<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:57:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555710" ref_strand="+" ref_description="SGN-E555710 [cTSD-1-C24]">
      <seq>gccatgatacagattttacaagatgtctatgtgcattattgtactgctgagaagtattgataagttgtaacaaatattactactttttttttttagtttgtgcattacaagtctaccgaaaactgatagaatttcatctattctctatgtttttcgacaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgtgataaggcgcgtgaagtggagttctattgttttacccaagcattttggtcccttgttttgttgctacaggtggtgaaagccatggaaggcttaatgccaaggcctttggctcagccaaatgacccacaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="1418" stop="31"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1118" g_stop="331" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E555710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1118" e_stop="331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTAC-TTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</genome_strand>
        <mrna_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554880" ref_strand="+" ref_description="SGN-E554880 [cTSC-5-L17]">
      <seq>gccatgatacagattttacaagatgtctatgtgcattattgtactgctgagaagtattgataagttgtaacaaatattactactttttttttttagtttgtgcattacaagtctaccgaaaactgatagaatttcatctattctctatgtttttcgacaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgtgataaggcgcgtgaagtggagttctattgttttacccaagcattttggtcccttggtttgttgctacaggtggtgaaagccatggaaggcttaaggccaaggcctttggctcagccaaatggaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="1418" stop="41"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1118" g_stop="341" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="780" r_length="780" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E554880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1118" e_stop="341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTAC-TTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAAT-GACCCA</genome_strand>
        <mrna_strand>GCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGGTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAAGGCCAAGGCCTTTGGCTCAGCCAAATGGACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203400" ref_strand="+" ref_description="SGN-E203400 [cLEB-3-H16]">
      <seq>gcacgagatagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggaaagccaacaaagttattccagatctctaaaacgagatggtgacttttataagggactgcaccagttggaccatttccaaacaccccaacttacaccattgaacacaccctttcctcttaattccaaacatttgggaagaaaataatgtttgtcctaaaaagtgttttttgcaaaaactgaaattgttatttactgaaacttttttaagctaatagtttggtggagaagaggttccatagagtccaaaaattagtaaatcctaccccagaaggaaacgaaatacagctattccctttccactttacagctcctctagttgtgttttctaatacttgacgcaagtgacaatttgccttccttgtcataggaattcagaattttaagtttgtgtctaagtgcgtgcgtgattgtgtctgataatatagattaattagcgaatccaatttagatgaatgcttgcaaatgagaagatgtttctcatctcattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="1580" stop="167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1281" g_stop="1197" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1196" i_stop="960" i_length="237">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="959" g_stop="467" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="578" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E203400" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1281" e_stop="1197"/>
          <exon e_start="959" e_stop="467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</genome_strand>
        <mrna_strand>GCACGAGATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG.............................................................................................................................................................................................................................................GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331524" ref_strand="+" ref_description="SGN-E331524 [cTOD-9-M22]">
      <seq>aaggatagccccagatcccggcgagggtgcttttttccgtcgatctctccaccgaagctctttgttccaatcattagcaacctcgtcggagctccggtcttttcccatcggtgaaaagctccgtcaggaattgagagggatggacattggtagagataggataagactggatgcactcatctcaccgccgcaacaaaaattgttgccggagattgagtcagaagccgaggaggagaaattcacggtggcggatgcaaagaaggttatgagattggcacaactggaggtggtgaaatcgaggctgaggcagatggagaatgactggatttcttttccggaattttttcagatctgcaatggcgcttcttcaaactccgatcaagccatagaattcgcaaagatgctcgatcaatcaggaattgtacttgttttgggaaacgtcgtattccttaagcctgataaggttggttttctattatttttttttccgattcatgctttttccccttataaaattttcaatgtggatttccataacttgccatgatacagattttacaagatgtctatgtgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="1959" stop="781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1659" g_stop="1081" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E331524" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1659" e_stop="1081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTA</genome_strand>
        <mrna_strand>AAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTA-TTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364294" ref_strand="+" ref_description="SGN-E364294 [cLPP-20-I16]">
      <seq>aaaaaacttgtagctcaacgtcttttcgattcatacaaaattagtcgtccttccctatcaacatgccgtatttgttcctcatccatgaccaaatcgatggcttctcctaatcctgaaaggatagccccagatcccggcgagggtgcttttttccgtcgatctctccaccgaagctctttgttccaatcattagcaacctcgtcggagctccggtcttttcccatcggtgaaaagctccgtcaggaattgagagggatggacattggtagagataggataagactggatgcactcatctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="2075" stop="1174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1775" g_stop="1474" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E364294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1775" e_stop="1474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACC</genome_strand>
        <mrna_strand>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCATCCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722603" ref_strand="+" ref_description="SGN-E722603 [FC17DA12]">
      <seq>gggcgaatggcggccaatcggccgaattgttcagaaagatttgtctccttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaaaaaaaaaaaaaaaaaaaaaaagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38793" stop="132615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39101" g_stop="39288" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="222" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="323" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41695" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="617" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41696" i_stop="41785" i_length="90">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41786" g_stop="41810" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="642" r_length="25" r_score="0.480"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E722603" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39101" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41695"/>
          <exon e_start="41786" e_stop="41810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTATTTCTTTCTGTGTCTTCTGTTAATCAGAAAACCAGCACCAGTAGCCAGACTC</genome_strand>
        <mrna_strand>AAAGATTTGTCTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAAA..........................................................................................AAAAAAAAAAAAAAAAAAAAGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308720" ref_strand="+" ref_description="SGN-E308720 [cLEZ-11-G22]">
      <seq>agagagagataaagatttgtttccttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38799" stop="41945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39101" g_stop="39288" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="198" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="299" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41645" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="543" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E308720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39101" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCT</genome_strand>
        <mrna_strand>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458591" ref_strand="+" ref_description="SGN-E458591 [cPRO-6-A16]">
      <seq>cttgaattactcttacagagcaagaataagaagacagacagaaagaaaaagatagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagattcatttgaatcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38814" stop="41908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39101" g_stop="39108" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="55" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39109" i_stop="39160" i_length="52">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39161" g_stop="39288" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="183" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="284" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="382" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41500" g_stop="41608" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="491" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E458591" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39101" e_stop="39108"/>
          <exon e_start="39161" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTG</genome_strand>
        <mrna_strand>AAAGATAG....................................................CAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGATTCATTTGAATCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713986" ref_strand="+" ref_description="SGN-E713986 [FB10AG12]">
      <seq>gtttccttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgtgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaatgttgtttttagctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38809" stop="42040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39109" g_stop="39288" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="281" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="379" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41740" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="620" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="639"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E713986" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39109" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTT</genome_strand>
        <mrna_strand>GTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGTGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356966" ref_strand="+" ref_description="SGN-E356966 [cTOS-22-L4]">
      <seq>cttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtggcttgggtatttttaatatcagcttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38814" stop="42007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39114" g_stop="39288" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="276" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="374" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41707" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="582" r_length="208" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E356966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39114" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATT</genome_strand>
        <mrna_strand>CTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGGCTTGGGTATTTTTAATATCAGCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540160" ref_strand="+" ref_description="SGN-E540160 [TUS-60-E18](-)">
      <seq>ttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaatgttgtttttagcttttctaaaaaaaaaaaaaacaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38815" stop="42044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39115" g_stop="39288" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="275" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="373" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41743" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="617" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="645"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E540160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39115" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCT</genome_strand>
        <mrna_strand>TTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E540163" ref_strand="+" ref_description="SGN-E540163 [TUS-60-E18]">
      <seq>ttgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaatgttgtttttagcttttctaaaaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38815" stop="42044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39115" g_stop="39288" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="275" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="373" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41743" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="617" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="648"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E540163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39115" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCT</genome_strand>
        <mrna_strand>TTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286506" ref_strand="+" ref_description="SGN-E286506 [cLES-12-B9]">
      <seq>tgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38816" stop="42025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39116" g_stop="39288" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="372" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41725" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="598" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E286506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39116" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAAT</genome_strand>
        <mrna_strand>TGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281642" ref_strand="+" ref_description="SGN-E281642 [cLER-14-B9]">
      <seq>tgaattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgttccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38816" stop="41998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39116" g_stop="39288" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="274" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="372" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41698" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="571" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E281642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39116" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATC</genome_strand>
        <mrna_strand>TGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTTCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714061" ref_strand="+" ref_description="SGN-E714061 [FB10BF07]">
      <seq>aattactcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38818" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39118" g_stop="39288" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="272" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="370" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41727" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="598" r_length="228" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E714061" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39118" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGT</genome_strand>
        <mrna_strand>AATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712149" ref_strand="+" ref_description="SGN-E712149 [FB04AB10]">
      <seq>ctcttacagagcaagaagaagaagaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38823" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39123" g_stop="39288" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="267" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="365" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41716" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="582" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="597"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E712149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39123" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACAC</genome_strand>
        <mrna_strand>CTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453186" ref_strand="+" ref_description="SGN-E453186 [cSTS-19-M7]">
      <seq>gacagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcccaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgntacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtatttttatatcagctggatttggaaacancgtattaatgttgtttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38854" stop="42037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39137" g_stop="39288" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="252" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="350" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41737" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="585" r_length="235" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E453186" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39137" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGC</genome_strand>
        <mrna_strand>GACAGAAAGAAAGAAAAAG-AGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGNTACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTT-ATATCAGCTGGATTTGGAAACANCGTATTAATGTTGTTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E566764" ref_strand="+" ref_description="SGN-E566764 [5203]">
      <seq>acagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggtgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtattttcaatatcagctggatttggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38854" stop="42015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39137" g_stop="39288" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="251" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="349" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41715" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="563" r_length="214" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E566764" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39137" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACA</genome_strand>
        <mrna_strand>ACAGAA-AGAAAGAAAAAG-AGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGTGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTCAATATCAGCTGGATTTGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353142" ref_strand="+" ref_description="SGN-E353142 [cTOS-14-G9]">
      <seq>agaagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38845" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39145" g_stop="39288" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="245" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="343" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41728" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="572" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E353142" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39145" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTT</genome_strand>
        <mrna_strand>AGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732118" ref_strand="+" ref_description="SGN-E732118 [LB01BC10]">
      <seq>aagacgtagaagagcaatggaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38847" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39147" g_stop="39288" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="243" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="341" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41725" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="567" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E732118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39147" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAAT</genome_strand>
        <mrna_strand>AAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612828" ref_strand="-" ref_description="SGN-E612828 [62595]">
      <seq>gtttcccttgaattactcttacagagcaagaataagaagacagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcccaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggaccctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtatttttaatatcagctggatttggaaacacgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38809" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39159" g_stop="39288" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="189" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="290" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="388" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41725" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="613" r_length="225" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41726" i_stop="41785" i_length="60">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41786" g_stop="41790" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="618" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E612828" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612828" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39159" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41725"/>
          <exon e_start="41786" e_stop="41790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGA-CCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTATTTCTTTCTGTGTCTTCTGTTAATCAGAAAAC</genome_strand>
        <mrna_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTTAATATCAGCTGGATTTGGAAACACGTAAAAAAA............................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585159" ref_strand="+" ref_description="SGN-E585159 [66878]">
      <seq>gtttccttgaattactcttacagagcaagaataagaagacagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcccaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtatttttaatatcagctggatttggaaacacgtaattaatgttgtttttaccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38809" stop="42041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39159" g_stop="39288" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="188" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="289" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41748" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="634" r_length="247" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E585159" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39159" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTT</genome_strand>
        <mrna_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTTAATATCAGCTGGATTTGGAAACACGTAATTAATGTTGTTTTTACCTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E566763" ref_strand="+" ref_description="SGN-E566763 [5202]">
      <seq>atcccccggctgagaatcggcacgaggacagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctagcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctggaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggtgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttggtaatgctgctgctgtgtacttgtcgtctcctataaaccttggtgtcttgagtatttttaatatcagcctggatttggaaacacgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38854" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39159" g_stop="39288" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="177" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="277" r_length="100" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="376" r_length="99" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41716" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="594" r_length="218" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="606"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E566763" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39159" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCT-GAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTT-GTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTT-GTGTCTTGGGTATTTTTAATATCAG-CTTGATTTGGAAACAC</genome_strand>
        <mrna_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTA-GCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGTGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGGTGTCTTGAGTATTTTTAATATCAGCCTGGATTTGGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570691" ref_strand="+" ref_description="SGN-E570691 [15316]">
      <seq>cttgaattactcttacagagcaagaataagaagacagaaagaaagaaaaagagagcaatggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcccaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtatttttaatatcagctggatttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38814" stop="42013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39159" g_stop="39288" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="183" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="284" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="382" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41713" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="594" r_length="212" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E570691" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39159" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAA</genome_strand>
        <mrna_strand>AGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTTAATATCAGCTGGATTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476413" ref_strand="+" ref_description="SGN-E476413 [cSTB-44-P1]">
      <seq>ggaagattcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcccaaagaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaaaggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaacctgtgtcttgagtatttttaatatcagctggatttggaaacacgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38865" stop="132611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39165" g_stop="39288" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="225" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="323" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41716" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="538" r_length="215" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41717" i_stop="41917" i_length="201">
            <donor d_prob="0.165" d_score="0.90"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41918" g_stop="41937" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="557" r_length="19" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E476413" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39165" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41716"/>
          <exon e_start="41918" e_stop="41937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTATTTCTTTCTGTGTCTTCTGTTAATCAGAAAACCAGCACCAGTAGCCAGACTCAACCCCTTCCTTATCTTTTCATGTTTGATTAAAGAAAGGCTTGCGATTGGATGACTAAGGATTGATCCCATCTCCTTCCGTGAACTAAATCGTATATACATCTTTAGGGTAAAAGGAAGCAGCATAA</genome_strand>
        <mrna_strand>GGAAGATTCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAAAGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAAGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAAACCTGTGTCTTGAGTATTTTTAATATCAGCTGGATTTGGAAACAC.........................................................................................................................................................................................................-GTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350806" ref_strand="+" ref_description="SGN-E350806 [cTOS-7-A3]">
      <seq>gaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38866" stop="42011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39166" g_stop="39288" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41711" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="534" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E350806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39166" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGA</genome_strand>
        <mrna_strand>GAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354749" ref_strand="+" ref_description="SGN-E354749 [cTOS-19-A9]">
      <seq>gaagattcaaagaagatcgcacacgaaattggaggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38866" stop="42009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39166" g_stop="39288" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41709" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="532" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E354749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39166" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTG</genome_strand>
        <mrna_strand>GAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408327" ref_strand="+" ref_description="SGN-E408327 [PPI-10-F6]">
      <seq>tcaaagaagatcgcacacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgggtatttntaatatcagctggatttggaaacacgtaattaatgttggttttaccttttctatnttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38872" stop="42048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39172" g_stop="39288" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="218" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="316" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41758" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="573" r_length="257" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E408327" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39172" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTA</genome_strand>
        <mrna_strand>TCAAAGAAGATCGCACACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGGGTATTTNTAATATCAGCTGGATTTGGAAACACGTAATTAATGTTGGTTTTACCTTTTCTATNTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404980" ref_strand="+" ref_description="SGN-E404980 [PPC-16-E9]">
      <seq>cgccacgaaattgggggagtgagaaacgatgcgtttcgattcgggcttcatggtgttaagagcgacatcgttggatctcatcctctcgagtcttcttatcactctacgaaggctaggcaacaggagatgaagaggaagatacttgcaaatacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttccagatttcagaggccaccgggggcaataccatcttcaatgattgggttagaatccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactgtaacttgtaatgctgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttggggtatttttaatatcagctggatttggaaacacgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38883" stop="42024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39183" g_stop="39288" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.808" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="206" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="304" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41727" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="534" r_length="230" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E404980" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39183" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTG-T--GTACTTGTCGTCTCCTATAAGCCTTGTGTCTT-GGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGT</genome_strand>
        <mrna_strand>CGC-CACGAAATTGGGGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTTGGATCTCATCCTCTCGAGTCTTCTTATCACTCT.............................................................................ACGAAGGCTAGGCAACAGGAGATGAAGAGGAAGATACTTGCAAATACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCGGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGGGGTATTTTTAATATCAGCTGGATTTGGAAACACGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350126" ref_strand="+" ref_description="SGN-E350126 [cTOS-4-P6]">
      <seq>cttcatggtgttaagagcgacatcgtcggatctcatcctctcgagtctgcttatcactctacgaaggctaggcaatacgaaatgaagaggaagatacttgcaaacacctacgggtcggctttccctatgaagttagagctcgatcgccaaattctttcgagatttcagaggccaccaggggcaataccatcttcaatgattgggttagaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaatgttgtttttagcttttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="38929" stop="42044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39229" g_stop="39288" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39366" g_stop="39466" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="161" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="259" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41500" g_stop="41752" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="512" r_length="253" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E350126" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39229" e_stop="39288"/>
          <exon e_start="39366" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCTGTAATTCTCCTTTCTCCTAACTGTTATTGATTTTCTTGCCTATACACGTACGTTTCTGATTTCTCCTTTGGGGACAGACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTC</genome_strand>
        <mrna_strand>CTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT.............................................................................ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222291" ref_strand="+" ref_description="SGN-E222291 [cLEL-16-I24](-)">
      <seq>gctttccctatgaagttagagctcgatcgccaaattctttcgagatttcaaaggccaccaggggcaataccatcttcaatgaattgggttagaatccctaaccggaggtctaaaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtggacatgtcgtctcctataagccatgtgtcttgggaatttttaaaatcagcttgatttggaaacacgtaattaatgttgtttttagcttttctattttctccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="39123" stop="132611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39423" g_stop="39466" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40310" g_stop="40407" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="143" r_length="99" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41500" g_stop="41748" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="392" r_length="249" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41749" i_stop="42279" i_length="531">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.238" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42280" g_stop="42302" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="414" r_length="22" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E222291" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39423" e_stop="39466"/>
          <exon e_start="40310" e_stop="40407"/>
          <exon e_start="41500" e_stop="41748"/>
          <exon e_start="42280" e_stop="42302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAGGTTAGTGTTTGTTTTGTTACTCGTAGTTTTATATCTCTCAACGCATTGTTAGACTCTAGCTATAGTGTTAGTTTGGTTCGAATTCTGTGGTGAATGAAAGGGTTTTGATTGCGAAACCCCCTTTTTGTGCTTCACTAGGGTTCAGTCCTTTTTGATTGTGAAAGTTAAACTGGACTTGAATTGAGCGGAACTAATTTATATGCCTCAATCTTAACCTTTCGTTTTATGGTCAAATTTATGGGGTTTTCCATGCTCATGGTTTTTGACTCATTTTTCCTCTCCTCTTTGGATTTCAACCAATTAAACTGAATTCCCTTGTTAAGTTGATTTGTGTTATATTATGTTAGGAGTTCTCCCCCTTTGTATAGGTAGAAAGGGGTGTTTGTTTGGATTAATTGAGAGAGGGAATGAAGGAGGTCTATTCAGTTGCCAAACTGGCAGAGGTTAGTAATTCACCCATAAAGTCCAATTACTTTGAATATAAATGGGAACTTTCACAAGAAAACTGGTAAAGCCAAAGGTTTTATGAGGGAAGATAAGCTAGTTAGGGCTAAAAAAGCAAGTGTAAACTTGCTTCATTTAGAAATATATAAGGCTTTGATAAACGCTTCTAGTTTCATCCTCCAAGTCCATGAAGATTTCTGTCAGACTAGATACAGCTCATTAGCAGATTCTCTCTGTAAATTCCTGCATGTTGTTTCTCTCTTTGTTTGGTGCAACTGTTGAAACTTAACTTTTCTTTTGGGGTTTTGGACAATAGTACTAATGCAGGAGCGAGTCTGTTTGACACAGAGTTTGTGGGTTCCGTTTTTGCTGAATTTCTTTTCCCTTCTTAATTTGCAGATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATG-ATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTATTTCTTTCTGTGTCTTCTGTTAATCAGAAAACCAGCACCAGTAGCCAGACTCAACCCCTTCCTTATCTTTTCATGTTTGATTAAAGAAAGGCTTGCGATTGGATGACTAAGGATTGATCCCATCTCCTTCCGTGAACTAAATCGTATATACATCTTTAGGGTAAAAGGAAGCAGCATAACCAAAGTGCCATAGAGAAGGAAACGACCAAGAGAGAAAACACTCGCTGCCAATCGAAGATGAAGGACCGATCATGATTTTTATAAATCACATTCGAAGTATAAAATAATGAACAAACAAAAACAAGTCTTTTCCACTATTACAGTGATTAGTTATCAATTGACTCAGTCCAACAAGAGTAGGACATATATAGGATTGCAATGAACAAGTGATAAGAATGTTAACATGTAATTAGGACAAATCAAGTAATAATTTATTGATGAACAATAATGGCTTAATGTTTTGTATTTTATACAACACATTGCACGTTGCTCCCTTTGCAAAATTCCATTACTACACACAGCATCCACCATTAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAAGGCCACCAGGGGCAATACCATCTTCAATGAATTGGGTTAGAATCCCTAACCGGAGGTCTAAAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGGACATGTCGTCTCCTATAAGCCATGTGTCTTGGGAATTTTTAAAATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCCCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222377" ref_strand="+" ref_description="SGN-E222377 [cLEL-16-I22](-)">
      <seq>aataccatcttcaatgattgggttaaaatccctaaccggaggtctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggcgtggaagttcgccttgggctttccaagggacctgtgtgtcccagtttcatttgaatcctttgcaattgattgagaaactctgtaacttgtaatactgctgctgtgtacttgtcgtctcctataagccttgtgtcttgggtatttttaatatcagcttgatttggaaacacgtaattaatgttgtttttagcttttctattttcttccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="40031" stop="42055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40331" g_stop="40407" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41500" g_stop="41754" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="332" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="348"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E222377" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40331" e_stop="40407"/>
          <exon e_start="41500" e_stop="41754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCA</genome_strand>
        <mrna_strand>AATACCATCTTCAATGATTGGGTTAAAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586462" ref_strand="+" ref_description="SGN-E586462 [60517]">
      <seq>cctcgtgccgaattcggcacgaggccctaaccggagggctagaggactttgcttttgaggactacctgaatgatcctaaggaatctgagagctttcgtccagttgacatgcatcatggtgtggaagttcgccttgggctttctaagggacctgtgtgtcccagtttcatttgaatcctttgcagttgattgagaaactgtaacttgtaatgctgctgctgtgtacttgtcgtctcctataaaccttgtgtcttgagtatttttaatatcagctggatttggaaacacgtaattaatgttgtttttaccttttctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="40046" stop="42044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40336" g_stop="40407" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.806"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41500" g_stop="41749" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="320" r_length="248" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E586462" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40336" e_stop="40407"/>
          <exon e_start="41500" e_stop="41749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATGGTATTGAAATCCTTATGATATATTATCTCATTAAAATTATTTTTAACATGCTGCTAACATAAAAACTTGTCCATTCATGATGAATACTCATAATACCCCAACTTGTTTGGGATTGAGTTGTTTTTGTTGCATGTTGACCATGCTTTTCCATGGTAGATGCCTTTAATGAATATCGCTTTTGTTTGGTTGCCATTAACTCATAAGATATTGGAGCAAGATTGCTTATGGCACGTGTCTAAGGTCTAATAGAACTGTTTAGTATGGGCAAGTTCTAACTATCTACTCTCTCTGTAAAATTTTATATGACGATCTCAGGCTGGATACTAAATTCTATGACATATAAGTTAAATGCACAGAACATTTTTAATTGCCTTGAAATATATGTCTTCAACATGGTTATATCATTCCAATAGAAGCATATCAGTAAAGGTTAGGAGGAGTGTCAGAACTAAAGAGTGTGTAGAGAAATGTGTCTATATTTGGAATGGATGAAAAAGAAAAGAGTGTCATATTAAATAAAACATACGGAGTACTTAGTTCTCATATACAAAGAAATTTATTCTCGTTTTTCTCTGAACTAATGCAAGGTAAGAGTTGCTTCTCTGGAAGTAGAAATTAGGCAACCTGCTCAGACTGATTAGACCTGATCTACTGCTTAATTGAGATAATTTGACATCAGATGGATGCCAGCTGATTCCATTGTAAATAATGTAATAACTTGTGCCAACCAATTCCTCCCACTTCCTGGAACTTGTTGACGCTAATGTAAAATTTCCATGGTTTTTCACTAAGTTCTTCAGTGCATAAAGTACTAGTTTCCCTCTAACGTCATCTCAGTTGATAGCTTTATTTTTGGGGTGTTACTTTCCATGTGTTTCTTATGCCAATTGACTGCTGGCAGTAGGTTCTGCTTCTAATAACCAGCTGTGTTGTGGAGTTTCAGGAGATATTTTTGAGATTTTGGTGAGGAAGGGGGGTTGCTGTTGCATGCCATTAGTTTTTTTTTACTTGACTTGCATTTTTGAGTATGGCTGTATTATGTAATATACTTGTGGTTTTAACTTGGTACGTGTTTCTTGATGCTTCTTACAGATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTC</genome_strand>
        <mrna_strand>CCTCGTGCCGAATTCGGCACGAGGCCCTAACCGGAGGGCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGTGTGGAAGTTCGCCTTGGGCTTTCTAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAGTTGATTGAGAAA--CTGTAACTTGTAATGCTGCTGCTGTGTACTTGTCGTCTCCTATAAACCTTGTGTCTTGAGTATTTTTAATATCAGCTGGATTTGGAAACACGTAATTAATGTTGTTTTTACCTTTTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572003" ref_strand="+" ref_description="SGN-E572003 [31089]">
      <seq>gcactgtaaaactcacgcagcgcacaaaccctgccaacctgaaacccccatctttgattctattctatccccttaactaaaccctagatttcttctttcttccatcgccatcctctcccccatggattctcgccgtgttcctcgaactgtgagcgaccctaaggttcgtcaagtcggattcttcgctccacccgaccggtcccaatcgggtccattcatcccattttcctcttcccctcccgtttccgatctatccccttccggtaactctctttcccctgttatgatccctcctcctcgtcacctctccgtcgacgtatccctaccccgtcccggtaatctttatccggcacccttgtcccctctccgacgtgattctatcccagtcggaagctacaatccatctgaattctcttctcctactaccactaacttaccttatgatacctcctctcctggatggcatcgcagggggagttctggtaaatttgctacttctcttccctctgcaggatttgagttgcctgctgccaagcagaacagctttactgcctctagattgactacagtctccaacgtgaatgcgcctttgggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="42074" stop="43273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42374" g_stop="42973" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E572003" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42374" e_stop="42973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTGTAAAACTCACGCAGCGCACAAACCCTGCCAACCTGAAACCCCCATCTCTGATTCTATTCTATCCCCTTAACTAAACCCTAGATTTCTTCTTCTTCTTCCATCGCTACTCTCTCCTCCATGGATTCTCGCCGTGTTCCTCGAACTGTGAGCGACCCTAAGGTTCGTCAAGTCGGGTTCTTTGCTCCACCCGACCGATCCCAATCGGGTCCTTTCATCCCATTTTCCTCTTCCCCTCCTGTTTCCGATCTATCCCCTTCCGGTAACTCTCTTTCCCCTGTTATGATCCCTCCTCCTCGTCATCTCTCCGTCGACGTATCCCTACCCCGTCCCGCTAATCTTCATCCGGCACCCTTGTCCCCTCTACGACATGATTCTATCCCCGTCGGAAGCTACAATCCATCTGAATTCACTTCTCCTACTACCACTAACTTAGCTGATGATAACTCCTCTCCTGGCTGGCATCGCAGGGGCAGTTCTGGTAAATTTGCTACTTCTCTTCCCTCTGCAGGATTTGAGCTGCCTGCTGCCAAGCAGAACAGCTTTACTGCCTCCAGATTGACTACAGTCTCCAACGTGAATGCGACTTTGGGATTA</genome_strand>
        <mrna_strand>GCACTGTAAAACTCACGCAGCGCACAAACCCTGCCAACCTGAAACCCCCATCTTTGATTCTATTCTATCCCCTTAACTAAACCCTAGATTTCTTC-T-TTCTTCCATCGCCATCCTCTCCCCCATGGATTCTCGCCGTGTTCCTCGAACTGTGAGCGACCCTAAGGTTCGTCAAGTCGGATTCTTCGCTCCACCCGACCGGTCCCAATCGGGTCCATTCATCCCATTTTCCTCTTCCCCTCCCGTTTCCGATCTATCCCCTTCCGGTAACTCTCTTTCCCCTGTTATGATCCCTCCTCCTCGTCACCTCTCCGTCGACGTATCCCTACCCCGTCCCGGTAATCTTTATCCGGCACCCTTGTCCCCTCTCCGACGTGATTCTATCCCAGTCGGAAGCTACAATCCATCTGAATTCTCTTCTCCTACTACCACTAACTTACCTTATGATACCTCCTCTCCTGGATGGCATCGCAGGGGGAGTTCTGGTAAATTTGCTACTTCTCTTCCCTCTGCAGGATTTGAGTTGCCTGCTGCCAAGCAGAACAGCTTTACTGCCTCTAGATTGACTACAGTCTCCAACGTGAATGCGCCTTTGGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600821" ref_strand="+" ref_description="SGN-E600821 [53841]">
      <seq>aagaagcgctcagtagtgaagcaaactgaagccaaaaacagggttgaactttttaggcatttgcctcagtatgaacatggaacaagacttcccgagcttgaatcaaaattcttccagctagatccagttcatcctgctgtttttaaggttggacttagatatttggctggagatatttctggtgggaatgcccgctgtattgctatgcttcaagctttccaagagtccatcaaagactactcaactcccccggagaaagttcttataagagacttgactgcaaaagttaattgttatgtttcatttttgatcgagtgcaggcccctctcaatcagcatggggaatgctattaggttccttaaaactaggattgcgaaattgcctttgactttgtcagagtcagaagctaaaaccactcttatgacagatattgatcacttcataagtgaaaagataatacttgcagacgaggtgatagtcaagcatgcagtaactaaaataagggatggtgacgttcttctcacttatggatcctcctctgctgttgaaatgattctgttacatgctcatgagcttggcaaggatttccgtgtcgtagtagttgactcacgtccaaagcttgaagggagattactacttcgtcggttggtggggaacggtgttaacgtgtacatacactcatataaatgccatttcttatatcatgcatgaagttacaagagtactttttgggtgcttcatcagttatgtccaatggaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="44603" stop="46329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44903" g_stop="45049" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45050" i_stop="45416" i_length="367">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45417" g_stop="46029" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="762" r_length="615" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E600821" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44903" e_stop="45049"/>
          <exon e_start="45417" e_stop="46029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCGCTCAGTAGTGAAGCAAATTGAAGCCAAAAACAGGGTTGAACTTTTTAGGCATTTGCCTCAGTATGAACATGGAACAAGACTTCCCGAGCTTGAATCAAAGTTCTTCCAGCTAGATCCAGTTCATCCTGCTGTTTTTAAGGTATACCCTGAACTTATTATTTTTCTTGTTCGATCTATTTTTTTTTTCTAATTTGGGTTTGGATGAAGGTGTTTTGACTCATTATTGACTTAATGTAAACTGTAGTCCCCCCCCCCCCCCCCCCAATCCTATCCACCCCATAAAACACACACAAAAGAAGGGGGAGTCATGATCAGTTATGGACTTTGATCATCTTTGTTAAATCTGGAAAATGTAATTAGAACGGTGTAGCTCCAGGACTCCTGAAGAATCAAGGAGAGCTTCTCTCTAATTTGCTACAAGGGTATATGGGTGACTAGGAGCTAGTTTCCTGCTAGTACTTCAAAAATTCTTGCATTGAGATCTTGTATTTTCTACTTGGTATTAGGTTGGACTTAGATATTTGGCTGGAGATATATCTGGTGGTAATGCCCGCTGTATTGCTATGCTTCAAGCTTTCCAAGAGTCCATCAAAGACTACTCAACTCCCGCGGAGAAAGCTCTTATAAGAGACTTGACTGCAAAAGTTAATTGTTATGTTTCATTTTTGATCGAGTGCAGGCCCCTCTCAATCAGCATGGGGAATGCTATTAGGTTCCTTAAAACTAGAATTGCGAAATTGCCTTTGACTTTGTCAGAGTCAGAAGCTAAAACCACTCTTGTGACAGATATTGATCACTTCATAAGTGAAAAGATAATACTTGCAGACAAGGTGATAGTCAAGCATGCGGTAACTAAAATAAGTGATGGTGACGTTCTTCTCACTTATGGATCCTCCTCTGCTGTTGAAATGATTCTGTTACATGCGCATGAGCTTGGCAAGGATTTCCGTGTCATAGTAGTTGACTCACGTCCAAAGCTTGAAGGGAGATTACTACTTCGTCGGTTGGTGGGGAAGGGTGTTAA-GTGTACATACACTCATATAAATGCCATTTCTTATATCATGCATGAAGTTACAAGAGTAC-TTTTGGGTGCTTCATCAGTTTTGTCCAATGGAACTG</genome_strand>
        <mrna_strand>AAGAAGCGCTCAGTAGTGAAGCAAACTGAAGCCAAAAACAGGGTTGAACTTTTTAGGCATTTGCCTCAGTATGAACATGGAACAAGACTTCCCGAGCTTGAATCAAAATTCTTCCAGCTAGATCCAGTTCATCCTGCTGTTTTTAAG...............................................................................................................................................................................................................................................................................................................................................................................GTTGGACTTAGATATTTGGCTGGAGATATTTCTGGTGGGAATGCCCGCTGTATTGCTATGCTTCAAGCTTTCCAAGAGTCCATCAAAGACTACTCAACTCCCCCGGAGAAAGTTCTTATAAGAGACTTGACTGCAAAAGTTAATTGTTATGTTTCATTTTTGATCGAGTGCAGGCCCCTCTCAATCAGCATGGGGAATGCTATTAGGTTCCTTAAAACTAGGATTGCGAAATTGCCTTTGACTTTGTCAGAGTCAGAAGCTAAAACCACTCTTATGACAGATATTGATCACTTCATAAGTGAAAAGATAATACTTGCAGACGAGGTGATAGTCAAGCATGCAGTAACTAAAATAAGGGATGGTGACGTTCTTCTCACTTATGGATCCTCCTCTGCTGTTGAAATGATTCTGTTACATGCTCATGAGCTTGGCAAGGATTTCCGTGTCGTAGTAGTTGACTCACGTCCAAAGCTTGAAGGGAGATTACTACTTCGTCGGTTGGTGGGGAACGGTGTTAACGTGTACATACACTCATATAAATGCCATTTCTTATATCATGCATGAAGTTACAAGAGTACTTTTTGGGTGCTTCATCAGTTATGTCCAATGGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230545" ref_strand="+" ref_description="SGN-E230545 [cLEL-35-H17](-)">
      <seq>tcttgtaacttcatgcatgatataagaaatggcatttatatgagtgtatgtacacttaanccacccttcccaccaaccgacgaagtagtaatctcccttcaagctttggacgtgagtcaactactatgacacggaaatccttgccaagctcatgcgcatgtaacagaatcatttcaacagcagaggaggatccataagtgagaagaacgtcaccatcacttattttagttaccgcatgcttgactatcaccttgtctgcaagtattatcttttcacttatgaagtgatcaatatctgtcacaagagtggttttaacatctgactctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="46289" stop="45361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45989" g_stop="45661" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E230545" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45989" e_stop="45661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTAACTTCATGCATGATATAAGAAATGGCATTTATATGAGTGTATGTACACTTAACAC-CCTTCCCCACCAACCGACGAAGTAGTAATCTCCCTTCAAGCTTTGGACGTGAGTCAACTACTATGACACGGAAATCCTTGCCAAGCTCATGCGCATGTAACAGAATCATTTCAACAGCAGAGGAGGATCCATAAGTGAGAAGAACGTCACCATCACTTATTTTAGTTACCGCATGCTTGACTATCACCTTGTCTGCAAGTATTATCTTTTCACTTATGAAGTGATCAATATCTGTCACAAGAGTGGTTTTAGCTTCTGACTCTGACA</genome_strand>
        <mrna_strand>TCTTGTAACTTCATGCATGATATAAGAAATGGCATTTATATGAGTGTATGTACACTTAANCCACCCTTCCCACCAACCGACGAAGTAGTAATCTCCCTTCAAGCTTTGGACGTGAGTCAACTACTATGACACGGAAATCCTTGCCAAGCTCATGCGCATGTAACAGAATCATTTCAACAGCAGAGGAGGATCCATAAGTGAGAAGAACGTCACCATCACTTATTTTAGTTACCGCATGCTTGACTATCACCTTGTCTGCAAGTATTATCTTTTCACTTATGAAGTGATCAATATCTGTCACAAGAGTGGTTTTAACATCTGACTCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338596" ref_strand="+" ref_description="SGN-E338596 [cTOE-15-I6]">
      <seq>gagaatgtaagagctgagcttgaaaagcaacagatcaagattagtgagggtacagaacaacttaaaataactgaagatgagagaatggaacattctcgcctacaatcagaactgaagcaggagatagttaagtgtagactcctccgagaagatctattgaaggaagctgaagatttgaagcaggaaaaagaaagatttgagagagaatgggaagaactagatgagaaaagatctgagatcaagatagacttgcaggaacttaatgaacggagagagaatttagaaaaactgaagcgcagtgaagaggaaaggataagcaaggagaagctggaaacagacaattatgtccagatggagttggaagcccttagagtggcaagagaaacatttgaagctaccatggatcatgagaagtcaatattagccgaggaaactcgaagtgagaaaagccagatgcttcatgcttatgaacagcagaaaagggaacttgaaagtgatatgcagaggaagcaggaggaaatggagtctgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="52218" stop="53350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52518" g_stop="53050" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E338596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52518" e_stop="53050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGTAAGAGCTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGGGTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACATTCTCGCCTACAATCAGAACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGATCTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAAGAACTAGATGAGAAAAGATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGAGAGAATTTAGAAAAACTGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGACAATTATGTCCAGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAAGCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAGATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTGCACT</genome_strand>
        <mrna_strand>GAGAATGTAAGAGCTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGGGTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACATTCTCGCCTACAATCAGAACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGATCTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAAGAACTAGATGAGAAAAGATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGAGAGAATTTAGAAAAACTGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGACAATTATGTCCAGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAAGCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAGATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561128" ref_strand="+" ref_description="SGN-E561128 [17072]">
      <seq>ctgagcttgaaaagcaacagatcaagattagtgaggatacagaacaacttanaataactgaagatgagagaatggaatatgctcgcctacaatcggaactgaagcaggagatagacaagtgtagactcctccaagaagatctattgaaggaagctgaagatttgaagcaggaaaaagaaaggtttgagagagaatgggaagaactagatgagaaaagatctgagatcaagataaacttgcaggaacttaatgaacagagagcgaatttcgaaaaactgaagcgcactgaagaggaaaggataagcaaggagaagctggaaacagaaaattatgtccagagggagttggaagcccttagagtggcaagagaagcatctgaagctaccatggatcatgagaagtcaatattagccgaggaaactcaaagtgcgaaaagccaaatgcttcatgcttatgaacagcagaaaagggaacttgaaagtgatatgcagaggaagcaggaggaaatggagtctgcactgcatgtacaagggaaactctttgaggaagagaggcagaaggagctcagcaatattgaatatttaaaggaaatcacnccatagagaaatggaagagatgaaattagaaagagtcagtctggagaaagaaaaacaggaaaatttctgctaacaagggggattcttgaagtacaaacagttggaaatgaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="52231" stop="53538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52531" g_stop="53238" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E561128" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52531" e_stop="53238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGGGTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACATTCTCGCCTACAATCAGAACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGATCTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAAGAACTAGATGAGAAAAGATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGAGAGAATTTAGAAAAACTGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGACAATTATGTCCAGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAAGCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAGATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTGCACTGCGTGTACAAGAGAAACTCTTTGAGGAAGAGAGCCAGAAGGAGCTCAGCAATATTGAATATATAAAGGAAATCAC-CCATAGAGAGATGGAAGAGATGAAATTAGAAAGAGTCAGTCTTGAGAAAGAAAAACAGG-AAATTTCTGCTAACAA-GGGGATTCTTGAAGTAC-AACAGTTGGAAATGAAAAAGG</genome_strand>
        <mrna_strand>CTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGGATACAGAACAACTTANAATAACTGAAGATGAGAGAATGGAATATGCTCGCCTACAATCGGAACTGAAGCAGGAGATAGACAAGTGTAGACTCCTCCAAGAAGATCTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGGTTTGAGAGAGAATGGGAAGAACTAGATGAGAAAAGATCTGAGATCAAGATAAACTTGCAGGAACTTAATGAACAGAGAGCGAATTTCGAAAAACTGAAGCGCACTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGAAAATTATGTCCAGAGGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAGCATCTGAAGCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCAAAGTGCGAAAAGCCAAATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTGCACTGCATGTACAAGGGAAACTCTTTGAGGAAGAGAGGCAGAAGGAGCTCAGCAATATTGAATATTTAAAGGAAATCACNCCATAGAGAAATGGAAGAGATGAAATTAGAAAGAGTCAGTCTGGAGAAAGAAAAACAGGAAAATTTCTGCTAACAAGGGGGATTCTTGAAGTACAAACAGTTGGAAATGAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216592" ref_strand="+" ref_description="SGN-E216592 [cLEL-1-O9](-)">
      <seq>aatgtttctcttgccactctaagggcttccaactccatctggacataattgtctgtttccagcttctccttgcttatcctttcctcttcactgcgcttcagtttttctaaattctctctccgttcattaagttcctgcaagtctatcttgatctcagatcttttctcatctagttcttcccattctctctcaaatctttctttttcctgcttcaaatcttcagcttccttcaatagatcttctcggaggagtctgcacttaactatctcctgcttcagttctgattgtaggcgagaatgttccattctctcatcttcagtaattttcagttgttctgtaccctcactagtcttgatctgagaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="53206" stop="52248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52906" g_stop="52539" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E216592" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52906" e_stop="52539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTTCTCTTGCCACTCTAAGGGCTTCCAACTCCATCTGGACATAATTGTCTGTTTCCAGCTTCTCCTTGCTTATCCTTTCCTCTTCACTGCGCTTCAGTTTTTCTAAATTCTCTCTCCGTTCATTAAGTTCCTGCAAGTCTATCTTGATCTCAGATCTTTTCTCATCTAGTTCTTCCCATTCTCTCTCAAATCTTTCTTTTTCCTGCTTCAAATCTTCAGCTTCCTTCAATAGATCTTCTCGGAGGAGTCTACACTTAACTATCTCCTGCTTCAGTTCTGATTGTAGGCGAGAATGTTCCATTCTCTCATCTTCAGTTATTTTAAGTTGTTCTGTACCCTCACTAATCTTGATCTGTTGCTTTTC</genome_strand>
        <mrna_strand>AATGTTTCTCTTGCCACTCTAAGGGCTTCCAACTCCATCTGGACATAATTGTCTGTTTCCAGCTTCTCCTTGCTTATCCTTTCCTCTTCACTGCGCTTCAGTTTTTCTAAATTCTCTCTCCGTTCATTAAGTTCCTGCAAGTCTATCTTGATCTCAGATCTTTTCTCATCTAGTTCTTCCCATTCTCTCTCAAATCTTTCTTTTTCCTGCTTCAAATCTTCAGCTTCCTTCAATAGATCTTCTCGGAGGAGTCTGCACTTAACTATCTCCTGCTTCAGTTCTGATTGTAGGCGAGAATGTTCCATTCTCTCATCTTCAGTAATTTTCAGTTGTTCTGTACCCTCACTAGTCTTGATCTGAGAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243482" ref_strand="+" ref_description="SGN-E243482 [cLED-34-J15]">
      <seq>tctgctggaaccatgtcctggtttcgaaagtgtacatccaagattctcaaattctcaccaagcaaaaacattggaaatgttgcttctgattgtctggttgatgaatcttctctgtcacagaagtgtgcaggcatatcaccaaataaacaatcaaaggaaggaaatccaatggatctgtccatttccatgaatgttcttgatgatcagagggttcaacaggatgatggtgttagagaggtcaaagtaggccaagacaatgtagaagactctcatcattcggacatgaaagctggacagcgcagaactgtcaagaaagggcgtggtagaactagtaaaacagaaaaagctgcaaatatgacagttcttgggaaaatttctaaagagggtgagaatatcaccaatggaagtttggagacttcagttaatatgaacgaggagagccagagaggatctggtcttttgggtggagcaccgagaaattccagaaagcgtagtcatacatcacagggaacagcttgtgagattgatggcaataatagtgaaggacagtcggatagtgtagccagcattcgtgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="53235" stop="54412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53535" g_stop="54112" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E243482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53535" e_stop="54112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGGAACCATGTCCTGGTTTCGAAAGTGTACATCCAAGATTCTCAAATTCTCACCAAGCAAAAACATTGGAAATGTTGCTTCTGATTGTCTGGTTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAGGAAGGAAATCCAATGGATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGTGTTAGAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCATTCGGACATGAAAGCTGGACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAAACAGAAAAAGCTGCAAATATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGGAGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCACCGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAA</genome_strand>
        <mrna_strand>TCTGCTGGAACCATGTCCTGGTTTCGAAAGTGTACATCCAAGATTCTCAAATTCTCACCAAGCAAAAACATTGGAAATGTTGCTTCTGATTGTCTGGTTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAGGAAGGAAATCCAATGGATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGTGTTAGAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCATTCGGACATGAAAGCTGGACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAAACAGAAAAAGCTGCAAATATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGGAGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCACCGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559731" ref_strand="+" ref_description="SGN-E559731 [19274]">
      <seq>tgtctgattgatgaatcttctctgtcacagaagtgtgcaggcatatcaccaaataaacaatcaaacaaaggaaatccaatgaatctgtctgtttccatgaatgttcttgatgatcagagggttcaacaggatgatggcgttagagaggtcaaagttggccaagacaatgtaaagactctcatcattcagacatgaaagctggccagcgcagaactgtcaagaaagggcgtggtagaagtagtaaaacagaaaaagctgcaaatacaaggacatttcttggaaaaattcctaaagagggtgagaatatcaccaatggaagtttggagacttcagataatatgaacgaggagagccagagaggatctggtcttttgggtggagcaccgagaaatgccagaaagcgtagtcatacatcacagggaacagctagtgagattgatggcaataatagtgaaggacagtcggatagtgtaccagcattcgcgggaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="53325" stop="54415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53625" g_stop="54115" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E559731" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53625" e_stop="54115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTGGTTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAGGAAGGAAATCCAATGGATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGTGTTAGAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCATTCGGACATGAAAGCTGGACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAAACAGAAAAAGCTGCAAAT---ATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGGAGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCACCGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAG</genome_strand>
        <mrna_strand>TGTCTGATTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAACAAAGGAAATCCAATGAATCTGTCTGTTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGCGTTAGAGAGGTCAAAGTTGGCCAAGACAATGTA-AAGACTCTCATCATTCAGACATGAAAGCTGGCCAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAAGTAGTAAAACAGAAAAAGCTGCAAATACAAGGACATTTCTTGGAAAAATTCCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGGAGACTTCAGATAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCACCGAGAAATGCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTAGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTA-CCAGCATTCGCGGGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235630" ref_strand="+" ref_description="SGN-E235630 [cLED-15-K5]">
      <seq>cgagaaattccagaaagcgtagtcatacatcacagggaacagcttgtgagattgatggcaataatagtgaaggacagtcggatagtgtagccagcattcgtgggaaaaggaggcaacaggctgcccctagtgtgcaggctcatgccgaaagaagatacaatctgcgccgacctagaagtgctgcaccagcggcatcctatggatctttgccagagccagtcgtaaaatctcaggaagagaatcagaactctaaagcttccctgcaaactcctcaggtgaacaacagtgaagacgtcattgatcatcccacggtatctgagagccctttcaatgatgcagtggacaatctggaaagcagtgctaacaaggtaaatgagctgttggatgatacaggtttgagtgaagaggtgaatgtaacaccaaaacgaccttcagcatccagcgatgaggaagggtctgatgacagtgatgatgaggaggaagaaattgaacatcccggtgaagtgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="53707" stop="55447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54007" g_stop="54184" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54185" i_stop="54456" i_length="272">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54457" g_stop="54604" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="326" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54605" i_stop="54963" i_length="359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54964" g_stop="55147" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="510" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E235630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54007" e_stop="54184"/>
          <exon e_start="54457" e_stop="54604"/>
          <exon e_start="54964" e_stop="55147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAGGTACGTTGTTTGAATGCCTTCTTAATAATGCATAGACTTGTTCTGCCCTCACACCTAAAAAGATTTGCAATGTGAAGTAGGACCTTAGGATATTGCAGAACTTTTCTTAAGAATCACATGGAAAATTTTCATCCCTCCACCCCCCTCGAAATATATATATATATATATATATGTTCACCAAGCATTATGAGCTGCTGTTATTCACATGCTCAAGAGACTATTTTATTTAGGATAATTCATGGTATTTAACTTGCACATTCTTTTGTTCTCAGTGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCTGTTAGTACTCTTTCCCATCTGTTATACATAATTTCACATATGTTTCAGAAGTTATTTATGCTTGAGCTACTTTTGTGTGGCATGCACATATCTTGTTCTCTTTTATTCCTTGGTACACCTCTTTCCACTGGATTATATAACAGTGTTCTTTTAAAAAGTTAAAAAATATTATTTACAAAAGCAGCATTAAGTGCTGCAACCCTCTGCGGAGTGTGAGCAAATTCTTACTACAATTTCATGTTTGAAAAACTAGTGAAGCAGTATTAGGTGCTGCTGTTATAGACTGCTAGTTTCATCAATGTGATAAATGTGTTTTGTAACCAGCTGTTAATTAACATTTATTATATTTCTCTTGCCAGTTCAATGATGCAGTGGACAATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGGAAGAAATTGAACATCCCGGTGAAGTGTCTG</genome_strand>
        <mrna_strand>CGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAG................................................................................................................................................................................................................................................................................TGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCT.......................................................................................................................................................................................................................................................................................................................................................................TTCAATGATGCAGTGGACAATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGGAAGAAATTGAACATCCCGGTGAAGTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242157" ref_strand="+" ref_description="SGN-E242157 [cLED-37-L12]">
      <seq>cgagaaattccagaaagcgtagtcatacatcacagggaacagcttgtgagattgatggcaataatagtgaaggacagtcggatagtgtagccagcattcgtgggaaaaggaggcaacaggctgcccctagtgtgcaggctcatgccgaaagaagatacaatctgcgccgacctagaagtgctgcaccagcggcatcctatggatctttgccagagccagtcgtaaaatctcaggaagagaatcagaactctaaagcttccctgcaaactcctcaggtgaacaacagtgaagacgtcattgatcatcccacggtatctgagagccctttcaatgatgcagtggacaatctggaaagcagtgctaacaaggtaaatgagctgttggatgatacaggtttgagtgaagaggtgaatgtaacaccaaaacgaccttcagcatccagcgatgaggaagggtctgatgacagtgatgatgaggaggaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="53707" stop="55426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54007" g_stop="54184" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54185" i_stop="54456" i_length="272">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54457" g_stop="54604" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="326" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54605" i_stop="54963" i_length="359">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54964" g_stop="55126" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="489" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E242157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54007" e_stop="54184"/>
          <exon e_start="54457" e_stop="54604"/>
          <exon e_start="54964" e_stop="55126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAGGTACGTTGTTTGAATGCCTTCTTAATAATGCATAGACTTGTTCTGCCCTCACACCTAAAAAGATTTGCAATGTGAAGTAGGACCTTAGGATATTGCAGAACTTTTCTTAAGAATCACATGGAAAATTTTCATCCCTCCACCCCCCTCGAAATATATATATATATATATATATGTTCACCAAGCATTATGAGCTGCTGTTATTCACATGCTCAAGAGACTATTTTATTTAGGATAATTCATGGTATTTAACTTGCACATTCTTTTGTTCTCAGTGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCTGTTAGTACTCTTTCCCATCTGTTATACATAATTTCACATATGTTTCAGAAGTTATTTATGCTTGAGCTACTTTTGTGTGGCATGCACATATCTTGTTCTCTTTTATTCCTTGGTACACCTCTTTCCACTGGATTATATAACAGTGTTCTTTTAAAAAGTTAAAAAATATTATTTACAAAAGCAGCATTAAGTGCTGCAACCCTCTGCGGAGTGTGAGCAAATTCTTACTACAATTTCATGTTTGAAAAACTAGTGAAGCAGTATTAGGTGCTGCTGTTATAGACTGCTAGTTTCATCAATGTGATAAATGTGTTTTGTAACCAGCTGTTAATTAACATTTATTATATTTCTCTTGCCAGTTCAATGATGCAGTGGACAATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGGAAGAAATTG</genome_strand>
        <mrna_strand>CGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAG................................................................................................................................................................................................................................................................................TGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCT.......................................................................................................................................................................................................................................................................................................................................................................TTCAATGATGCAGTGGACAATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGGAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216414" ref_strand="+" ref_description="SGN-E216414 [cLEL-1-A15](-)">
      <seq>ggtagctctaggcatcttgattggtattttgtttcttttgctacttgtagagtaatttgatgattttagagtaatgtgcagtagtgtgtatgcttaaagtttagtcaacagaaatcagtttagggtcggcaatttgattgttcatataatgttggtccaactccgggtgcacgcatattggtttaacaatttttagtatccatatgcttgctgtccctaagttgactattgcagctgtaacactagagtgtgcttctctcctgtatcgacactattgtaagtttacccactaaataggtggataaccctctgcaatccatttgattttgatccttcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="54923" stop="55858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55223" g_stop="55565" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="357"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E216414" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55223" e_stop="55565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCTCTAGGCATCTTGATTGGTATTTTGTTTCTTTTGCTACTTGTAGAGTAATTTGATGATTTTAGAGTAATGTGCAGTAGTGTGTATGCTTAAAGTTTAGTCAACAGAAATCAGTTTAGGGTCGGCAATTTGATTGTTCATATAATGTTGGTCCAACTCCGGGTGCACGCATATTGGTTTAACAATTTTTAGTATCCATATGCTTGCTGTCCCTAAGTTGACTATTGCAGCTGTAACACTAGAGTGTGCTTCTCTCCTGTATCTACACTATTGTAAGTTTAACCACTAAATAGGTGGATAATATTCTGCAATCCATTTGATTTTGATCTTTCCTAGTAG</genome_strand>
        <mrna_strand>GGTAGCTCTAGGCATCTTGATTGGTATTTTGTTTCTTTTGCTACTTGTAGAGTAATTTGATGATTTTAGAGTAATGTGCAGTAGTGTGTATGCTTAAAGTTTAGTCAACAGAAATCAGTTTAGGGTCGGCAATTTGATTGTTCATATAATGTTGGTCCAACTCCGGGTGCACGCATATTGGTTTAACAATTTTTAGTATCCATATGCTTGCTGTCCCTAAGTTGACTATTGCAGCTGTAACACTAGAGTGTGCTTCTCTCCTGTATCGACACTATTGTAAGTTTACCCACTAAATAGGTGGATAACCCTCTGCAATCCATTTGATTTTGATCCTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="69291" stop="70537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69591" g_stop="70227" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69591" e_stop="70227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCCCCAAACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTTTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCTCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAA-TTGTCGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGTAGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCA-GGA--AGTTTAGGTTTTACTTTTTTTTTTTCATTTTTTTACTTTAAAATAA-TTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACGTCCTCTATTTTTTGTTTATTCTCGAAAAAACGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGTCCGCATATGACTTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGGAGGGG-GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAGGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371668" ref_strand="+" ref_description="SGN-E371668 [TUS-29-I14](-)">
      <seq>ttcatttggcgttgtgcttttggagcttattacggggcggaaacctgttgaccagtctcagcccttaggtgatgaaagcctggttgaatgggctcgacctttgcttgctcaagcacttgagactgaaaattttgaagacgtagtagatcctaggcttggaaacaactttgttgcgggtgagatgttccggatgattgaagcagctgcagcttgcgtgcgtcattcaggctctaagaggccacggatgagtcaggtggttagagctctagattccatggatgaattgtcagatctgtccaatggagtgaaacctggacaaagtggaatttttgagtcaagggaacaatctgcacagataagaatgtttcaaaagatggcatttggaagtcaagagtacagttcagatttcttcaattattcccaaggcagctataagagttgagttctcaatggctcattaccaaaataattgcccatgaaaagcgtttcttcacagagagatctgacttgtaattaacattgtaaatcactgtgctattctttctttttttttcggctagtgttgaaatatgcattcttttttactcctttatggtgtcttcacacgacaaacaattggttttgtagcattctgaaatcaacattctattcatacaatgtagataaaaagttaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="76939" stop="75042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76639" g_stop="76549" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76008" g_stop="75847" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="253" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75846" i_stop="75767" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75766" g_stop="75340" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="680" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E371668" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76639" e_stop="76549"/>
          <exon e_start="76008" e_stop="75847"/>
          <exon e_start="75766" e_stop="75340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGGGTAAGTTCAATTTTTTTTGTCGCTTTTAATTGCCTGTAATGATTGATGTTGATGCTTAATCAGAGCTTGTGGCCTAGGCTATGCTGTGTCCTAATCTATATGGGAGAACTGGGTTTCTAGGATGTTTATTTCTTTTGAGGAACAAGAAAGAGGTTGGTTTCCAAATTTTTCTTTGAAGGCTCTGGGCCTTATGGATGGTAATAGTGTATGTTGTTGTTGGCCAGAATATCTGCCGCTAAATGTAACGGCCAGAGTTCCTTACATATTTTAAGGGACTATTTTAAACCTACCCCCAATGTAATGGACCATTTTTGTCATTTTCCGTGAAATGTAGTAACCCAAGCATTCTTATTCATGTACCCCTGAATATTTACATTTAACAGAATGACAGGAATGGGTACGAGATACTGCTCTTAACCTTATCTGACTATTAGCATTGCTATTCACACTAGTGATGGAACCGTTTAAAGTTTTCCATGTTTCTGAAGTCATCCAACTAGTACTTCCATTAAATTGAAGCTGAGAGATATTATCCTGTAGGCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAACTTTGTTGCGGGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCTTGCGTGCGTCATTCAGGCTCTAAGAGGCCACGGATGAGTCAGGTAGTTAGAGTGCTATTGCAGGTCAGGCAGTTCATTATGATTCATTTCGTTGCAGTCCTGATTTTTTCCGCCCATTTCAGGTGGTTAGAGCTCTAGATTCCATGGATGAATTGTCAGATCTGTCCAATGGAGTGAAACCTGGACAAAGTGGAATTTTTGAGTCAAGGGAACAATCTGCACAGATAAGAATGTTTCAAAAGATGGCATTTGGAAGTCAAGAGTACAGTTCAGATTTCTTCAATTATTCCCAAGGCAGCTATAAGAGTTGAGTTCTCAATGGCTCATTACCAAAATAATTGCCCATGAAAAGCGTTTCTTCACAGAGAGATCTGACTTGTAATTAACATTGTAAATCACTGTGCTATTCTTTCTTTTTTTTTCGGCTAGTGTTGAAATATGCATTCTTTTTTACTCCTTTATGGTGTCTTCACACGACAAACAATTGGTTTTGTAGCATTCTGAAATCAACATTCTATTCATACAATGTAGATAAAATGTTAATCAAGG</genome_strand>
        <mrna_strand>TTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAACTTTGTTGCGGGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCTTGCGTGCGTCATTCAGGCTCTAAGAGGCCACGGATGAGTCAG................................................................................GTGGTTAGAGCTCTAGATTCCATGGATGAATTGTCAGATCTGTCCAATGGAGTGAAACCTGGACAAAGTGGAATTTTTGAGTCAAGGGAACAATCTGCACAGATAAGAATGTTTCAAAAGATGGCATTTGGAAGTCAAGAGTACAGTTCAGATTTCTTCAATTATTCCCAAGGCAGCTATAAGAGTTGAGTTCTCAATGGCTCATTACCAAAATAATTGCCCATGAAAAGCGTTTCTTCACAGAGAGATCTGACTTGTAATTAACATTGTAAATCACTGTGCTATTCTTTCTTTTTTTTTCGGCTAGTGTTGAAATATGCATTCTTTTTTACTCCTTTATGGTGTCTTCACACGACAAACAATTGGTTTTGTAGCATTCTGAAATCAACATTCTATTCATACAATGTAGATAAAAAGTTAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470062" ref_strand="+" ref_description="SGN-E470062 [cSTB-16-H24]">
      <seq>cattatccatagggatatcaaaacatcaaacattctcttggatatcaattttgaggcacaggttgctgattttggccttgcaaggttagcaggtgatgccagtagtacacacgtgacaactcgtgtgatgggaacctttggatacttggcaccagagtatgcatctagtggaaaattaacagagaagtctgatgtttattcatatggcgttgtgcttttggagcttattacgggacggaaacctgttgaccagtctcaacccttaggtgatgaaagcctggttgaatgggctcgacctttgcttgctcaagcacttgagactgaaaattttgaagatgtagtagatcctaggcttggaaacaactttgttgcgggtgagatgttccggatgattgaagcagctgcagcttgcgttcgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="77845" stop="75577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77545" g_stop="77485" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77484" i_stop="77307" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77306" g_stop="77227" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="141" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77226" i_stop="76697" i_length="530">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76696" g_stop="76549" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="289" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76008" g_stop="75877" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="421" r_length="132" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E470062" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77545" e_stop="77485"/>
          <exon e_start="77306" e_stop="77227"/>
          <exon e_start="76696" e_stop="76549"/>
          <exon e_start="76008" e_stop="75877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAGGTATATGACAGTATATCCTACCTAAATTTATGTCTGTGACTTGGTGTTTGTCATTGTTTGTTGAACTTAGGCATCTGAACCAAAAAAATCTCATATTCCGTGCTTGTAATGGTGTATAGGAAATTATATGTGTTATGGCTTATAGTTTATGCAATTTGACTATGTTTCGTCCTTTCAGGTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGGGTAGGTCATACATGTGCTAAGTCTTAAATTAGAAGAAATCTTAGTTGGCCTCTTTCTGTTGCAATATCACATTATCTGTCAACATCATCAACACCATGGTCAGTTGCACCATAAATAATCTCCAAAAACTTTTATCCTAAAGCTGCTTTTCCTTCTAAAACTTTTATAGTATTACTTTTTGTCACTTCCATTTCACTTTGAACCTCAGGGGAGAGAGTAAATTGACCTTTATTTAACATATATTGATTCCTCACTTGTAAGAACAACCTTCAGTCGGTATCAGCCTCGAGTTGTGGTAACTTTGTACTCTTGTATGGGGGCAGGATTTGGTCTTCAGTCAAACAGTTGCTTTTATGCAACATCTCAAAACCATAACGTATATGTCAGTCACTTAATTTTCCAATAGCCCTTGTCATCCTACCCACATAAGTGGTTTAAACTGATATTAAATTATTTATCAAAATGACTAATTTTATAGTTGTATGGCATGCCCTTAGCTGATGACTTGACATTGATGTAAACGATTTCAGATACTTGGCACCAGAGTATGCATCAAGTGGAAAATTAACAGAGAAATCTGATGTTTATTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGGGTAAGTTCAATTTTTTTTGTCGCTTTTAATTGCCTGTAATGATTGATGTTGATGCTTAATCAGAGCTTGTGGCCTAGGCTATGCTGTGTCCTAATCTATATGGGAGAACTGGGTTTCTAGGATGTTTATTTCTTTTGAGGAACAAGAAAGAGGTTGGTTTCCAAATTTTTCTTTGAAGGCTCTGGGCCTTATGGATGGTAATAGTGTATGTTGTTGTTGGCCAGAATATCTGCCGCTAAATGTAACGGCCAGAGTTCCTTACATATTTTAAGGGACTATTTTAAACCTACCCCCAATGTAATGGACCATTTTTGTCATTTTCCGTGAAATGTAGTAACCCAAGCATTCTTATTCATGTACCCCTGAATATTTACATTTAACAGAATGACAGGAATGGGTACGAGATACTGCTCTTAACCTTATCTGACTATTAGCATTGCTATTCACACTAGTGATGGAACCGTTTAAAGTTTTCCATGTTTCTGAAGTCATCCAACTAGTACTTCCATTAAATTGAAGCTGAGAGATATTATCCTGTAGGCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAACTTTGTTGCGGGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCTTGCGTGCGTCAT</genome_strand>
        <mrna_strand>CATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAG..................................................................................................................................................................................GTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGGCACCAGAGTATGCATCTAGTGGAAAATTAACAGAGAAGTCTGATGTTTATTCATATGGCGTTGTGCTTTTGGAGCTTATTACGGGACGGAAACCTGTTGACCAGTCTCAACCCTTAGGTGATGAAAGCCTGGTTGAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGATGTAGTAGATCCTAGGCTTGGAAACAACTTTGTTGCGGGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCTTGCGTTCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560854" ref_strand="+" ref_description="SGN-E560854 [20574]">
      <seq>caaaggtgttccttaatgacggaagagaagtcgctgtcaaacagctgaaaagtggaagtggacaaggggagcgtgagttcagagcagaagttgagattatcagccgtgtgcaccatcgccatttggtttcacttgttggttactgtatctcagagcagcaaaggttacttgtctacgactatgtgccaaatgacacgcttgactatcaccttcatggtaaaggcatgccaactatggattgggctacccgagtaaaagtagctgctggtgcagcacgtggacttgcttatctgcatgaagactgtcatccccgcattatccatagggatatcaaaacatcaaacattctcttggatatcaattttgaggcacaggttgctgattttggccttgcaaggttagcaggtgatgccagtagtacacacgtgacaactcgtgtgatgggaacctttggatacttggcaccagagtatgcatctagtggaaaattaacagagaagtctgatgtttattcgtatggcgttgtgcttttggagcttattacgggacggaaacctgttgaccagtctcaacccttaggtgatgaaagcctggttgaatgggctcgacctttgcttgctcaagcacttgagactgaaaattttgaagatgtagtaatcctaacttggaaacaactttgtttgcgcggtgagatgttccggatgattgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="78826" stop="75600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78526" g_stop="78312" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78311" i_stop="78019" i_length="293">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78018" g_stop="77932" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="303" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77931" i_stop="77556" i_length="376">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77555" g_stop="77485" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="374" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77484" i_stop="77307" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77306" g_stop="77227" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="454" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77226" i_stop="76697" i_length="530">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76696" g_stop="76549" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="602" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76008" g_stop="75900" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="711" r_length="109" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E560854" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78526" e_stop="78312"/>
          <exon e_start="78018" e_stop="77932"/>
          <exon e_start="77555" e_stop="77485"/>
          <exon e_start="77306" e_stop="77227"/>
          <exon e_start="76696" e_stop="76549"/>
          <exon e_start="76008" e_stop="75900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTGTT-CTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAAAGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCATCTTCATGGTAAGACAGGTTTGAGATAAATGAACTAATGAATTGAAGTACTTGGATTACTGTAGTCCAGATTTTGTTCTCTATGTTGAATTCTCCAACTCCACAATTCCAAGATGAGTTGCATATTTTTCTTATCATGGCTGGTAATGACCATTATGACATGAATAGCTGCTAACAACGGCTACAACCAATTGGCCTTATACTGTGCCACATTTCTATGAACATAAGTGAAACTGAGAAGGATGTTTTCTAGTCTCAGATATGATGCTAACGTAACTTCTATTGGTGATTAAATACTGCAGGTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGCTGCTGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACTGTAATTTTCTTATTATGTTTATATTTACTCTTGTCCACATTAGTTAAACCTAGGGCTTCTGGAGACTTAATAAAAGGAATAATGGGGACAAAGTGGCTTAAAGACTGGTTGAATTTCTCCAAAGAAGCTCAGATGCAGTATCCAATGTTGTTTTCTTAGCATGTGTTTTCATCAATGATAAAACCATGACTTGTCAATGTAATTGGTAACTGCACTGTTTATTAATGAGAACTAATGCTAAAATGGGAAAATCTTTTCTGTTGTAATGTCGGCAAGCTGAATGGACTTTCTTAGGGAATAGAGCACATTTTAAATGTTTTGCAATTTTCCTTTACTGATTTATCCTCTGAAATTCTGCTAATTATGTTGTTCTCAGGTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAGGTATATGACAGTATATCCTACCTAAATTTATGTCTGTGACTTGGTGTTTGTCATTGTTTGTTGAACTTAGGCATCTGAACCAAAAAAATCTCATATTCCGTGCTTGTAATGGTGTATAGGAAATTATATGTGTTATGGCTTATAGTTTATGCAATTTGACTATGTTTCGTCCTTTCAGGTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGGGTAGGTCATACATGTGCTAAGTCTTAAATTAGAAGAAATCTTAGTTGGCCTCTTTCTGTTGCAATATCACATTATCTGTCAACATCATCAACACCATGGTCAGTTGCACCATAAATAATCTCCAAAAACTTTTATCCTAAAGCTGCTTTTCCTTCTAAAACTTTTATAGTATTACTTTTTGTCACTTCCATTTCACTTTGAACCTCAGGGGAGAGAGTAAATTGACCTTTATTTAACATATATTGATTCCTCACTTGTAAGAACAACCTTCAGTCGGTATCAGCCTCGAGTTGTGGTAACTTTGTACTCTTGTATGGGGGCAGGATTTGGTCTTCAGTCAAACAGTTGCTTTTATGCAACATCTCAAAACCATAACGTATATGTCAGTCACTTAATTTTCCAATAGCCCTTGTCATCCTACCCACATAAGTGGTTTAAACTGATATTAAATTATTTATCAAAATGACTAATTTTATAGTTGTATGGCATGCCCTTAGCTGATGACTTGACATTGATGTAAACGATTTCAGATACTTGGCACCAGAGTATGCATCAAGTGGAAAATTAACAGAGAAATCTGATGTTTATTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGGGTAAGTTCAATTTTTTTTGTCGCTTTTAATTGCCTGTAATGATTGATGTTGATGCTTAATCAGAGCTTGTGGCCTAGGCTATGCTGTGTCCTAATCTATATGGGAGAACTGGGTTTCTAGGATGTTTATTTCTTTTGAGGAACAAGAAAGAGGTTGGTTTCCAAATTTTTCTTTGAAGGCTCTGGGCCTTATGGATGGTAATAGTGTATGTTGTTGTTGGCCAGAATATCTGCCGCTAAATGTAACGGCCAGAGTTCCTTACATATTTTAAGGGACTATTTTAAACCTACCCCCAATGTAATGGACCATTTTTGTCATTTTCCGTGAAATGTAGTAACCCAAGCATTCTTATTCATGTACCCCTGAATATTTACATTTAACAGAATGACAGGAATGGGTACGAGATACTGCTCTTAACCTTATCTGACTATTAGCATTGCTATTCACACTAGTGATGGAACCGTTTAAAGTTTTCCATGTTTCTGAAGTCATCCAACTAGTACTTCCATTAAATTGAAGCTGAGAGATATTATCCTGTAGGCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAACTTTG-TTGCG-GGTGAGATGTTCCGGATGATTGAAG</genome_strand>
        <mrna_strand>CAAAGGTGTTCCTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAAAGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCACCTTCATG.....................................................................................................................................................................................................................................................................................................GTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGCTGCTGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................GTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAG..................................................................................................................................................................................GTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGGCACCAGAGTATGCATCTAGTGGAAAATTAACAGAGAAGTCTGATGTTTATTCGTATGGCGTTGTGCTTTTGGAGCTTATTACGGGACGGAAACCTGTTGACCAGTCTCAACCCTTAGGTGATGAAAGCCTGGTTGAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGATGTAGTA-ATCCTA-ACTTGGAAACAACTTTGTTTGCGCGGTGAGATGTTCCGGATGATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460229" ref_strand="+" ref_description="SGN-E460229 [cPRO-30-G20]">
      <seq>cggaagagaagtcgctgtcaaacagctgaaaagtggaagcggacaaggggagcgtgagttcagagcagaagttgagattatcagccgtgtgcaccatcgccatttggtttcacttgttggttactgtatctcagagcagcaaaggttacttgtctacgactatgtgccaaatgacacacttgactatcaccttcatggtaaaggcatgcaaactatggattgggctacccgagtaaaagtagctgctggtgcagcacgtggacttgcttatctgcatgaagactgtcatccccgcattatccatagggatatcaaaacatcaaacattctcttggatatcaattttgaggcacaggttgctgattttggccttgcaaggttagcaggtgatgccagtagtacacacgtgacaactcgtgtgatgggaacctttggatacttggcaccagagtatgcatctagtggaaaattaacagagaagtctgatgtttattcatatggcgttgtgcttttggagcttattacgggacggaaacctgttgaccagtctcaacccttaggtgatgaaagcctggttgaatgggctcgacctttgctttgctcagcacttgagactgaaattttgaagatgtagtagatcctaggcttggaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="78808" stop="75636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78508" g_stop="78312" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78311" i_stop="78019" i_length="293">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78018" g_stop="77932" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="284" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77931" i_stop="77556" i_length="376">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77555" g_stop="77485" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="355" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77484" i_stop="77307" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77306" g_stop="77227" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="435" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77226" i_stop="76697" i_length="530">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76696" g_stop="76549" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="583" r_length="148" r_score="0.966"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76008" g_stop="75935" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="656" r_length="73" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E460229" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78508" e_stop="78312"/>
          <exon e_start="78018" e_stop="77932"/>
          <exon e_start="77555" e_stop="77485"/>
          <exon e_start="77306" e_stop="77227"/>
          <exon e_start="76696" e_stop="76549"/>
          <exon e_start="76008" e_stop="75935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAAAGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCATCTTCATGGTAAGACAGGTTTGAGATAAATGAACTAATGAATTGAAGTACTTGGATTACTGTAGTCCAGATTTTGTTCTCTATGTTGAATTCTCCAACTCCACAATTCCAAGATGAGTTGCATATTTTTCTTATCATGGCTGGTAATGACCATTATGACATGAATAGCTGCTAACAACGGCTACAACCAATTGGCCTTATACTGTGCCACATTTCTATGAACATAAGTGAAACTGAGAAGGATGTTTTCTAGTCTCAGATATGATGCTAACGTAACTTCTATTGGTGATTAAATACTGCAGGTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGCTGCTGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACTGTAATTTTCTTATTATGTTTATATTTACTCTTGTCCACATTAGTTAAACCTAGGGCTTCTGGAGACTTAATAAAAGGAATAATGGGGACAAAGTGGCTTAAAGACTGGTTGAATTTCTCCAAAGAAGCTCAGATGCAGTATCCAATGTTGTTTTCTTAGCATGTGTTTTCATCAATGATAAAACCATGACTTGTCAATGTAATTGGTAACTGCACTGTTTATTAATGAGAACTAATGCTAAAATGGGAAAATCTTTTCTGTTGTAATGTCGGCAAGCTGAATGGACTTTCTTAGGGAATAGAGCACATTTTAAATGTTTTGCAATTTTCCTTTACTGATTTATCCTCTGAAATTCTGCTAATTATGTTGTTCTCAGGTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAGGTATATGACAGTATATCCTACCTAAATTTATGTCTGTGACTTGGTGTTTGTCATTGTTTGTTGAACTTAGGCATCTGAACCAAAAAAATCTCATATTCCGTGCTTGTAATGGTGTATAGGAAATTATATGTGTTATGGCTTATAGTTTATGCAATTTGACTATGTTTCGTCCTTTCAGGTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGGGTAGGTCATACATGTGCTAAGTCTTAAATTAGAAGAAATCTTAGTTGGCCTCTTTCTGTTGCAATATCACATTATCTGTCAACATCATCAACACCATGGTCAGTTGCACCATAAATAATCTCCAAAAACTTTTATCCTAAAGCTGCTTTTCCTTCTAAAACTTTTATAGTATTACTTTTTGTCACTTCCATTTCACTTTGAACCTCAGGGGAGAGAGTAAATTGACCTTTATTTAACATATATTGATTCCTCACTTGTAAGAACAACCTTCAGTCGGTATCAGCCTCGAGTTGTGGTAACTTTGTACTCTTGTATGGGGGCAGGATTTGGTCTTCAGTCAAACAGTTGCTTTTATGCAACATCTCAAAACCATAACGTATATGTCAGTCACTTAATTTTCCAATAGCCCTTGTCATCCTACCCACATAAGTGGTTTAAACTGATATTAAATTATTTATCAAAATGACTAATTTTATAGTTGTATGGCATGCCCTTAGCTGATGACTTGACATTGATGTAAACGATTTCAGATACTTGGCACCAGAGTATGCATCAAGTGGAAAATTAACAGAGAAATCTGATGTTTATTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGGGTAAGTTCAATTTTTTTTGTCGCTTTTAATTGCCTGTAATGATTGATGTTGATGCTTAATCAGAGCTTGTGGCCTAGGCTATGCTGTGTCCTAATCTATATGGGAGAACTGGGTTTCTAGGATGTTTATTTCTTTTGAGGAACAAGAAAGAGGTTGGTTTCCAAATTTTTCTTTGAAGGCTCTGGGCCTTATGGATGGTAATAGTGTATGTTGTTGTTGGCCAGAATATCTGCCGCTAAATGTAACGGCCAGAGTTCCTTACATATTTTAAGGGACTATTTTAAACCTACCCCCAATGTAATGGACCATTTTTGTCATTTTCCGTGAAATGTAGTAACCCAAGCATTCTTATTCATGTACCCCTGAATATTTACATTTAACAGAATGACAGGAATGGGTACGAGATACTGCTCTTAACCTTATCTGACTATTAGCATTGCTATTCACACTAGTGATGGAACCGTTTAAAGTTTTCCATGTTTCTGAAGTCATCCAACTAGTACTTCCATTAAATTGAAGCTGAGAGATATTATCCTGTAGGCTCGACCTTTGC-TTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAA</genome_strand>
        <mrna_strand>CGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGCGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAAAGGTTACTTGTCTACGACTATGTGCCAAATGACACACTTGACTATCACCTTCATG.....................................................................................................................................................................................................................................................................................................GTAAAGGCATGCAAACTATGGATTGGGCTACCCGAGTAAAAGTAGCTGCTGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................GTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAG..................................................................................................................................................................................GTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGGCACCAGAGTATGCATCTAGTGGAAAATTAACAGAGAAGTCTGATGTTTATTCATATGGCGTTGTGCTTTTGGAGCTTATTACGGGACGGAAACCTGTTGACCAGTCTCAACCCTTAGGTGATGAAAGCCTGGTTGAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGACCTTTGCTTTGCTC-AGCACTTGAGACTG-AAATTTTGAAGATGTAGTAGATCCTAGGCTTGGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560935" ref_strand="+" ref_description="SGN-E560935 [20668]">
      <seq>gtgtcttaatgacggaagagaagtcgctgtcaaacagctgaaaagtgtaaagtggacaacgggagcgtgagttcagagcagaagttgagattatcagccgtgtgcaccatcgccatttggtttcacttgttggttactgtatctcagagcagcaataggttacttgtctacgactatgtgccaaatgacacgcttgactatcaccttcatggtaaaggcatgccaactatggattgggctacccgagtaaaagtagcatgctgggtgcagcacgtggacttgcttatctgcatgaagactgtcatccccgcattatccatagggatatcaaaacatcaaacattctcttggatatcaattttcgaggcacaggttgctgattttggccttgcaaggttagcaggtgatgccagtagtacacacgtgacaactcgtgtgatgggaacctttggatacttggcaccagagtatgcatctagtggaaaattaacagagaagtctgatgttctattcgtatggcgttgtgcttttggagcttattacgggacggaaacctgttgaccagtctcaaccctctagggtgatgaaagcctggttgaatgggctcgacctttgcttgctcaaggcacttgagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="78821" stop="75675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78521" g_stop="78312" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78311" i_stop="78019" i_length="293">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78018" g_stop="77932" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77931" i_stop="77556" i_length="376">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77555" g_stop="77485" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="372" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77484" i_stop="77307" i_length="178">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77306" g_stop="77227" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="452" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77226" i_stop="76697" i_length="530">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76696" g_stop="76549" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="603" r_length="151" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.867" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76008" g_stop="75975" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="638" r_length="35" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E560935" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78521" e_stop="78312"/>
          <exon e_start="78018" e_stop="77932"/>
          <exon e_start="77555" e_stop="77485"/>
          <exon e_start="77306" e_stop="77227"/>
          <exon e_start="76696" e_stop="76549"/>
          <exon e_start="76008" e_stop="75975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTG-GAAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAA-AGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCATCTTCATGGTAAGACAGGTTTGAGATAAATGAACTAATGAATTGAAGTACTTGGATTACTGTAGTCCAGATTTTGTTCTCTATGTTGAATTCTCCAACTCCACAATTCCAAGATGAGTTGCATATTTTTCTTATCATGGCTGGTAATGACCATTATGACATGAATAGCTGCTAACAACGGCTACAACCAATTGGCCTTATACTGTGCCACATTTCTATGAACATAAGTGAAACTGAGAAGGATGTTTTCTAGTCTCAGATATGATGCTAACGTAACTTCTATTGGTGATTAAATACTGCAGGTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGC-TGCT-GGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACTGTAATTTTCTTATTATGTTTATATTTACTCTTGTCCACATTAGTTAAACCTAGGGCTTCTGGAGACTTAATAAAAGGAATAATGGGGACAAAGTGGCTTAAAGACTGGTTGAATTTCTCCAAAGAAGCTCAGATGCAGTATCCAATGTTGTTTTCTTAGCATGTGTTTTCATCAATGATAAAACCATGACTTGTCAATGTAATTGGTAACTGCACTGTTTATTAATGAGAACTAATGCTAAAATGGGAAAATCTTTTCTGTTGTAATGTCGGCAAGCTGAATGGACTTTCTTAGGGAATAGAGCACATTTTAAATGTTTTGCAATTTTCCTTTACTGATTTATCCTCTGAAATTCTGCTAATTATGTTGTTCTCAGGTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTT-GAGGCACAGGTATATGACAGTATATCCTACCTAAATTTATGTCTGTGACTTGGTGTTTGTCATTGTTTGTTGAACTTAGGCATCTGAACCAAAAAAATCTCATATTCCGTGCTTGTAATGGTGTATAGGAAATTATATGTGTTATGGCTTATAGTTTATGCAATTTGACTATGTTTCGTCCTTTCAGGTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGGGTAGGTCATACATGTGCTAAGTCTTAAATTAGAAGAAATCTTAGTTGGCCTCTTTCTGTTGCAATATCACATTATCTGTCAACATCATCAACACCATGGTCAGTTGCACCATAAATAATCTCCAAAAACTTTTATCCTAAAGCTGCTTTTCCTTCTAAAACTTTTATAGTATTACTTTTTGTCACTTCCATTTCACTTTGAACCTCAGGGGAGAGAGTAAATTGACCTTTATTTAACATATATTGATTCCTCACTTGTAAGAACAACCTTCAGTCGGTATCAGCCTCGAGTTGTGGTAACTTTGTACTCTTGTATGGGGGCAGGATTTGGTCTTCAGTCAAACAGTTGCTTTTATGCAACATCTCAAAACCATAACGTATATGTCAGTCACTTAATTTTCCAATAGCCCTTGTCATCCTACCCACATAAGTGGTTTAAACTGATATTAAATTATTTATCAAAATGACTAATTTTATAGTTGTATGGCATGCCCTTAGCTGATGACTTGACATTGATGTAAACGATTTCAGATACTTGGCACCAGAGTATGCATCAAGTGGAAAATTAACAGAGAAATCTGATGTT-TATTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCT-TA-GGTGATGAAAGCCTGGTTGAATGGGTAAGTTCAATTTTTTTTGTCGCTTTTAATTGCCTGTAATGATTGATGTTGATGCTTAATCAGAGCTTGTGGCCTAGGCTATGCTGTGTCCTAATCTATATGGGAGAACTGGGTTTCTAGGATGTTTATTTCTTTTGAGGAACAAGAAAGAGGTTGGTTTCCAAATTTTTCTTTGAAGGCTCTGGGCCTTATGGATGGTAATAGTGTATGTTGTTGTTGGCCAGAATATCTGCCGCTAAATGTAACGGCCAGAGTTCCTTACATATTTTAAGGGACTATTTTAAACCTACCCCCAATGTAATGGACCATTTTTGTCATTTTCCGTGAAATGTAGTAACCCAAGCATTCTTATTCATGTACCCCTGAATATTTACATTTAACAGAATGACAGGAATGGGTACGAGATACTGCTCTTAACCTTATCTGACTATTAGCATTGCTATTCACACTAGTGATGGAACCGTTTAAAGTTTTCCATGTTTCTGAAGTCATCCAACTAGTACTTCCATTAAATTGAAGCTGAGAGATATTATCCTGTAGGCTCGACCTTTGCTTGCTCAA-GCACTTGAGACTG</genome_strand>
        <mrna_strand>GTGT-CTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGTAAAGTGGACAACGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAATAGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCACCTTCATG.....................................................................................................................................................................................................................................................................................................GTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGCATGCTGGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACT........................................................................................................................................................................................................................................................................................................................................................................................GTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTCGAGGCACAG..................................................................................................................................................................................GTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGGCACCAGAGTATGCATCTAGTGGAAAATTAACAGAGAAGTCTGATGTTCTATTCGTATGGCGTTGTGCTTTTGGAGCTTATTACGGGACGGAAACCTGTTGACCAGTCTCAACCCTCTAGGGTGATGAAAGCCTGGTTGAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGACCTTTGCTTGCTCAAGGCACTTGAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371669" ref_strand="+" ref_description="SGN-E371669 [TUS-29-I14]">
      <seq>ccagctccagattctcctcctccatcagagtcaaaatcacctccacctaaccccttaacatctccacccccttctatctcacctcctgctcccccaaataatacttctccagctggagctccccctccattgcctgtgactcgccttcctacagagaagcccactgctatccctaaacctgctatcactgcagattcaagtgccagaaatggtgggggaaataaggcaggaagtgtggtggcaattggtgttgttgctgggtttttggcccttagcttggtgattgttgctgtctggtttacacgtaggcgaaagaaaagagagagtgcatttaatctcaattacctgggaccctctccatttgcttcctcaccaaattcagatacatcattcctgagatcaaggtctcaaaattccacttatctagctccagctggctcgcaaagcaattttatgtactctccggaccatgggggtattggaaattcaagatcatggttcacttacgaagaattatctgaggcaacaaatggtttttctcctgatagtgtattgtgtgaaggtgggtttggatgtgtctacaaaggtgttcttaatgacggaagagaagtcgctgtcaaacagctgaaaagtggaagtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="80160" stop="78164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79860" g_stop="79815" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79814" i_stop="79467" i_length="348">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79466" g_stop="79131" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="382" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79130" i_stop="78726" i_length="405">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.456" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78725" g_stop="78464" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="644" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E371669" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79860" e_stop="79815"/>
          <exon e_start="79466" e_stop="79131"/>
          <exon e_start="78725" e_stop="78464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCCAGATTCTCCTCCTCCATCAGAGTCAAAATCACCTCCACCCGCAGAATCTCCTCCACCTCCACCTCCTACACCTGCGGCGCCACCACCTTCAGCGCCTCCTCCAAAGCCATCAGCGTCACCACCACCACCACCTTCTCCTAAGGCTCCTCCACCAGCTAATTCTCCACCTCCAGCTTCATCTCCACCCCCACCATCAAAAGAATCTCCTCCTCCTTCCCCACCTCCTCCCCCTCCAGCAGTTTCACCTTCTCCTCCACCTCCAGTGAAAAATCAATCACCACCCCCTGATTCTCCACCTCCTGCACCTGTTGCAAATCCGCCACAAAACTCCCCTCCACCTCCTGCATTGGCGCCTCCTCCAGCCTCACTGCCATCCGCCCCTCCACCTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAGGTATTGCTTTCAAGGTTCTTGAATTTCCTTATTAATTTTGATGTATTGAATTTGTTTATTGCTAGAAAATTCCAATTTTCCAGAGTGATAAAATGCATTCATCCTTTTCCAAAATCAAGCTTGCATGGATTACTGTAGTGATGACAAAGAACTATAGAATGTTAACCATAATGATCATGGAATAAATGTTTAATAAGCTCTATTTTTCGAAGTTACAGATGGCCCATCTGTATTACTGAACTTTAGATGCATACTTTTGTTTCGTTTGAATGATAATTCACACTGCTTCTTTCCCTTTGTCAATTTTGCAAACTTATCTCGAGTATTGTTAATGATTATAATAGAACTATAACAACCTACCCCCTTCCCAGCTTTTGGAGTCTTAATGAAATACTATTTTTCCAGATACATCATTCCTGAGATCAAGGTCTCAAAATTCCACTTATCTAGCTCCAGCTGGCTCGCAAAGCAATTTTATGTACTCTCCGGACCATGGGGGTATTGGAAATTCAAGATCATGGTTCACTTACGAAGAATTATCTGAGGCAACAAATGGTTTTTCTCCTGATAGTGTATTGGGTGAAGGTGGGTTTGGATGTGTCTACAAAGGTGTTCTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACA</genome_strand>
        <mrna_strand>CCAGCTCCAGATTCTCCTCCTCCATCAGAGTCAAAATCACCTCCAC............................................................................................................................................................................................................................................................................................................................................................CTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCATTCCTGAGATCAAGGTCTCAAAATTCCACTTATCTAGCTCCAGCTGGCTCGCAAAGCAATTTTATGTACTCTCCGGACCATGGGGGTATTGGAAATTCAAGATCATGGTTCACTTACGAAGAATTATCTGAGGCAACAAATGGTTTTTCTCCTGATAGTGTATTGTGTGAAGGTGGGTTTGGATGTGTCTACAAAGGTGTTCTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280644" ref_strand="+" ref_description="SGN-E280644 [cLER-1-J16]">
      <seq>ccagctccagattctcctcctccatcagagtcaaaatcacctccacctaaccccttaacatctccacccccttctatctcacctcctgctcccccaaataatacttctccagctggagctccccctccattgcctgtgactcgccttcctacagagaagcccactgctatccctaaacctgctatcactgcagattcaagtgccagaaatggtgggggaaataaggcaggaagtgtggtggcaattggtgttgttgctggggttttggcccttagcttggtgattgttgctgtctggtttacacgtaggcgaaagaaaagagagagtgcatttaatctcaattacctgggaccctctccatttgcttcctcaccaaattcagatacatcattcctgagatcaaggtctcaaaattccacttatctagctccagctggctcgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="80160" stop="78362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79860" g_stop="79815" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79814" i_stop="79467" i_length="348">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79466" g_stop="79131" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="382" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79130" i_stop="78726" i_length="405">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.456" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78725" g_stop="78662" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="446" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E280644" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79860" e_stop="79815"/>
          <exon e_start="79466" e_stop="79131"/>
          <exon e_start="78725" e_stop="78662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCCAGATTCTCCTCCTCCATCAGAGTCAAAATCACCTCCACCCGCAGAATCTCCTCCACCTCCACCTCCTACACCTGCGGCGCCACCACCTTCAGCGCCTCCTCCAAAGCCATCAGCGTCACCACCACCACCACCTTCTCCTAAGGCTCCTCCACCAGCTAATTCTCCACCTCCAGCTTCATCTCCACCCCCACCATCAAAAGAATCTCCTCCTCCTTCCCCACCTCCTCCCCCTCCAGCAGTTTCACCTTCTCCTCCACCTCCAGTGAAAAATCAATCACCACCCCCTGATTCTCCACCTCCTGCACCTGTTGCAAATCCGCCACAAAACTCCCCTCCACCTCCTGCATTGGCGCCTCCTCCAGCCTCACTGCCATCCGCCCCTCCACCTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAGGTATTGCTTTCAAGGTTCTTGAATTTCCTTATTAATTTTGATGTATTGAATTTGTTTATTGCTAGAAAATTCCAATTTTCCAGAGTGATAAAATGCATTCATCCTTTTCCAAAATCAAGCTTGCATGGATTACTGTAGTGATGACAAAGAACTATAGAATGTTAACCATAATGATCATGGAATAAATGTTTAATAAGCTCTATTTTTCGAAGTTACAGATGGCCCATCTGTATTACTGAACTTTAGATGCATACTTTTGTTTCGTTTGAATGATAATTCACACTGCTTCTTTCCCTTTGTCAATTTTGCAAACTTATCTCGAGTATTGTTAATGATTATAATAGAACTATAACAACCTACCCCCTTCCCAGCTTTTGGAGTCTTAATGAAATACTATTTTTCCAGATACATCATTCCTGAGATCAAGGTCTCAAAATTCCACTTATCTAGCTCCAGCTGGCTCGCAAAG</genome_strand>
        <mrna_strand>CCAGCTCCAGATTCTCCTCCTCCATCAGAGTCAAAATCACCTCCAC............................................................................................................................................................................................................................................................................................................................................................CTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGGTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCATTCCTGAGATCAAGGTCTCAAAATTCCACTTATCTAGCTCCAGCTGGCTCGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301098" ref_strand="+" ref_description="SGN-E301098 [cLEW-22-J24]">
      <seq>ccccacctcctccccctccagcagtttcaccttctcctccacctccagtgaaaaatcaatcaccaccccctgattctccacctcctgcacctgttgcaaatccgccacaaaactcccctccacctcctgcattggcgcctcctccagcctcactgccatccgcccctccacctaaccccttaacatctccacccccttctatctcacctcctgctcccccaaataatacttctccagctggagctccccctccattgcctgtgactcgccttcctacagagaagcccactgctatccctaaacctgctatcactgcagattcaagtgccagaaatggtgggggaaataaggcaggaagtgtggtggcaattggtgttgttgctgggtttttggcccttagcttggtgattgttgctgtctggtttacacgtaggcgaaagaaaagagagagtgcatttaatctcaattacctgngaccctctccatttgcttcctcaccaaattcagatacatcattcctgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="79937" stop="78408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79637" g_stop="79131" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79130" i_stop="78726" i_length="405">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.456" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78725" g_stop="78708" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="525" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E301098" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79637" e_stop="79131"/>
          <exon e_start="78725" e_stop="78708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACCTCCTCCCCCTCCAGCAGTTTCACCTTCTCCTCCACCTCCAGTGAAAAATCAATCACCACCCCCTGATTCTCCACCTCCTGCACCTGTTGCAAATCCGCCACAAAACTCCCCTCCACCTCCTGCATTGGCGCCTCCTCCAGCCTCACTGCCATCCGCCCCTCCACCTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAGGTATTGCTTTCAAGGTTCTTGAATTTCCTTATTAATTTTGATGTATTGAATTTGTTTATTGCTAGAAAATTCCAATTTTCCAGAGTGATAAAATGCATTCATCCTTTTCCAAAATCAAGCTTGCATGGATTACTGTAGTGATGACAAAGAACTATAGAATGTTAACCATAATGATCATGGAATAAATGTTTAATAAGCTCTATTTTTCGAAGTTACAGATGGCCCATCTGTATTACTGAACTTTAGATGCATACTTTTGTTTCGTTTGAATGATAATTCACACTGCTTCTTTCCCTTTGTCAATTTTGCAAACTTATCTCGAGTATTGTTAATGATTATAATAGAACTATAACAACCTACCCCCTTCCCAGCTTTTGGAGTCTTAATGAAATACTATTTTTCCAGATACATCATTCCTGAGAT</genome_strand>
        <mrna_strand>CCCCACCTCCTCCCCCTCCAGCAGTTTCACCTTCTCCTCCACCTCCAGTGAAAAATCAATCACCACCCCCTGATTCTCCACCTCCTGCACCTGTTGCAAATCCGCCACAAAACTCCCCTCCACCTCCTGCATTGGCGCCTCCTCCAGCCTCACTGCCATCCGCCCCTCCACCTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGNGACCCTCTCCATTTGCTTCCTCACCAAATTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCATTCCTGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340211" ref_strand="+" ref_description="SGN-E340211 [cTOF-2-B1]">
      <seq>gtattctttagtggaagattacacgaacttgggaccgaagaagaaccagcattacacgcgtcttaggtgttttgacttatggaaactacattcttgggctgcagggctgactgagtttccatttggaagaaatcaagagagcacaagtgaagcaattaatgcatattattcagcagcattgatgggatccgcatatggagatgcagatcttgtttcgcttggctccactctaacagcctttgaaatccagtcagcacagacttggtggcatgtaaaaagagataacaaaatatatgcaccaagatttgtgaagaagaataaggttgttggtatattatggtctagaaaaagagacagcattctctggtttgctccagctgagaggaaagacattaggcttggaattcaagttctaccaatattgccaatcactgaggttgtgttttctgatgttgattatgtgaaggagctcgtaaaatgggcattcactagcgtacccaaaaacagaactgaggaaggatggaaaggatttgtttatgccttggaagcaatttataagcagaagcaagctctaaaagaagtgagggaccttagcagtcatgatgatggaaattcactctcaaatcttttgtggtggattcatagcagaaaatgatcagctttaaacttgagaattcactaattatgcttgttacattgnntattcttgatggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="84394" stop="83077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84094" g_stop="83377" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E340211" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84094" e_stop="83377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGAGAATTCACTAATTATGCTTGTTACATTGTTTATTCTTGATGGATTGA</genome_strand>
        <mrna_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGAGAATTCACTAATTATGCTTGTTACATTGNNTATTCTTGATGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340373" ref_strand="+" ref_description="SGN-E340373 [cTOF-2-B2]">
      <seq>gtattctttagtggaagattacacgaacttgggaccgaagaagaaccagcattacacgcgtcttaggtgttttgacttatggaaactacattcttgggctgcagggctgactgagtttccatttggaagaaatcaagagagcacaagtgaagcaattaatgcatattattcagcagcattgatgggatccgcatatggagatgcagatcttgtttcgcttggctccactctaacagcctttgaaatccagtcagcacagacttggtggcatgtaaaaagagataacaaaatatatgcaccaagatttgtgaagaagaataaggttgttggtatattatggtctagaaaaagagacagcattctctggtttgctccagctgagaggaaagacattaggcttggaattcaagttctaccaatattgccaatcactgaggttgtgttttctgatgttgattatgtgaaggagctcgtaaaatgggcattcactagcgtacccaaaaacagaactgaggaaggatggaaaggatttgtttatgccttggaagcaatttataagcagaagcaagctctaaaagaagtgagggaccttagcagtcatgatgatggaaattcactctcaaatcttttgtggtggattcatagcagaaaatgatcagctttaaacttgagaattcactaattatgcttgttacattgtttattcttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="84394" stop="83080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84094" g_stop="83380" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E340373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84094" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGAGAATTCACTAATTATGCTTGTTACATTGTTTATTCTTGATGGAT</genome_strand>
        <mrna_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGAGAATTCACTAATTATGCTTGTTACATTGTTTATTCTTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265660" ref_strand="+" ref_description="SGN-E265660 [cLEI-14-D24]">
      <seq>caagctctcctgtgatagttcttttactaagtacgctatcagactccggaatcgtcaatcgtggatcctatatgcgtctgcaccgattcatttgactaataatgtatccaccattaagtctggtgggtactcaggtgttattcgtattgctctactggctgaaactgattcccaatttgagaaaatacttgatacgtatagctcggcttatcccgtgtctggaagtgccattttggggtcttttgctctcaagaataagtgggatgtgaagggtgcggggaagatgctaatgcttgctcaccccctccattgacgacttctttcaaaagcacatgcttcagtaactgtgctggaggatgtcaagtatagtagcatggatggtgagcttgcaggtgtaattggagatacatgggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="85270" stop="84253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84970" g_stop="84553" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E265660" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84970" e_stop="84553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACACTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTTCTCAGGTGTTATTCGTATTGCTCTACTGGCTGATTCTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGTATAAGTGGGATGTGAAGGGTGCGGGGAAGTTGCTAATGCTTGCTCACCCCCTCCATTGTCGACTTCTTTCAAAAGCAGATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGTTGGTGTAATTGGAGATACATGGGATCTT</genome_strand>
        <mrna_strand>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACGCTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTACTCAGGTGTTATTCGTATTGCTCTACTGGCTGAAACTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGAATAAGTGGGATGTGAAGGGTGCGGGGAAGATGCTAATGCTTGCTCACCCCCTCCATTGACGACTTCTTTCAAAAGCACATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGCAGGTGTAATTGGAGATACATGGGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314817" ref_strand="+" ref_description="SGN-E314817 [cTOA-20-P5]">
      <seq>atttgcagaaatcttggacttttcagcaactattcttgacgacttcattgacacgaagatgtcacgttctgaatttctcacttattcaaagtcaactagacaatagagaatctccagattcagattttctatctattcctaatccaccttctctttaaattaaaccaagtagccaatatattaaaaagggtcttctaaaaatctcttctttaatcatcttgaatgggagctggtcctccaaaacctctgtacagtgagtattcaatcctcaacagcatgaaaatggtgccacttttactgttttatgcattttctgtttttgtacagggttataatgctgaattaaccttgcaccaaagcactcagtttctcttccctcaaggaaaatctttagtcttgcctgaaccatcagattacttttctagtcatcttgtatctacccctttgcccactaattcattttttcaaaattttgtactcaagaatggtgatcagcctgagtatatccaaccttatcttattcgctctgctaactcatccatttctatttcttatccatctcagaacattacctctgatttcattgaacagatttttcgacccgattttactatatctgcttcccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="86070" stop="84843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85770" g_stop="85142" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E314817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85770" e_stop="85142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTCCAACAA</genome_strand>
        <mrna_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTTACTATATCTGCTTCCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314686" ref_strand="+" ref_description="SGN-E314686 [cTOA-20-P4]">
      <seq>atttgcagaaatcttggacttttcagcaactattcttgacgacttcattgacacgaagatgtcacgttctgaatttctcacttattcaaagtcaactagacaatagagaatctccagattcagattttctatctattcctaatccaccttctctttaaattaaaccaagtagccaatatattaaaaagggtcttctaaaaatctcttctttaatcatcttgaatgggagctggtcctccaaaacctctgtacagggagtattcaatcctcaacagcatgaaaatggtgccacttttactgttttatgcattttctgtttttgtacagggttataatgctgaattaaccttgcaccagagcactcagtttctcttccctcaaggaaaatctttagtcttgcctgaaccatcagattacttttctagtcatcttgtatctacccctttgcccactaattcattttttcaaaattttgtactcaagaatggtgatcagcctgagtatatccaaccttatcttattcgctctgctaactcatccatttctatttcttatccatctcagaacattacctctgatttcattgaacagattcttcgacccgatttaactatatctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="86070" stop="84849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85770" g_stop="85148" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E314686" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85770" e_stop="85148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTC</genome_strand>
        <mrna_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGGGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAGAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTCTTCGACCCGATTTAACTATATCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573803" ref_strand="+" ref_description="SGN-E573803 [33170]">
      <seq>aaattcaaagtatgcccggttgaggtgttttgacttgtggaagctgcactcttgggctgggggattgacagagtttgctgatggacgaaaccaggagagcacaagtgaagcagttaatgcatactattcagcagctttaatgggtttggcctatggggatgcccatcttgttgccattggatcgaccctttcagctttagagattcattcggcacagacttggtggcatgtgaaagagggaagcactttatatggggaagaattcacaaaaaacaacagggtggtgggtgttttatggtctaacaaaagggatagcggcctttggtttgctccacctgaatggaaagagtgtagacttggaattcaggtcttaccaatattgcccattactgaacttctgttttcagacgtgcagtttgtgaagcagttggtcgaatggacactgccagctctggcaagggaaggggttggagaagggtggaaagggtttgtgtatactttggaagcaatatatgataaagtgggtgctctaaacaaaactaggagcttaactgggtttgatgatggaaattctctttcaaatcttctatggtggattcattctagagatgatgaagtgggggaatctgatagaggaagcaagttctgctggttcagacactactctcattgatccttttacggtgcgttacatttgagtattctcaatatgatctgatggggacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="90752" stop="89420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90452" g_stop="89720" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E573803" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90452" e_stop="89720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCAAAGTATGCCCGCCTGAGGTGTTTTGACTTGTGGAAGTTGCATTCTTGGGCTGGGGGATTGACAGAGTTTGCAGATGGACGAAACCAAGAGAGCACAAGTGAAGCAGTTAATGCATACTATTCAGCAGCTTTGATGGGTTTGGCCTATGGGGATACCCATCTTGTTGCCATTGGATCGACCCTTTCAGCTTTAGAGATTCATTCTGCACAGACTTGGTGGCATGTGAAAGAGGGAAGCACTTTATATGGGGAAGAATTCACAAAAAACAACAGGGTGGTGGGTGTTTTATGGTCTAACAAAAGGGATAGCGGCCTTTGGTTTGCTCCACCTGAATGGAAAGAGTGTAGACTTGGAATTCAGGTCTTACCAATATTGCCCATTACTGAACTTCTGTTTTCAGACGTGCAGTTTGTGAAGCAGTTGGTCGAATGGACACTGCCAGCTCTGGCAAGGGAAGGGGTTGGAGAAGGATGGAAAGGGTTTGTGTATACTTTGGAAGCAATATATGATAAAGTGGGTGCTTTGAACAAAACTAGGAGCTTAACTGGGTTTGATGATGGAAATTCTCTTTCAAATCTTCTATGGTGGATTCATTCTAGAGATAATGAAGTGGCAGAAGGTGATAGAGGAAGCAAGTTCTGCTGGTTCCGACACTACTCTCATTGATTCTTTTACGGTGTCTTACATTTTGAGTATTCTCAATATGATCTGATGGGAACCATTAAA</genome_strand>
        <mrna_strand>AAATTCAAAGTATGCCCGGTTGAGGTGTTTTGACTTGTGGAAGCTGCACTCTTGGGCTGGGGGATTGACAGAGTTTGCTGATGGACGAAACCAGGAGAGCACAAGTGAAGCAGTTAATGCATACTATTCAGCAGCTTTAATGGGTTTGGCCTATGGGGATGCCCATCTTGTTGCCATTGGATCGACCCTTTCAGCTTTAGAGATTCATTCGGCACAGACTTGGTGGCATGTGAAAGAGGGAAGCACTTTATATGGGGAAGAATTCACAAAAAACAACAGGGTGGTGGGTGTTTTATGGTCTAACAAAAGGGATAGCGGCCTTTGGTTTGCTCCACCTGAATGGAAAGAGTGTAGACTTGGAATTCAGGTCTTACCAATATTGCCCATTACTGAACTTCTGTTTTCAGACGTGCAGTTTGTGAAGCAGTTGGTCGAATGGACACTGCCAGCTCTGGCAAGGGAAGGGGTTGGAGAAGGGTGGAAAGGGTTTGTGTATACTTTGGAAGCAATATATGATAAAGTGGGTGCTCTAAACAAAACTAGGAGCTTAACTGGGTTTGATGATGGAAATTCTCTTTCAAATCTTCTATGGTGGATTCATTCTAGAGATGATGAAGTGGGGGAATCTGATAGAGGAAGCAAGTTCTGCTGGTTCAGACACTACTCTCATTGATCCTTTTACGGTGCGTTACA-TTTGAGTATTCTCAATATGATCTGATGGGGACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544191" ref_strand="+" ref_description="SGN-E544191 [TUS-66-G9](-)">
      <seq>ctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtcacaaatgcaatcaaaagaatgtaacagaacatactcattactatggatacaggatggcgtttcgtacagctttcaagacccttttaaacctgcagaaattaaagggtcgattggtaatgttaaggccattctcccctgcacattttgagaatggggattggaataacggagggaattgtaatagaacaagaccattcaagaatgaagaaatgaagttggatggatacgaattgaagatgtatatgactcaattggaagaatttaaggcagcagaaaaagaaggtagaaaaaggggtagtgtcaaattcaaattgctagatacaactgaagcaatggtaatgagaccagatggacatccaaatcattatggacattggccaaatgaaaagaaattgcctgattgtgtacattggtgtatgccaggccctgttgatacttggaatgagcttttattagcaactttaaagatggaaggagatgaattatagaaacagaattatgtctagaatttggtaacaaacatataataactttttcaaatgtttgtgtaatttgttttaggaaaaagggtataagttttttgtaaagaagttttatatcaatatatatttttaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="105681" stop="104344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105381" g_stop="104650" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="763"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E544191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105381" e_stop="104650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</genome_strand>
        <mrna_strand>CTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267490" ref_strand="+" ref_description="SGN-E267490 [cLEI-8-H2]">
      <seq>aaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatgcgtccattcctgtagacgtatcggagactacagacacaaaattcaggcgatggttgtataaagattacaactttacaatcatggccctctggtctccgcagttaatcaaatcctatgactcagatcctactggggatccctattacagtctcatgaatttgtatcttgacaaggctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtcacaaatgcaatcaaaaagatgtaacagaacatactcattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="106294" stop="104924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105994" g_stop="105717" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="105557" i_length="160">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105556" g_stop="105224" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="611" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E267490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105994" e_stop="105717"/>
          <exon e_start="105556" e_stop="105224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAATGTAAGCATTGAGTTTTTGTGCTTCTATGTTTTCTGCTATGCCTAAATTTCAACATTCTATGATATATATTGTTATTACAGCTGTTTGAAACATGCTAAATGTTGTCATAATTCAGATAACAGAATTGGCAAAATCATCAGCTAATATGTTTATATCTCAGGCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTAT</genome_strand>
        <mrna_strand>AAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT................................................................................................................................................................GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAAGATGTAACAGAACATACTCATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544192" ref_strand="+" ref_description="SGN-E544192 [TUS-66-G9]">
      <seq>ggtggtgtagcagagttgtttgatagctttagaaaagttattctaccaatcgcgacgttactgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatgcgtccattcctgtagacgtatcggagactacagacacaaaattcaggcgatggttgtataaagattacaactttacaatcatggccctctggtctccgcagttaatcaaatcctatgactcagatcctactggggatccctattacagtctcatgaatttgtatcttgacaaggctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="106532" stop="104967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106232" g_stop="105717" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="105557" i_length="160">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105556" g_stop="105267" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="806" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E544192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106232" e_stop="105717"/>
          <exon e_start="105556" e_stop="105267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAATGTAAGCATTGAGTTTTTGTGCTTCTATGTTTTCTGCTATGCCTAAATTTCAACATTCTATGATATATATTGTTATTACAGCTGTTTGAAACATGCTAAATGTTGTCATAATTCAGATAACAGAATTGGCAAAATCATCAGCTAATATGTTTATATCTCAGGCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCA</genome_strand>
        <mrna_strand>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT................................................................................................................................................................GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576678" ref_strand="+" ref_description="SGN-E576678 [59935]">
      <seq>gtgtagcagagttgtttgatagctntcagaaaagttgttctgccaatcgcgacgttactgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccggagcaagtttctccaggaattactagtactagtactaactattcggcgaaaacaggaataaggcagcaaacatgtaacatctttgtgggaaaatgggtacaatatccaaagggaccatactatacaaatgaaacaaactgtgtgatcgatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacattggagatggaagccaaatgattgtgagcttccactttttgatgctaatcaatttctgcaaattgttcgtggaaagactttggcttttgttggagattctctagcaagaaatcaaatgcagtcactcgtgtgccttctagctaatgcgtccattcctgtagacgtgtcggagactacggacacaagatacaggcgatggttgtataaagattacaacttcacaatcatggccctctggtctccacagttgatcaaatccatcgactctgatcctactggtgatccctattacagtctcatgaatctgtatctcgacaaggctgatgatgtctgggcaagtcaggttgacaaagcttgatattgtcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="106528" stop="105033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106228" g_stop="105717" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105716" i_stop="105557" i_length="160">
            <donor d_prob="0.898" d_score="0.92"/>
            <acceptor a_prob="0.798" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105556" g_stop="105333" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="732" r_length="225" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E576678" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106228" e_stop="105717"/>
          <exon e_start="105556" e_stop="105333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTAGCAGAGTTGTTTGATAGCTTT-AGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAATGTAAGCATTGAGTTTTTGTGCTTCTATGTTTTCTGCTATGCCTAAATTTCAACATTCTATGATATATATTGTTATTACAGCTGTTTGAAACATGCTAAATGTTGTCATAATTCAGATAACAGAATTGGCAAAATCATCAGCTAATATGTTTATATCTCAGGCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGC-TGATATTATCATAAT</genome_strand>
        <mrna_strand>GTGTAGCAGAGTTGTTTGATAGCTNTCAGAAAAGTTGTTCTGCCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCGGAGCAAGTTTCTCCAGGAATTACTA--G-TA---CTAGTACTAACTATTCGGCGAAAACAGGAATAAGGCAGCAAACATGTAACATCTTTGTGGGAAAATGGGTACAATATCCAAAGGGACCATACTATACAAATGAAACAAACTGTGTGATCGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACATTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTTTTTGATGCTAATCAATTTCTGCAAATTGTTCGTGGAAAGACTTTGGCTTTTGTTGGAGATTCTCTAGCAAGAAATCAAATGCAGTCACTCGTGTGCCTTCTAGCTAAT................................................................................................................................................................GCGTCCATTCCTGTAGACGTGTCGGAGACTACGGACACAAGATACAGGCGATGGTTGTATAAAGATTACAACTTCACAATCATGGCCCTCTGGTCTCCACAGTTGATCAAATCCATCGACTCTGATCCTACTGGTGATCCCTATTACAGTCTCATGAATCTGTATCTCGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGACAAAGCTTGATATTGTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341232" ref_strand="+" ref_description="SGN-E341232 [cTOE-22-E8]">
      <seq>agagttgtttgatagctttataaaagttattctaccaatcgcgacgttactgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="106521" stop="105414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106221" g_stop="105717" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E341232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106221" e_stop="105717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT</genome_strand>
        <mrna_strand>AGAGTTGTTTGATAGCTTTATAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306789" ref_strand="+" ref_description="SGN-E306789 [cLEY-11-K7]">
      <seq>tcgcgacgttcctgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="106483" stop="105554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106183" g_stop="105854" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E306789" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106183" e_stop="105854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGAT</genome_strand>
        <mrna_strand>TCGCGACGTTCCTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353021" ref_strand="+" ref_description="SGN-E353021 [cTOS-14-M8]">
      <seq>ttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggcattggccaaatgaaaatgtggcaaatgactgtgtgcattggtgcttgcctggtcctattgattcttggtctgatttcttgtttcatatgttcaagatggaggccatcagatcccttgaggaaaatcttcaatgagagagcaaaattatacaatgtactctgatttcatttatatttaggattcacgtctcagtcatctaaagaggaactcggtttctaagatatatagttatgttgccgtgaagatgcaaccatagccctgttttaaaaaatgttggaaaaagacgtcccttcttgaatttttatagaactgtcgatgttttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="110328" stop="109161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110028" g_stop="109452" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E353021" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110028" e_stop="109452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAACGCATTTAG</genome_strand>
        <mrna_strand>TTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701390" ref_strand="+" ref_description="SGN-E701390 [FA15DD04]">
      <seq>caacttataacttcactctagcaatgtattggtcaccatttttggtttcaacaaaagaagtagatgcagatggtccatgccatactggactctacaatctatacctagatgaagcagatgagaaatggaccaccaaaattgagggatatgactacattatcttaaacgctgggcactggtttgcgcggtgcagcgtctactatgtaaacaaccaacgagtagggtgcagatactgtggaataccaaatgtaactgaacttccatctacctatgcctaccaacgggcattcgaaactactcttaaagccatcaacaatttagacaattttaagggtgtagctattcttaggacatttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggcattggccaaatgaaaatgtggcaaatgactgtgtgcattggtgcttgcctggtcctattgattcttggtctgatttcttgtttcatatgttcaagatggaggccatcagatcccttgaggaaaatcttcaatgagagagcaaaattatacaatgtactctgatttcatttatatttaggattcacgtctcagtcatctaaagaggaactcggtttctaagatatatagttatgttgccgtgaagatgcaaccatagccctgttttaaaaatgttggaaaaagacgtcccttcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="110682" stop="109191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110382" g_stop="109483" g_length="900"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E701390" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110382" e_stop="109483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATA</genome_strand>
        <mrna_strand>CAACTTATAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTT-AAAAATGTTGGAAAAAGACGTCCCTTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415974" ref_strand="+" ref_description="SGN-E415974 [STM-22-C20]">
      <seq>ccctttttttagatgacaaaaacatgatttctaaatataaatgaaaatagagtacattgtataattttgttctcattaaagattttcctctagggatctgatggcctccatcttgaacatatgaaacaagaaatcagaccaagaatcaataggaccaggcaagcaccaatgaacacagtcatttgccacattttcatttggccaatgcccatatttacttgggtgaccatctggtctcaacaacatggctcgcgtagtatccatcaacctgaatctcttccccttcatcttcccttctttctccgcgacctcaaactcttccacttggatcctatattgctccatgctttgatcctccaacgcggtctcattacttccatatggccttgtccttgcacaatcacctccctcattccagttcccgccttcataatgagatggtgcaaatgtcctaagaattgctacacccttaaaattttctaaattgttgatggctttaagagtagttttaaatgccctttggtaggcataggtagatggaagttcagttacatttggcagtccacagtacctgcagccaactcgttgattgtttacatagtagacgctgcaccgggcaaaccagtgcccggcgtttaagatgatgtagtcatatccctcaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="109286" stop="110549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109581" g_stop="110249" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E415974" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E415974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109581" e_stop="110249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTCTTTAGATGACTGAGACGTGAATCCTAAATATAAATGAAATCAGAGTACATTGTATAATTTTGCTCTCTCATTGAAGATTTTCCTCAAGGGATCTGATGGCCTCCATCTTGAACATATGAAACAAGAAATCAGACCAAGAATCAATAGGACCAGGCAAGCACCAATGCACACAGTCATTTGCCACATTTTCATTTGGCCAATGCCCATATTTACTTGGGTGACCATCTGGTCTCATCAACATGGCTCGCGTTGTATCCATCAACCTGAATCTCTTCCCTTTCATCTTCCCTTCTTTCTCCGCGACCTCAAACTCTTCCACTTGGATCCTGTATTGCTCCACGCTTTGATCCTCCAACGAAGTCTCATTACTTCCATACGGCCTTGTCCTTGCACAATCACCTCCCTCATTCCATTTCCCGCCTTCATAATGAGAAGGCGCAAATGTCCTAAGAATAGCTACACCCTTAAAATTGTCTAAATTGTTGATGGCTTTAAGAGTAGTTTCGAATGCCCGTTGGTAGGCATAGGTAGATGGAAGTTCAGTTACATTTGGTATTCCACAGTATCTGCACCCTACTCGTTGGTTGTTTACATAGTAGACGCTGCACCGCGCAAACCAGTGCCCAGCGTTTAAGATAATGTAGTCATATCCCTCAATTTTG</genome_strand>
        <mrna_strand>CCCTTTTTTTAGATGACAAAAACATGATTTCTAAATATAAATGAAAATAGAGTACATTGTATAATTTTG-T-TCTCATTAAAGATTTTCCTCTAGGGATCTGATGGCCTCCATCTTGAACATATGAAACAAGAAATCAGACCAAGAATCAATAGGACCAGGCAAGCACCAATGAACACAGTCATTTGCCACATTTTCATTTGGCCAATGCCCATATTTACTTGGGTGACCATCTGGTCTCAACAACATGGCTCGCGTAGTATCCATCAACCTGAATCTCTTCCCCTTCATCTTCCCTTCTTTCTCCGCGACCTCAAACTCTTCCACTTGGATCCTATATTGCTCCATGCTTTGATCCTCCAACGCGGTCTCATTACTTCCATATGGCCTTGTCCTTGCACAATCACCTCCCTCATTCCAGTTCCCGCCTTCATAATGAGATGGTGCAAATGTCCTAAGAATTGCTACACCCTTAAAATTTTCTAAATTGTTGATGGCTTTAAGAGTAGTTTTAAATGCCCTTTGGTAGGCATAGGTAGATGGAAGTTCAGTTACATTTGGCAGTCCACAGTACCTGCAGCCAACTCGTTGATTGTTTACATAGTAGACGCTGCACCGGGCAAACCAGTGCCCGGCGTTTAAGATGATGTAGTCATATCCCTCAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701800" ref_strand="+" ref_description="SGN-E701800 [FA16DH10]">
      <seq>aagcctaatgagtgtgagctgccaatattcaacccgcttcagtttttggatttggtcagaaacaagtcggtggcaattgtgggtgattcagttggaagaaaccaaatgcagtctctgttatgcctcttgtcccgggttgaatatcctgttgatatttctgacaatccagatcaatctttcaaaaagtacaaatacacaacttacaacttcactctagcaatgtattggtcaccatttttggtttcaacaaaagaagtagatgcagatggtccatgccatactggactctacaatctatacctagatgaagcagatgagaaatggaccaccaaaattgagggatatgactacattatcttaaacgctgggcactggtttgcgcggtgcagcgtctactatgtaaacaaccaacgagtagggtgcagatactgtggaataccaaatgtaactgaacttccatctacctatgcctaccaacgggcattcgaaactactcttaaagccatcaacaatttagacaattttaagggtgtagctattcttaggacatttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="111958" stop="109488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111658" g_stop="111524" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111523" i_stop="110444" i_length="1080">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110443" g_stop="109788" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="791" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E701800" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111658" e_stop="111524"/>
          <exon e_start="110443" e_stop="109788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGTTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGGGTATCATTCTCTTCCTCTGAATTTTCTGTTGATAGTACTGCTGATTTAAGCTGACTAAAAATATTTATTTCAAATATTAGTTGTTTATTTACAAAATTAATTTATTTTTTAAACAAAAAGTGTGATAGTCATAATTTTTTTTAAAAAAATAATTTGATCCATAAAGTATTGTGCTTTAATAAAGTTTGAAATGCTAAATAATAAATATGATGTAAATAATTTATTCAAACACTTATATCAATAATTATTTTTATGACTCAAACATCTAATCTATATTTATCAATAAATTAAGATAAAAAGAAATATAGGATTAATGAGGAATATGGTCATCAACAGTAAGGTGATGGAAGGGAGCCCTTGGAGGAATCAAAGTCTAGTCACAAACCACTATCAAATTATATTATAGTAACCCTTTAACTACAAATTATTGAAAATAATAATCTTTTGGATTTTACTTCCCTCCTTAATTGTCGGCGAAATATTTAATAAATTAGTCATTGTCATGCTAGAATTGGTTTTCTTCTAGTCCAATTTTTTTTTTTTTAATTTCATTACTCATACCTAAAAAGAAATTAAAATAAAGAAAAGCATTACTGCAAGAAAAGAACAATAGAGACTTGTGACAATAGGAGGAACATTGGGGGCCAGCGTCAAATTTGTCGTATTGCTTTTTAATTCTCAGAAAATCTCTTAGGGTCCCCAAAATTATAAAGAGATTTTCTCCTTAAAATATATAATGCTTAAAAAAAAGAATGTGAAAAATGTCGATACAAAATCAAGATGATTATGCCTGATTTGTTTGACTAATTAAACCATTAATCAACAATTATTGACAGTGGTCCTTGTATTAAACAATTTATTTCCGGGAATTGCTGCCGACGCTTTGGGATTGTTTGGTACCAATATGGGGATAGACAAAGTTAACAGTGCATAAATAATTTTTGAATAAACTAAACTCTCTAATTAAACATAGGATAAATAACTCTATATTTTATTTCAGGATTATTATTAATGGATCTAATTTCTAAATAAAAATCAAAGAAGTGATGCAAACAATTGATCTTCTTTTTGTGTTTATAGGTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCA</genome_strand>
        <mrna_strand>AAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGCTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415973" ref_strand="+" ref_description="SGN-E415973 [STM-22-C20]">
      <seq>ctcatttataacaaatgaatagttttaggcagtgagaacattttactattcaattttttggattaatatgttcaattattttgtagagggtccaaatgacaagaagaaattaggatcatcacaagtgtcaacatacacgtagaaagtggtaccccttaatttcatgaactatgcatctttaacaacttacttttctccgtaatttctgccatctctactactactttctttttcaactttccatagaagaaaattaacactcagaaatggagcttccctttgggaaatactccacttcagctcaaagaaccccaagtatatttatacttttaattttagcagttgttgttctgggtcttatccctctttatcacccatttaattggtactcaggaggtttaataatccgaaatccgtctgaaatttcacccacatactttcctttcgaggagcagaagatagcgattaaagaagcagacaagtgtgatgtcttcagtggaaaatggatttggaatccagatgctccatattatacgaatgtgacctgtactgaaatccatgaccaccaaaactgtatgaagcatggaagacccgatagtgattattttgagtggaggtggaagcccctatggtgtgagctgcccattttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="112583" stop="111354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112218" g_stop="111626" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="653" r_length="580" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E415973" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112218" e_stop="111626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTTGTACAGGGT-CAAATGACAAGAAAAAAATAGGATTATCAAGTCACAAGTGTCAACATACATGTACAAAGTGCTGTCCCCTTAATTTCATGCACTCTGCATCTTTAACAACTTACTTTTCTCCGTGATTTCTGTCATCTCTTACTGCTACTACTACTTCTCTTTTTGAAATTTCAATAGAAGAAAATTAATTCTCAGAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAGCTCAAAAAACCCCAAGTATATTTATACTTTTAATTTTAGCAGTTGTTGTTCTGGGTCTTATCCCTCTTTACCACCCATTTAATTGGTACTCAGGAGGCTTAAGAATCCGAAATCCGTCTGAAATTTCACCCACATACTTTCCTTTGGAGGAGCAGAAGATAGAGTTTAAAGAAGCAGACAAGTGTGATATTTTCAGTGGAAAATGGATTTGGAATCCGGAGGCTCCATATTATACGAATGTGACTTGTACTGAAATCCATGACCACCAAAACTGTATGAAGCATGGAAGACCCGATAGTGATTATTTGAAGTGGAGATGGAAGCCTAATGAGTGTGAGCTGCCAATATTCAAC</genome_strand>
        <mrna_strand>AATTATTTTGTAGAGGGTCCAAATGACAAGAAGAAATTAGG---ATC-A-TCACAAGTGTCAACATACACGTAGAAAGTGGT-ACCCCTTAATTTCATGAACTATGCATCTTTAACAACTTACTTTTCTCCGTAATTTCTG----C-CAT-CT-CTACTACTACTT-TCTTTTTCAACTTTCCATAGAAGAAAATTAACACTCAGAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAGCTCAAAGAACCCCAAGTATATTTATACTTTTAATTTTAGCAGTTGTTGTTCTGGGTCTTATCCCTCTTTATCACCCATTTAATTGGTACTCAGGAGGTTTAATAATCCGAAATCCGTCTGAAATTTCACCCACATACTTTCCTTTCGAGGAGCAGAAGATAGCGATTAAAGAAGCAGACAAGTGTGATGTCTTCAGTGGAAAATGGATTTGGAATCCAGATGCTCCATATTATACGAATGTGACCTGTACTGAAATCCATGACCACCAAAACTGTATGAAGCATGGAAGACCCGATAGTGATTATTTTGAGTGGAGGTGGAAGCCCCTATGGTGTGAGCTGCCCATTTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301233" ref_strand="-" ref_description="SGN-E301233 [cLEW-24-I3]">
      <seq>aagtaaatatgggcattggccaaatgccaatgttgtattatataatgactgtgttcattggtgcttgcctggtcctattgattcttgggctgatattttgtttcatatgttcaagatggagagcacgaaatccctggaggaaaagcttgaatgagagagccaaatcatacaatgtactctgatttttttagttgcttcatttatttttagaatggttgtgaattacagaggaactctgttacatggatcgttttggttgagttgcaaatgtaactatagtactgttagaaaagttggggcaaaaaaagccttgttgaatttttaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="114004" stop="113077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113704" g_stop="113377" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="345"/>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E301233" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113704" e_stop="113377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTATAGA</genome_strand>
        <mrna_strand>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704304" ref_strand="+" ref_description="SGN-E704304 [FA23DF12]">
      <seq>ctccattgaagaaatttccacaaaaaaaaatggagcttccctttgggaaatactccacttcaacccaaagaaccccaagaatattcttacttttagttttagcagttgtcgttttgggtattatccctctttatcacccatttaattggtacccagcagatttagcaacccaacatccctctgaaatttcacccaattaccatgctgctgaggagcaaaagataaagattaaagagccggagacatgcgatatcttcaccggcgaatgggtctggaatccggatgctccatattacacgaatatgacctgttatgcgatccatgaacaccaaaattgtatcaagtatgggagacccgatacggattatttgaagtggagatggaagcctaatgggtgtgagctacctattttcgacccgtttctgtttttagatttggttaggaacaaatcgttggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacatattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaatcttcaccttgacaaagcagatgagaaatggaccactgaaattgaaagatatgactacgtcatcttaaatgcaggccactggtttgcccggatcagtgtatactttgagaacaaccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="116527" stop="113768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116227" g_stop="115710" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115709" i_stop="114346" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114345" g_stop="114068" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="796" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E704304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116227" e_stop="115710"/>
          <exon e_start="114345" e_stop="114068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</genome_strand>
        <mrna_strand>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261753" ref_strand="+" ref_description="SGN-E261753 [cLEG-61-J18]">
      <seq>tggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacatattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaatcttcaccttgacaaagcagatgagaaatggaccactgaaattgaaagatatgactacgtcatcttaaatgcaggccactggtttgcccggatcagtgtatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="116074" stop="113783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115774" g_stop="115710" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115709" i_stop="114346" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114345" g_stop="114083" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="328" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E261753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115774" e_stop="115710"/>
          <exon e_start="114345" e_stop="114083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTT</genome_strand>
        <mrna_strand>TGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301135" ref_strand="+" ref_description="SGN-E301135 [cLEW-22-C8]">
      <seq>aaagaaccccaagaatattcttacttttaattggagcagttgtggctgagggtattatacctctttatcacccatttaattggtacccagcagatttagcaacccaacatccctctgaaatttcacccaattaccatgctgctgaggagcaaaagataaagattaaagagccggagacatgcgatatcttcaccggcgaatgggtctggaatccggatgctccatattacacgaatatgacctgttatgcgatccatgaacaccaaaattgtatcaagtatgggagacccgatacggattatttgaagtggagatggaagcctaatgggtgtgagctacctattttcgacccgtttctgtttttagatttggttaggaacaaatcgttggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacctattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="-" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="116461" stop="113888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116161" g_stop="115710" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115709" i_stop="114346" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114345" g_stop="114188" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="610" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="-" ref_id="SGN-E301135" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116161" e_stop="115710"/>
          <exon e_start="114345" e_stop="114188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAA</genome_strand>
        <mrna_strand>AAAGAACCCCAAGAATATTCTTACTTTTAATTGGAGCAGTTGTGGCTGAGGGTATTATACCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACCTATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0108N03-0UvLM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0108N03.3" temp_strand="+" temp_description="C02HBa0108N03.3  AC215384.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0108N03 sequenced_by:kribb upload_account_name:korea">
        <position start="125360" stop="132613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125663" g_stop="125926" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="278" r_length="264" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125927" i_stop="126341" i_length="415">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126342" g_stop="126352" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="289" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0108N03.3" gen_strand="+" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0108N03.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125663" e_stop="125926"/>
          <exon e_start="126342" e_stop="126352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGCACAGGTGTACGGTAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAAGGTTAGATGGTTGATGATGAACGATTACGAAATGTTAAGAATGTTCAGCAAGTATGATTAAAGAATCAAAAATTCCAAATTTTCCGCTAAAATTAATCTATGTAAAGTAAGAATGACGTAAGTAGGCTTGTCTGCGACCTCTGAGAGGTCAACGACGCCGGTCTCGTCTGGGGTCTAGATTCCGGTCGTGACAAAGTTGGTATCAGAGCGCTAGGTTAAATTCCTAGAATAATGAGTTCACATCAACCACATTGAGTAGTTTCTAAGTCATGGTAGTGAAGTGCACCACTATCCTGGATTAGAGACTGCATGATGCGTAGGAAAAACTTCCCTTTTTCTGATCTTATCGTGCTTATCCTAATGTTTGAATTCTTGGTGTTATGAACGTGTCTAACATCAATCTTGTTGTTTTTCAGAGAATGAATAC</genome_strand>
        <mrna_strand>GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>75</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1775" PGL_stop="331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1775" e_stop="331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="1775" e_stop="331" e_length="1445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1775" stop="1474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1659" stop="1081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1118" stop="331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1118" stop="341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAACTTGTAGCTCAACGTCTTTTCGATTCATACAAAATTAGTCGTCCTTCCCTATCAACATGCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAGCCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGATCTCTCCACCGAAGCTCTTTGTTCCAATCATTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGGAATTGAGAGGGATGGACATTGGTAGAGATAGGATAAGACTGGATGCACTCATCTCACCGCCGCAACAAAAATTGTTGCCGGAGATTGAGTCAGAAGCCGAGGAGGAGAAATTCACGGTGGCGGATGCAAAGAAGGTTATGAGATTGGCACAACTGGAGGTGGTGAAATCGAGGCTGAGGCAGATGGAGAATGACTGGATTTCTTTTCCGGAATTTTTTCAGATCTGCAATGGCGCTTCTTCAAACTCCGATCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGTTGGTTTTCTATTATTTTTTTTTTCCGATTCATGCTTTTTCCCCTTATAAAATTTTCAATGTGGATTTCCATAACTTGCCATGATACAGATTTTACAAGATGTCTATGTGCATTATTGTACTGCTGAGAAGTATTGATAAGTTGTAACAAATATTACTACTTTTTTTTTTAGTTTGTGCATTACAAGTCTACCGAAAACTGATAGAATTTCATCTATTCTCTATGTTTTTCGACAGGAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGTGATAAGGCGCGTGAAGTGGAGTTCTATTGTTTTACCCAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGGTGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGATGA</gDNA_template>
            <first_frame> K  K  L  V  A  Q  R  L  F  D  S  Y  K  I  S  R  P  S  L  S  T  C  R  I  C  S  S  T  M  T  K  S  M  A  S  P  N  P  E  R  I  A  P  D  P  G  E  G  A  F  F  R  R  S  L  H  R  S  S  L  F  Q  S  L  A  T  S  S  E  L  R  S  F  P  I  G  E  K  L  R  Q  E  L  R  G  M  D  I  G  R  D  R  I  R  L  D  A  L  I  S  P  P  Q  Q  K  L  L  P  E  I  E  S  E  A  E  E  E  K  F  T  V  A  D  A  K  K  V  M  R  L  A  Q  L  E  V  V  K  S  R  L  R  Q  M  E  N  D  W  I  S  F  P  E  F  F  Q  I  C  N  G  A  S  S  N  S  D  Q  A  I  E  F  A  K  M  L  D  Q  S  G  I  V  L  V  L  G  N  V  V  F  L  K  P  D  K  V  G  F  L  L  F  F  F  S  D  S  C  F  F  P  L  *  N  F  Q  C  G  F  P  *  L  A  M  I  Q  I  L  Q  D  V  Y  V  H  Y  C  T  A  E  K  Y  *  *  V  V  T  N  I  T  T  F  F  F  S  L  C  I  T  S  L  P  K  T  D  R  I  S  S  I  L  Y  V  F  R  Q  E  S  Q  Q  S  Y  S  R  S  L  K  R  D  G  D  F  Y  K  G  L  H  Q  L  D  H  F  Q  T  P  Q  L  T  P  L  N  T  P  F  P  L  N  S  K  H  L  G  R  K  *  C  L  S  *  K  V  F  F  A  K  T  E  I  V  I  Y  *  N  F  F  K  L  I  V  W  W  R  R  G  S  I  E  S  K  N  *  *  I  L  P  Q  K  E  T  K  Y  S  Y  S  L  S  T  L  Q  L  L  *  L  C  F  L  I  L  D  A  S  D  N  L  P  S  L  S  *  E  F  R  I  L  S  L  C  L  S  A  C  V  I  V  S  D  N  I  D  *  L  A  N  P  I  *  M  N  A  C  K  *  E  D  V  S  H  L  I  M  *  *  G  A  *  S  G  V  L  L  F  Y  P  S  I  L  V  P  C  F  V  A  T  G  G  E  S  H  G  R  L  N  A  K  A  F  G  S  A  K  *  P  T  N  D   </first_frame>
            <second_frame>  K  N  L  *  L  N  V  F  S  I  H  T  K  L  V  V  L  P  Y  Q  H  A  V  F  V  P  Q  P  *  P  N  R  W  L  L  L  I  L  K  G  *  P  Q  I  P  A  R  V  L  F  S  V  D  L  S  T  E  A  L  C  S  N  H  *  Q  P  R  R  S  S  G  L  F  P  S  V  K  S  S  V  R  N  *  E  G  W  T  L  V  E  I  G  *  D  W  M  H  S  S  H  R  R  N  K  N  C  C  R  R  L  S  Q  K  P  R  R  R  N  S  R  W  R  M  Q  R  R  L  *  D  W  H  N  W  R  W  *  N  R  G  *  G  R  W  R  M  T  G  F  L  F  R  N  F  F  R  S  A  M  A  L  L  Q  T  P  I  K  P  *  N  S  Q  R  C  S  I  N  Q  E  L  Y  L  F  W  E  T  S  Y  S  L  S  L  I  R  L  V  F  Y  Y  F  F  F  P  I  H  A  F  S  P  Y  K  I  F  N  V  D  F  H  N  L  P  *  Y  R  F  Y  K  M  S  M  C  I  I  V  L  L  R  S  I  D  K  L  *  Q  I  L  L  L  F  F  L  V  C  A  L  Q  V  Y  R  K  L  I  E  F  H  L  F  S  M  F  F  D  R  K  A  N  K  V  I  P  D  L  *  N  E  M  V  T  F  I  R  D  C  T  S  W  T  I  S  K  H  P  N  L  H  H  *  T  H  P  F  L  L  I  P  N  I  W  E  E  N  N  V  C  P  K  K  C  F  L  Q  K  L  K  L  L  F  T  E  T  F  L  S  *  *  F  G  G  E  E  V  P  *  S  P  K  I  S  K  S  Y  P  R  R  K  R  N  T  A  I  P  F  P  L  Y  S  S  S  S  C  V  F  *  Y  L  T  Q  V  T  I  C  L  P  C  H  R  N  S  E  F  *  V  C  V  *  V  R  A  *  L  C  L  I  I  *  I  N  *  R  I  Q  F  R  *  M  L  A  N  E  K  M  F  L  I  S  L  C  D  K  A  R  E  V  E  F  Y  C  F  T  Q  A  F  W  S  L  V  L  L  L  Q  V  V  K  A  M  E  G  L  M  P  R  P  L  A  Q  P  N  D  P  Q  M  M  </second_frame>
            <third_frame>   K  T  C  S  S  T  S  F  R  F  I  Q  N  *  S  S  F  P  I  N  M  P  Y  L  F  L  N  H  D  Q  I  D  G  F  S  *  S  *  K  D  S  P  R  S  R  R  G  C  F  F  P  S  I  S  P  P  K  L  F  V  P  I  I  S  N  L  V  G  A  P  V  F  S  H  R  *  K  A  P  S  G  I  E  R  D  G  H  W  *  R  *  D  K  T  G  C  T  H  L  T  A  A  T  K  I  V  A  G  D  *  V  R  S  R  G  G  E  I  H  G  G  G  C  K  E  G  Y  E  I  G  T  T  G  G  G  E  I  E  A  E  A  D  G  E  *  L  D  F  F  S  G  I  F  S  D  L  Q  W  R  F  F  K  L  R  S  S  H  R  I  R  K  D  A  R  S  I  R  N  C  T  C  F  G  K  R  R  I  P  *  A  *  *  G  W  F  S  I  I  F  F  F  R  F  M  L  F  P  L  I  K  F  S  M  W  I  S  I  T  C  H  D  T  D  F  T  R  C  L  C  A  L  L  Y  C  *  E  V  L  I  S  C  N  K  Y  Y  Y  F  F  F  *  F  V  H  Y  K  S  T  E  N  *  *  N  F  I  Y  S  L  C  F  S  T  G  K  P  T  K  L  F  Q  I  S  K  T  R  W  *  L  L  *  G  T  A  P  V  G  P  F  P  N  T  P  T  Y  T  I  E  H  T  L  S  S  *  F  Q  T  F  G  K  K  I  M  F  V  L  K  S  V  F  C  K  N  *  N  C  Y  L  L  K  L  F  *  A  N  S  L  V  E  K  R  F  H  R  V  Q  K  L  V  N  P  T  P  E  G  N  E  I  Q  L  F  P  F  H  F  T  A  P  L  V  V  F  S  N  T  *  R  K  *  Q  F  A  F  L  V  I  G  I  Q  N  F  K  F  V  S  K  C  V  R  D  C  V  *  *  Y  R  L  I  S  E  S  N  L  D  E  C  L  Q  M  R  R  C  F  S  S  H  Y  V  I  R  R  V  K  W  S  S  I  V  L  P  K  H  F  G  P  L  F  C  C  Y  R  W  *  K  P  W  K  A  *  C  Q  G  L  W  L  S  Q  M  T  H  K  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1775" stop="1146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKLVAQRLFDSYKISRPSLSTCRICSSTMTKSMASPNPERIAPDPGEGAFFRRSLHRSSLFQSLATSSELRSFPIGEKLRQELRGMDIGRDRIRLDALISPPQQKLLPEIESEAEEEKFTVADAKKVMRLAQLEVVKSRLRQMENDWISFPEFFQICNGASSNSDQAIEFAKMLDQSGIVLVLGNVVFLKPDKVGFLLFFFSDSCFFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1055" stop="813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVTNITTFFFSLCITSLPKTDRISSILYVFRQESQQSYSRSLKRDGDFYKGLHQLDHFQTPQLTPLNTPFPLNSKHLGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1281" e_stop="1197"/>
            <exon e_start="959" e_stop="467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.895" e_score="0.953"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="1281" e_stop="1197" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.895">
            <gDNA_intron_boundary i_start="1196" i_stop="960" i_length="237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="959" e_stop="467" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1281" stop="1197"/>
              <exon start="959" stop="467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCCATAGAATTCGCAAAGATGCTCGATCAATCAGGAATTGTACTTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAG : GAAAGCCAACAAAGTTATTCCAGATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAACACCCCAACTTACACCATTGAACACACCCTTTCCTCTTAATTCCAAACATTTGGGAAGAAAATAATGTTTGTCCTAAAAAGTGTTTTTTGCAAAAACTGAAATTGTTATTTACTGAAACTTTTTTAAGCTAATAGTTTGGTGGAGAAGAGGTTCCATAGAGTCCAAAAATTAGTAAATCCTACCCCAGAAGGAAACGAAATACAGCTATTCCCTTTCCACTTTACAGCTCCTCTAGTTGTGTTTTCTAATACTTGACGCAAGTGACAATTTGCCTTCCTTGTCATAGGAATTCAGAATTTTAAGTTTGTGTCTAAGTGCGTGCGTGATTGTGTCTGATAATATAGATTAATTAGCGAATCCAATTTAGATGAATGCTTGCAAATGAGAAGATGTTTCTCATCTCATTATGT</gDNA_template>
            <first_frame> S  S  H  R  I  R  K  D  A  R  S  I  R  N  C  T  C  F  G  K  R  R  I  P  *  A  *  *   : G  K  P  T  K  L  F  Q  I  S  K  T  R  W  *  L  L  *  G  T  A  P  V  G  P  F  P  N  T  P  T  Y  T  I  E  H  T  L  S  S  *  F  Q  T  F  G  K  K  I  M  F  V  L  K  S  V  F  C  K  N  *  N  C  Y  L  L  K  L  F  *  A  N  S  L  V  E  K  R  F  H  R  V  Q  K  L  V  N  P  T  P  E  G  N  E  I  Q  L  F  P  F  H  F  T  A  P  L  V  V  F  S  N  T  *  R  K  *  Q  F  A  F  L  V  I  G  I  Q  N  F  K  F  V  S  K  C  V  R  D  C  V  *  *  Y  R  L  I  S  E  S  N  L  D  E  C  L  Q  M  R  R  C  F  S  S  H  Y   </first_frame>
            <second_frame>  Q  A  I  E  F  A  K  M  L  D  Q  S  G  I  V  L  V  L  G  N  V  V  F  L  K  P  D  K  :  E  S  Q  Q  S  Y  S  R  S  L  K  R  D  G  D  F  Y  K  G  L  H  Q  L  D  H  F  Q  T  P  Q  L  T  P  L  N  T  P  F  P  L  N  S  K  H  L  G  R  K  *  C  L  S  *  K  V  F  F  A  K  T  E  I  V  I  Y  *  N  F  F  K  L  I  V  W  W  R  R  G  S  I  E  S  K  N  *  *  I  L  P  Q  K  E  T  K  Y  S  Y  S  L  S  T  L  Q  L  L  *  L  C  F  L  I  L  D  A  S  D  N  L  P  S  L  S  *  E  F  R  I  L  S  L  C  L  S  A  C  V  I  V  S  D  N  I  D  *  L  A  N  P  I  *  M  N  A  C  K  *  E  D  V  S  H  L  I  M  </second_frame>
            <third_frame>   K  P  *  N  S  Q  R  C  S  I  N  Q  E  L  Y  L  F  W  E  T  S  Y  S  L  S  L  I  R :   K  A  N  K  V  I  P  D  L  *  N  E  M  V  T  F  I  R  D  C  T  S  W  T  I  S  K  H  P  N  L  H  H  *  T  H  P  F  L  L  I  P  N  I  W  E  E  N  N  V  C  P  K  K  C  F  L  Q  K  L  K  L  L  F  T  E  T  F  L  S  *  *  F  G  G  E  E  V  P  *  S  P  K  I  S  K  S  Y  P  R  R  K  R  N  T  A  I  P  F  P  L  Y  S  S  S  S  C  V  F  *  Y  L  T  Q  V  T  I  C  L  P  C  H  R  N  S  E  F  *  V  C  V  *  V  R  A  *  L  C  L  I  I  *  I  N  *  R  I  Q  F  R  *  M  L  A  N  E  K  M  F  L  I  S  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1280" stop="1197"/>
                    <exon start="959" stop="813"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAIEFAKMLDQSGIVLVLGNVVFLKPDKESQQSYSRSLKRDGDFYKGLHQLDHFQTPQLTPLNTPFPLNSKHLGRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39101" PGL_stop="42302"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39101" e_stop="39288" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41500" e_stop="41758" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39109" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39114" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39115" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39115" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39118" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39145" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39147" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39172" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39183" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39229" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40331" stop="40407"/>
              <exon start="41500" stop="41754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40336" stop="40407"/>
              <exon start="41500" stop="41749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTA</gDNA_template>
            <first_frame> K  D  L  F  P  *  I  T  L  T  E  Q  E  E  E  E  D  V  E  E  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *  Y  Q  L  D  L  E  T  R  N  *  C  C  F  *  L  F  Y  F  L  P  I  </first_frame>
            <second_frame>  K  I  C  F  L  E  L  L  L  Q  S  K  K  K  K  K  T  *  K  S  N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  I  S  L  I  W  K  H  V  I  N  V  V  F  S  F  S  I  F  F  Q  L </second_frame>
            <third_frame>   R  F  V  S  L  N  Y  S  Y  R  A  R  R  R  R  R  R  R  R  A  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I  S  A  *  F  G  N  T  *  L  M  L  F  L  A  F  L  F  S  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39103" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVSLNYSYRARRRRRRRRAMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41748"/>
            <exon e_start="42280" e_stop="42302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.238" e_score="1.000"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39101" e_stop="39288" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41500" e_stop="41748" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.238">
            <gDNA_intron_boundary i_start="41749" i_stop="42279" i_length="531"/>
          </intron>
          <exon e_serial="5" e_score="0.739">
            <gDNA_exon_boundary e_start="42280" e_stop="42302" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39109" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39114" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39115" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39115" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39118" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39145" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39147" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39183" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39423" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41748"/>
              <exon start="42280" stop="42302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTT : CATCCACCATTAAAAAAAAAGAA</gDNA_template>
            <first_frame> K  D  L  F  P  *  I  T  L  T  E  Q  E  E  E  E  D  V  E  E  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *  Y  Q  L  D  L  E  T  R  N  *  C  C  F  *  L  F  Y  F  :  H  P  P  L  K  K  K   </first_frame>
            <second_frame>  K  I  C  F  L  E  L  L  L  Q  S  K  K  K  K  K  T  *  K  S  N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  I  S  L  I  W  K  H  V  I  N  V  V  F  S  F  S  I  F :   I  H  H  *  K  K  R  </second_frame>
            <third_frame>   R  F  V  S  L  N  Y  S  Y  R  A  R  R  R  R  R  R  R  R  A  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I  S  A  *  F  G  N  T  *  L  M  L  F  L  A  F  L  F   : S  S  T  I  K  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39103" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVSLNYSYRARRRRRRRRAMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41725"/>
            <exon e_start="41786" e_stop="41790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39101" e_stop="39288" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41500" e_stop="41725" e_length="226"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="41726" i_stop="41785" i_length="60"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="41786" e_stop="41790" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39114" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39147" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41725"/>
              <exon start="41786" stop="41790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612828" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAAT : AAAAC</gDNA_template>
            <first_frame> K  D  L  F  P  *  I  T  L  T  E  Q  E  E  E  E  D  V  E  E  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *  Y  Q  L  D  L  E  T  R  N  *   : *  N </first_frame>
            <second_frame>  K  I  C  F  L  E  L  L  L  Q  S  K  K  K  K  K  T  *  K  S  N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  I  S  L  I  W  K  H  V  I  N  :  K   </second_frame>
            <third_frame>   R  F  V  S  L  N  Y  S  Y  R  A  R  R  R  R  R  R  R  R  A  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I  S  A  *  F  G  N  T  *  L  I :   K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39103" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVSLNYSYRARRRRRRRRAMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41716"/>
            <exon e_start="41918" e_stop="41937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.165" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39101" e_stop="39288" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41500" e_stop="41716" e_length="217"/>
          </exon>
          <intron i_serial="4" don_prob="0.165" acc_prob="0.950">
            <gDNA_intron_boundary i_start="41717" i_stop="41917" i_length="201"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="41918" e_stop="41937" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39114" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39116" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39137" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39159" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39165" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41716"/>
              <exon start="41918" stop="41937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACAC : GGTAAAAGGAAGCAGCATAA</gDNA_template>
            <first_frame> K  D  L  F  P  *  I  T  L  T  E  Q  E  E  E  E  D  V  E  E  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *  Y  Q  L  D  L  E  T   : R  *  K  E  A  A  * </first_frame>
            <second_frame>  K  I  C  F  L  E  L  L  L  Q  S  K  K  K  K  K  T  *  K  S  N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  I  S  L  I  W  K  H  :  G  K  R  K  Q  H   </second_frame>
            <third_frame>   R  F  V  S  L  N  Y  S  Y  R  A  R  R  R  R  R  R  R  R  A  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I  S  A  *  F  G  N  T :   V  K  G  S  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39103" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVSLNYSYRARRRRRRRRAMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39108"/>
            <exon e_start="39161" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41758"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.750"/>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="39101" e_stop="39108" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39109" i_stop="39160" i_length="52"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39161" e_stop="39288" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41500" e_stop="41758" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39108"/>
              <exon start="39161" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39166" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39172" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39183" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39229" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40331" stop="40407"/>
              <exon start="41500" stop="41754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40336" stop="40407"/>
              <exon start="41500" stop="41749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586462" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTT : CAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAATATCAGCTTGATTTGGAAACACGTAATTAATGTTGTTTTTAGCTTTTCTATTTTCTTCCAATTA</gDNA_template>
            <first_frame> K  D  F :   N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  I  S  L  I  W  K  H  V  I  N  V  V  F  S  F  S  I  F  F  Q  L </first_frame>
            <second_frame>  K  I   : S  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I  S  A  *  F  G  N  T  *  L  M  L  F  L  A  F  L  F  S  S  N   </second_frame>
            <third_frame>   R  F  :  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *  Y  Q  L  D  L  E  T  R  N  *  C  C  F  *  L  F  Y  F  L  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39102" stop="39108"/>
                    <exon start="39161" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="39101" e_stop="39288"/>
            <exon e_start="39366" e_stop="39466"/>
            <exon e_start="40310" e_stop="40407"/>
            <exon e_start="41500" e_stop="41695"/>
            <exon e_start="41786" e_stop="41810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="0.995"/>
          <exon-only e_score="0.480"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39101" e_stop="39288" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.808">
            <gDNA_intron_boundary i_start="39289" i_stop="39365" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39366" e_stop="39466" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39467" i_stop="40309" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40310" e_stop="40407" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40408" i_stop="41499" i_length="1092"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="41500" e_stop="41695" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="41696" i_stop="41785" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.480">
            <gDNA_exon_boundary e_start="41786" e_stop="41810" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41695"/>
              <exon start="41786" stop="41810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39101" stop="39288"/>
              <exon start="39366" stop="39466"/>
              <exon start="40310" stop="40407"/>
              <exon start="41500" stop="41645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGTTTCCTTGAATTACTCTTACAGAGCAAGAAGAAGAAGAAGACGTAGAAGAGCAATGGAAGATTCAAAGAAGATCGCACACGAAATTGGAGGAGTGAGAAACGATGCGTTTCGATTCGGGCTTCATGGTGTTAAGAGCGACATCGTCGGATCTCATCCTCTCGAGTCTGCTTATCACTCT : ACGAAGGCTAGGCAATACGAAATGAAGAGGAAGATACTTGCAAACACCTACGGGTCGGCTTTCCCTATGAAGTTAGAGCTCGATCGCCAAATTCTTTCGAG : ATTTCAGAGGCCACCAGGGGCAATACCATCTTCAATGATTGGGTTAGAATCCCTAACCGGAGGTCTAGAGGACTTTGCTTTTGAGGACTACCTGAATG : ATCCTAAGGAATCTGAGAGCTTTCGTCCAGTTGACATGCATCATGGCGTGGAAGTTCGCCTTGGGCTTTCCAAGGGACCTGTGTGTCCCAGTTTCATTTGAATCCTTTGCAATTGATTGAGAAACTCTGTAACTTGTAATACTGCTGCTGTGTACTTGTCGTCTCCTATAAGCCTTGTGTCTTGGGTATTTTTAAT : AAAACCAGCACCAGTAGCCAGACTC</gDNA_template>
            <first_frame> K  D  L  F  P  *  I  T  L  T  E  Q  E  E  E  E  D  V  E  E  Q  W  K  I  Q  R  R  S  H  T  K  L  E  E  *  E  T  M  R  F  D  S  G  F  M  V  L  R  A  T  S  S  D  L  I  L  S  S  L  L  I  T  L :   R  R  L  G  N  T  K  *  R  G  R  Y  L  Q  T  P  T  G  R  L  S  L  *  S  *  S  S  I  A  K  F  F  R   : D  F  R  G  H  Q  G  Q  Y  H  L  Q  *  L  G  *  N  P  *  P  E  V  *  R  T  L  L  L  R  T  T  *  M  :  I  L  R  N  L  R  A  F  V  Q  L  T  C  I  M  A  W  K  F  A  L  G  F  P  R  D  L  C  V  P  V  S  F  E  S  F  A  I  D  *  E  T  L  *  L  V  I  L  L  L  C  T  C  R  L  L  *  A  L  C  L  G  Y  F  *   : *  N  Q  H  Q  *  P  D   </first_frame>
            <second_frame>  K  I  C  F  L  E  L  L  L  Q  S  K  K  K  K  K  T  *  K  S  N  G  R  F  K  E  D  R  T  R  N  W  R  S  E  K  R  C  V  S  I  R  A  S  W  C  *  E  R  H  R  R  I  S  S  S  R  V  C  L  S  L   : Y  E  G  *  A  I  R  N  E  E  E  D  T  C  K  H  L  R  V  G  F  P  Y  E  V  R  A  R  S  P  N  S  F  E  :  I  S  E  A  T  R  G  N  T  I  F  N  D  W  V  R  I  P  N  R  R  S  R  G  L  C  F  *  G  L  P  E  * :   S  *  G  I  *  E  L  S  S  S  *  H  A  S  W  R  G  S  S  P  W  A  F  Q  G  T  C  V  S  Q  F  H  L  N  P  L  Q  L  I  E  K  L  C  N  L  *  Y  C  C  C  V  L  V  V  S  Y  K  P  C  V  L  G  I  F  N  :  K  T  S  T  S  S  Q  T  </second_frame>
            <third_frame>   R  F  V  S  L  N  Y  S  Y  R  A  R  R  R  R  R  R  R  R  A  M  E  D  S  K  K  I  A  H  E  I  G  G  V  R  N  D  A  F  R  F  G  L  H  G  V  K  S  D  I  V  G  S  H  P  L  E  S  A  Y  H  S  :  T  K  A  R  Q  Y  E  M  K  R  K  I  L  A  N  T  Y  G  S  A  F  P  M  K  L  E  L  D  R  Q  I  L  S  R :   F  Q  R  P  P  G  A  I  P  S  S  M  I  G  L  E  S  L  T  G  G  L  E  D  F  A  F  E  D  Y  L  N   : D  P  K  E  S  E  S  F  R  P  V  D  M  H  H  G  V  E  V  R  L  G  L  S  K  G  P  V  C  P  S  F  I  *  I  L  C  N  *  L  R  N  S  V  T  C  N  T  A  A  V  Y  L  S  S  P  I  S  L  V  S  W  V  F  L  I :   K  P  A  P  V  A  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39103" stop="39288"/>
                    <exon start="39366" stop="39466"/>
                    <exon start="40310" stop="40407"/>
                    <exon start="41500" stop="41600"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFVSLNYSYRARRRRRRRRAMEDSKKIAHEIGGVRNDAFRFGLHGVKSDIVGSHPLESAYHSTKARQYEMKRKILANTYGSAFPMKLELDRQILSRFQRPPGAIPSSMIGLESLTGGLEDFAFEDYLNDPKESESFRPVDMHHGVEVRLGLSKGPVCPSFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42374" PGL_stop="42973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42374" e_stop="42973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="42374" e_stop="42973" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42374" stop="42973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACTGTAAAACTCACGCAGCGCACAAACCCTGCCAACCTGAAACCCCCATCTCTGATTCTATTCTATCCCCTTAACTAAACCCTAGATTTCTTCTTCTTCTTCCATCGCTACTCTCTCCTCCATGGATTCTCGCCGTGTTCCTCGAACTGTGAGCGACCCTAAGGTTCGTCAAGTCGGGTTCTTTGCTCCACCCGACCGATCCCAATCGGGTCCTTTCATCCCATTTTCCTCTTCCCCTCCTGTTTCCGATCTATCCCCTTCCGGTAACTCTCTTTCCCCTGTTATGATCCCTCCTCCTCGTCATCTCTCCGTCGACGTATCCCTACCCCGTCCCGCTAATCTTCATCCGGCACCCTTGTCCCCTCTACGACATGATTCTATCCCCGTCGGAAGCTACAATCCATCTGAATTCACTTCTCCTACTACCACTAACTTAGCTGATGATAACTCCTCTCCTGGCTGGCATCGCAGGGGCAGTTCTGGTAAATTTGCTACTTCTCTTCCCTCTGCAGGATTTGAGCTGCCTGCTGCCAAGCAGAACAGCTTTACTGCCTCCAGATTGACTACAGTCTCCAACGTGAATGCGACTTTGGGATTA</gDNA_template>
            <first_frame> A  L  *  N  S  R  S  A  Q  T  L  P  T  *  N  P  H  L  *  F  Y  S  I  P  L  T  K  P  *  I  S  S  S  S  S  I  A  T  L  S  S  M  D  S  R  R  V  P  R  T  V  S  D  P  K  V  R  Q  V  G  F  F  A  P  P  D  R  S  Q  S  G  P  F  I  P  F  S  S  S  P  P  V  S  D  L  S  P  S  G  N  S  L  S  P  V  M  I  P  P  P  R  H  L  S  V  D  V  S  L  P  R  P  A  N  L  H  P  A  P  L  S  P  L  R  H  D  S  I  P  V  G  S  Y  N  P  S  E  F  T  S  P  T  T  T  N  L  A  D  D  N  S  S  P  G  W  H  R  R  G  S  S  G  K  F  A  T  S  L  P  S  A  G  F  E  L  P  A  A  K  Q  N  S  F  T  A  S  R  L  T  T  V  S  N  V  N  A  T  L  G  L </first_frame>
            <second_frame>  H  C  K  T  H  A  A  H  K  P  C  Q  P  E  T  P  I  S  D  S  I  L  S  P  *  L  N  P  R  F  L  L  L  L  P  S  L  L  S  P  P  W  I  L  A  V  F  L  E  L  *  A  T  L  R  F  V  K  S  G  S  L  L  H  P  T  D  P  N  R  V  L  S  S  H  F  P  L  P  L  L  F  P  I  Y  P  L  P  V  T  L  F  P  L  L  *  S  L  L  L  V  I  S  P  S  T  Y  P  Y  P  V  P  L  I  F  I  R  H  P  C  P  L  Y  D  M  I  L  S  P  S  E  A  T  I  H  L  N  S  L  L  L  L  P  L  T  *  L  M  I  T  P  L  L  A  G  I  A  G  A  V  L  V  N  L  L  L  L  F  P  L  Q  D  L  S  C  L  L  P  S  R  T  A  L  L  P  P  D  *  L  Q  S  P  T  *  M  R  L  W  D   </second_frame>
            <third_frame>   T  V  K  L  T  Q  R  T  N  P  A  N  L  K  P  P  S  L  I  L  F  Y  P  L  N  *  T  L  D  F  F  F  F  F  H  R  Y  S  L  L  H  G  F  S  P  C  S  S  N  C  E  R  P  *  G  S  S  S  R  V  L  C  S  T  R  P  I  P  I  G  S  F  H  P  I  F  L  F  P  S  C  F  R  S  I  P  F  R  *  L  S  F  P  C  Y  D  P  S  S  S  S  S  L  R  R  R  I  P  T  P  S  R  *  S  S  S  G  T  L  V  P  S  T  T  *  F  Y  P  R  R  K  L  Q  S  I  *  I  H  F  S  Y  Y  H  *  L  S  *  *  *  L  L  S  W  L  A  S  Q  G  Q  F  W  *  I  C  Y  F  S  S  L  C  R  I  *  A  A  C  C  Q  A  E  Q  L  Y  C  L  Q  I  D  Y  S  L  Q  R  E  C  D  F  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42461" stop="42973"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSSSSIATLSSMDSRRVPRTVSDPKVRQVGFFAPPDRSQSGPFIPFSSSPPVSDLSPSGNSLSPVMIPPPRHLSVDVSLPRPANLHPAPLSPLRHDSIPVGSYNPSEFTSPTTTNLADDNSSPGWHRRGSSGKFATSLPSAGFELPAAKQNSFTASRLTTVSNVNATLGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="44903" PGL_stop="46029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44903" e_stop="45049"/>
            <exon e_start="45417" e_stop="46029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.986"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="44903" e_stop="45049" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45050" i_stop="45416" i_length="367"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="45417" e_stop="46029" e_length="613"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44903" stop="45049"/>
              <exon start="45417" stop="46029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAGCGCTCAGTAGTGAAGCAAATTGAAGCCAAAAACAGGGTTGAACTTTTTAGGCATTTGCCTCAGTATGAACATGGAACAAGACTTCCCGAGCTTGAATCAAAGTTCTTCCAGCTAGATCCAGTTCATCCTGCTGTTTTTAAG : GTTGGACTTAGATATTTGGCTGGAGATATATCTGGTGGTAATGCCCGCTGTATTGCTATGCTTCAAGCTTTCCAAGAGTCCATCAAAGACTACTCAACTCCCGCGGAGAAAGCTCTTATAAGAGACTTGACTGCAAAAGTTAATTGTTATGTTTCATTTTTGATCGAGTGCAGGCCCCTCTCAATCAGCATGGGGAATGCTATTAGGTTCCTTAAAACTAGAATTGCGAAATTGCCTTTGACTTTGTCAGAGTCAGAAGCTAAAACCACTCTTGTGACAGATATTGATCACTTCATAAGTGAAAAGATAATACTTGCAGACAAGGTGATAGTCAAGCATGCGGTAACTAAAATAAGTGATGGTGACGTTCTTCTCACTTATGGATCCTCCTCTGCTGTTGAAATGATTCTGTTACATGCGCATGAGCTTGGCAAGGATTTCCGTGTCATAGTAGTTGACTCACGTCCAAAGCTTGAAGGGAGATTACTACTTCGTCGGTTGGTGGGGAAGGGTGTTAAGTGTACATACACTCATATAAATGCCATTTCTTATATCATGCATGAAGTTACAAGAGTACTTTTGGGTGCTTCATCAGTTTTGTCCAATGGAACTG</gDNA_template>
            <first_frame> K  K  R  S  V  V  K  Q  I  E  A  K  N  R  V  E  L  F  R  H  L  P  Q  Y  E  H  G  T  R  L  P  E  L  E  S  K  F  F  Q  L  D  P  V  H  P  A  V  F  K  :  V  G  L  R  Y  L  A  G  D  I  S  G  G  N  A  R  C  I  A  M  L  Q  A  F  Q  E  S  I  K  D  Y  S  T  P  A  E  K  A  L  I  R  D  L  T  A  K  V  N  C  Y  V  S  F  L  I  E  C  R  P  L  S  I  S  M  G  N  A  I  R  F  L  K  T  R  I  A  K  L  P  L  T  L  S  E  S  E  A  K  T  T  L  V  T  D  I  D  H  F  I  S  E  K  I  I  L  A  D  K  V  I  V  K  H  A  V  T  K  I  S  D  G  D  V  L  L  T  Y  G  S  S  S  A  V  E  M  I  L  L  H  A  H  E  L  G  K  D  F  R  V  I  V  V  D  S  R  P  K  L  E  G  R  L  L  L  R  R  L  V  G  K  G  V  K  C  T  Y  T  H  I  N  A  I  S  Y  I  M  H  E  V  T  R  V  L  L  G  A  S  S  V  L  S  N  G  T  </first_frame>
            <second_frame>  R  S  A  Q  *  *  S  K  L  K  P  K  T  G  L  N  F  L  G  I  C  L  S  M  N  M  E  Q  D  F  P  S  L  N  Q  S  S  S  S  *  I  Q  F  I  L  L  F  L  R :   L  D  L  D  I  W  L  E  I  Y  L  V  V  M  P  A  V  L  L  C  F  K  L  S  K  S  P  S  K  T  T  Q  L  P  R  R  K  L  L  *  E  T  *  L  Q  K  L  I  V  M  F  H  F  *  S  S  A  G  P  S  Q  S  A  W  G  M  L  L  G  S  L  K  L  E  L  R  N  C  L  *  L  C  Q  S  Q  K  L  K  P  L  L  *  Q  I  L  I  T  S  *  V  K  R  *  Y  L  Q  T  R  *  *  S  S  M  R  *  L  K  *  V  M  V  T  F  F  S  L  M  D  P  P  L  L  L  K  *  F  C  Y  M  R  M  S  L  A  R  I  S  V  S  *  *  L  T  H  V  Q  S  L  K  G  D  Y  Y  F  V  G  W  W  G  R  V  L  S  V  H  T  L  I  *  M  P  F  L  I  S  C  M  K  L  Q  E  Y  F  W  V  L  H  Q  F  C  P  M  E  L </second_frame>
            <third_frame>   E  A  L  S  S  E  A  N  *  S  Q  K  Q  G  *  T  F  *  A  F  A  S  V  *  T  W  N  K  T  S  R  A  *  I  K  V  L  P  A  R  S  S  S  S  C  C  F  *   : G  W  T  *  I  F  G  W  R  Y  I  W  W  *  C  P  L  Y  C  Y  A  S  S  F  P  R  V  H  Q  R  L  L  N  S  R  G  E  S  S  Y  K  R  L  D  C  K  S  *  L  L  C  F  I  F  D  R  V  Q  A  P  L  N  Q  H  G  E  C  Y  *  V  P  *  N  *  N  C  E  I  A  F  D  F  V  R  V  R  S  *  N  H  S  C  D  R  Y  *  S  L  H  K  *  K  D  N  T  C  R  Q  G  D  S  Q  A  C  G  N  *  N  K  *  W  *  R  S  S  H  L  W  I  L  L  C  C  *  N  D  S  V  T  C  A  *  A  W  Q  G  F  P  C  H  S  S  *  L  T  S  K  A  *  R  E  I  T  T  S  S  V  G  G  E  G  C  *  V  Y  I  H  S  Y  K  C  H  F  L  Y  H  A  *  S  Y  K  S  T  F  G  C  F  I  S  F  V  Q  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44903" stop="45049"/>
                    <exon start="45417" stop="46028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRSVVKQIEAKNRVELFRHLPQYEHGTRLPELESKFFQLDPVHPAVFKVGLRYLAGDISGGNARCIAMLQAFQESIKDYSTPAEKALIRDLTAKVNCYVSFLIECRPLSISMGNAIRFLKTRIAKLPLTLSESEAKTTLVTDIDHFISEKIILADKVIVKHAVTKISDGDVLLTYGSSSAVEMILLHAHELGKDFRVIVVDSRPKLEGRLLLRRLVGKGVKCTYTHINAISYIMHEVTRVLLGASSVLSNGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45989" PGL_stop="45661"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45989" e_stop="45661"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="45989" e_stop="45661" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45989" stop="45661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTAACTTCATGCATGATATAAGAAATGGCATTTATATGAGTGTATGTACACTTAACACCCTTCCCCACCAACCGACGAAGTAGTAATCTCCCTTCAAGCTTTGGACGTGAGTCAACTACTATGACACGGAAATCCTTGCCAAGCTCATGCGCATGTAACAGAATCATTTCAACAGCAGAGGAGGATCCATAAGTGAGAAGAACGTCACCATCACTTATTTTAGTTACCGCATGCTTGACTATCACCTTGTCTGCAAGTATTATCTTTTCACTTATGAAGTGATCAATATCTGTCACAAGAGTGGTTTTAGCTTCTGACTCTGACA</gDNA_template>
            <first_frame> S  C  N  F  M  H  D  I  R  N  G  I  Y  M  S  V  C  T  L  N  T  L  P  H  Q  P  T  K  *  *  S  P  F  K  L  W  T  *  V  N  Y  Y  D  T  E  I  L  A  K  L  M  R  M  *  Q  N  H  F  N  S  R  G  G  S  I  S  E  K  N  V  T  I  T  Y  F  S  Y  R  M  L  D  Y  H  L  V  C  K  Y  Y  L  F  T  Y  E  V  I  N  I  C  H  K  S  G  F  S  F  *  L  *   </first_frame>
            <second_frame>  L  V  T  S  C  M  I  *  E  M  A  F  I  *  V  Y  V  H  L  T  P  F  P  T  N  R  R  S  S  N  L  P  S  S  F  G  R  E  S  T  T  M  T  R  K  S  L  P  S  S  C  A  C  N  R  I  I  S  T  A  E  E  D  P  *  V  R  R  T  S  P  S  L  I  L  V  T  A  C  L  T  I  T  L  S  A  S  I  I  F  S  L  M  K  *  S  I  S  V  T  R  V  V  L  A  S  D  S  D  </second_frame>
            <third_frame>   L  *  L  H  A  *  Y  K  K  W  H  L  Y  E  C  M  Y  T  *  H  P  S  P  P  T  D  E  V  V  I  S  L  Q  A  L  D  V  S  Q  L  L  *  H  G  N  P  C  Q  A  H  A  H  V  T  E  S  F  Q  Q  Q  R  R  I  H  K  *  E  E  R  H  H  H  L  F  *  L  P  H  A  *  L  S  P  C  L  Q  V  L  S  F  H  L  *  S  D  Q  Y  L  S  Q  E  W  F  *  L  L  T  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0108N03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="52518" PGL_stop="53238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52518" e_stop="53238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="52518" e_stop="53238" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52518" stop="53050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52531" stop="53238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATGTAAGAGCTGAGCTTGAAAAGCAACAGATCAAGATTAGTGAGGGTACAGAACAACTTAAAATAACTGAAGATGAGAGAATGGAACATTCTCGCCTACAATCAGAACTGAAGCAGGAGATAGTTAAGTGTAGACTCCTCCGAGAAGATCTATTGAAGGAAGCTGAAGATTTGAAGCAGGAAAAAGAAAGATTTGAGAGAGAATGGGAAGAACTAGATGAGAAAAGATCTGAGATCAAGATAGACTTGCAGGAACTTAATGAACGGAGAGAGAATTTAGAAAAACTGAAGCGCAGTGAAGAGGAAAGGATAAGCAAGGAGAAGCTGGAAACAGACAATTATGTCCAGATGGAGTTGGAAGCCCTTAGAGTGGCAAGAGAAACATTTGAAGCTACCATGGATCATGAGAAGTCAATATTAGCCGAGGAAACTCGAAGTGAGAAAAGCCAGATGCTTCATGCTTATGAACAGCAGAAAAGGGAACTTGAAAGTGATATGCAGAGGAAGCAGGAGGAAATGGAGTCTGCACTGCGTGTACAAGAGAAACTCTTTGAGGAAGAGAGCCAGAAGGAGCTCAGCAATATTGAATATATAAAGGAAATCACCCATAGAGAGATGGAAGAGATGAAATTAGAAAGAGTCAGTCTTGAGAAAGAAAAACAGGAAATTTCTGCTAACAAGGGGATTCTTGAAGTACAACAGTTGGAAATGAAAAAGG</gDNA_template>
            <first_frame> E  N  V  R  A  E  L  E  K  Q  Q  I  K  I  S  E  G  T  E  Q  L  K  I  T  E  D  E  R  M  E  H  S  R  L  Q  S  E  L  K  Q  E  I  V  K  C  R  L  L  R  E  D  L  L  K  E  A  E  D  L  K  Q  E  K  E  R  F  E  R  E  W  E  E  L  D  E  K  R  S  E  I  K  I  D  L  Q  E  L  N  E  R  R  E  N  L  E  K  L  K  R  S  E  E  E  R  I  S  K  E  K  L  E  T  D  N  Y  V  Q  M  E  L  E  A  L  R  V  A  R  E  T  F  E  A  T  M  D  H  E  K  S  I  L  A  E  E  T  R  S  E  K  S  Q  M  L  H  A  Y  E  Q  Q  K  R  E  L  E  S  D  M  Q  R  K  Q  E  E  M  E  S  A  L  R  V  Q  E  K  L  F  E  E  E  S  Q  K  E  L  S  N  I  E  Y  I  K  E  I  T  H  R  E  M  E  E  M  K  L  E  R  V  S  L  E  K  E  K  Q  E  I  S  A  N  K  G  I  L  E  V  Q  Q  L  E  M  K  K  </first_frame>
            <second_frame>  R  M  *  E  L  S  L  K  S  N  R  S  R  L  V  R  V  Q  N  N  L  K  *  L  K  M  R  E  W  N  I  L  A  Y  N  Q  N  *  S  R  R  *  L  S  V  D  S  S  E  K  I  Y  *  R  K  L  K  I  *  S  R  K  K  K  D  L  R  E  N  G  K  N  *  M  R  K  D  L  R  S  R  *  T  C  R  N  L  M  N  G  E  R  I  *  K  N  *  S  A  V  K  R  K  G  *  A  R  R  S  W  K  Q  T  I  M  S  R  W  S  W  K  P  L  E  W  Q  E  K  H  L  K  L  P  W  I  M  R  S  Q  Y  *  P  R  K  L  E  V  R  K  A  R  C  F  M  L  M  N  S  R  K  G  N  L  K  V  I  C  R  G  S  R  R  K  W  S  L  H  C  V  Y  K  R  N  S  L  R  K  R  A  R  R  S  S  A  I  L  N  I  *  R  K  S  P  I  E  R  W  K  R  *  N  *  K  E  S  V  L  R  K  K  N  R  K  F  L  L  T  R  G  F  L  K  Y  N  S  W  K  *  K  R </second_frame>
            <third_frame>   E  C  K  S  *  A  *  K  A  T  D  Q  D  *  *  G  Y  R  T  T  *  N  N  *  R  *  E  N  G  T  F  S  P  T  I  R  T  E  A  G  D  S  *  V  *  T  P  P  R  R  S  I  E  G  S  *  R  F  E  A  G  K  R  K  I  *  E  R  M  G  R  T  R  *  E  K  I  *  D  Q  D  R  L  A  G  T  *  *  T  E  R  E  F  R  K  T  E  A  Q  *  R  G  K  D  K  Q  G  E  A  G  N  R  Q  L  C  P  D  G  V  G  S  P  *  S  G  K  R  N  I  *  S  Y  H  G  S  *  E  V  N  I  S  R  G  N  S  K  *  E  K  P  D  A  S  C  L  *  T  A  E  K  G  T  *  K  *  Y  A  E  E  A  G  G  N  G  V  C  T  A  C  T  R  E  T  L  *  G  R  E  P  E  G  A  Q  Q  Y  *  I  Y  K  G  N  H  P  *  R  D  G  R  D  E  I  R  K  S  Q  S  *  E  R  K  T  G  N  F  C  *  Q  G  D  S  *  S  T  T  V  G  N  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52518" stop="53237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENVRAELEKQQIKISEGTEQLKITEDERMEHSRLQSELKQEIVKCRLLREDLLKEAEDLKQEKERFEREWEELDEKRSEIKIDLQELNERRENLEKLKRSEEERISKEKLETDNYVQMELEALRVARETFEATMDHEKSILAEETRSEKSQMLHAYEQQKRELESDMQRKQEEMESALRVQEKLFEEESQKELSNIEYIKEITHREMEEMKLERVSLEKEKQEISANKGILEVQQLEMKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52906" PGL_stop="52539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52906" e_stop="52539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="52906" e_stop="52539" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52906" stop="52539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTTTCTCTTGCCACTCTAAGGGCTTCCAACTCCATCTGGACATAATTGTCTGTTTCCAGCTTCTCCTTGCTTATCCTTTCCTCTTCACTGCGCTTCAGTTTTTCTAAATTCTCTCTCCGTTCATTAAGTTCCTGCAAGTCTATCTTGATCTCAGATCTTTTCTCATCTAGTTCTTCCCATTCTCTCTCAAATCTTTCTTTTTCCTGCTTCAAATCTTCAGCTTCCTTCAATAGATCTTCTCGGAGGAGTCTACACTTAACTATCTCCTGCTTCAGTTCTGATTGTAGGCGAGAATGTTCCATTCTCTCATCTTCAGTTATTTTAAGTTGTTCTGTACCCTCACTAATCTTGATCTGTTGCTTTTC</gDNA_template>
            <first_frame> N  V  S  L  A  T  L  R  A  S  N  S  I  W  T  *  L  S  V  S  S  F  S  L  L  I  L  S  S  S  L  R  F  S  F  S  K  F  S  L  R  S  L  S  S  C  K  S  I  L  I  S  D  L  F  S  S  S  S  S  H  S  L  S  N  L  S  F  S  C  F  K  S  S  A  S  F  N  R  S  S  R  R  S  L  H  L  T  I  S  C  F  S  S  D  C  R  R  E  C  S  I  L  S  S  S  V  I  L  S  C  S  V  P  S  L  I  L  I  C  C  F   </first_frame>
            <second_frame>  M  F  L  L  P  L  *  G  L  P  T  P  S  G  H  N  C  L  F  P  A  S  P  C  L  S  F  P  L  H  C  A  S  V  F  L  N  S  L  S  V  H  *  V  P  A  S  L  S  *  S  Q  I  F  S  H  L  V  L  P  I  L  S  Q  I  F  L  F  P  A  S  N  L  Q  L  P  S  I  D  L  L  G  G  V  Y  T  *  L  S  P  A  S  V  L  I  V  G  E  N  V  P  F  S  H  L  Q  L  F  *  V  V  L  Y  P  H  *  S  *  S  V  A  F  </second_frame>
            <third_frame>   C  F  S  C  H  S  K  G  F  Q  L  H  L  D  I  I  V  C  F  Q  L  L  L  A  Y  P  F  L  F  T  A  L  Q  F  F  *  I  L  S  P  F  I  K  F  L  Q  V  Y  L  D  L  R  S  F  L  I  *  F  F  P  F  S  L  K  S  F  F  F  L  L  Q  I  F  S  F  L  Q  *  I  F  S  E  E  S  T  L  N  Y  L  L  L  Q  F  *  L  *  A  R  M  F  H  S  L  I  F  S  Y  F  K  L  F  C  T  L  T  N  L  D  L  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52858" stop="52541"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSVSSFSLLILSSSLRFSFSKFSLRSLSSCKSILISDLFSSSSSHSLSNLSFSCFKSSASFNRSSRRSLHLTISCFSSDCRRECSILSSSVILSCSVPSLILICCF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53535" PGL_stop="55147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53535" e_stop="54184"/>
            <exon e_start="54457" e_stop="54604"/>
            <exon e_start="54964" e_stop="55147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53535" e_stop="54184" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="54185" i_stop="54456" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54457" e_stop="54604" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54605" i_stop="54963" i_length="359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54964" e_stop="55147" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53535" stop="54112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53625" stop="54115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54007" stop="54184"/>
              <exon start="54457" stop="54604"/>
              <exon start="54964" stop="55147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54007" stop="54184"/>
              <exon start="54457" stop="54604"/>
              <exon start="54964" stop="55126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGCTGGAACCATGTCCTGGTTTCGAAAGTGTACATCCAAGATTCTCAAATTCTCACCAAGCAAAAACATTGGAAATGTTGCTTCTGATTGTCTGGTTGATGAATCTTCTCTGTCACAGAAGTGTGCAGGCATATCACCAAATAAACAATCAAAGGAAGGAAATCCAATGGATCTGTCCATTTCCATGAATGTTCTTGATGATCAGAGGGTTCAACAGGATGATGGTGTTAGAGAGGTCAAAGTAGGCCAAGACAATGTAGAAGACTCTCATCATTCGGACATGAAAGCTGGACAGCGCAGAACTGTCAAGAAAGGGCGTGGTAGAACTAGTAAAACAGAAAAAGCTGCAAATATGACAGTTCTTGGGAAAATTTCTAAAGAGGGTGAGAATATCACCAATGGAAGTTTGGAGACTTCAGTTAATATGAACGAGGAGAGCCAGAGAGGATCTGGTCTTTTGGGTGGAGCACCGAGAAATTCCAGAAAGCGTAGTCATACATCACAGGGAACAGCTTGTGAGATTGATGGCAATAATAGTGAAGGACAGTCGGATAGTGTAGCCAGCATTCGTGGGAAAAGGAGGCAACAGGCTGCCCCTAGTGTGCAGGCTCATGCCGAAAGAAGATACAATCTGCGCCGACCTAGAAG : TGCTGCACCAGCGGCATCCTATGGATCTTTGCCAGAGCCAGTCGTAAAATCTCAGGAAGAGAATCAGAACTCTAAAGCTTCCCTGCAAACTCCTCAGGTGAACAACAGTGAAGACGTCATTGATCATCCCACGGTATCTGAGAGCCCT : TTCAATGATGCAGTGGACAATCTGGAAAGCAGTGCTAACAAGGTAAATGAGCTGTTGGATGATACAGGTTTGAGTGAAGAGGTGAATGTAACACCAAAACGACCTTCAGCATCCAGCGATGAGGAAGGGTCTGATGACAGTGATGATGAGGAGGAAGAAATTGAACATCCCGGTGAAGTGTCTG</gDNA_template>
            <first_frame> S  A  G  T  M  S  W  F  R  K  C  T  S  K  I  L  K  F  S  P  S  K  N  I  G  N  V  A  S  D  C  L  V  D  E  S  S  L  S  Q  K  C  A  G  I  S  P  N  K  Q  S  K  E  G  N  P  M  D  L  S  I  S  M  N  V  L  D  D  Q  R  V  Q  Q  D  D  G  V  R  E  V  K  V  G  Q  D  N  V  E  D  S  H  H  S  D  M  K  A  G  Q  R  R  T  V  K  K  G  R  G  R  T  S  K  T  E  K  A  A  N  M  T  V  L  G  K  I  S  K  E  G  E  N  I  T  N  G  S  L  E  T  S  V  N  M  N  E  E  S  Q  R  G  S  G  L  L  G  G  A  P  R  N  S  R  K  R  S  H  T  S  Q  G  T  A  C  E  I  D  G  N  N  S  E  G  Q  S  D  S  V  A  S  I  R  G  K  R  R  Q  Q  A  A  P  S  V  Q  A  H  A  E  R  R  Y  N  L  R  R  P  R  S :   A  A  P  A  A  S  Y  G  S  L  P  E  P  V  V  K  S  Q  E  E  N  Q  N  S  K  A  S  L  Q  T  P  Q  V  N  N  S  E  D  V  I  D  H  P  T  V  S  E  S  P  :  F  N  D  A  V  D  N  L  E  S  S  A  N  K  V  N  E  L  L  D  D  T  G  L  S  E  E  V  N  V  T  P  K  R  P  S  A  S  S  D  E  E  G  S  D  D  S  D  D  E  E  E  E  I  E  H  P  G  E  V  S  </first_frame>
            <second_frame>  L  L  E  P  C  P  G  F  E  S  V  H  P  R  F  S  N  S  H  Q  A  K  T  L  E  M  L  L  L  I  V  W  L  M  N  L  L  C  H  R  S  V  Q  A  Y  H  Q  I  N  N  Q  R  K  E  I  Q  W  I  C  P  F  P  *  M  F  L  M  I  R  G  F  N  R  M  M  V  L  E  R  S  K  *  A  K  T  M  *  K  T  L  I  I  R  T  *  K  L  D  S  A  E  L  S  R  K  G  V  V  E  L  V  K  Q  K  K  L  Q  I  *  Q  F  L  G  K  F  L  K  R  V  R  I  S  P  M  E  V  W  R  L  Q  L  I  *  T  R  R  A  R  E  D  L  V  F  W  V  E  H  R  E  I  P  E  S  V  V  I  H  H  R  E  Q  L  V  R  L  M  A  I  I  V  K  D  S  R  I  V  *  P  A  F  V  G  K  G  G  N  R  L  P  L  V  C  R  L  M  P  K  E  D  T  I  C  A  D  L  E   : V  L  H  Q  R  H  P  M  D  L  C  Q  S  Q  S  *  N  L  R  K  R  I  R  T  L  K  L  P  C  K  L  L  R  *  T  T  V  K  T  S  L  I  I  P  R  Y  L  R  A  L :   S  M  M  Q  W  T  I  W  K  A  V  L  T  R  *  M  S  C  W  M  I  Q  V  *  V  K  R  *  M  *  H  Q  N  D  L  Q  H  P  A  M  R  K  G  L  M  T  V  M  M  R  R  K  K  L  N  I  P  V  K  C  L </second_frame>
            <third_frame>   C  W  N  H  V  L  V  S  K  V  Y  I  Q  D  S  Q  I  L  T  K  Q  K  H  W  K  C  C  F  *  L  S  G  *  *  I  F  S  V  T  E  V  C  R  H  I  T  K  *  T  I  K  G  R  K  S  N  G  S  V  H  F  H  E  C  S  *  *  S  E  G  S  T  G  *  W  C  *  R  G  Q  S  R  P  R  Q  C  R  R  L  S  S  F  G  H  E  S  W  T  A  Q  N  C  Q  E  R  A  W  *  N  *  *  N  R  K  S  C  K  Y  D  S  S  W  E  N  F  *  R  G  *  E  Y  H  Q  W  K  F  G  D  F  S  *  Y  E  R  G  E  P  E  R  I  W  S  F  G  W  S  T  E  K  F  Q  K  A  *  S  Y  I  T  G  N  S  L  *  D  *  W  Q  *  *  *  R  T  V  G  *  C  S  Q  H  S  W  E  K  E  A  T  G  C  P  *  C  A  G  S  C  R  K  K  I  Q  S  A  P  T  *  K  :  C  C  T  S  G  I  L  W  I  F  A  R  A  S  R  K  I  S  G  R  E  S  E  L  *  S  F  P  A  N  S  S  G  E  Q  Q  *  R  R  H  *  S  S  H  G  I  *  E  P   : F  Q  *  C  S  G  Q  S  G  K  Q  C  *  Q  G  K  *  A  V  G  *  Y  R  F  E  *  R  G  E  C  N  T  K  T  T  F  S  I  Q  R  *  G  R  V  *  *  Q  *  *  *  G  G  R  N  *  T  S  R  *  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53535" stop="54184"/>
                    <exon start="54457" stop="54604"/>
                    <exon start="54964" stop="55146"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAGTMSWFRKCTSKILKFSPSKNIGNVASDCLVDESSLSQKCAGISPNKQSKEGNPMDLSISMNVLDDQRVQQDDGVREVKVGQDNVEDSHHSDMKAGQRRTVKKGRGRTSKTEKAANMTVLGKISKEGENITNGSLETSVNMNEESQRGSGLLGGAPRNSRKRSHTSQGTACEIDGNNSEGQSDSVASIRGKRRQQAAPSVQAHAERRYNLRRPRSAAPAASYGSLPEPVVKSQEENQNSKASLQTPQVNNSEDVIDHPTVSESPFNDAVDNLESSANKVNELLDDTGLSEEVNVTPKRPSASSDEEGSDDSDDEEEEIEHPGEVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55223" PGL_stop="55565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55223" e_stop="55565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="55223" e_stop="55565" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55223" stop="55565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216414" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAGCTCTAGGCATCTTGATTGGTATTTTGTTTCTTTTGCTACTTGTAGAGTAATTTGATGATTTTAGAGTAATGTGCAGTAGTGTGTATGCTTAAAGTTTAGTCAACAGAAATCAGTTTAGGGTCGGCAATTTGATTGTTCATATAATGTTGGTCCAACTCCGGGTGCACGCATATTGGTTTAACAATTTTTAGTATCCATATGCTTGCTGTCCCTAAGTTGACTATTGCAGCTGTAACACTAGAGTGTGCTTCTCTCCTGTATCTACACTATTGTAAGTTTAACCACTAAATAGGTGGATAATATTCTGCAATCCATTTGATTTTGATCTTTCCTAGTAG</gDNA_template>
            <first_frame> G  S  S  R  H  L  D  W  Y  F  V  S  F  A  T  C  R  V  I  *  *  F  *  S  N  V  Q  *  C  V  C  L  K  F  S  Q  Q  K  S  V  *  G  R  Q  F  D  C  S  Y  N  V  G  P  T  P  G  A  R  I  L  V  *  Q  F  L  V  S  I  C  L  L  S  L  S  *  L  L  Q  L  *  H  *  S  V  L  L  S  C  I  Y  T  I  V  S  L  T  T  K  *  V  D  N  I  L  Q  S  I  *  F  *  S  F  L  V  </first_frame>
            <second_frame>  V  A  L  G  I  L  I  G  I  L  F  L  L  L  L  V  E  *  F  D  D  F  R  V  M  C  S  S  V  Y  A  *  S  L  V  N  R  N  Q  F  R  V  G  N  L  I  V  H  I  M  L  V  Q  L  R  V  H  A  Y  W  F  N  N  F  *  Y  P  Y  A  C  C  P  *  V  D  Y  C  S  C  N  T  R  V  C  F  S  P  V  S  T  L  L  *  V  *  P  L  N  R  W  I  I  F  C  N  P  F  D  F  D  L  S  *  * </second_frame>
            <third_frame>   *  L  *  A  S  *  L  V  F  C  F  F  C  Y  L  *  S  N  L  M  I  L  E  *  C  A  V  V  C  M  L  K  V  *  S  T  E  I  S  L  G  S  A  I  *  L  F  I  *  C  W  S  N  S  G  C  T  H  I  G  L  T  I  F  S  I  H  M  L  A  V  P  K  L  T  I  A  A  V  T  L  E  C  A  S  L  L  Y  L  H  Y  C  K  F  N  H  *  I  G  G  *  Y  S  A  I  H  L  I  L  I  F  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0108N03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="69591" PGL_stop="70227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69591" e_stop="70227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="69591" e_stop="70227" e_length="637"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69591" stop="70227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCAACCCCCAAACCCATACACCAGTGGTTATCTTCTTCCCCCATCATTCTAATGATTTCAAAATTTTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCTCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAATTGTCGGGTTAAAGATGGAACTGTACAGGGAGGGGAGGGTAGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGAAGTTTAGGTTTTACTTTTTTTTTTTCATTTTTTTACTTTAAAATAATTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACGTCCTCTATTTTTTGTTTATTCTCGAAAAAACGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGTCCGCATATGACTTTG</gDNA_template>
            <first_frame> P  T  P  T  P  K  P  I  H  Q  W  L  S  S  S  P  I  I  L  M  I  S  K  F  L  V  S  V  V  I  F  F  P  H  H  S  N  G  F  K  I  L  S  I  L  F  H  L  *  I  F  R  R  D  S  F  L  H  L  S  L  P  K  K  R  D  E  V  K  S  Y  N  *  *  K  S  *  *  K  K  N  C  R  V  K  D  G  T  V  Q  G  G  E  G  S  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  E  V  *  V  L  L  F  F  F  H  F  F  T  L  K  *  F  Y  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  V  L  Y  F  L  F  I  L  E  K  T  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  S  A  Y  D  F  </first_frame>
            <second_frame>  P  P  Q  P  P  N  P  Y  T  S  G  Y  L  L  P  P  S  F  *  *  F  Q  N  F  *  Y  Q  W  L  S  S  S  P  T  I  L  M  V  S  K  F  L  A  F  C  F  I  Y  K  F  F  E  E  I  L  F  S  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  I  N  K  K  A  D  E  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  K  F  R  F  Y  F  F  F  F  I  F  L  L  *  N  N  F  I  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  S  S  I  F  C  L  F  S  K  K  R  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  C  P  H  M  T  L </second_frame>
            <third_frame>   H  P  N  P  Q  T  H  T  P  V  V  I  F  F  P  H  H  S  N  D  F  K  I  F  S  I  S  G  Y  L  L  P  P  P  F  *  W  F  Q  N  S  *  H  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  L  S  G  *  R  W  N  C  T  G  R  G  G  *  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  S  L  G  F  T  F  F  F  S  F  F  Y  F  K  I  I  L  F  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  R  P  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  Q  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  V  R  I  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0108N03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79860" PGL_stop="75340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79860" e_stop="79815"/>
            <exon e_start="79466" e_stop="79131"/>
            <exon e_start="78725" e_stop="78312"/>
            <exon e_start="78018" e_stop="77932"/>
            <exon e_start="77555" e_stop="77485"/>
            <exon e_start="77306" e_stop="77227"/>
            <exon e_start="76696" e_stop="76549"/>
            <exon e_start="76008" e_stop="75847"/>
            <exon e_start="75766" e_stop="75340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.456" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="0.966"/>
          <exon-intron don_prob="0.000" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79860" e_stop="79815" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79814" i_stop="79467" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79466" e_stop="79131" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.456">
            <gDNA_intron_boundary i_start="79130" i_stop="78726" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="78725" e_stop="78312" e_length="414"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78311" i_stop="78019" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78018" e_stop="77932" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="77931" i_stop="77556" i_length="376"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77555" e_stop="77485" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77484" i_stop="77307" i_length="178"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77306" e_stop="77227" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.802" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77226" i_stop="76697" i_length="530"/>
          </intron>
          <exon e_serial="7" e_score="0.966">
            <gDNA_exon_boundary e_start="76696" e_stop="76549" e_length="148"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="76548" i_stop="76009" i_length="540"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="76008" e_stop="75847" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="75846" i_stop="75767" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="75766" e_stop="75340" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79860" stop="79815"/>
              <exon start="79466" stop="79131"/>
              <exon start="78725" stop="78464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79860" stop="79815"/>
              <exon start="79466" stop="79131"/>
              <exon start="78725" stop="78662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78526" stop="78312"/>
              <exon start="78018" stop="77932"/>
              <exon start="77555" stop="77485"/>
              <exon start="77306" stop="77227"/>
              <exon start="76696" stop="76549"/>
              <exon start="76008" stop="75900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78521" stop="78312"/>
              <exon start="78018" stop="77932"/>
              <exon start="77555" stop="77485"/>
              <exon start="77306" stop="77227"/>
              <exon start="76696" stop="76549"/>
              <exon start="76008" stop="75975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78508" stop="78312"/>
              <exon start="78018" stop="77932"/>
              <exon start="77555" stop="77485"/>
              <exon start="77306" stop="77227"/>
              <exon start="76696" stop="76549"/>
              <exon start="76008" stop="75935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77545" stop="77485"/>
              <exon start="77306" stop="77227"/>
              <exon start="76696" stop="76549"/>
              <exon start="76008" stop="75877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76639" stop="76549"/>
              <exon start="76008" stop="75847"/>
              <exon start="75766" stop="75340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGCTCCAGATTCTCCTCCTCCATCAGAGTCAAAATCACCTCCAC : CTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAG : ATACATCATTCCTGAGATCAAGGTCTCAAAATTCCACTTATCTAGCTCCAGCTGGCTCGCAAAGCAATTTTATGTACTCTCCGGACCATGGGGGTATTGGAAATTCAAGATCATGGTTCACTTACGAAGAATTATCTGAGGCAACAAATGGTTTTTCTCCTGATAGTGTATTGGGTGAAGGTGGGTTTGGATGTGTCTACAAAGGTGTTCTTAATGACGGAAGAGAAGTCGCTGTCAAACAGCTGAAAAGTGGAAGTGGACAAGGGGAGCGTGAGTTCAGAGCAGAAGTTGAGATTATCAGCCGTGTGCACCATCGCCATTTGGTTTCACTTGTTGGTTACTGTATCTCAGAGCAGCAAAGGTTACTTGTCTACGACTATGTGCCAAATGACACGCTTGACTATCATCTTCATG : GTAAAGGCATGCCAACTATGGATTGGGCTACCCGAGTAAAAGTAGCTGCTGGTGCAGCACGTGGACTTGCTTATCTGCATGAAGACT : GTCATCCCCGCATTATCCATAGGGATATCAAAACATCAAACATTCTCTTGGATATCAATTTTGAGGCACAG : GTTGCTGATTTTGGCCTTGCAAGGTTAGCAGGTGATGCCAGTAGTACACACGTGACAACTCGTGTGATGGGAACCTTTGG : ATACTTGGCACCAGAGTATGCATCAAGTGGAAAATTAACAGAGAAATCTGATGTTTATTCATTTGGCGTTGTGCTTTTGGAGCTTATTACGGGGCGGAAACCTGTTGACCAGTCTCAGCCCTTAGGTGATGAAAGCCTGGTTGAATGG : GCTCGACCTTTGCTTGCTCAAGCACTTGAGACTGAAAATTTTGAAGACGTAGTAGATCCTAGGCTTGGAAACAACTTTGTTGCGGGTGAGATGTTCCGGATGATTGAAGCAGCTGCAGCTTGCGTGCGTCATTCAGGCTCTAAGAGGCCACGGATGAGTCAG : GTGGTTAGAGCTCTAGATTCCATGGATGAATTGTCAGATCTGTCCAATGGAGTGAAACCTGGACAAAGTGGAATTTTTGAGTCAAGGGAACAATCTGCACAGATAAGAATGTTTCAAAAGATGGCATTTGGAAGTCAAGAGTACAGTTCAGATTTCTTCAATTATTCCCAAGGCAGCTATAAGAGTTGAGTTCTCAATGGCTCATTACCAAAATAATTGCCCATGAAAAGCGTTTCTTCACAGAGAGATCTGACTTGTAATTAACATTGTAAATCACTGTGCTATTCTTTCTTTTTTTTTCGGCTAGTGTTGAAATATGCATTCTTTTTTACTCCTTTATGGTGTCTTCACACGACAAACAATTGGTTTTGTAGCATTCTGAAATCAACATTCTATTCATACAATGTAGATAAAATGTTAATCAAGG</gDNA_template>
            <first_frame> P  A  P  D  S  P  P  P  S  E  S  K  S  P  P   : P  N  P  L  T  S  P  P  P  S  I  S  P  P  A  P  P  N  N  T  S  P  A  G  A  P  P  P  L  P  V  T  R  L  P  T  E  K  P  T  A  I  P  K  P  A  I  T  A  D  S  S  A  R  N  G  G  G  N  K  A  G  S  V  V  A  I  G  V  V  A  G  F  L  A  L  S  L  V  I  V  A  V  W  F  T  R  R  R  K  K  R  E  S  A  F  N  L  N  Y  L  G  P  S  P  F  A  S  S  P  N  S   : D  T  S  F  L  R  S  R  S  Q  N  S  T  Y  L  A  P  A  G  S  Q  S  N  F  M  Y  S  P  D  H  G  G  I  G  N  S  R  S  W  F  T  Y  E  E  L  S  E  A  T  N  G  F  S  P  D  S  V  L  G  E  G  G  F  G  C  V  Y  K  G  V  L  N  D  G  R  E  V  A  V  K  Q  L  K  S  G  S  G  Q  G  E  R  E  F  R  A  E  V  E  I  I  S  R  V  H  H  R  H  L  V  S  L  V  G  Y  C  I  S  E  Q  Q  R  L  L  V  Y  D  Y  V  P  N  D  T  L  D  Y  H  L  H   : G  K  G  M  P  T  M  D  W  A  T  R  V  K  V  A  A  G  A  A  R  G  L  A  Y  L  H  E  D   : C  H  P  R  I  I  H  R  D  I  K  T  S  N  I  L  L  D  I  N  F  E  A  Q  :  V  A  D  F  G  L  A  R  L  A  G  D  A  S  S  T  H  V  T  T  R  V  M  G  T  F  G :   Y  L  A  P  E  Y  A  S  S  G  K  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  L  E  L  I  T  G  R  K  P  V  D  Q  S  Q  P  L  G  D  E  S  L  V  E  W  :  A  R  P  L  L  A  Q  A  L  E  T  E  N  F  E  D  V  V  D  P  R  L  G  N  N  F  V  A  G  E  M  F  R  M  I  E  A  A  A  A  C  V  R  H  S  G  S  K  R  P  R  M  S  Q  :  V  V  R  A  L  D  S  M  D  E  L  S  D  L  S  N  G  V  K  P  G  Q  S  G  I  F  E  S  R  E  Q  S  A  Q  I  R  M  F  Q  K  M  A  F  G  S  Q  E  Y  S  S  D  F  F  N  Y  S  Q  G  S  Y  K  S  *  V  L  N  G  S  L  P  K  *  L  P  M  K  S  V  S  S  Q  R  D  L  T  C  N  *  H  C  K  S  L  C  Y  S  F  F  F  F  R  L  V  L  K  Y  A  F  F  F  T  P  L  W  C  L  H  T  T  N  N  W  F  C  S  I  L  K  S  T  F  Y  S  Y  N  V  D  K  M  L  I  K  </first_frame>
            <second_frame>  Q  L  Q  I  L  L  L  H  Q  S  Q  N  H  L  H  :  L  T  P  *  H  L  H  P  L  L  S  H  L  L  L  P  Q  I  I  L  L  Q  L  E  L  P  L  H  C  L  *  L  A  F  L  Q  R  S  P  L  L  S  L  N  L  L  S  L  Q  I  Q  V  P  E  M  V  G  E  I  R  Q  E  V  W  W  Q  L  V  L  L  L  G  F  W  P  L  A  W  *  L  L  L  S  G  L  H  V  G  E  R  K  E  R  V  H  L  I  S  I  T  W  D  P  L  H  L  L  P  H  Q  I  Q  :  I  H  H  S  *  D  Q  G  L  K  I  P  L  I  *  L  Q  L  A  R  K  A  I  L  C  T  L  R  T  M  G  V  L  E  I  Q  D  H  G  S  L  T  K  N  Y  L  R  Q  Q  M  V  F  L  L  I  V  Y  W  V  K  V  G  L  D  V  S  T  K  V  F  L  M  T  E  E  K  S  L  S  N  S  *  K  V  E  V  D  K  G  S  V  S  S  E  Q  K  L  R  L  S  A  V  C  T  I  A  I  W  F  H  L  L  V  T  V  S  Q  S  S  K  G  Y  L  S  T  T  M  C  Q  M  T  R  L  T  I  I  F  M  :  V  K  A  C  Q  L  W  I  G  L  P  E  *  K  *  L  L  V  Q  H  V  D  L  L  I  C  M  K  T  :  V  I  P  A  L  S  I  G  I  S  K  H  Q  T  F  S  W  I  S  I  L  R  H  R :   L  L  I  L  A  L  Q  G  *  Q  V  M  P  V  V  H  T  *  Q  L  V  *  W  E  P  L   : D  T  W  H  Q  S  M  H  Q  V  E  N  *  Q  R  N  L  M  F  I  H  L  A  L  C  F  W  S  L  L  R  G  G  N  L  L  T  S  L  S  P  *  V  M  K  A  W  L  N  G :   L  D  L  C  L  L  K  H  L  R  L  K  I  L  K  T  *  *  I  L  G  L  E  T  T  L  L  R  V  R  C  S  G  *  L  K  Q  L  Q  L  A  C  V  I  Q  A  L  R  G  H  G  *  V  R :   W  L  E  L  *  I  P  W  M  N  C  Q  I  C  P  M  E  *  N  L  D  K  V  E  F  L  S  Q  G  N  N  L  H  R  *  E  C  F  K  R  W  H  L  E  V  K  S  T  V  Q  I  S  S  I  I  P  K  A  A  I  R  V  E  F  S  M  A  H  Y  Q  N  N  C  P  *  K  A  F  L  H  R  E  I  *  L  V  I  N  I  V  N  H  C  A  I  L  S  F  F  F  G  *  C  *  N  M  H  S  F  L  L  L  Y  G  V  F  T  R  Q  T  I  G  F  V  A  F  *  N  Q  H  S  I  H  T  M  *  I  K  C  *  S  R </second_frame>
            <third_frame>   S  S  R  F  S  S  S  I  R  V  K  I  T  S  T :   *  P  L  N  I  S  T  P  F  Y  L  T  S  C  S  P  K  *  Y  F  S  S  W  S  S  P  S  I  A  C  D  S  P  S  Y  R  E  A  H  C  Y  P  *  T  C  Y  H  C  R  F  K  C  Q  K  W  W  G  K  *  G  R  K  C  G  G  N  W  C  C  C  W  V  F  G  P  *  L  G  D  C  C  C  L  V  Y  T  *  A  K  E  K  R  E  C  I  *  S  Q  L  P  G  T  L  S  I  C  F  L  T  K  F  R :   Y  I  I  P  E  I  K  V  S  K  F  H  L  S  S  S  S  W  L  A  K  Q  F  Y  V  L  S  G  P  W  G  Y  W  K  F  K  I  M  V  H  L  R  R  I  I  *  G  N  K  W  F  F  S  *  *  C  I  G  *  R  W  V  W  M  C  L  Q  R  C  S  *  *  R  K  R  S  R  C  Q  T  A  E  K  W  K  W  T  R  G  A  *  V  Q  S  R  S  *  D  Y  Q  P  C  A  P  S  P  F  G  F  T  C  W  L  L  Y  L  R  A  A  K  V  T  C  L  R  L  C  A  K  *  H  A  *  L  S  S  S  W :   *  R  H  A  N  Y  G  L  G  Y  P  S  K  S  S  C  W  C  S  T  W  T  C  L  S  A  *  R  L :   S  S  P  H  Y  P  *  G  Y  Q  N  I  K  H  S  L  G  Y  Q  F  *  G  T   : G  C  *  F  W  P  C  K  V  S  R  *  C  Q  *  Y  T  R  D  N  S  C  D  G  N  L  W  :  I  L  G  T  R  V  C  I  K  W  K  I  N  R  E  I  *  C  L  F  I  W  R  C  A  F  G  A  Y  Y  G  A  E  T  C  *  P  V  S  A  L  R  *  *  K  P  G  *  M   : G  S  T  F  A  C  S  S  T  *  D  *  K  F  *  R  R  S  R  S  *  A  W  K  Q  L  C  C  G  *  D  V  P  D  D  *  S  S  C  S  L  R  A  S  F  R  L  *  E  A  T  D  E  S   : G  G  *  S  S  R  F  H  G  *  I  V  R  S  V  Q  W  S  E  T  W  T  K  W  N  F  *  V  K  G  T  I  C  T  D  K  N  V  S  K  D  G  I  W  K  S  R  V  Q  F  R  F  L  Q  L  F  P  R  Q  L  *  E  L  S  S  Q  W  L  I  T  K  I  I  A  H  E  K  R  F  F  T  E  R  S  D  L  *  L  T  L  *  I  T  V  L  F  F  L  F  F  S  A  S  V  E  I  C  I  L  F  Y  S  F  M  V  S  S  H  D  K  Q  L  V  L  *  H  S  E  I  N  I  L  F  I  Q  C  R  *  N  V  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79860" stop="79815"/>
                    <exon start="79466" stop="79131"/>
                    <exon start="78725" stop="78312"/>
                    <exon start="78018" stop="77932"/>
                    <exon start="77555" stop="77485"/>
                    <exon start="77306" stop="77227"/>
                    <exon start="76696" stop="76549"/>
                    <exon start="76008" stop="75847"/>
                    <exon start="75766" stop="75578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPDSPPPSESKSPPPNPLTSPPPSISPPAPPNNTSPAGAPPPLPVTRLPTEKPTAIPKPAITADSSARNGGGNKAGSVVAIGVVAGFLALSLVIVAVWFTRRRKKRESAFNLNYLGPSPFASSPNSDTSFLRSRSQNSTYLAPAGSQSNFMYSPDHGGIGNSRSWFTYEELSEATNGFSPDSVLGEGGFGCVYKGVLNDGREVAVKQLKSGSGQGEREFRAEVEIISRVHHRHLVSLVGYCISEQQRLLVYDYVPNDTLDYHLHGKGMPTMDWATRVKVAAGAARGLAYLHEDCHPRIIHRDIKTSNILLDINFEAQVADFGLARLAGDASSTHVTTRVMGTFGYLAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDQSQPLGDESLVEWARPLLAQALETENFEDVVDPRLGNNFVAGEMFRMIEAAAACVRHSGSKRPRMSQVVRALDSMDELSDLSNGVKPGQSGIFESREQSAQIRMFQKMAFGSQEYSSDFFNYSQGSYKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79637" e_stop="79131"/>
            <exon e_start="78725" e_stop="78708"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.456" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79637" e_stop="79131" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.456">
            <gDNA_intron_boundary i_start="79130" i_stop="78726" i_length="405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78725" e_stop="78708" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79637" stop="79131"/>
              <exon start="78725" stop="78708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCACCTCCTCCCCCTCCAGCAGTTTCACCTTCTCCTCCACCTCCAGTGAAAAATCAATCACCACCCCCTGATTCTCCACCTCCTGCACCTGTTGCAAATCCGCCACAAAACTCCCCTCCACCTCCTGCATTGGCGCCTCCTCCAGCCTCACTGCCATCCGCCCCTCCACCTAACCCCTTAACATCTCCACCCCCTTCTATCTCACCTCCTGCTCCCCCAAATAATACTTCTCCAGCTGGAGCTCCCCCTCCATTGCCTGTGACTCGCCTTCCTACAGAGAAGCCCACTGCTATCCCTAAACCTGCTATCACTGCAGATTCAAGTGCCAGAAATGGTGGGGGAAATAAGGCAGGAAGTGTGGTGGCAATTGGTGTTGTTGCTGGGTTTTTGGCCCTTAGCTTGGTGATTGTTGCTGTCTGGTTTACACGTAGGCGAAAGAAAAGAGAGAGTGCATTTAATCTCAATTACCTGGGACCCTCTCCATTTGCTTCCTCACCAAATTCAG : ATACATCATTCCTGAGAT</gDNA_template>
            <first_frame> P  H  L  L  P  L  Q  Q  F  H  L  L  L  H  L  Q  *  K  I  N  H  H  P  L  I  L  H  L  L  H  L  L  Q  I  R  H  K  T  P  L  H  L  L  H  W  R  L  L  Q  P  H  C  H  P  P  L  H  L  T  P  *  H  L  H  P  L  L  S  H  L  L  L  P  Q  I  I  L  L  Q  L  E  L  P  L  H  C  L  *  L  A  F  L  Q  R  S  P  L  L  S  L  N  L  L  S  L  Q  I  Q  V  P  E  M  V  G  E  I  R  Q  E  V  W  W  Q  L  V  L  L  L  G  F  W  P  L  A  W  *  L  L  L  S  G  L  H  V  G  E  R  K  E  R  V  H  L  I  S  I  T  W  D  P  L  H  L  L  P  H  Q  I  Q  :  I  H  H  S  *  D </first_frame>
            <second_frame>  P  T  S  S  P  S  S  S  F  T  F  S  S  T  S  S  E  K  S  I  T  T  P  *  F  S  T  S  C  T  C  C  K  S  A  T  K  L  P  S  T  S  C  I  G  A  S  S  S  L  T  A  I  R  P  S  T  *  P  L  N  I  S  T  P  F  Y  L  T  S  C  S  P  K  *  Y  F  S  S  W  S  S  P  S  I  A  C  D  S  P  S  Y  R  E  A  H  C  Y  P  *  T  C  Y  H  C  R  F  K  C  Q  K  W  W  G  K  *  G  R  K  C  G  G  N  W  C  C  C  W  V  F  G  P  *  L  G  D  C  C  C  L  V  Y  T  *  A  K  E  K  R  E  C  I  *  S  Q  L  P  G  T  L  S  I  C  F  L  T  K  F  R :   Y  I  I  P  E   </second_frame>
            <third_frame>   P  P  P  P  P  P  A  V  S  P  S  P  P  P  P  V  K  N  Q  S  P  P  P  D  S  P  P  P  A  P  V  A  N  P  P  Q  N  S  P  P  P  P  A  L  A  P  P  P  A  S  L  P  S  A  P  P  P  N  P  L  T  S  P  P  P  S  I  S  P  P  A  P  P  N  N  T  S  P  A  G  A  P  P  P  L  P  V  T  R  L  P  T  E  K  P  T  A  I  P  K  P  A  I  T  A  D  S  S  A  R  N  G  G  G  N  K  A  G  S  V  V  A  I  G  V  V  A  G  F  L  A  L  S  L  V  I  V  A  V  W  F  T  R  R  R  K  K  R  E  S  A  F  N  L  N  Y  L  G  P  S  P  F  A  S  S  P  N  S   : D  T  S  F  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79635" stop="79131"/>
                    <exon start="78725" stop="78709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPPPPPAVSPSPPPPVKNQSPPPDSPPPAPVANPPQNSPPPPALAPPPASLPSAPPPNPLTSPPPSISPPAPPNNTSPAGAPPPLPVTRLPTEKPTAIPKPAITADSSARNGGGNKAGSVVAIGVVAGFLALSLVIVAVWFTRRRKKRESAFNLNYLGPSPFASSPNSDTSFLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="84094" PGL_stop="83377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84094" e_stop="83377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84094" e_stop="83377" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84094" stop="83377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84094" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGAGAATTCACTAATTATGCTTGTTACATTGTTTATTCTTGATGGATTGA</gDNA_template>
            <first_frame> V  F  F  S  G  R  L  H  E  L  G  T  E  E  E  P  A  L  H  A  S  *  V  F  *  L  M  E  T  T  F  L  G  C  R  A  D  *  V  S  I  W  K  K  S  R  E  H  K  *  S  N  *  C  I  L  F  S  S  I  D  G  I  R  I  W  R  C  R  S  C  F  A  W  L  H  S  N  S  L  *  N  P  V  S  T  D  L  V  A  C  K  K  R  *  Q  N  I  C  T  K  I  C  E  E  E  *  G  C  W  Y  I  M  V  *  K  K  R  Q  H  S  L  V  C  S  S  *  E  E  R  H  *  A  W  N  S  S  S  T  N  I  A  N  H  *  G  C  V  F  *  C  *  L  C  E  G  A  R  K  M  G  I  H  *  R  T  Q  K  Q  N  *  G  R  M  E  R  I  C  L  C  L  G  S  N  L  *  A  E  A  S  S  K  R  S  E  G  P  *  Q  S  *  *  W  K  F  T  L  K  S  F  V  V  D  S  *  Q  K  M  I  S  F  K  L  E  N  S  L  I  M  L  V  T  L  F  I  L  D  G  L  </first_frame>
            <second_frame>  Y  S  L  V  E  D  Y  T  N  L  G  P  K  K  N  Q  H  Y  T  R  L  R  C  F  D  L  W  K  L  H  S  W  A  A  G  L  T  E  F  P  F  G  R  N  Q  E  S  T  S  E  A  I  N  A  Y  Y  S  A  A  L  M  G  S  A  Y  G  D  A  D  L  V  S  L  G  S  T  L  T  A  F  E  I  Q  S  A  Q  T  W  W  H  V  K  R  D  N  K  I  Y  A  P  R  F  V  K  K  N  K  V  V  G  I  L  W  S  R  K  R  D  S  I  L  W  F  A  P  A  E  R  K  D  I  R  L  G  I  Q  V  L  P  I  L  P  I  T  E  V  V  F  S  D  V  D  Y  V  K  E  L  V  K  W  A  F  T  S  V  P  K  N  R  T  E  E  G  W  K  G  F  V  Y  A  L  E  A  I  Y  K  Q  K  Q  A  L  K  E  V  R  D  L  S  S  H  D  D  G  N  S  L  S  N  L  L  W  W  I  H  S  R  K  *  S  A  L  N  L  R  I  H  *  L  C  L  L  H  C  L  F  L  M  D  * </second_frame>
            <third_frame>   I  L  *  W  K  I  T  R  T  W  D  R  R  R  T  S  I  T  R  V  L  G  V  L  T  Y  G  N  Y  I  L  G  L  Q  G  *  L  S  F  H  L  E  E  I  K  R  A  Q  V  K  Q  L  M  H  I  I  Q  Q  H  *  W  D  P  H  M  E  M  Q  I  L  F  R  L  A  P  L  *  Q  P  L  K  S  S  Q  H  R  L  G  G  M  *  K  E  I  T  K  Y  M  H  Q  D  L  *  R  R  I  R  L  L  V  Y  Y  G  L  E  K  E  T  A  F  S  G  L  L  Q  L  R  G  K  T  L  G  L  E  F  K  F  Y  Q  Y  C  Q  S  L  R  L  C  F  L  M  L  I  M  *  R  S  S  *  N  G  H  S  L  A  Y  P  K  T  E  L  R  K  D  G  K  D  L  F  M  P  W  K  Q  F  I  S  R  S  K  L  *  K  K  *  G  T  L  A  V  M  M  M  E  I  H  S  Q  I  F  C  G  G  F  I  A  E  N  D  Q  L  *  T  *  E  F  T  N  Y  A  C  Y  I  V  Y  S  *  W  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84093" stop="83440"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSLVEDYTNLGPKKNQHYTRLRCFDLWKLHSWAAGLTEFPFGRNQESTSEAINAYYSAALMGSAYGDADLVSLGSTLTAFEIQSAQTWWHVKRDNKIYAPRFVKKNKVVGILWSRKRDSILWFAPAERKDIRLGIQVLPILPITEVVFSDVDYVKELVKWAFTSVPKNRTEEGWKGFVYALEAIYKQKQALKEVRDLSSHDDGNSLSNLLWWIHSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="84970" PGL_stop="84553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84970" e_stop="84553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="84970" e_stop="84553" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84970" stop="84553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACACTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTTCTCAGGTGTTATTCGTATTGCTCTACTGGCTGATTCTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGTATAAGTGGGATGTGAAGGGTGCGGGGAAGTTGCTAATGCTTGCTCACCCCCTCCATTGTCGACTTCTTTCAAAAGCAGATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGTTGGTGTAATTGGAGATACATGGGATCTT</gDNA_template>
            <first_frame> Q  A  L  L  *  *  F  F  Y  *  V  H  Y  Q  T  P  E  S  S  I  V  D  P  I  C  V  C  T  D  S  F  D  *  *  C  I  H  H  *  V  W  W  V  L  R  C  Y  S  Y  C  S  T  G  *  F  *  F  P  I  *  E  N  T  *  Y  V  *  L  G  L  S  R  V  W  K  C  H  F  G  V  F  C  S  Q  V  *  V  G  C  E  G  C  G  E  V  A  N  A  C  S  P  P  P  L  S  T  S  F  K  S  R  C  F  S  N  C  A  G  G  C  Q  V  *  *  H  G  W  *  A  C  W  C  N  W  R  Y  M  G  S  </first_frame>
            <second_frame>  K  L  S  C  D  S  S  F  T  K  Y  T  I  R  L  R  N  R  Q  S  W  I  L  Y  A  S  A  P  I  H  L  T  N  N  V  S  T  I  K  S  G  G  F  S  G  V  I  R  I  A  L  L  A  D  S  D  S  Q  F  E  K  I  L  D  T  Y  S  S  A  Y  P  V  S  G  S  A  I  L  G  S  F  A  L  K  Y  K  W  D  V  K  G  A  G  K  L  L  M  L  A  H  P  L  H  C  R  L  L  S  K  A  D  A  S  V  T  V  L  E  D  V  K  Y  S  S  M  D  G  E  L  V  G  V  I  G  D  T  W  D  L </second_frame>
            <third_frame>   S  S  P  V  I  V  L  L  L  S  T  L  S  D  S  G  I  V  N  R  G  S  Y  M  R  L  H  R  F  I  *  L  I  M  Y  P  P  L  S  L  V  G  S  Q  V  L  F  V  L  L  Y  W  L  I  L  I  P  N  L  R  K  Y  L  I  R  I  A  R  L  I  P  C  L  E  V  P  F  W  G  L  L  L  S  S  I  S  G  M  *  R  V  R  G  S  C  *  C  L  L  T  P  S  I  V  D  F  F  Q  K  Q  M  L  Q  *  L  C  W  R  M  S  S  I  V  A  W  M  V  S  L  L  V  *  L  E  I  H  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84969" stop="84553"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSCDSSFTKYTIRLRNRQSWILYASAPIHLTNNVSTIKSGGFSGVIRIALLADSDSQFEKILDTYSSAYPVSGSAILGSFALKYKWDVKGAGKLLMLAHPLHCRLLSKADASVTVLEDVKYSSMDGELVGVIGDTWDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="85770" PGL_stop="85142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85770" e_stop="85142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="85770" e_stop="85142" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85770" stop="85142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85770" stop="85148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTCCAACAA</gDNA_template>
            <first_frame> I  C  R  N  L  G  L  F  S  N  Y  S  *  R  L  H  *  H  E  D  V  T  F  *  I  S  H  L  F  K  V  N  *  T  I  E  N  L  Q  I  Q  I  F  Y  L  F  L  I  H  L  L  F  K  L  N  Q  V  A  N  I  L  K  R  V  F  *  K  S  L  L  *  S  S  *  M  G  A  G  P  P  K  P  L  Y  S  E  Y  S  I  L  N  S  M  K  M  V  P  L  L  L  F  Y  A  F  S  V  F  V  Q  G  Y  N  A  E  L  T  L  H  Q  S  T  Q  F  L  F  P  Q  G  K  S  L  V  L  P  E  P  S  D  Y  F  S  S  H  L  V  S  T  P  L  P  T  N  S  F  F  Q  N  F  V  L  K  N  G  D  Q  P  E  Y  I  Q  P  Y  L  I  R  S  A  N  S  S  I  S  I  S  Y  P  S  Q  N  I  T  S  D  F  I  E  Q  I  F  R  P  D  L  T  I  S  A  S  N   </first_frame>
            <second_frame>  F  A  E  I  L  D  F  S  A  T  I  L  D  D  F  I  D  T  K  M  S  R  S  E  F  L  T  Y  S  K  S  T  R  Q  *  R  I  S  R  F  R  F  S  I  Y  S  *  S  T  F  S  L  N  *  T  K  *  P  I  Y  *  K  G  S  S  K  N  L  F  F  N  H  L  E  W  E  L  V  L  Q  N  L  C  T  V  S  I  Q  S  S  T  A  *  K  W  C  H  F  Y  C  F  M  H  F  L  F  L  Y  R  V  I  M  L  N  *  P  C  T  K  A  L  S  F  S  S  L  K  E  N  L  *  S  C  L  N  H  Q  I  T  F  L  V  I  L  Y  L  P  L  C  P  L  I  H  F  F  K  I  L  Y  S  R  M  V  I  S  L  S  I  S  N  L  I  L  F  A  L  L  T  H  P  F  L  F  L  I  H  L  R  T  L  P  L  I  S  L  N  R  F  F  D  P  I  *  L  Y  L  L  P  T  </second_frame>
            <third_frame>   L  Q  K  S  W  T  F  Q  Q  L  F  L  T  T  S  L  T  R  R  C  H  V  L  N  F  S  L  I  Q  S  Q  L  D  N  R  E  S  P  D  S  D  F  L  S  I  P  N  P  P  S  L  *  I  K  P  S  S  Q  Y  I  K  K  G  L  L  K  I  S  S  L  I  I  L  N  G  S  W  S  S  K  T  S  V  Q  *  V  F  N  P  Q  Q  H  E  N  G  A  T  F  T  V  L  C  I  F  C  F  C  T  G  L  *  C  *  I  N  L  A  P  K  H  S  V  S  L  P  S  R  K  I  F  S  L  A  *  T  I  R  L  L  F  *  S  S  C  I  Y  P  F  A  H  *  F  I  F  S  K  F  C  T  Q  E  W  *  S  A  *  V  Y  P  T  L  S  Y  S  L  C  *  L  I  H  F  Y  F  L  S  I  S  E  H  Y  L  *  F  H  *  T  D  F  S  T  R  F  N  Y  I  C  F  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85548" stop="85144"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGAGPPKPLYSEYSILNSMKMVPLLLFYAFSVFVQGYNAELTLHQSTQFLFPQGKSLVLPEPSDYFSSHLVSTPLPTNSFFQNFVLKNGDQPEYIQPYLIRSANSSISISYPSQNITSDFIEQIFRPDLTISASN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="90452" PGL_stop="89720"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90452" e_stop="89720"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="90452" e_stop="89720" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90452" stop="89720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCAAAGTATGCCCGCCTGAGGTGTTTTGACTTGTGGAAGTTGCATTCTTGGGCTGGGGGATTGACAGAGTTTGCAGATGGACGAAACCAAGAGAGCACAAGTGAAGCAGTTAATGCATACTATTCAGCAGCTTTGATGGGTTTGGCCTATGGGGATACCCATCTTGTTGCCATTGGATCGACCCTTTCAGCTTTAGAGATTCATTCTGCACAGACTTGGTGGCATGTGAAAGAGGGAAGCACTTTATATGGGGAAGAATTCACAAAAAACAACAGGGTGGTGGGTGTTTTATGGTCTAACAAAAGGGATAGCGGCCTTTGGTTTGCTCCACCTGAATGGAAAGAGTGTAGACTTGGAATTCAGGTCTTACCAATATTGCCCATTACTGAACTTCTGTTTTCAGACGTGCAGTTTGTGAAGCAGTTGGTCGAATGGACACTGCCAGCTCTGGCAAGGGAAGGGGTTGGAGAAGGATGGAAAGGGTTTGTGTATACTTTGGAAGCAATATATGATAAAGTGGGTGCTTTGAACAAAACTAGGAGCTTAACTGGGTTTGATGATGGAAATTCTCTTTCAAATCTTCTATGGTGGATTCATTCTAGAGATAATGAAGTGGCAGAAGGTGATAGAGGAAGCAAGTTCTGCTGGTTCCGACACTACTCTCATTGATTCTTTTACGGTGTCTTACATTTTGAGTATTCTCAATATGATCTGATGGGAACCATTAAA</gDNA_template>
            <first_frame> K  F  K  V  C  P  P  E  V  F  *  L  V  E  V  A  F  L  G  W  G  I  D  R  V  C  R  W  T  K  P  R  E  H  K  *  S  S  *  C  I  L  F  S  S  F  D  G  F  G  L  W  G  Y  P  S  C  C  H  W  I  D  P  F  S  F  R  D  S  F  C  T  D  L  V  A  C  E  R  G  K  H  F  I  W  G  R  I  H  K  K  Q  Q  G  G  G  C  F  M  V  *  Q  K  G  *  R  P  L  V  C  S  T  *  M  E  R  V  *  T  W  N  S  G  L  T  N  I  A  H  Y  *  T  S  V  F  R  R  A  V  C  E  A  V  G  R  M  D  T  A  S  S  G  K  G  R  G  W  R  R  M  E  R  V  C  V  Y  F  G  S  N  I  *  *  S  G  C  F  E  Q  N  *  E  L  N  W  V  *  *  W  K  F  S  F  K  S  S  M  V  D  S  F  *  R  *  *  S  G  R  R  *  *  R  K  Q  V  L  L  V  P  T  L  L  S  L  I  L  L  R  C  L  T  F  *  V  F  S  I  *  S  D  G  N  H  *  </first_frame>
            <second_frame>  N  S  K  Y  A  R  L  R  C  F  D  L  W  K  L  H  S  W  A  G  G  L  T  E  F  A  D  G  R  N  Q  E  S  T  S  E  A  V  N  A  Y  Y  S  A  A  L  M  G  L  A  Y  G  D  T  H  L  V  A  I  G  S  T  L  S  A  L  E  I  H  S  A  Q  T  W  W  H  V  K  E  G  S  T  L  Y  G  E  E  F  T  K  N  N  R  V  V  G  V  L  W  S  N  K  R  D  S  G  L  W  F  A  P  P  E  W  K  E  C  R  L  G  I  Q  V  L  P  I  L  P  I  T  E  L  L  F  S  D  V  Q  F  V  K  Q  L  V  E  W  T  L  P  A  L  A  R  E  G  V  G  E  G  W  K  G  F  V  Y  T  L  E  A  I  Y  D  K  V  G  A  L  N  K  T  R  S  L  T  G  F  D  D  G  N  S  L  S  N  L  L  W  W  I  H  S  R  D  N  E  V  A  E  G  D  R  G  S  K  F  C  W  F  R  H  Y  S  H  *  F  F  Y  G  V  L  H  F  E  Y  S  Q  Y  D  L  M  G  T  I  K </second_frame>
            <third_frame>   I  Q  S  M  P  A  *  G  V  L  T  C  G  S  C  I  L  G  L  G  D  *  Q  S  L  Q  M  D  E  T  K  R  A  Q  V  K  Q  L  M  H  T  I  Q  Q  L  *  W  V  W  P  M  G  I  P  I  L  L  P  L  D  R  P  F  Q  L  *  R  F  I  L  H  R  L  G  G  M  *  K  R  E  A  L  Y  M  G  K  N  S  Q  K  T  T  G  W  W  V  F  Y  G  L  T  K  G  I  A  A  F  G  L  L  H  L  N  G  K  S  V  D  L  E  F  R  S  Y  Q  Y  C  P  L  L  N  F  C  F  Q  T  C  S  L  *  S  S  W  S  N  G  H  C  Q  L  W  Q  G  K  G  L  E  K  D  G  K  G  L  C  I  L  W  K  Q  Y  M  I  K  W  V  L  *  T  K  L  G  A  *  L  G  L  M  M  E  I  L  F  Q  I  F  Y  G  G  F  I  L  E  I  M  K  W  Q  K  V  I  E  E  A  S  S  A  G  S  D  T  T  L  I  D  S  F  T  V  S  Y  I  L  S  I  L  N  M  I  *  W  E  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90451" stop="89780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSKYARLRCFDLWKLHSWAGGLTEFADGRNQESTSEAVNAYYSAALMGLAYGDTHLVAIGSTLSALEIHSAQTWWHVKEGSTLYGEEFTKNNRVVGVLWSNKRDSGLWFAPPEWKECRLGIQVLPILPITELLFSDVQFVKQLVEWTLPALAREGVGEGWKGFVYTLEAIYDKVGALNKTRSLTGFDDGNSLSNLLWWIHSRDNEVAEGDRGSKFCWFRHYSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="106232" PGL_stop="104650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106232" e_stop="105717"/>
            <exon e_start="105556" e_stop="104650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106232" e_stop="105717" e_length="516"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.798">
            <gDNA_intron_boundary i_start="105716" i_stop="105557" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105556" e_stop="104650" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106232" stop="105717"/>
              <exon start="105556" stop="105267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106228" stop="105717"/>
              <exon start="105556" stop="105333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106221" stop="105717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106183" stop="105854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105994" stop="105717"/>
              <exon start="105556" stop="105224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105381" stop="104650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT : GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</gDNA_template>
            <first_frame> G  G  V  A  E  L  F  D  S  F  R  K  V  I  L  P  I  A  T  L  L  L  L  L  K  I  S  Y  S  S  F  D  S  T  T  D  S  L  L  Q  N  L  E  S  S  Q  N  G  S  L  P  L  D  Q  P  E  Q  V  S  P  G  I  T  S  A  S  P  S  T  N  Y  S  A  K  T  G  I  R  Q  Q  T  C  N  I  F  V  G  K  W  I  P  Y  P  K  G  P  Y  Y  T  N  E  S  N  C  V  I  D  D  R  Q  N  C  M  K  Y  G  R  P  D  S  D  F  I  H  W  R  W  K  P  N  D  C  E  L  P  L  F  D  A  T  Q  F  L  Q  I  V  R  G  K  T  L  A  F  V  G  D  S  L  A  R  N  Q  M  Q  S  L  V  C  I  L  S  N  :  A  S  I  P  V  D  V  S  E  T  T  D  T  K  F  R  R  W  L  Y  K  D  Y  N  F  T  I  M  A  L  W  S  P  Q  L  I  K  S  Y  D  S  D  P  T  G  D  P  Y  Y  S  L  M  N  L  Y  L  D  K  A  D  D  V  W  A  S  Q  V  E  K  A  D  I  I  I  I  S  G  G  Q  W  F  F  R  P  F  L  Y  Y  E  N  D  Q  L  I  G  C  H  K  C  N  Q  K  N  V  T  E  H  T  H  Y  Y  G  Y  R  M  A  F  R  T  A  F  K  T  L  L  N  L  Q  K  L  K  G  R  L  V  M  L  R  P  F  S  P  A  H  F  E  N  G  D  W  N  N  G  G  N  C  N  R  T  R  P  F  K  N  E  E  M  K  L  D  G  Y  E  L  K  M  Y  M  T  Q  L  E  E  F  K  A  A  E  K  E  G  R  K  R  G  S  V  K  F  K  L  L  D  T  T  E  A  M  V  M  R  P  D  G  H  P  N  H  Y  G  H  W  P  N  E  K  K  L  P  D  C  V  H  W  C  M  P  G  P  V  D  T  W  N  E  L  L  L  A  T  L  K  M  E  G  D  E  L  *  K  Q  N  Y  V  *  N  L  V  T  N  I  *  *  L  F  Q  M  F  V  *  F  V  L  G  K  R  V  *  V  F  C  K  E  V  L  Y  Q  Y  I  F  L  S  </first_frame>
            <second_frame>  V  V  *  Q  S  C  L  I  A  L  E  K  L  F  Y  Q  S  R  R  Y  C  F  Y  S  K  L  A  T  L  H  L  I  L  P  L  I  L  C  C  K  I  L  N  Q  V  K  M  D  H  S  L  L  I  S  Q  S  K  F  L  Q  E  L  L  A  L  V  L  A  L  T  I  R  R  K  Q  G  *  G  S  K  H  V  I  S  L  W  E  N  G  Y  H  I  Q  R  D  H  T  I  Q  M  K  V  T  V  *  *  M  I  D  R  I  V  *  N  M  E  D  R  I  V  I  S  Y  T  G  D  G  S  Q  M  I  V  S  F  H  C  L  M  L  L  N  F  C  K  L  F  V  E  K  L  W  L  L  L  E  T  L  *  Q  E  I  K  C  S  H  W  C  A  F  Y  L  M :   R  P  F  L  *  T  Y  R  R  L  Q  T  Q  N  S  G  D  G  C  I  K  I  T  T  L  Q  S  W  P  S  G  L  R  S  *  S  N  P  M  T  Q  I  L  L  G  I  P  I  T  V  S  *  I  C  I  L  T  R  L  M  M  S  G  Q  V  R  L  R  K  L  I  L  S  *  S  L  E  A  N  G  S  L  G  H  F  C  T  T  K  T  I  S  S  L  D  V  T  N  A  I  K  R  M  *  Q  N  I  L  I  T  M  D  T  G  W  R  F  V  Q  L  S  R  P  F  *  T  C  R  N  *  R  V  D  W  *  C  *  G  H  S  P  L  H  I  L  R  M  G  I  G  I  T  E  G  I  V  I  E  Q  D  H  S  R  M  K  K  *  S  W  M  D  T  N  *  R  C  I  *  L  N  W  K  N  L  R  Q  Q  K  K  K  V  E  K  G  V  V  S  N  S  N  C  *  I  Q  L  K  Q  W  *  *  D  Q  M  D  I  Q  I  I  M  D  I  G  Q  M  K  R  N  C  L  I  V  Y  I  G  V  C  Q  A  L  L  I  L  G  M  S  F  Y  *  Q  L  *  R  W  K  E  M  N  Y  R  N  R  I  M  S  R  I  W  *  Q  T  Y  N  N  F  F  K  C  L  C  N  L  F  *  E  K  G  Y  K  F  F  V  K  K  F  Y  I  N  I  Y  F  *  V </second_frame>
            <third_frame>   W  C  S  R  V  V  *  *  L  *  K  S  Y  S  T  N  R  D  V  T  A  F  T  Q  N  *  L  L  F  I  *  F  Y  H  *  F  F  A  A  K  S  *  I  K  S  K  W  I  T  P  S  *  S  A  R  A  S  F  S  R  N  Y  *  R  *  S  *  H  *  L  F  G  E  N  R  D  K  A  A  N  M  *  Y  L  C  G  K  M  D  T  I  S  K  G  T  I  L  Y  K  *  K  *  L  C  D  R  *  S  T  E  L  Y  E  I  W  K  T  G  *  *  F  H  T  L  E  M  E  A  K  *  L  *  A  S  T  V  *  C  Y  S  I  S  A  N  C  S  W  K  N  F  G  F  C  W  R  L  S  S  K  K  S  N  A  V  T  G  V  H  S  I  *   : C  V  H  S  C  R  R  I  G  D  Y  R  H  K  I  Q  A  M  V  V  *  R  L  Q  L  Y  N  H  G  P  L  V  S  A  V  N  Q  I  L  *  L  R  S  Y  W  G  S  L  L  Q  S  H  E  F  V  S  *  Q  G  *  *  C  L  G  K  S  G  *  E  S  *  Y  Y  H  N  L  W  R  P  M  V  L  *  A  I  F  V  L  R  K  R  S  A  H  W  M  S  Q  M  Q  S  K  E  C  N  R  T  Y  S  L  L  W  I  Q  D  G  V  S  Y  S  F  Q  D  P  F  K  P  A  E  I  K  G  S  I  G  N  V  K  A  I  L  P  C  T  F  *  E  W  G  L  E  *  R  R  E  L  *  *  N  K  T  I  Q  E  *  R  N  E  V  G  W  I  R  I  E  D  V  Y  D  S  I  G  R  I  *  G  S  R  K  R  R  *  K  K  G  *  C  Q  I  Q  I  A  R  Y  N  *  S  N  G  N  E  T  R  W  T  S  K  S  L  W  T  L  A  K  *  K  E  I  A  *  L  C  T  L  V  Y  A  R  P  C  *  Y  L  E  *  A  F  I  S  N  F  K  D  G  R  R  *  I  I  E  T  E  L  C  L  E  F  G  N  K  H  I  I  T  F  S  N  V  C  V  I  C  F  R  K  K  G  I  S  F  L  *  R  S  F  I  S  I  Y  I  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106232" stop="105717"/>
                    <exon start="105556" stop="104780"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGVAELFDSFRKVILPIATLLLLLKISYSSFDSTTDSLLQNLESSQNGSLPLDQPEQVSPGITSASPSTNYSAKTGIRQQTCNIFVGKWIPYPKGPYYTNESNCVIDDRQNCMKYGRPDSDFIHWRWKPNDCELPLFDATQFLQIVRGKTLAFVGDSLARNQMQSLVCILSNASIPVDVSETTDTKFRRWLYKDYNFTIMALWSPQLIKSYDSDPTGDPYYSLMNLYLDKADDVWASQVEKADIIIISGGQWFFRPFLYYENDQLIGCHKCNQKNVTEHTHYYGYRMAFRTAFKTLLNLQKLKGRLVMLRPFSPAHFENGDWNNGGNCNRTRPFKNEEMKLDGYELKMYMTQLEEFKAAEKEGRKRGSVKFKLLDTTEAMVMRPDGHPNHYGHWPNEKKLPDCVHWCMPGPVDTWNELLLATLKMEGDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="112218" PGL_stop="109452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112218" e_stop="111524"/>
            <exon e_start="110443" e_stop="109452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.907"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="112218" e_stop="111524" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111523" i_stop="110444" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="110443" e_stop="109452" e_length="992"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112218" stop="111626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111658" stop="111524"/>
              <exon start="110443" stop="109788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="109483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110028" stop="109452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTATTTTGTACAGGGTCAAATGACAAGAAAAAAATAGGATTATCAAGTCACAAGTGTCAACATACATGTACAAAGTGCTGTCCCCTTAATTTCATGCACTCTGCATCTTTAACAACTTACTTTTCTCCGTGATTTCTGTCATCTCTTACTGCTACTACTACTTCTCTTTTTGAAATTTCAATAGAAGAAAATTAATTCTCAGAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAGCTCAAAAAACCCCAAGTATATTTATACTTTTAATTTTAGCAGTTGTTGTTCTGGGTCTTATCCCTCTTTACCACCCATTTAATTGGTACTCAGGAGGCTTAAGAATCCGAAATCCGTCTGAAATTTCACCCACATACTTTCCTTTGGAGGAGCAGAAGATAGAGTTTAAAGAAGCAGACAAGTGTGATATTTTCAGTGGAAAATGGATTTGGAATCCGGAGGCTCCATATTATACGAATGTGACTTGTACTGAAATCCATGACCACCAAAACTGTATGAAGCATGGAAGACCCGATAGTGATTATTTGAAGTGGAGATGGAAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGTTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGG : GTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAACGCATTTAG</gDNA_template>
            <first_frame> N  Y  F  V  Q  G  Q  M  T  R  K  K  *  D  Y  Q  V  T  S  V  N  I  H  V  Q  S  A  V  P  L  I  S  C  T  L  H  L  *  Q  L  T  F  L  R  D  F  C  H  L  L  L  L  L  L  L  L  F  L  K  F  Q  *  K  K  I  N  S  Q  K  W  S  F  P  L  G  N  T  P  L  Q  L  K  K  P  Q  V  Y  L  Y  F  *  F  *  Q  L  L  F  W  V  L  S  L  F  T  T  H  L  I  G  T  Q  E  A  *  E  S  E  I  R  L  K  F  H  P  H  T  F  L  W  R  S  R  R  *  S  L  K  K  Q  T  S  V  I  F  S  V  E  N  G  F  G  I  R  R  L  H  I  I  R  M  *  L  V  L  K  S  M  T  T  K  T  V  *  S  M  E  D  P  I  V  I  I  *  S  G  D  G  S  L  M  S  V  S  C  Q  Y  S  T  R  F  S  F  W  I  W  S  E  T  S  R  W  Q  L  W  V  I  Q  L  E  E  T  K  C  S  L  C  Y  A  S  C  P  G :   L  N  I  L  L  I  F  L  T  I  Q  I  N  L  S  K  S  T  N  T  Q  L  T  T  S  L  *  Q  C  I  G  H  H  F  W  F  Q  Q  K  K  *  M  Q  M  V  H  A  I  L  D  S  T  I  Y  T  *  M  K  Q  M  R  N  G  P  P  K  L  R  D  M  T  T  L  S  *  T  L  G  T  G  L  R  G  A  A  S  T  M  *  T  T  N  E  *  G  A  D  T  V  E  Y  Q  M  *  L  N  F  H  L  P  M  P  T  N  G  H  S  K  L  L  L  K  P  S  T  I  *  T  I  L  R  V  *  L  F  L  G  H  L  R  L  L  I  M  K  A  G  N  G  M  R  E  V  I  V  Q  G  Q  G  R  M  E  V  M  R  L  R  W  R  I  K  A  W  S  N  T  G  S  K  W  K  S  L  R  S  R  R  K  K  G  R  *  K  G  R  D  S  G  *  W  I  Q  R  E  P  C  *  *  D  Q  M  V  T  Q  V  N  M  G  I  G  Q  M  K  M  W  Q  M  T  V  C  I  G  A  C  L  V  L  L  I  L  G  L  I  S  C  F  I  C  S  R  W  R  P  S  D  P  L  R  K  I  F  N  E  R  A  K  L  Y  N  V  L  *  F  H  L  Y  L  G  F  T  S  Q  S  S  K  E  E  L  G  F  *  D  I  *  L  C  C  R  E  D  A  T  I  A  L  F  *  K  M  L  E  K  D  V  P  S  *  I  F  I  E  L  S  M  F  Y  *  T  H  L  </first_frame>
            <second_frame>  I  I  L  Y  R  V  K  *  Q  E  K  N  R  I  I  K  S  Q  V  S  T  Y  M  Y  K  V  L  S  P  *  F  H  A  L  C  I  F  N  N  L  L  F  S  V  I  S  V  I  S  Y  C  Y  Y  Y  F  S  F  *  N  F  N  R  R  K  L  I  L  R  N  G  A  S  L  W  E  I  L  H  F  S  S  K  N  P  K  Y  I  Y  T  F  N  F  S  S  C  C  S  G  S  Y  P  S  L  P  P  I  *  L  V  L  R  R  L  K  N  P  K  S  V  *  N  F  T  H  I  L  S  F  G  G  A  E  D  R  V  *  R  S  R  Q  V  *  Y  F  Q  W  K  M  D  L  E  S  G  G  S  I  L  Y  E  C  D  L  Y  *  N  P  *  P  P  K  L  Y  E  A  W  K  T  R  *  *  L  F  E  V  E  M  E  A  *  *  V  *  A  A  N  I  Q  P  V  S  V  F  G  F  G  Q  K  Q  V  G  G  N  C  G  *  F  S  W  K  K  P  N  A  V  S  V  M  P  L  V  P   : G  *  I  S  C  *  Y  F  *  Q  S  R  S  I  F  Q  K  V  Q  I  H  N  L  Q  L  H  S  S  N  V  L  V  T  I  F  G  F  N  K  R  S  R  C  R  W  S  M  P  Y  W  T  L  Q  S  I  P  R  *  S  R  *  E  M  D  H  Q  N  *  G  I  *  L  H  Y  L  K  R  W  A  L  V  C  A  V  Q  R  L  L  C  K  Q  P  T  S  R  V  Q  I  L  W  N  T  K  C  N  *  T  S  I  Y  L  C  L  P  T  G  I  R  N  Y  S  *  S  H  Q  Q  F  R  Q  F  *  G  C  S  Y  S  *  D  I  C  A  F  S  L  *  R  R  E  M  E  *  G  R  *  L  C  K  D  K  A  V  W  K  *  *  D  F  V  G  G  S  K  R  G  A  I  Q  D  P  S  G  R  V  *  G  R  G  E  R  R  E  D  E  R  E  E  I  Q  V  D  G  Y  N  A  S  H  V  D  E  T  R  W  S  P  K  *  I  W  A  L  A  K  *  K  C  G  K  *  L  C  A  L  V  L  A  W  S  Y  *  F  L  V  *  F  L  V  S  Y  V  Q  D  G  G  H  Q  I  P  *  G  K  S  S  M  R  E  Q  N  Y  T  M  Y  S  D  F  I  Y  I  *  D  S  R  L  S  H  L  K  R  N  S  V  S  K  I  Y  S  Y  V  A  V  K  M  Q  P  *  P  C  F  K  K  C  W  K  K  T  S  L  L  E  F  L  *  N  C  R  C  F  T  K  R  I  * </second_frame>
            <third_frame>   L  F  C  T  G  S  N  D  K  K  K  I  G  L  S  S  H  K  C  Q  H  T  C  T  K  C  C  P  L  N  F  M  H  S  A  S  L  T  T  Y  F  S  P  *  F  L  S  S  L  T  A  T  T  T  S  L  F  E  I  S  I  E  E  N  *  F  S  E  M  E  L  P  F  G  K  Y  S  T  S  A  Q  K  T  P  S  I  F  I  L  L  I  L  A  V  V  V  L  G  L  I  P  L  Y  H  P  F  N  W  Y  S  G  G  L  R  I  R  N  P  S  E  I  S  P  T  Y  F  P  L  E  E  Q  K  I  E  F  K  E  A  D  K  C  D  I  F  S  G  K  W  I  W  N  P  E  A  P  Y  Y  T  N  V  T  C  T  E  I  H  D  H  Q  N  C  M  K  H  G  R  P  D  S  D  Y  L  K  W  R  W  K  P  N  E  C  E  L  P  I  F  N  P  F  Q  F  L  D  L  V  R  N  K  S  V  A  I  V  G  D  S  V  G  R  N  Q  M  Q  S  L  L  C  L  L  S  R  :  V  E  Y  P  V  D  I  S  D  N  P  D  Q  S  F  K  K  Y  K  Y  T  T  Y  N  F  T  L  A  M  Y  W  S  P  F  L  V  S  T  K  E  V  D  A  D  G  P  C  H  T  G  L  Y  N  L  Y  L  D  E  A  D  E  K  W  T  T  K  I  E  G  Y  D  Y  I  I  L  N  A  G  H  W  F  A  R  C  S  V  Y  Y  V  N  N  Q  R  V  G  C  R  Y  C  G  I  P  N  V  T  E  L  P  S  T  Y  A  Y  Q  R  A  F  E  T  T  L  K  A  I  N  N  L  D  N  F  K  G  V  A  I  L  R  T  F  A  P  S  H  Y  E  G  G  K  W  N  E  G  G  D  C  A  R  T  R  P  Y  G  S  N  E  T  S  L  E  D  Q  S  V  E  Q  Y  R  I  Q  V  E  E  F  E  V  A  E  K  E  G  K  M  K  G  K  R  F  R  L  M  D  T  T  R  A  M  L  M  R  P  D  G  H  P  S  K  Y  G  H  W  P  N  E  N  V  A  N  D  C  V  H  W  C  L  P  G  P  I  D  S  W  S  D  F  L  F  H  M  F  K  M  E  A  I  R  S  L  E  E  N  L  Q  *  E  S  K  I  I  Q  C  T  L  I  S  F  I  F  R  I  H  V  S  V  I  *  R  G  T  R  F  L  R  Y  I  V  M  L  P  *  R  C  N  H  S  P  V  L  K  N  V  G  K  R  R  P  F  L  N  F  Y  R  T  V  D  V  L  L  N  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112021" stop="111524"/>
                    <exon start="110443" stop="109655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSEMELPFGKYSTSAQKTPSIFILLILAVVVLGLIPLYHPFNWYSGGLRIRNPSEISPTYFPLEEQKIEFKEADKCDIFSGKWIWNPEAPYYTNVTCTEIHDHQNCMKHGRPDSDYLKWRWKPNECELPIFNPFQFLDLVRNKSVAIVGDSVGRNQMQSLLCLLSRVEYPVDISDNPDQSFKKYKYTTYNFTLAMYWSPFLVSTKEVDADGPCHTGLYNLYLDEADEKWTTKIEGYDYIILNAGHWFARCSVYYVNNQRVGCRYCGIPNVTELPSTYAYQRAFETTLKAINNLDNFKGVAILRTFAPSHYEGGKWNEGGDCARTRPYGSNETSLEDQSVEQYRIQVEEFEVAEKEGKMKGKRFRLMDTTRAMLMRPDGHPSKYGHWPNENVANDCVHWCLPGPIDSWSDFLFHMFKMEAIRSLEENLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109581" PGL_stop="110249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109581" e_stop="110249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="109581" e_stop="110249" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109581" stop="110249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTCTTTAGATGACTGAGACGTGAATCCTAAATATAAATGAAATCAGAGTACATTGTATAATTTTGCTCTCTCATTGAAGATTTTCCTCAAGGGATCTGATGGCCTCCATCTTGAACATATGAAACAAGAAATCAGACCAAGAATCAATAGGACCAGGCAAGCACCAATGCACACAGTCATTTGCCACATTTTCATTTGGCCAATGCCCATATTTACTTGGGTGACCATCTGGTCTCATCAACATGGCTCGCGTTGTATCCATCAACCTGAATCTCTTCCCTTTCATCTTCCCTTCTTTCTCCGCGACCTCAAACTCTTCCACTTGGATCCTGTATTGCTCCACGCTTTGATCCTCCAACGAAGTCTCATTACTTCCATACGGCCTTGTCCTTGCACAATCACCTCCCTCATTCCATTTCCCGCCTTCATAATGAGAAGGCGCAAATGTCCTAAGAATAGCTACACCCTTAAAATTGTCTAAATTGTTGATGGCTTTAAGAGTAGTTTCGAATGCCCGTTGGTAGGCATAGGTAGATGGAAGTTCAGTTACATTTGGTATTCCACAGTATCTGCACCCTACTCGTTGGTTGTTTACATAGTAGACGCTGCACCGCGCAAACCAGTGCCCAGCGTTTAAGATAATGTAGTCATATCCCTCAATTTTG</gDNA_template>
            <first_frame> V  P  L  *  M  T  E  T  *  I  L  N  I  N  E  I  R  V  H  C  I  I  L  L  S  H  *  R  F  S  S  R  D  L  M  A  S  I  L  N  I  *  N  K  K  S  D  Q  E  S  I  G  P  G  K  H  Q  C  T  Q  S  F  A  T  F  S  F  G  Q  C  P  Y  L  L  G  *  P  S  G  L  I  N  M  A  R  V  V  S  I  N  L  N  L  F  P  F  I  F  P  S  F  S  A  T  S  N  S  S  T  W  I  L  Y  C  S  T  L  *  S  S  N  E  V  S  L  L  P  Y  G  L  V  L  A  Q  S  P  P  S  F  H  F  P  P  S  *  *  E  G  A  N  V  L  R  I  A  T  P  L  K  L  S  K  L  L  M  A  L  R  V  V  S  N  A  R  W  *  A  *  V  D  G  S  S  V  T  F  G  I  P  Q  Y  L  H  P  T  R  W  L  F  T  *  *  T  L  H  R  A  N  Q  C  P  A  F  K  I  M  *  S  Y  P  S  I  L </first_frame>
            <second_frame>  F  L  F  R  *  L  R  R  E  S  *  I  *  M  K  S  E  Y  I  V  *  F  C  S  L  I  E  D  F  P  Q  G  I  *  W  P  P  S  *  T  Y  E  T  R  N  Q  T  K  N  Q  *  D  Q  A  S  T  N  A  H  S  H  L  P  H  F  H  L  A  N  A  H  I  Y  L  G  D  H  L  V  S  S  T  W  L  A  L  Y  P  S  T  *  I  S  S  L  S  S  S  L  L  S  P  R  P  Q  T  L  P  L  G  S  C  I  A  P  R  F  D  P  P  T  K  S  H  Y  F  H  T  A  L  S  L  H  N  H  L  P  H  S  I  S  R  L  H  N  E  K  A  Q  M  S  *  E  *  L  H  P  *  N  C  L  N  C  *  W  L  *  E  *  F  R  M  P  V  G  R  H  R  *  M  E  V  Q  L  H  L  V  F  H  S  I  C  T  L  L  V  G  C  L  H  S  R  R  C  T  A  Q  T  S  A  Q  R  L  R  *  C  S  H  I  P  Q  F   </second_frame>
            <third_frame>   S  S  L  D  D  *  D  V  N  P  K  Y  K  *  N  Q  S  T  L  Y  N  F  A  L  S  L  K  I  F  L  K  G  S  D  G  L  H  L  E  H  M  K  Q  E  I  R  P  R  I  N  R  T  R  Q  A  P  M  H  T  V  I  C  H  I  F  I  W  P  M  P  I  F  T  W  V  T  I  W  S  H  Q  H  G  S  R  C  I  H  Q  P  E  S  L  P  F  H  L  P  F  F  L  R  D  L  K  L  F  H  L  D  P  V  L  L  H  A  L  I  L  Q  R  S  L  I  T  S  I  R  P  C  P  C  T  I  T  S  L  I  P  F  P  A  F  I  M  R  R  R  K  C  P  K  N  S  Y  T  L  K  I  V  *  I  V  D  G  F  K  S  S  F  E  C  P  L  V  G  I  G  R  W  K  F  S  Y  I  W  Y  S  T  V  S  A  P  Y  S  L  V  V  Y  I  V  D  A  A  P  R  K  P  V  P  S  V  *  D  N  V  V  I  S  L  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109625" stop="110065"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSTLYNFALSLKIFLKGSDGLHLEHMKQEIRPRINRTRQAPMHTVICHIFIWPMPIFTWVTIWSHQHGSRCIHQPESLPFHLPFFLRDLKLFHLDPVLLHALILQRSLITSIRPCPCTITSLIPFPAFIMRRRKCPKNSYTLKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="113704" PGL_stop="113377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113704" e_stop="113377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="113704" e_stop="113377" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113704" stop="113377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301233" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTATAGA</gDNA_template>
            <first_frame> K  *  I  W  A  L  A  K  C  Q  C  C  I  I  *  *  L  C  S  L  V  L  A  W  S  Y  *  F  L  G  *  Y  F  V  S  Y  V  Q  D  G  E  H  E  I  P  G  G  K  A  *  M  R  E  P  N  H  T  M  Y  S  D  F  F  S  C  F  I  Y  F  *  N  G  C  E  L  Q  R  N  S  V  T  W  I  V  L  V  E  L  Q  M  *  L  *  Y  C  *  K  S  W  G  K  K  S  L  V  E  F  L  *  </first_frame>
            <second_frame>  S  K  Y  G  H  W  P  N  A  N  V  V  L  Y  N  D  C  V  H  W  C  L  P  G  P  I  D  S  W  A  D  I  L  F  H  M  F  K  M  E  S  T  K  S  L  E  E  K  L  E  *  E  S  Q  I  I  Q  C  T  L  I  F  L  V  A  S  F  I  F  R  M  V  V  N  Y  R  G  T  L  L  H  G  S  F  W  L  S  C  K  C  N  Y  S  T  V  R  K  V  G  A  K  K  A  L  L  N  F  Y  R </second_frame>
            <third_frame>   V  N  M  G  I  G  Q  M  P  M  L  Y  Y  I  M  T  V  F  I  G  A  C  L  V  L  L  I  L  G  L  I  F  C  F  I  C  S  R  W  R  A  R  N  P  W  R  K  S  L  N  E  R  A  K  S  Y  N  V  L  *  F  F  *  L  L  H  L  F  L  E  W  L  *  I  T  E  E  L  C  Y  M  D  R  F  G  *  V  A  N  V  T  I  V  L  L  E  K  L  G  Q  K  K  P  C  *  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0108N03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="116227" PGL_stop="114068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116227" e_stop="115710"/>
            <exon e_start="114345" e_stop="114068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116227" e_stop="115710" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115709" i_stop="114346" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114345" e_stop="114068" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116227" stop="115710"/>
              <exon start="114345" stop="114068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116161" stop="115710"/>
              <exon start="114345" stop="114188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115774" stop="115710"/>
              <exon start="114345" stop="114083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG : GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</gDNA_template>
            <first_frame> L  H  *  R  N  F  H  K  K  K  W  S  F  P  L  G  N  T  P  L  Q  P  K  E  P  Q  E  Y  S  Y  F  *  F  *  Q  L  S  F  W  V  L  S  L  F  I  T  H  L  I  G  T  Q  Q  I  *  Q  P  N  I  P  L  K  F  H  P  I  T  M  L  L  R  S  K  R  *  R  L  K  S  R  R  H  A  I  S  S  P  A  N  G  S  G  I  R  M  L  H  I  T  R  I  *  P  V  M  R  S  M  N  T  K  I  V  S  S  M  G  D  P  I  R  I  I  *  S  G  D  G  S  L  M  G  V  S  Y  L  F  S  T  R  F  C  F  *  I  W  L  G  T  N  R  W  H  S  S  V  I  Q  L  E  E  I  K  C  S  R  *  Y  A  Y  W  L  G :   W  N  I  L  S  I  Y  L  I  I  Q  M  K  L  S  K  N  T  N  T  Q  L  T  T  L  H  *  Q  H  I  G  H  H  F  W  C  Q  Q  K  K  L  M  Q  M  V  Q  A  I  L  E  F  T  I  F  T  L  T  K  Q  M  R  N  G  P  L  K  L  K  D  M  T  T  S  S  *  M  Q  A  T  G  L  P  G  S  V  Y  T  L  R  T  T  N  </first_frame>
            <second_frame>  S  I  E  E  I  S  T  K  K  N  G  A  S  L  W  E  I  L  H  F  N  P  K  N  P  K  N  I  L  T  F  S  F  S  S  C  R  F  G  Y  Y  P  S  L  S  P  I  *  L  V  P  S  R  F  S  N  P  T  S  L  *  N  F  T  Q  L  P  C  C  *  G  A  K  D  K  D  *  R  A  G  D  M  R  Y  L  H  R  R  M  G  L  E  S  G  C  S  I  L  H  E  Y  D  L  L  C  D  P  *  T  P  K  L  Y  Q  V  W  E  T  R  Y  G  L  F  E  V  E  M  E  A  *  W  V  *  A  T  Y  F  R  P  V  S  V  F  R  F  G  *  E  Q  I  V  G  T  R  R  *  F  S  W  K  K  S  N  A  V  V  D  M  P  I  G  S   : G  G  I  S  C  R  Y  I  *  *  S  R  *  S  F  Q  K  I  Q  I  H  N  L  Q  L  Y  I  S  N  I  L  V  T  I  F  G  V  N  K  R  S  *  C  R  W  S  K  P  Y  W  S  L  Q  S  S  P  *  Q  S  R  *  E  M  D  H  *  N  *  K  I  *  L  R  H  L  K  C  R  P  L  V  C  P  D  Q  C  I  L  *  E  Q  P  T </second_frame>
            <third_frame>   P  L  K  K  F  P  Q  K  K  M  E  L  P  F  G  K  Y  S  T  S  T  Q  R  T  P  R  I  F  L  L  L  V  L  A  V  V  V  L  G  I  I  P  L  Y  H  P  F  N  W  Y  P  A  D  L  A  T  Q  H  P  S  E  I  S  P  N  Y  H  A  A  E  E  Q  K  I  K  I  K  E  P  E  T  C  D  I  F  T  G  E  W  V  W  N  P  D  A  P  Y  Y  T  N  M  T  C  Y  A  I  H  E  H  Q  N  C  I  K  Y  G  R  P  D  T  D  Y  L  K  W  R  W  K  P  N  G  C  E  L  P  I  F  D  P  F  L  F  L  D  L  V  R  N  K  S  L  A  L  V  G  D  S  V  G  R  N  Q  M  Q  S  L  I  C  L  L  A  R  :  V  E  Y  P  V  D  I  S  D  N  P  D  E  A  F  K  K  Y  K  Y  T  T  Y  N  F  T  L  A  T  Y  W  S  P  F  L  V  S  T  K  E  A  D  A  D  G  P  S  H  T  G  V  Y  N  L  H  L  D  K  A  D  E  K  W  T  T  E  I  E  R  Y  D  Y  V  I  L  N  A  G  H  W  F  A  R  I  S  V  Y  F  E  N  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0108N03.3" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116225" stop="115710"/>
                    <exon start="114345" stop="114070"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLKKFPQKKMELPFGKYSTSTQRTPRIFLLLVLAVVVLGIIPLYHPFNWYPADLATQHPSEISPNYHAAEEQKIKIKEPETCDIFTGEWVWNPDAPYYTNMTCYAIHEHQNCIKYGRPDTDYLKWRWKPNGCELPIFDPFLFLDLVRNKSLALVGDSVGRNQMQSLICLLARVEYPVDISDNPDEAFKKYKYTTYNFTLATYWSPFLVSTKEADADGPSHTGVYNLHLDKADEKWTTEIERYDYVILNAGHWFARISVYFENNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="125663" PGL_stop="126352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125663" e_stop="125926"/>
            <exon e_start="126342" e_stop="126352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.905"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="125663" e_stop="125926" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="125927" i_stop="126341" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="126342" e_stop="126352" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125663" stop="125926"/>
              <exon start="126342" stop="126352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAGGCACAGGTGTACGGTAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAAG : AGAATGAATAC</gDNA_template>
            <first_frame> V  Q  A  Q  V  Y  G  R  A  T  S  S  L  L  Q  L  S  G  R  Q  H  S  S  G  V  W  *  V  L  M  P  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  R  L  C  I  G  A  I  L  A  D  I  Q  L  I  F  N  E  L  F  L  S  V  A  Y  L  L  K  :  R  M  N   </first_frame>
            <second_frame>  C  R  H  R  C  T  V  E  L  Q  V  L  C  C  S  Y  L  D  V  S  I  H  P  E  F  G  R  S  L  C  L  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  V  G  H  V  P  L  A  F  L  S  C  F  G  S  D  F  V  L  V  L  F  W  P  I  Y  N  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  *  R :   E  *  I  </second_frame>
            <third_frame>   A  G  T  G  V  R  *  S  Y  K  F  F  V  A  A  I  W  T  S  A  F  I  R  S  L  V  G  P  Y  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  W  G  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  I  N  I  *  *  I  I  S  F  S  C  L  S  L  K   : E  N  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0108N03.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 141 chains have been computed
$ 
$ memory statistics:
$ 711848 bytes spliced alignments in total
$ 75 spliced alignments have been stored
$ 9491 bytes was the average size of a spliced alignment
$ 31328 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1491 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 162 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:00:59
-->
