  V  I  L  R  S  G  Q  C  V  E  E  F  Q  I  R  K  S  C  P  R  T  T  G  R  I  L  Q  C  W  K  R  *  I  E  E  E  *  Q  Q  S  S  S  Q  *  P  *  W  W  R  *  Q  *  S  F  F  K  R  C  S  Y  F  V  R  C  *  *  N  *  T  S  E  K  E  G  Q  T  F  I  Y  A  *  *   : G  R  *  E  V  Q  S  L  L  *  T  N  A  D  G  C  E  F  V  *  F  S  D  G  F  R  G  S  S  S  L  Y  S  T  S  T  E  G  N  V  E  T  F  Q  V  F  K  G  C  N  R  S  T  V  E  A  E  L  *  V  I  R  R  E  R  C  R  N  F  G  I  D  *  R  R  N  S  E  A  *  D  A  *  T  K  F  E  A  T  K  G  V  S  P  N  G  N  D  G  T  R  G  L  E  T  T  K  R  L  T  G  T  F  C  Q  Y  F  K  S  L  A  F  *  A  F  S  T  P  :  V  P  K  *  C  *  *  T  S  V  G  K  T  D  W  S  L  Q  K  S   : G  I  K  L  V  H  *  C  E  G  S  V  V  E  T  H  G  R  R  Y  V  S  T  R  S  Q  R  *  R  *  E  *  P  K  P  K  Q  W  Q  *  Y  N  C  T  N  T  N  A  *  *  P  D  *  L  F  I  Y  *  Y  N  N  G  N  S  S  S  N  N  N  N  S  P  Y  N  Y  D  S  T  S  C  C  R  D  R  N  S  C  H  S  H  N  C  Y  L  K  Q  K  I  P  N  Q  C  H  *  *  *  P  F  T  C  S  N  Q  F  L  L  G  K  P  S  Y  F  Y  D  Q  H  S  *  S  R  R  L  </first_frame>
            <second_frame>  *  K  L  V  E  *  K  K  R  T  A  T  S  S  L  F  S  S  L  N  Y  V  S  L  S  H  T  H  R  E  R  Q  R  K  P  E  Y  I  C  Q  S  S  S  S  Y  F  K  K  K  Y  V  *  L  N  Y  I  S  R  R  R  L  Q  H  R  V  E  D  E  K  *  K  R  N  D  S  R  Q  Q  R  N  R  E  R  H  S  Q  Q  L  C  L  S  N  P  T  K  R  K  R  *  L  R  N  L  Q  K  N  S  Y  E  :  *  K  K  R  D  D  E  E  E  D  N  A  A  M  G  I  A  T  Q  P  I  T  L  R  P  C  H  K  Y  P  V  I  Q  Q  V  V  E  N  L  N  S  M  S  Q  D  Y  H  H  H  S  L  F  S  F  P  N  G  F  E  R  S  Q  A  E  Q  Q  Q  H  Q  H  Q  Q  A  Q  Q  I  R  R  D  K  L  R  V  Q  G  F  E  P  F  E  D  E  T  S  G  L  P  T  V  Y  E  T  A  G  M  L  S  E  M  F  N  F  P  P  G  N  A  A  T  N  A  A  E  L  L  E  T  Q  F  N  P  N  F  R  Q  P  N  P  R  I  H  A  A  A  A  M  G  N  E  W  F  G  N  H  R  Q  G  M  V  V  G  G  G  A  S  S  Q  P  L  G  Y  A  K  N  H  T  D  S  M  Q  L  F  L  M  N  P  Q  P  R  S  P  S  P  S  P  P  N  S  T  S  S  T  L  H  M  L  L  P  N  P  S  S  T  P  T  L  Q  G  F  P  N  P  A  E  G  S  F  G  Q  F  M  T  W  G  N  G  G  A  S  A  A  T  A  T  H  H  L  N  A  Q  N  E  I  G  G  V  N  V  V  E  S  Q  G  L  S  L  S  L  S  S  S  L  Q  H  K  A  E  E  L  Q  M  S  G  E  A  G  G  M  L  F  F  N  Q  G  G  S  S  T  S  G  Q  Y  R  Y  K  N  M  N  M  G  G  S  G  I  S  P  N  I  H  Q  V  H  V  G  Y  G  S  S  L  G  V  V  N  V  L  R  N  S  K  Y  A  K  A  A  Q  E  L  L  E  E  F  C  S  V  G  R  G  K  L  K  K  N  N  N  K  A  A  A  N  N  P  S  G  G  A  N  N  E  A  S  S  K  D  V  P  T  L  S  A  A  D  R  I  E  H  Q  R  R  K  V  K  L  L  S  M  L  D  E  :  V  D  R  R  Y  N  H  Y  C  E  Q  M  Q  M  V  V  N  S  F  D  L  V  M  G  F  G  A  A  V  P  Y  T  A  L  A  Q  K  A  M  S  R  H  F  R  C  L  K  D  A  I  G  A  Q  L  K  Q  S  C  E  L  L  G  E  K  D  A  G  T  S  G  L  T  K  G  E  T  P  R  L  K  M  L  E  Q  S  L  R  Q  Q  R  A  F  H  Q  M  G  M  M  E  Q  E  A  W  R  P  Q  R  G  L  P  E  R  S  V  N  I  L  R  A  W  L  F  E  H  F  L  H  P :   Y  P  S  D  A  D  K  H  L  L  A  R  Q  T  G  L  S  R  N  Q  :  V  S  N  W  F  I  N  A  R  V  R  L  W  K  P  M  V  E  D  M  Y  Q  Q  E  A  K  D  E  D  E  N  S  Q  S  Q  N  S  G  N  N  I  I  A  Q  T  P  T  P  N  S  L  T  N  S  S  S  T  N  I  T  T  A  T  A  A  A  T  T  T  T  A  P  T  T  T  T  A  L  A  A  A  E  T  G  T  A  A  T  P  I  T  V  T  S  S  K  R  S  Q  I  N  A  T  D  S  D  P  S  L  V  A  I  N  S  F  S  E  N  Q  A  T  F  T  T  N  I  H  D  P  D  A  C </second_frame>
            <third_frame>   K  N  *  L  S  E  K  R  E  Q  R  P  L  L  Y  F  L  P  L  I  M  C  L  S  L  T  H  T  E  R  D  K  E  N  Q  N  T  Y  V  K  V  H  L  L  I  L  R  K  N  M  F  S  *  I  I  F  P  E  G  D  C  S  I  E  *  R  T  R  N  K  K  E  T  T  A  D  S  R  E  I  E  R  D  T  H  N  S  F  A  F  Q  I  P  R  R  E  N  D  S  *  E  T  C  K  K  T  L  M  S :   R  R  K  E  M  M  K  K  K  T  T  L  P  W  E  *  Q  H  N  Q  L  H  F  V  L  V  T  N  I  Q  *  F  N  K  L  *  K  I  S  I  L  C  P  K  I  I  I  T  T  V  S  S  V  S  L  M  G  S  R  D  H  K  P  N  S  S  S  T  S  T  S  K  L  N  R  S  V  E  I  N  C  E  C  K  D  S  N  R  L  K  M  K  Q  V  A  Y  Q  Q  F  M  R  L  L  E  C  Y  L  R  C  L  I  S  L  L  E  T  P  Q  P  T  Q  R  N  Y  *  K  L  N  S  I  R  I  L  D  S  R  I  H  G  F  M  L  L  L  P  W  G  T  S  G  S  A  T  T  D  K  V  W  *  W  V  E  V  Q  V  V  N  H  W  D  M  Q  K  I  I  R  T  P  C  N  F  F  *  *  I  H  N  Q  G  H  L  L  H  L  L  L  I  Q  L  L  L  R  F  I  C  C  Y  Q  T  H  H  L  L  Q  H  F  K  G  F  L  I  R  P  K  D  L  S  V  S  S  *  H  G  G  M  E  E  Q  V  L  L  Q  P  P  I  I  S  M  P  R  M  K  S  E  G  *  T  S  *  K  V  K  A  Y  L  Y  P  C  L  L  R  Y  S  T  R  R  R  N  Y  K  *  A  E  K  L  E  E  C  C  S  S  I  K  E  G  L  V  L  P  V  N  I  D  T  R  I  *  I  W  V  D  Q  E  *  A  Q  T  F  I  K  S  M  L  G  M  G  H  P  *  E  W  S  M  C  *  G  I  P  N  T  Q  K  L  P  K  N  Y  W  K  N  S  A  V  L  E  E  V  N  *  R  R  I  T  T  K  Q  Q  P  I  T  L  V  V  A  L  T  M  K  L  L  Q  K  M  F  L  L  C  P  L  L  I  E  L  N  I  R  E  G  R  S  N  F  Y  L  C  L  M  R :   *  I  G  G  T  I  I  T  V  N  K  C  R  W  L  *  I  R  L  I  *  *  W  V  S  G  Q  Q  F  L  I  Q  H  *  H  R  R  Q  C  R  D  I  S  G  V  *  R  M  Q  *  E  H  S  *  S  R  V  V  S  Y  *  E  R  K  M  Q  E  L  R  D  *  L  K  E  K  L  R  G  L  R  C  L  N  K  V  *  G  N  K  G  R  F  T  K  W  E  *  W  N  K  R  L  G  D  H  K  E  A  Y  R  N  V  L  S  I  F  *  E  L  G  F  L  S  I  F  Y  T   : R  T  Q  V  M  L  I  N  I  C  W  Q  D  R  L  V  S  P  E  I  R :   Y  Q  I  G  S  L  M  R  G  F  G  C  G  N  P  W  *  K  I  C  I  N  K  K  P  K  M  K  M  R  I  A  K  A  K  T  V  A  I  I  *  L  H  K  H  Q  R  L  I  A  *  L  T  L  H  L  L  I  *  Q  R  Q  Q  Q  Q  Q  Q  Q  Q  Q  P  L  Q  L  R  Q  H  *  L  L  Q  R  Q  E  Q  L  P  L  P  *  L  L  P  Q  A  K  D  P  K  S  M  P  L  I  V  T  L  H  L  *  Q  S  I  P  S  R  K  T  K  L  L  L  R  P  T  F  M  I  P  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83522" stop="84742"/>
                    <exon start="85171" stop="85553"/>
                    <exon start="86881" stop="86941"/>
                    <exon start="87987" stop="88382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2061</number_coding_nucleotides>
                  <number_encoded_amino_acids>687</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRDDEEEDNAAMGIATQPITLRPCHKYPVIQQVVENLNSMSQDYHHHSLFSFPNGFERSQAEQQQHQHQQAQQIRRDKLRVQGFEPFEDETSGLPTVYETAGMLSEMFNFPPGNAATNAAELLETQFNPNFRQPNPRIHAAAAMGNEWFGNHRQGMVVGGGASSQPLGYAKNHTDSMQLFLMNPQPRSPSPSPPNSTSSTLHMLLPNPSSTPTLQGFPNPAEGSFGQFMTWGNGGASAATATHHLNAQNEIGGVNVVESQGLSLSLSSSLQHKAEELQMSGEAGGMLFFNQGGSSTSGQYRYKNMNMGGSGISPNIHQVHVGYGSSLGVVNVLRNSKYAKAAQELLEEFCSVGRGKLKKNNNKAAANNPSGGANNEASSKDVPTLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIGAQLKQSCELLGEKDAGTSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKDEDENSQSQNSGNNIIAQTPTPNSLTNSSSTNITTATAAATTTTAPTTTTALAAAETGTAATPITVTSSKRSQINATDSDPSLVAINSFSENQATFTTNIHDPDAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83004" e_stop="83266"/>
            <exon e_start="83428" e_stop="83459"/>
            <exon e_start="83519" e_stop="83856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.565" acc_prob="0.000" e_score="0.894"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="0.531"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="83004" e_stop="83266" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.565" acc_prob="0.000">
            <gDNA_intron_boundary i_start="83267" i_stop="83427" i_length="161"/>
          </intron>
          <exon e_serial="2" e_score="0.531">
            <gDNA_exon_boundary e_start="83428" e_stop="83459" e_length="32"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="83460" i_stop="83518" i_length="59"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="83519" e_stop="83856" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83004" stop="83266"/>
              <exon start="83428" stop="83459"/>
              <exon start="83519" stop="83856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCCCTTAATTATGTGTCTCTCTCTCACACACACAGAGAGAGACAAAGAAAACCAGAATACATATGTCAAAGTTCATCTTCTTATTTTAAGAAAAAATATGTTTAGCTGAATTATATTTCCAGAAGGCGATTGCAGCATAGAGTAGAGGACGAGAAATAAAAAAGAAACGACAGCAGACAGCAGAGAAATAGAGAGAGACACTCACAACAGCTTTGCCTTTCAAATCCCACGAAGAGAAAACGATAGCTGAGAAACCT : CTTTTTCAATCTCCTGACAATAATTGTATCCC : TAGAAGAAAAGAGATGATGAAGAAGAAGACAACGCTGCCATGGGAATAGCAACACAACCAATTACACTTCGTCCTTGTCACAAATATCCAGTAATTCAACAAGTTGTAGAAAATCTCAATTCTATGTCCCAAGATTATCATCACCACAGTCTCTTCAGTTTCCCTAATGGGTTCGAGAGATCACAAGCCGAACAGCAGCAGCACCAGCACCAGCAAGCTCAACAGATCCGTCGAGATAAATTGCGAGTGCAAGGATTCGAACCGTTTGAAGATGAAACAAGTGGCCTACCAACAGTTTATGAGACTGCTGGAATGTTATCTGAGATGTTTAATTTCCC</gDNA_template>
            <first_frame> F  S  S  L  N  Y  V  S  L  S  H  T  H  R  E  R  Q  R  K  P  E  Y  I  C  Q  S  S  S  S  Y  F  K  K  K  Y  V  *  L  N  Y  I  S  R  R  R  L  Q  H  R  V  E  D  E  K  *  K  R  N  D  S  R  Q  Q  R  N  R  E  R  H  S  Q  Q  L  C  L  S  N  P  T  K  R  K  R  *  L  R  N  L :   F  F  N  L  L  T  I  I  V  S   : L  E  E  K  R  *  *  R  R  R  Q  R  C  H  G  N  S  N  T  T  N  Y  T  S  S  L  S  Q  I  S  S  N  S  T  S  C  R  K  S  Q  F  Y  V  P  R  L  S  S  P  Q  S  L  Q  F  P  *  W  V  R  E  I  T  S  R  T  A  A  A  P  A  P  A  S  S  T  D  P  S  R  *  I  A  S  A  R  I  R  T  V  *  R  *  N  K  W  P  T  N  S  L  *  D  C  W  N  V  I  *  D  V  *  F  P </first_frame>
            <second_frame>  F  L  P  L  I  M  C  L  S  L  T  H  T  E  R  D  K  E  N  Q  N  T  Y  V  K  V  H  L  L  I  L  R  K  N  M  F  S  *  I  I  F  P  E  G  D  C  S  I  E  *  R  T  R  N  K  K  E  T  T  A  D  S  R  E  I  E  R  D  T  H  N  S  F  A  F  Q  I  P  R  R  E  N  D  S  *  E  T   : S  F  S  I  S  *  Q  *  L  Y  P  :  *  K  K  R  D  D  E  E  E  D  N  A  A  M  G  I  A  T  Q  P  I  T  L  R  P  C  H  K  Y  P  V  I  Q  Q  V  V  E  N  L  N  S  M  S  Q  D  Y  H  H  H  S  L  F  S  F  P  N  G  F  E  R  S  Q  A  E  Q  Q  Q  H  Q  H  Q  Q  A  Q  Q  I  R  R  D  K  L  R  V  Q  G  F  E  P  F  E  D  E  T  S  G  L  P  T  V  Y  E  T  A  G  M  L  S  E  M  F  N  F   </second_frame>
            <third_frame>   F  F  P  *  L  C  V  S  L  S  H  T  Q  R  E  T  K  K  T  R  I  H  M  S  K  F  I  F  L  F  *  E  K  I  C  L  A  E  L  Y  F  Q  K  A  I  A  A  *  S  R  G  R  E  I  K  K  K  R  Q  Q  T  A  E  K  *  R  E  T  L  T  T  A  L  P  F  K  S  H  E  E  K  T  I  A  E  K  P  :  L  F  Q  S  P  D  N  N  C  I  P :   R  R  K  E  M  M  K  K  K  T  T  L  P  W  E  *  Q  H  N  Q  L  H  F  V  L  V  T  N  I  Q  *  F  N  K  L  *  K  I  S  I  L  C  P  K  I  I  I  T  T  V  S  S  V  S  L  M  G  S  R  D  H  K  P  N  S  S  S  T  S  T  S  K  L  N  R  S  V  E  I  N  C  E  C  K  D  S  N  R  L  K  M  K  Q  V  A  Y  Q  Q  F  M  R  L  L  E  C  Y  L  R  C  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83522" stop="83854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRDDEEEDNAAMGIATQPITLRPCHKYPVIQQVVENLNSMSQDYHHHSLFSFPNGFERSQAEQQQHQHQQAQQIRRDKLRVQGFEPFEDETSGLPTVYETAGMLSEMFNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="94663" PGL_stop="95109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94663" e_stop="95109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="94663" e_stop="95109" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94663" stop="95109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACAACCAACTTGTATTACATACCTCTTACAAATCACTAACACACCAAATTGGACAATTCAAATGATACTCTAAATTTACATGATTCACACAAGGAATCAGTTAGACACCTTATATAGATGAGTAATTTATCCTTGATTTGACAGAGCCCCCGAGCTTTCTTCATTGCATACAACAGAAGTCTCCTTCAATTCAACTTAACACTGATCTTCAACAATTTCCTTTTAAATGATACCATAAACGTCTAATGTTCTGTTACCTTTGGAGTCGTAACATGGTCTAATGGGCGGGTACTTCCTGTCTCTGCATAAGGTCTGACAAATGTACGACGCCACCAGACTTCAAATGCTCTCTGAAGATTTGGACAATTATCACCTGACTTGAGGAAACTGCCTAACCAAGAAAGCAAAATGCTCTGCTGTTCCTCCAGAGGTAGTGTTAGGATT</gDNA_template>
            <first_frame> N  T  T  N  L  Y  Y  I  P  L  T  N  H  *  H  T  K  L  D  N  S  N  D  T  L  N  L  H  D  S  H  K  E  S  V  R  H  L  I  *  M  S  N  L  S  L  I  *  Q  S  P  R  A  F  F  I  A  Y  N  R  S  L  L  Q  F  N  L  T  L  I  F  N  N  F  L  L  N  D  T  I  N  V  *  C  S  V  T  F  G  V  V  T  W  S  N  G  R  V  L  P  V  S  A  *  G  L  T  N  V  R  R  H  Q  T  S  N  A  L  *  R  F  G  Q  L  S  P  D  L  R  K  L  P  N  Q  E  S  K  M  L  C  C  S  S  R  G  S  V  R  I </first_frame>
            <second_frame>  T  Q  P  T  C  I  T  Y  L  L  Q  I  T  N  T  P  N  W  T  I  Q  M  I  L  *  I  Y  M  I  H  T  R  N  Q  L  D  T  L  Y  R  *  V  I  Y  P  *  F  D  R  A  P  E  L  S  S  L  H  T  T  E  V  S  F  N  S  T  *  H  *  S  S  T  I  S  F  *  M  I  P  *  T  S  N  V  L  L  P  L  E  S  *  H  G  L  M  G  G  Y  F  L  S  L  H  K  V  *  Q  M  Y  D  A  T  R  L  Q  M  L  S  E  D  L  D  N  Y  H  L  T  *  G  N  C  L  T  K  K  A  K  C  S  A  V  P  P  E  V  V  L  G   </second_frame>
            <third_frame>   H  N  Q  L  V  L  H  T  S  Y  K  S  L  T  H  Q  I  G  Q  F  K  *  Y  S  K  F  T  *  F  T  Q  G  I  S  *  T  P  Y  I  D  E  *  F  I  L  D  L  T  E  P  P  S  F  L  H  C  I  Q  Q  K  S  P  S  I  Q  L  N  T  D  L  Q  Q  F  P  F  K  *  Y  H  K  R  L  M  F  C  Y  L  W  S  R  N  M  V  *  W  A  G  T  S  C  L  C  I  R  S  D  K  C  T  T  P  P  D  F  K  C  S  L  K  I  W  T  I  I  T  *  L  E  E  T  A  *  P  R  K  Q  N  A  L  L  F  L  Q  R  *  C  *  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="98744" PGL_stop="98038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98744" e_stop="98038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="98744" e_stop="98038" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98744" stop="98038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570395" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGCAGAACTTCCCCATGATAACGCATAGTGGATGTTGTAAATGCCATATATTGAATTAGTTAGGCATTGAGTCTTTTCAAGAATGGCTGAAATTAGACTGACAAAGGTAGAACAAGGCCAAACCAAAATTAGGAATGTTCCAATTGCTGTGACC</gDNA_template>
            <first_frame> P  I  F  Q  F  I  *  E  G  S  S  S  F  H  S  V  K  S  L  I  W  W  F  P  S  C  L  T  S  K  L  S  F  N  H  F  Q  C  L  F  L  G  L  L  N  *  K  I  W  G  F  Q  E  N  L  R  *  L  S  L  F  V  V  E  Y  L  L  F  S  L  F  Q  E  F  G  C  F  K  N  P  F  C  P  A  I  L  H  L  *  E  W  *  V  S  T  L  L  S  L  F  L  D  N  Y  T  V  K  G  L  I  F  C  F  V  C  C  P  F  G  E  R  K  K  G  T  I  C  V  F  F  I  V  K  C  W  S  S  S  Y  L  L  S  E  G  K  R  L  A  L  *  C  F  V  L  I  S  R  Y  S  F  L  *  S  K  S  S  L  V  L  C  S  Q  P  D  F  N  F  I  I  P  *  V  K  K  M  Q  N  F  P  M  I  T  H  S  G  C  C  K  C  H  I  L  N  *  L  G  I  E  S  F  Q  E  W  L  K  L  D  *  Q  R  *  N  K  A  K  P  K  L  G  M  F  Q  L  L  *   </first_frame>
            <second_frame>  Q  F  F  N  S  Y  R  R  G  A  H  H  S  T  L  L  N  L  *  F  G  G  S  L  H  A  *  H  Q  S  F  H  S  I  I  F  N  A  S  S  L  D  F  *  I  K  R  F  G  V  F  K  K  I  S  D  S  S  L  C  L  *  L  S  I  C  C  F  L  Y  F  K  N  L  G  V  S  R  I  P  F  V  L  P  F  Y  T  F  R  S  G  E  F  Q  L  F  F  L  C  F  L  T  T  I  L  L  K  V  *  S  F  V  L  F  A  V  L  L  E  N  E  R  K  E  Q  F  V  F  F  L  L  L  S  V  G  V  V  A  I  F  Y  Q  R  G  K  D  *  L  F  D  V  L  S  *  L  V  D  I  H  S  Y  D  Q  R  V  P  *  F  C  V  V  N  L  I  S  I  S  S  S  L  K  *  K  K  C  R  T  S  P  *  *  R  I  V  D  V  V  N  A  I  Y  *  I  S  *  A  L  S  L  F  K  N  G  *  N  *  T  D  K  G  R  T  R  P  N  Q  N  *  E  C  S  N  C  C  D  </second_frame>
            <third_frame>   N  F  S  I  H  I  G  G  E  L  I  I  P  L  C  *  I  S  D  L  V  V  P  F  M  L  D  I  K  A  F  I  Q  S  F  S  M  P  L  P  W  T  F  K  L  K  D  L  G  F  S  R  K  S  Q  I  A  L  S  V  C  S  *  V  F  V  V  F  S  I  S  R  I  W  V  F  Q  E  S  L  L  S  C  H  F  T  P  L  G  V  V  S  F  N  S  S  F  F  V  S  *  Q  L  Y  C  *  R  F  D  L  L  F  C  L  L  S  F  W  R  T  K  E  R  N  N  L  C  F  F  Y  C  *  V  L  E  *  *  L  S  F  I  R  G  E  K  I  S  S  L  M  F  C  P  N  *  *  I  F  I  L  M  I  K  E  F  L  S  S  V  *  S  T  *  F  Q  F  H  H  P  L  S  K  K  N  A  E  L  P  H  D  N  A  *  W  M  L  *  M  P  Y  I  E  L  V  R  H  *  V  F  S  R  M  A  E  I  R  L  T  K  V  E  Q  G  Q  T  K  I  R  N  V  P  I  A  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100677" PGL_stop="101130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100677" e_stop="101130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="100677" e_stop="101130" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100677" stop="101130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACA</gDNA_template>
            <first_frame> T  K  S  M  C  P  S  N  I  K  T  A  F  I  V  V  K  Y  M  G  M  G  L  R  L  R  I  *  S  Y  I  Y  S  R  T  Y  N  F  *  L  R  D  F  E  F  K  F  Y  F  I  L  F  F  S  V  L  H  Y  F  Y  *  G  A  W  K  F  C  G  A  N  S  K  *  K  T  K  E  T  N  R  E  D  L  T  M  S  M  I  C  L  P  N  L  K  I  S  R  L  F  I  F  H  F  I  F  R  T  N  I  C  C  C  S  N  *  I  Y  S  I  N  K  V  N  I  K  E  L  E  K  N  L  I  I  E  V  V  K  N  V  N  Y  G  V  I  P  V  N  R  K  I  N  </first_frame>
            <second_frame>  Q  N  L  C  A  P  L  I  L  K  Q  P  S  S  L  *  N  I  W  E  W  D  F  V  *  E  S  D  H  I  Y  I  P  G  H  T  I  F  N  *  E  I  L  N  L  N  F  I  L  F  Y  F  F  P  Y  Y  I  I  F  T  R  E  H  G  N  F  A  A  R  I  L  N  E  K  Q  K  K  Q  I  E  K  T  *  L  *  V  *  S  V  Y  P  I  *  K  S  R  G  S  L  Y  F  I  L  F  L  G  Q  I  Y  V  V  V  L  I  E  Y  I  R  *  I  K  *  T  *  R  N  *  R  K  I  *  *  L  K  *  *  K  M  *  I  M  E  *  Y  L  L  T  E  K  L  T </second_frame>
            <third_frame>   K  I  Y  V  P  L  *  Y  *  N  S  L  H  R  C  K  I  Y  G  N  G  T  S  F  K  N  L  I  I  Y  I  F  P  D  I  Q  F  L  I  K  R  F  *  I  *  I  L  F  Y  F  I  F  F  R  I  T  L  F  L  L  G  S  M  E  I  L  R  R  E  F  *  M  K  N  K  R  N  K  *  R  R  P  N  Y  E  Y  D  L  F  T  Q  F  K  N  L  E  A  L  Y  I  S  F  Y  F  *  D  K  Y  M  L  L  F  *  L  N  I  F  D  K  *  S  K  H  K  G  I  R  E  K  F  D  N  *  S  S  E  K  C  K  L  W  S  N  T  C  *  Q  K  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0111M10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="101917" PGL_stop="102639"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101917" e_stop="102311"/>
            <exon e_start="102384" e_stop="102639"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.687" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101917" e_stop="102311" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.687">
            <gDNA_intron_boundary i_start="102312" i_stop="102383" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102384" e_stop="102639" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101917" stop="102311"/>
              <exon start="102384" stop="102639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATTTCTTCCCCTTTAGTTAAGCCTTAAATTGATAAATAGATTTACTCGACACCGTTAACAAGTAATGGTGAAATTTATCAAGTTTTGAGTTCTCCTCATAACCATGAAAAAATTTTGGTGAAGGGATGCAAAAGTCCTGGTCAACATCATTTCACAATAAAATATACTACTGTACTTGTTTATCAATGAAAGTAGTTGGCTTAGATCATCTAATCTTCCTGGCACAACTTCAAAGGAAGAGTCAAATCTCTACACCAGTAGATACAACATGAAAGCAGAATCATCTTCTCAAAAACACATGAAATCATCAAGATTTACAGTTTCTACGTGTTCTTCACTATTAATGGCTTTCCTTTTTGCTCTCTCTGCATCTTTCCAATTCAATGACCCTG : ATTGGTATTTGTGGTTTCCTCTATATGCAATGGCTTGCCTTGTCAACTTGGTCAATGGATCAAACAAAATAGCCAAAACTACTCTCTTGTTGGGAACCATCTTATTCCTCAAAGATGTTTGTTTTCTTCAAGGAATATCTGGAATTTGGTCATTTGATATGAGGGAGAGAGTTGTGAGGGAAAAGGTTGGAAGTGGACTTGTTATTCTCTCCATGTCTATACAACTTCAAAAAGGAAACCCTAATAATACAACCCT</gDNA_template>
            <first_frame> R  I  S  S  P  L  V  K  P  *  I  D  K  *  I  Y  S  T  P  L  T  S  N  G  E  I  Y  Q  V  L  S  S  P  H  N  H  E  K  I  L  V  K  G  C  K  S  P  G  Q  H  H  F  T  I  K  Y  T  T  V  L  V  Y  Q  *  K  *  L  A  *  I  I  *  S  S  W  H  N  F  K  G  R  V  K  S  L  H  Q  *  I  Q  H  E  S  R  I  I  F  S  K  T  H  E  I  I  K  I  Y  S  F  Y  V  F  F  T  I  N  G  F  P  F  C  S  L  C  I  F  P  I  Q  *  P  * :   L  V  F  V  V  S  S  I  C  N  G  L  P  C  Q  L  G  Q  W  I  K  Q  N  S  Q  N  Y  S  L  V  G  N  H  L  I  P  Q  R  C  L  F  S  S  R  N  I  W  N  L  V  I  *  Y  E  G  E  S  C  E  G  K  G  W  K  W  T  C  Y  S  L  H  V  Y  T  T  S  K  R  K  P  *  *  Y  N  P </first_frame>
            <second_frame>  G  F  L  P  L  *  L  S  L  K  L  I  N  R  F  T  R  H  R  *  Q  V  M  V  K  F  I  K  F  *  V  L  L  I  T  M  K  K  F  W  *  R  D  A  K  V  L  V  N  I  I  S  Q  *  N  I  L  L  Y  L  F  I  N  E  S  S  W  L  R  S  S  N  L  P  G  T  T  S  K  E  E  S  N  L  Y  T  S  R  Y  N  M  K  A  E  S  S  S  Q  K  H  M  K  S  S  R  F  T  V  S  T  C  S  S  L  L  M  A  F  L  F  A  L  S  A  S  F  Q  F  N  D  P   : D  W  Y  L  W  F  P  L  Y  A  M  A  C  L  V  N  L  V  N  G  S  N  K  I  A  K  T  T  L  L  L  G  T  I  L  F  L  K  D  V  C  F  L  Q  G  I  S  G  I  W  S  F  D  M  R  E  R  V  V  R  E  K  V  G  S  G  L  V  I  L  S  M  S  I  Q  L  Q  K  G  N  P  N  N  T  T   </second_frame>
            <third_frame>   D  F  F  P  F  S  *  A  L  N  *  *  I  D  L  L  D  T  V  N  K  *  W  *  N  L  S  S  F  E  F  S  S  *  P  *  K  N  F  G  E  G  M  Q  K  S  W  S  T  S  F  H  N  K  I  Y  Y  C  T  C  L  S  M  K  V  V  G  L  D  H  L  I  F  L  A  Q  L  Q  R  K  S  Q  I  S  T  P  V  D  T  T  *  K  Q  N  H  L  L  K  N  T  *  N  H  Q  D  L  Q  F  L  R  V  L  H  Y  *  W  L  S  F  L  L  S  L  H  L  S  N  S  M  T  L  :  I  G  I  C  G  F  L  Y  M  Q  W  L  A  L  S  T  W  S  M  D  Q  T  K  *  P  K  L  L  S  C  W  E  P  S  Y  S  S  K  M  F  V  F  F  K  E  Y  L  E  F  G  H  L  I  *  G  R  E  L  *  G  K  R  L  E  V  D  L  L  F  S  P  C  L  Y  N  F  K  K  E  T  L  I  I  Q  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0111M10.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102080" stop="102311"/>
                    <exon start="102384" stop="102637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NILLYLFINESSWLRSSNLPGTTSKEESNLYTSRYNMKAESSSQKHMKSSRFTVSTCSSLLMAFLFALSASFQFNDPDWYLWFPLYAMACLVNLVNGSNKIAKTTLLLGTILFLKDVCFLQGISGIWSFDMRERVVREKVGSGLVILSMSIQLQKGNPNNTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 63312 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 3517 bytes was the average size of a spliced alignment
$ 21920 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1565 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:06:25
-->
