<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:41:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355752" ref_strand="+" ref_description="SGN-E355752 [cLHT-18-B11]">
      <seq>tttctctcaacagaggaaaccttaaattaccaaacttcagttaattaaacacaaaaatggattgggttagaggtgaaacagttggccatggaagctttggcaaagttagttttgtgataccgagaaaccagagtactctgttttctccatcaatggtggttaagtcttgttccgcttcctgctcagctactttgatgaacgagaagataatcttggatgaacttaaggggtgcccacaaataatcaattgcgttggtgacagctacagttatgaaaatggcgaaaagctatacaatgtcttgttggagtatgcttgtgggggtgctttgtcggataaattaaagaaatccggtgatcagaggttgccggagtttgaagtcagggattacacaaaggggttactcagagggattcagtatatccacaagaatggttttgttcactgcgacataaagcttccaaacattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="746" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="456" g_stop="1" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E355752" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="456" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCAACAGACAGAAAGAAACCTTAAATTACCAAACTTCAGTTAATTAAACACAAAAATGGATTGGGTTAGAGGTGAAACAGTTGGCCATGGAAGCTTTGGCAAAGTTAGTTTTGTGATTCCGAGAAACCAGAGTACTCTGTTTTCTCCATCAATGGTGGTTAAGTCTTGTTCCGCTTCCTGCTCAGCTACTTTGATGAACGAGAAGATAATCTTGGATGAACTTAAGGGGTGCCCACAAATAATCAATTGCGTTGGTGACAGCTACAGTTATGAAAATGGCGAAAAGCTATACAATGTCTTGTTGGAGTATGCTTGTGGGGGTGCTTTGTCGGATAAATTAAAGAATTCCGGTGATCAGAGGTTGCCGGAGCTTGAAGTCAGGGAGTACACAAAGGGGTTACTCAGAGGGATTCATTATATCCACAAGAATGGTTTTGTTCACTGCGACAT</genome_strand>
        <mrna_strand>TTTCTCTCAACAG--AG---GAAACCTTAAATTACCAAACTTCAGTTAATTAAACACAAAAATGGATTGGGTTAGAGGTGAAACAGTTGGCCATGGAAGCTTTGGCAAAGTTAGTTTTGTGATACCGAGAAACCAGAGTACTCTGTTTTCTCCATCAATGGTGGTTAAGTCTTGTTCCGCTTCCTGCTCAGCTACTTTGATGAACGAGAAGATAATCTTGGATGAACTTAAGGGGTGCCCACAAATAATCAATTGCGTTGGTGACAGCTACAGTTATGAAAATGGCGAAAAGCTATACAATGTCTTGTTGGAGTATGCTTGTGGGGGTGCTTTGTCGGATAAATTAAAGAAATCCGGTGATCAGAGGTTGCCGGAGTTTGAAGTCAGGGATTACACAAAGGGGTTACTCAGAGGGATTCAGTATATCCACAAGAATGGTTTTGTTCACTGCGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244617" ref_strand="+" ref_description="SGN-E244617 [cLED-38-J4]">
      <seq>tttttctctcaacagacagaaagaaaccttaaattaccaaacttcagttaattaaacacaaaaatggattgggttagaggtgaaacagttggccatggaagctttggcaaagttagttttgtgattccgagaaaccagagtactctgttttctccatcaatggtggttaagtcttgttccgcttcctgctcagctactttgatgaacgagaagataatcttggatgaacttaaggggtgcccacaaataatcaattgcgttggtgacagctacagttatgaaaatggcgaaaagctatacaatgtcttgttggagtatgcttgtgggggtgctttgtcggataaattaaagaattccggtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="758" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="458" g_stop="95" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E244617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="458" e_stop="95"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCAACAGACAGAAAGAAACCTTAAATTACCAAACTTCAGTTAATTAAACACAAAAATGGATTGGGTTAGAGGTGAAACAGTTGGCCATGGAAGCTTTGGCAAAGTTAGTTTTGTGATTCCGAGAAACCAGAGTACTCTGTTTTCTCCATCAATGGTGGTTAAGTCTTGTTCCGCTTCCTGCTCAGCTACTTTGATGAACGAGAAGATAATCTTGGATGAACTTAAGGGGTGCCCACAAATAATCAATTGCGTTGGTGACAGCTACAGTTATGAAAATGGCGAAAAGCTATACAATGTCTTGTTGGAGTATGCTTGTGGGGGTGCTTTGTCGGATAAATTAAAGAATTCCGGTGATC</genome_strand>
        <mrna_strand>TTTTTCTCTCAACAGACAGAAAGAAACCTTAAATTACCAAACTTCAGTTAATTAAACACAAAAATGGATTGGGTTAGAGGTGAAACAGTTGGCCATGGAAGCTTTGGCAAAGTTAGTTTTGTGATTCCGAGAAACCAGAGTACTCTGTTTTCTCCATCAATGGTGGTTAAGTCTTGTTCCGCTTCCTGCTCAGCTACTTTGATGAACGAGAAGATAATCTTGGATGAACTTAAGGGGTGCCCACAAATAATCAATTGCGTTGGTGACAGCTACAGTTATGAAAATGGCGAAAAGCTATACAATGTCTTGTTGGAGTATGCTTGTGGGGGTGCTTTGTCGGATAAATTAAAGAATTCCGGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286251" ref_strand="+" ref_description="SGN-E286251 [cLES-11-L13]">
      <seq>ctcagtcatggagtctccaatacttctcttccttatcatcttcttattcacgattggcaaaaatgcagttgttgttgaagcagaagttgatagatttggtttagaacaagtggtgagtgaagattttgagttgccaatgggaatgtcgggtgatgatgagatccagttggatggaaatggaagatctctattgtggaacaaattcaagtactacatttcgtacggagcattgtcagctaacagaatcccctgcccaccacggtctggcagatcgtattacacgcaccattgttatcatgctacaggtccagctcatccttacactagaggttgctctgctatcactcgttgccgtagatgaacaattaatatgattttctatttattattttatcatctatgcattatagtaccttatttgtcatttctgtgatatggcttgcgaattgggagctagctagctttgttctggtagatctactacgtatggactgatatttggtggaattcttatgtctttgtttaggtaaaattagtttcaattgtgtatgtgttttcctatacactcactctaattttctctttctattcatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="8460" stop="7263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8160" g_stop="7563" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E286251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8160" e_stop="7563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCATGGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCTATACACTCACTCTAATTTTCTCTTTCTATTCATATATG</genome_strand>
        <mrna_strand>CTCAGTCATGGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTGTCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCTATACACTCACTCTAATTTTCTCTTTCTATTCATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342276" ref_strand="+" ref_description="SGN-E342276 [cTOF-8-C12]">
      <seq>aatacttctcttccttatcatcttcttattcacgattggcaaaaatgcagttgttgttgaagcagaagttgatagatttggtttagaacaagtggtgagtgaagattttgagttgccaatgggaatgtcgggtgatgatgagatccagttggatggaaatggaagatctctattgtggaacaaattcaagtactacatttcgtacggagcattatcagctaacagaatcccctgcccaccacggtctggcagatcgtattacacgcaccattgttatcatgctacaggtccagctcatccttacactagaggttgctctgctatcactcgttgccgtagatgaacaattaatatgattttctatttattattttatcatctatgcattatagtaccttatttgtcatttctgtgatatggcttgcgaattgngagctagctagctttgttctggtagatctactacgtatggactgatatttggtggaattcttatgtctttgtttangtaaaattagtttcaattgtgtatgtgttttcctataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="8442" stop="7296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8142" g_stop="7594" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E342276" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8142" e_stop="7594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCTATACACT</genome_strand>
        <mrna_strand>AATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGNGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTANGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCTATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551709" ref_strand="+" ref_description="SGN-E551709 [cTSB-1-J2]">
      <seq>ggagtctccaatacttctcttccttatcatcttcttattcacgattggcaaaaatgcagttgttattgaagcagaagttgatagatttggtttagaacaagtggtgagtgaagattttgagttgccaatgggaatgtcgggtgatgatgagatccagttggatggaaatggaagatctctattgtggaacaaattcaagtactacatttcgtacggagcattatcagctaacagaatcccctgcccaccacggtctggcagatcgtattacacgcaccattgttatcatgctacaggtccagctcatccttacactagaggttgctctgctatcactcgttgccgtagatgaacaattaatatgattttctatttattattttatcatctatgcattatagtaccttatttgtcatttctgtgatatggcttgcgaattgggagctagctagctttgttctggtagatctactacgtatggactgatatttggtggaattcttatgtctttgtttaggtaaaattagtttcaattgtgtatgtgttttcctataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="8451" stop="7296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8151" g_stop="7601" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="587"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E551709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8151" e_stop="7601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCT</genome_strand>
        <mrna_strand>GGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTATTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348120" ref_strand="+" ref_description="SGN-E348120 [cTOF-31-P8]">
      <seq>tttccaatttttttttgcatacaaacctcagtcatggagtctccaatacttctcttccttatcatcttcttattcacgattggcaaaaatgcagttgttgttgaagcagaagttgatagatttggtttagaacaagtggtgagtgaagattttgagttgccaatgggaatgtcgggtgatgatgagatccagttggatggaaatggaagatctctattgtggaacaaattcaagtactacatttcgtacggagcattatcagctaacagaatcccctgcccaccacggtctggcagatcgtattacacgcaccattgttatcatgctacaggtccagctcatccttacactagaggttgctctgctattactcgttgccgtagatgaacaattaatatgattttctatttattattttatcatctatgcattatagtaccttatttgtcatttctgtgatatggcttgcgaattgggagctagctagctttgttctgggagatctactacgtatggactgatatttggtggaattcttatgtgtttgtttaggtaaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="8486" stop="7324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8186" g_stop="7624" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E348120" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8186" e_stop="7624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAATTTTTTTTTGCATACAAACCTCAGTCATGGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGT</genome_strand>
        <mrna_strand>TTTCCAATTTTTTTTTGCATACAAACCTCAGTCATGGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATTACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGGAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTGTTTGTTTAGGT-AAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713748" ref_strand="+" ref_description="SGN-E713748 [FB09CB09]">
      <seq>cctatacttctcttccttatcatcttcttattcacgattggcaaaaatgcagttgttgttgaagcagaagttgatagatttggtttagaacaagtggtgagtgaagattttgagttgccaatgggaatgtcgggtgatgatgagatccagttggatggaaatggaagatctctattgtggaacaaattcaagtactacatttcgtacggagcattgtcagctaacagaatcccctgcccaccacggtctggcagatcgtattacacgcaccattgttatcatgctacaggtccagctcatccttacactagaggttgctctgctatcactcgttgccgtagatgaacaattaatatgattttctatttattattttatcatctatgcattatagtaccttatttgtcatttctgtgatatggcgtgcgaattgggagctagctagctttgttctggtagatctactacgtatggactgatatttggtggaattcttatgtctttgtttaggtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="8444" stop="7329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8144" g_stop="7635" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="532"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E713748" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8144" e_stop="7635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAG</genome_strand>
        <mrna_strand>CCTATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTGTCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCGTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544551" ref_strand="+" ref_description="SGN-E544551 [TUS-66-P3](-)">
      <seq>agcaacttcaatcactagagcaagccgcggttaataataggccgatgatttctggattttcaacagcaatgtcatcatcaggggggccaatgaattataattcaagctctattagggcatgccagcctcattaatccatgatctctggtgcacaaatgcttagttaaaataaaatgaaaataacatttgttaaagaatgacaaaagtctcacatcagtggttaatgagatggatagacttcttataagggttggacaatcctcctccctttgatctagcttttggggtgtgagttaggcctaagacctaatttcacagtttctacgcagcgtcctgatcattaccatgctaatgagtaaaaaaaaatttttgtaaagatttggttaaatggtgtgtattttccagcctcattcttcaatcccaaaggctagtcttaggtttctcaatttgtgcaatgttaactttgtgcgagaactatgctaattttttctgtatcgttccaatatcataagggactaggtttgccttgtgtttacaattccagtcttgcgctagaagcaaggcaaatagtgagcagagttggacattttttatttaaaaggtgtgggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="11005" stop="9795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10705" g_stop="10095" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E544551" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10705" e_stop="10095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTTCAATCACTAGAGCAAGCCGCGGTTAATAATAGGCCGATGATTTCTGGATTTTCAACAGCAATGTCATCACCAGGGGGGCCAATGAATTATAATTCAAGCTCTATTAGGGCATGCCAGCCTCATCAATCCATGAACTCTGGTGCACAAATGCTTAGTTAAAATAAAATGAAAATAACATTTGTTAAAGAATGACAAAAGTCTCACATCAGTGGTTAATGAGATGGATAGACTTCTTATAAGGGTTGGACAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCCTAAGACCTAATTTCACAGTTTCTACGCAGCGTCCTGATCATTACCATGCTAATGAGTAATGACTACTTTTTGTAAAGATTTGGTTAAATGGTGTGTATTTTCCAGCCTCATTCTTCAATCCCAAAGGCTAGTCTTAGGTTTCTCAATTTGTGCAATGTTAACTTTGTGCGAGAACTATGCTAATTTTTTCTGTATCGTTCCAATATCATAAGGGACTAGGTTTGCCTTGTGTTTACAATTCCAGTCTTGCGCTAGAAGCAAGGCAAATAGTGAGCAGAGTTGGACATTTTTTATTTAAAAGGTGTGGGTTC</genome_strand>
        <mrna_strand>AGCAACTTCAATCACTAGAGCAAGCCGCGGTTAATAATAGGCCGATGATTTCTGGATTTTCAACAGCAATGTCATCATCAGGGGGGCCAATGAATTATAATTCAAGCTCTATTAGGGCATGCCAGCCTCATTAATCCATGATCTCTGGTGCACAAATGCTTAGTTAAAATAAAATGAAAATAACATTTGTTAAAGAATGACAAAAGTCTCACATCAGTGGTTAATGAGATGGATAGACTTCTTATAAGGGTTGGACAATCCTCCTCCCTTTGATCTAGCTTTTGGGGTGTGAGTTAGGCCTAAGACCTAATTTCACAGTTTCTACGCAGCGTCCTGATCATTACCATGCTAATGAGTAAAAAAAAATTTTTGTAAAGATTTGGTTAAATGGTGTGTATTTTCCAGCCTCATTCTTCAATCCCAAAGGCTAGTCTTAGGTTTCTCAATTTGTGCAATGTTAACTTTGTGCGAGAACTATGCTAATTTTTTCTGTATCGTTCCAATATCATAAGGGACTAGGTTTGCCTTGTGTTTACAATTCCAGTCTTGCGCTAGAAGCAAGGCAAATAGTGAGCAGAGTTGGACATTTTTTATTTAAAAGGTGTGGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544552" ref_strand="+" ref_description="SGN-E544552 [TUS-66-P3]">
      <seq>gtgtggtatcccttttagcccatctttcattctaatatttctatatatcctcttgtttttttatttttaccttacaaaaacaaatcatggatttacaaaatattgctcactcactagaacttggattctccaatagcaatattgaaatgatacctttacaatcaccactccataactccaattacttaatgaattctcctccatctaatttctcattcatgggcaatccaattgaagagccagccgcgatgccaatactctcatcgatcgatgaaattatagcatcgactcatggtaatggaaatgattactcatgtttgcagaggaggaattctatggaggctatgagggagatgatttttcgtatcgcgatgatgcaaccaattcacattgatccagaatcagttaaacctcccaagaggaaaaatgttaagatatcgaaggatccacagagtgtggcagccaggcatcggagggaacgaataagcgaaaggataaggattttgcaaagactagtccctggaggaactaaaatggatactgcttcaatgttagatgaggctgtccattatgttaagtttttaaagaagcaacttcaatcactagagcaagccgcggttaataataggccgatgatttctggattttcaacagcaatgtcatcaccaggggggccaatgaattataattcaagctctattagggcatgccagcctcatcaatccatgaactctggtgcacaaatgcttagttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="11593" stop="10238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11293" g_stop="10538" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E544552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11293" e_stop="10538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGACTAGTCCCTGGAGGAACTAAAATGGATACTGCTTCAATGTTAGATGAGGCTGTCCATTATGTTAAGTTTTTAAAGAAGCAACTTCAATCACTAGAGCAAGCCGCGGTTAATAATAGGCCGATGATTTCTGGATTTTCAACAGCAATGTCATCACCAGGGGGGCCAATGAATTATAATTCAAGCTCTATTAGGGCATGCCAGCCTCATCAATCCATGAACTCTGGTGCACAAATGCTTAGTTAAA</genome_strand>
        <mrna_strand>GTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGACTAGTCCCTGGAGGAACTAAAATGGATACTGCTTCAATGTTAGATGAGGCTGTCCATTATGTTAAGTTTTTAAAGAAGCAACTTCAATCACTAGAGCAAGCCGCGGTTAATAATAGGCCGATGATTTCTGGATTTTCAACAGCAATGTCATCACCAGGGGGGCCAATGAATTATAATTCAAGCTCTATTAGGGCATGCCAGCCTCATCAATCCATGAACTCTGGTGCACAAATGCTTAGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307777" ref_strand="+" ref_description="SGN-E307777 [cLEY-16-H6]">
      <seq>tgtggtatcccttttagcccatctttcattctaatatttctatatatcctcttgtttttttatttttaccttacaaaaacaaatcatggatttacaaaatattgctcactcactagaacttggattctccaatagcaatattgaaatgatacctttacaatcaccactccataactccaattacttaatgaattctcctccatctaatttctcattcatgggcaatccaattgaagagccagccgcgatgccaatactctcatcgatcgatgaaattatagcatcgactcatggtaatggaaatgattactcatgtttgcagaggaggaattctatggaggctatgagggagatgatttttcgtatcgcgatgatgcaaccaattcacattgatccagaatcagttaaacctcccaagaggaaaaatgttaagatatcgaaggatccacagagtgtggcagccaggcatcggagggaacgaataagcgaaaggataaggattttgcaaagactagtccctggaggaactaaaatggatactgcttcaatgttagatgaggctgtccattatgttaagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="11592" stop="10411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11292" g_stop="10711" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E307777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11292" e_stop="10711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGACTAGTCCCTGGAGGAACTAAAATGGATACTGCTTCAATGTTAGATGAGGCTGTCCATTATGTTAAGTTTTT</genome_strand>
        <mrna_strand>TGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGACTAGTCCCTGGAGGAACTAAAATGGATACTGCTTCAATGTTAGATGAGGCTGTCCATTATGTTAAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266405" ref_strand="+" ref_description="SGN-E266405 [cLEI-3-B15]">
      <seq>gaacacttctcatagtgtggtatcccttttagcccatctttcattctaatatttctatatatcctcttgtttttttatttttaccttacaaaaacaaatcatggatttacaaaatattgctcactcactagaacttggattctccaatagcaatattgaaatgatacctttacaatcaccactccataactccaattacttaatgaattctcctccatctaatttctcattcatgggcaatccaattgaagagccagccgcgatgccaatactctcatcgatcgatgaaattatagcatcgactcatggtaatggaaatgattactcatgtttgcagaggaggaattctatggaggctatgagggagatgatttttcgtatcgcgatgatgcaaccaattcacattgatccagaatcagttaaacctcccaagaggaaaaatgttaagatatcgaaggatccacagagtgtggcagccaggcatcggagggaacgaataagcgaaaggataaggattttgcaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="11607" stop="10481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11307" g_stop="10781" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E266405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11307" e_stop="10781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTTCTCATAGTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGAC</genome_strand>
        <mrna_strand>GAACACTTCTCATAGTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266172" ref_strand="+" ref_description="SGN-E266172 [cLEI-3-A19]">
      <seq>gaacacttctcatagtgtggtatcccttttagcccgtctttcattctaatatttctatatatcctcttgtttttttatttttaccttacaaaaacaaatcatggatttacaaaatattgctcactcactagaacttggattctccaatagcaatattgaaatgatacctttacaatcaccactccataactccaattacttaatgaattctcctccatctaatttctcattcatgggcaatccaattgaagagccagccgcgatgccaatactctcatcgatcgatgaaattatagcatcgactcatggtaatggaaatgattactcatgtttgcagaggaggaattctatggaggctatgagggagatgatttttcgtatcgcgatgatgcaaccaattcacattgatccagaatcagttaaacctcccaagaggaaaaatgttaagatatcgaaggatccacagagtgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="11607" stop="10534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11307" g_stop="10834" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E266172" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11307" e_stop="10834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTTCTCATAGTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGC</genome_strand>
        <mrna_strand>GAACACTTCTCATAGTGTGGTATCCCTTTTAGCCCGTCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316591" ref_strand="+" ref_description="SGN-E316591 [cTOA-25-F22]">
      <seq>acaatacaagctggaatgcacttctcttctataaataaataaataaattactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21756" stop="25616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22056" g_stop="22460" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="602" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="636" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25212" g_stop="25316" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="741" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E316591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22056" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATACAAGCTGGAATGCACTTCTCTTCTATAAATAAATAAATAAATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTG</genome_strand>
        <mrna_strand>ACAATACAAGCTGGAATGCACTTCTCTTCTATAAATAAATAAATAAATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703595" ref_strand="+" ref_description="SGN-E703595 [FA21DG05]">
      <seq>aaataaattactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattccccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21796" stop="25761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22096" g_stop="22460" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="562" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="596" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25212" g_stop="25461" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="847" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E703595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22096" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATT-CCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAA</genome_strand>
        <mrna_strand>AAATAAATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689993" ref_strand="+" ref_description="SGN-E689993 [LH_Ea02F15]">
      <seq>ccttttaactttaccacataggtaatcatcgatctgcagtatctggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattatatttggcaaaacttttattttccggtaaaaaattggaacgaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagcccacaagattttactcgcaaccgctaaacctttagccggattggggaatgccattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttactatgtagagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggatacaagagatgatctggattttagtaagaatgttggaggacgtagaaaatatgatgagggaatcagcatgatggctgcgaaagcaacttactagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaacagaaagctacaacacaagcattcgtgcttctagataaaagcgtggaccctgagctgattgttgttgcatttagaggaactgaattctttaattctgatgattggatctccgactttaatctctcttggaatgacattcccggcatgggcaaagtccatgccggattcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21819" stop="25689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22098" g_stop="22460" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="561" r_length="197" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="595" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25212" g_stop="25391" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="775" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E689993" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22098" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTACTTTACCAAATA-ATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGA</genome_strand>
        <mrna_strand>CCTTTTAACTTTACCACATAGGTAATCATCGATCTGCAGTATCTGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTATATTTGGCAAAACTTTTATTTTCCGGTAAAAAATTGGAACGAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGCCCACAAGATTTTACTCGCAACCGCTAAACCTTTAGCCGGATTGGGGAATGCCATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTACTAT...............................................................................GTAGAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATACAAGAGATGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAAATATGATGAGGGAATCAGCATGATGGCTGCGAAAGCAACTTACTAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAACAGAAAGCTACAACACAAGCATTCGTGCTTCTAGATAAAAGCGTGGACCCTGAGCTGATTGTTGTTGCATTTAGAGGAACTGAATTCTTTAATTCTGATGATTGGATCTCCGACTTTAATCTCTCTTGGAATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377649" ref_strand="+" ref_description="SGN-E377649 [TUS-20-K24]">
      <seq>attactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgggtgggccggaaaataaaaggtcgtgagacaaattacccgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21802" stop="25261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22102" g_stop="22460" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="557" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="591" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="24918" i_length="1602">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24919" g_stop="24961" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="634" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E377649" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22102" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="24919" e_stop="24961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTG-AAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGG</genome_strand>
        <mrna_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232100" ref_strand="+" ref_description="SGN-E232100 [cLED-7-B18]">
      <seq>attactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaacgaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21802" stop="23038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22102" g_stop="22460" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="556" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E232100" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22102" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG</genome_strand>
        <mrna_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAACGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244725" ref_strand="+" ref_description="SGN-E244725 [cLED-38-D3]">
      <seq>attactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21802" stop="22932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22102" g_stop="22460" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22632" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="452" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E244725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22102" e_stop="22460"/>
          <exon e_start="22540" e_stop="22632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATG</genome_strand>
        <mrna_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240665" ref_strand="+" ref_description="SGN-E240665 [cLED-21-K1]">
      <seq>attacttttccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21802" stop="22925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22102" g_stop="22460" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22625" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="445" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E240665" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22102" e_stop="22460"/>
          <exon e_start="22540" e_stop="22625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGT</genome_strand>
        <mrna_strand>ATTACTTTTCCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242577" ref_strand="+" ref_description="SGN-E242577 [cLED-30-P3]">
      <seq>attactttaccaaataataatcatcgatctgcagtatatggcgagcaatagttgcaacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21802" stop="22763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22102" g_stop="22460" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22546" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="366" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E242577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22102" e_stop="22460"/>
          <exon e_start="22540" e_stop="22546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGC</genome_strand>
        <mrna_strand>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338638" ref_strand="+" ref_description="SGN-E338638 [cTOE-15-H9]">
      <seq>aacaaatctttctgtagcaactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtacaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21857" stop="25577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22157" g_stop="22460" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="501" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="535" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25212" g_stop="25277" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="601" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E338638" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22157" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGA</genome_strand>
        <mrna_strand>AACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTACAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210750" ref_strand="+" ref_description="SGN-E210750 [cLEC-68-M11]">
      <seq>aactatatgttgctaaagccagaagaatgtagcgtattagatttggcaaaacttttactttccggtaaaaaattgggacaaaaagacttcatcgactgccctaatgaagaaatgactaaggagcctttgtcacgtagatgggttatatttttatctatactagtccagaagattttactcgcaactgctaagcctttagctggattgggcaatgctattgagtactggcttaaccttcaaaacgtcaatggcggattcttccgtcttcttttcaaatccttaatatgtaaagctgtatcaccggataaggaatcagctgcgtacttgtcatttattggaaatttggataaaagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaagagcctgggatggcccaaaatattgtacaaactgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="21875" stop="25749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22175" g_stop="22460" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22540" g_stop="22736" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="483" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="517" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25212" g_stop="25449" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="753" r_length="236" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E210750" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22175" e_stop="22460"/>
          <exon e_start="22540" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATATGTACGCATTTTATTTTTTTGTCCAATACTTTTTCTTCTTTTAGATCTGTAGTACTGATATTTATGAACAATAATTGTAGGTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATAC</genome_strand>
        <mrna_strand>AACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT...............................................................................GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTAC-AAAGAGCCTGGGATGGCCC-AAAATATTGTACAAACTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231550" ref_strand="+" ref_description="SGN-E231550 [cLED-4-N9]">
      <seq>aagagttgatctggattttagtaagaatgttggaggacgtagaagatatgatgaaggaatcagcatgatggctgcaaaagcagcttatgagaacaaagcatatgttgaaactactgtcaaccatcattggaagatggatctggtgggatcatttgacttctggaatgattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactntaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="22304" stop="25846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22604" g_stop="22736" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23283" g_stop="23316" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="167" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25212" g_stop="25546" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="502" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E231550" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22604" e_stop="22736"/>
          <exon e_start="23283" e_stop="23316"/>
          <exon e_start="25212" e_stop="25546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAGGTAAACTACCTGAGCTAACATATTGGGTATGAACCAAAATGTTTTCTAGTTTTTTACTTACTGTTTTTGTTAATATTTATTACACTCTCTATACCATTTTATGTGACATCACATGACCTGCCACGGAGTTTAAGAAATAAATGAAGACTTTGAATTGTTTATTAAATTGTCGTTCAAAAGTAGACTCACTTTTCTCTCTCTTCATAAATATATTAGAGTACTATTTAAAATTAAGTGGGATCAACAAAAGTAAAAAACACTTTTGAATACTAATCATATAAAAAATGTGATATTCTTTTTGGAACCGATAAAAAAGAAAATGGAACAAAGGGATTATCTATATGTAATAACTAAGAGAGGTAGGGTGGGAGCAACCTTATTTTTTCTAACTCCATTTTTGGGAAACTTAAGATGAATATATTTTTTAATTTTTTTTTCTTACAAATCAGACTTGAAAAAGTTTTCAGGCATCCATTTTATTTCTCTCTTTTCTTAATAATTAATGAAGAAGGATGTGCTCAGATCTTGCGTTTCAATATTATGCAGATGGATCTGGTGGGATCATTTGACTTCTGGAATGGTAAGATATTTATTACTCCTACTAATAATATGTATAAGCTTTTGCAAACATAGTGATTATATCACGGAGTAGTGCTCAAATTATTGAAAATAATATAATTAAGTTACCCTTTTTATTTTGTGACAACAAAAATAATCTCATTTTACAATTGGAAGTAAAGTTCGATTTCTCTTGTTCTATAAGAGGGAGTTTGAACCAGCAACATATCTGCTTGCCATAGGGGTATTTTTAAGTTATTTTGCTTCAAAGTTATATTTAGAGCTGTTCATTATGTATAACTATTTTTAAATAGGCAAATGATATGATACATTTCTCGAATTTGCCATTTAGATTGATATATATATATTCGTCGTAAAAGTTATTTATATATACGCTACAGTTATATAAATGATTTACATACATAATTTTTCTCAAATCAAAATGAAAAAATAACTTTAAATCATTTTTAATTAATTCAACGGCTAACTTGAATTTATTATTTGATTGTCAATTTTCTTTTATTTTTTCACTCATTTTCCTTTAAAGTTATTAAAGATGCCTCATAGCTTTTTATTGATATTAAAGTTATATTACAACATAACCAATAAATGTAGTTCAAAAAAATTTTCTCCGTTTTCATTCACATTCTGTTTTGTTTCTCATGACACTTAAGTATGAATAAGAAATCAAATAATATTTATCAATCAAAAAAATAATTTATACGTGAATTTTTTTTTAATATACAATTTTAAAAAAATTCAAATTAATTTTATAACGATAAAAATATATATGAACAATATTTATAACATTAAAAATATATGTAAATCAATTTATAATAATAAAACTATATATAAAATACTTTTATTATGAATTGGACAAAATAGCAGGATTTAAACCTTTGTACACTTCAAATAAGACCGTGAGCTGAGCTCTATCTCACAGTCTTGTACTATTGCTTTTTTAAAGAACAATTATGACAGTAGCCTCTTTATTAGTATTGTGTGCTAAGATATATAGGTTTGAGCTTTAAAATAATTTACATTTATCTTTAATAATACTACCACTAATTATATGCATTCTTTTTTGTCTAGAATAATCATTTTTTCTATTTTAGGGTTATTCTCTAAAAATGAAAGAGAGCGAAATTAGATTAACAAACAATTTAATTAACATTAAATAAAAATGATCAATATTAATATTTAATACTCTACTATATATCTCAAGTTCATTTTATATTTAATATAATAATAGTTTATTATCATGTAATAATCTATAATTTATTTATAAATATTAAACCCCGATTTCTTCCTTACTTCTTATAAATCGAAAAGGAAAGCACGTTCACTTATAACTAAATGATTGATGCATAATGTTTGACATAAAACAAAACTAGTAATTTTAACCCACATTTTATAATCTATATAGGATTGTTCTAGCCCAACCACTGAGATGTATCTTGCTTTCTATCAAAAAAATAAAATAAATTTTTTGAAGTCTTATTAACTTATGAAACGAAACTAGTGAAATTTACTCAATTAATTAAATACATTTATCATCAATTAATAAATTGAAAGTTTGAGTTATTTTTTTGAAAGATAAATGAATAATATTAATCTTTTTTAGGGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACC</genome_strand>
        <mrna_strand>AAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATCTGGTGGGATCATTTGACTTCTGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTNTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235898" ref_strand="+" ref_description="SGN-E235898 [cLED-16-I14]">
      <seq>aattacccgggggtcatagcgaggagaccaaataatgcgcacacacacgttgtgggaccctacacctacttgaagcatcaatcacataatggggagcaccacccctgtgatctgaatttaatccaaatttgcttgtaaattcgaattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24650" stop="25680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24950" g_stop="25380" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E235898" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24950" e_stop="25380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGC</genome_strand>
        <mrna_strand>AATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238493" ref_strand="+" ref_description="SGN-E238493 [cLED-17-K21]">
      <seq>aattacccgggggtcatagcgaggagaccaaataatgcgcacacacacgttgtgggaccctacacctacttgaagcatcaatcacataatggggagcaccacccctgtgatctgaatttaatccaaatttgcttgtaaattcgaattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattggtgcatttagaggaactgaattcttcaattctgatgattggatttctgactntaatctctcttggtatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24650" stop="25657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24950" g_stop="25357" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E238493" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24950" e_stop="25357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATT</genome_strand>
        <mrna_strand>AATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGGTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTNTAATCTCTCTTGGTATGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233260" ref_strand="+" ref_description="SGN-E233260 [cLED-6-B13]">
      <seq>tgaatttaatccaaatttgcttgtaaattcgaattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttangtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24762" stop="25993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25062" g_stop="25693" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E233260" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25062" e_stop="25693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAAT</genome_strand>
        <mrna_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTANGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377306" ref_strand="+" ref_description="SGN-E377306 [TUS-19-N12]">
      <seq>tgaatttaatccaaatttgcttgtaaattcgaattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaataaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttatgtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattatggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24762" stop="25984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25062" g_stop="25684" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E377306" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25062" e_stop="25684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAA</genome_strand>
        <mrna_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAATAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTATGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTATGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236098" ref_strand="+" ref_description="SGN-E236098 [cLED-16-E1]">
      <seq>tgaatttaatccaaatttgcttgtaaattcttattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24762" stop="25825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25062" g_stop="25525" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E236098" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25062" e_stop="25525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAA</genome_strand>
        <mrna_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCTTATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233551" ref_strand="+" ref_description="SGN-E233551 [cLED-9-O4]">
      <seq>tgaatttaatccaaatttgcttgtaaattcgaattgaacaagaaataattgaacacatcatcaatgatgtgtgggtgtcgttttagtagggaacaaattattccttatcttgaattttccttattttgtttttttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagctgattattgttgcatttagaggaactgaattcttcaattctgatgattggatttctgactttaatctctcttggtatgacattcccggcatgggcaaagtccatgccggatttatgaaagctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactattttctaagaaaattgctcaaacaacttctggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24762" stop="25820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25062" g_stop="25520" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E233551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25062" e_stop="25520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAA</genome_strand>
        <mrna_strand>TGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTTCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235873" ref_strand="+" ref_description="SGN-E235873 [cLED-16-E3]">
      <seq>caagaaataattgaacacatcatcaatgatgtgtgggtgtccctttagtagggaacaaattattccttatcttgaattttccttatttcgttattttattggatttgaacagattatcaagagaaagctacaacacaagcattcgtgcttcaagataaaagcgtggaccctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="24800" stop="25574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25100" g_stop="25274" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E235873" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25100" e_stop="25274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGC</genome_strand>
        <mrna_strand>CAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCCCTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTCGTTATTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693299" ref_strand="+" ref_description="SGN-E693299 [LH_Ea10P09]">
      <seq>ccgattttaatctctcttggtatgacattcccggcatgggcacattccatgccggattcattctagctctcggcttacaaaagagcctcggatggcccaaaaatattgtacaaactgatactgataatattaaccagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttactggtcacagcttaggtggagcacttgcaattttatttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactatagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttactgtttataccaaagatgttaaacgcagcttgggagctgatcagaagctgtattctaccatgtgtacacggacgaaagtatcaggaaggcgggcttcttatatgcatgagagtgataggcttgctattcccaggcatgcctgctcattgtcctcaggattatgttaactctacaaggcttggatcatctgatcattccactgaagacgttgcaaagtatcaaaagattggcatagtaccagcataattataaaagaattaactacccagtgtgtgctttttaaaatttcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="19395" stop="26654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25329" g_stop="25837" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26354" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="844" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E693299" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25329" e_stop="25837"/>
          <exon e_start="26020" e_stop="26354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTAT</genome_strand>
        <mrna_strand>CCGATTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCACATTCCATGCCGGATTCATTCTAGCTCTCGGCTTACAAAAGAGCCTCGGATGGCCCAAAAATATTGTACAAACTGATACTGATAATATTAACCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACTGGTCACAGCTTAGGTGGAGCACTTGCAATTTTATTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTATAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTACTGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTATATGCATGAGAGTGATAGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACAAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAAGAATTAACTACCCAGTGTGTGCTTTTTAAAATTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243726" ref_strand="+" ref_description="SGN-E243726 [cLED-35-E4]">
      <seq>ctctcggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaagtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggcttgtgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25095" stop="26050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25395" g_stop="25750" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E243726" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25395" e_stop="25750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATG</genome_strand>
        <mrna_strand>CTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAAGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTTGTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377847" ref_strand="+" ref_description="SGN-E377847 [TUS-21-L7]">
      <seq>ggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttaatgtttataccaaagatgttaaacgcagcttgggagctgatcagaagctgtattctaccatgtgtacacggacgaaagtatcaggaaggcgggcttcttttatgcatgagagtgattggcttgctattcccaggcatgcctgctcattgtcctcaggattatgttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25100" stop="26529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25400" g_stop="25837" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26229" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="648" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E377847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25400" e_stop="25837"/>
          <exon e_start="26020" e_stop="26229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAAC</genome_strand>
        <mrna_strand>GGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235298" ref_strand="+" ref_description="SGN-E235298 [cLED-11-C4]">
      <seq>ggcttacaaaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttaatgtttataccaaagatgttaaacgcagcttgggagctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25100" stop="26403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25400" g_stop="25837" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26103" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="522" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E235298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25400" e_stop="25837"/>
          <exon e_start="26020" e_stop="26103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATC</genome_strand>
        <mrna_strand>GGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237969" ref_strand="+" ref_description="SGN-E237969 [cLED-18-D21]">
      <seq>ggcttacatatgagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaaaaaccagacaagaatgggtcgtttctgttaatgtttataccaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25100" stop="26378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25400" g_stop="25837" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26078" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="497" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E237969" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25400" e_stop="25837"/>
          <exon e_start="26020" e_stop="26078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGAT</genome_strand>
        <mrna_strand>GGCTTACATATGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAAAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239963" ref_strand="+" ref_description="SGN-E239963 [cLED-29-H9]">
      <seq>aaagagcctgggatggcccaaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25108" stop="25942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25408" g_stop="25642" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E239963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25408" e_stop="25642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTAC</genome_strand>
        <mrna_strand>AAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231502" ref_strand="+" ref_description="SGN-E231502 [cLED-4-O6]">
      <seq>aaaaatattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25127" stop="26139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25427" g_stop="25837" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26032" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="424" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E231502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25427" e_stop="25837"/>
          <exon e_start="26020" e_stop="26032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAG</genome_strand>
        <mrna_strand>AAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238413" ref_strand="+" ref_description="SGN-E238413 [cLED-17-L21]">
      <seq>atattgtacaaactgatactaataatattaatcagccacctccagcctactatttcctaagaaaattgctcaaacaacttctggagaaaaatgaaaaggcaaggtttttagttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagatgaaagttttattgaatatatgaatggacaattaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttaatgtttataccaaagatgttaaacgcagcttgggagctgatcagaagctgtattctaccatgtgtacacggacgaaagtatcaggaaggcgggcttcttttatgcatgagagtgattggcttgctattcccaggcatgcctgctcattgtcctcaggattatgttaactctaccaggcttggatcatctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25131" stop="26553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25431" g_stop="25837" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26253" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="641" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E238413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25431" e_stop="25837"/>
          <exon e_start="26020" e_stop="26253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGAT</genome_strand>
        <mrna_strand>ATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377305" ref_strand="+" ref_description="SGN-E377305 [TUS-19-N12](-)">
      <seq>ttaccggtcacagcttaggtggagcacttgcaattttgtttccagcaatattagcattccatgaggaatcttggctgttgaaaagattagggggcatttacacatttggtcaaccaagagttggagataaaagttttatttgaatatatgaatggacaattaaacaaaacatgaggttccatactacagagttgtgtacagcaatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatctattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttaatgtttataccaaagatgttaaacgcagcttgggagctgatcagaagctgtattctaccatgtgtacacggacgaaagtatcaggaaggcgggcttcttttatgcatgagagtgattggcttgctattcccaggcatgcctgctcattgtcctcaggattatgttaactctaccaggcttggatcatctgatcattccactgaagacgttgcaaagtatcaaaagattggcatagtaccagcataattataaaataattaactacccagtgtgtgctttttagaatttcttatcctacatattagtttttccctgcaccaatgtattattagatatttaattgatttgaagcttgaatcgagtccttggagaacaaagtgaaaaattcattttatccaatggaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25242" stop="26771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25542" g_stop="25837" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26466" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="745" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="757"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E377305" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25542" e_stop="25837"/>
          <exon e_start="26020" e_stop="26466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTA-TTGAATATATGAATGGACAATT-AACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</genome_strand>
        <mrna_strand>TTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATAAAAGTTTTATTTGAATATATGAATGGACAATTAAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377846" ref_strand="+" ref_description="SGN-E377846 [TUS-21-L7](-)">
      <seq>aatgacatggtaccaagattgccatttgacaattctactttcttgttcaagcactttggaacttgcatttattacaatagcctctacagagaaaaaattttagttgaagaaccagacaagaatgggtcgtttctgttaatgtttataccaaagatgttaaacgcagcttgggagctgatcagaagctgtattttaccatgtgtacacggacgaaagtatcaggaaggcgggctttttttatgcatgagagtgattggcttgctattcccaggcatgcctgctcattgtcctcaggattatgttaactctaccaggcttggatcatttgatcattccactgaagacgttgcaaagtatcaaaagattggcatagtaccagcataattataaaataattaactacccagtgtgtgctttttagaattttttatcctacatattagtttttccctgcaccaatgtattattagatatttaattgatttgaagcttgaatcgagtccttggagaacaaagtgaaaaattcattttatccaatggaatatatacttgagttttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="25442" stop="26784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25742" g_stop="25837" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26020" g_stop="26466" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="543" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="583"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E377846" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25742" e_stop="25837"/>
          <exon e_start="26020" e_stop="26466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAAGTAAGAACCTTTTTCTACCTCTTTTTAAACAAATTTAGTCCATGAAAATGTTACTTTATTTGGATGTAAATTTCGACTTGTATCTACATATGCAAAAATAAAATAAAATAAGATCTAACTAATTAGTTCTTAACTTATTAACTCCTTATCCTGAACGAATATATGTTGTTTGAATAATGCAGATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</genome_strand>
        <mrna_strand>AATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATTTATTACAATAGCCTCTACAGAGAAAAA......................................................................................................................................................................................ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTTTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTTTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATTTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTTTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746013" ref_strand="+" ref_description="SGN-E746013 [GI|47105389]">
      <seq>gacggataagagcagtggcttggggtttgaaggagctgagcggcgcgaggaagagcgagcggagcggagtgagagagcgaattagggttttgataatcggaatcaagaaggaagaatcgtcttgtgtgagcgattcgtttatagagagaggtgtggtgagatcgcgagagcgagttgagtgtatatcctacgatttccactctccgctaatcaatttgtcagacaagttttcgttaccatgtcggagaagaagcttgtggttttaggcatcccatgggacgtggatacagaaggtctaagggaatatatgatcaaatatggagatttagaggattgtattgtgatgaaggaacgtgctactggtcgttctcgtggattcggctatgtcacatttgctacagttgaggatgctaagaatgcattgtctaaggagcactttcttggaaacagaatgctagaagtgaaagtggcgacaccgaaggaggagatgagggctcctgcaaagaaagtgaccaggattttcgttgctaggattcctccgtctgtgtctgaagctactttcagaggttattttgagaagtacggtgaaataacagatctgtacatgccaaaggatccatctaccaagggacatcgtggaattgggtttattacttttgcaaatgctgaatcagttgatgatctgatgagtgacacccatgaactgggaggttccacaattgtggtggaccgagcaacacccaaggaagaagatttcagacctgttagtcggatgtctcagagtggaggaggatatggtgcatataatgcatatatgagtgcaactactagatatggtgcgcttggtgctcctaccttatatgatcatcctagttctatgtatggaagaggtggaggtggaggtggaggtggaggtggaggatttccatctcgtggtggcttgggccagaagatctttgttggtcgactacctcaagaggcaacaactgaagatcttcgccagtattttggtagatttggccgtgttttagatgtgtatgtcccaaaggatccaagaagaccagggcatagagggtttggttttgttacatttgctgatgatggtgttgcagatcgtgtttctcgaaggcctcatgagatatgtggacatcaggttgcaattgattctgctactcctcttgatgatgctggtccaagtaacaattacatgatggatcctcctcctcctgctcctgaagcatatgggggatatggtggtcctatgcgtacttatggaaggatgtatgggggcctagattatgatgattggggttacggcctgggtggtgggagaccttcaagatcagatatgagatacaggccctactagctggcctggttggataggaggcggtcaagatcagatatgagattcaggccctagtagctttgtgttgcaggaggtcagaggctgtctgaatttccaatgggtgacaacaatagatatgtcatatttatatcagtttattattaggtggacatcataatacatgtgctactaatacttaagtaattgaaaaagcagtgctgatggattgtgcaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="31093" stop="38873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31393" g_stop="31502" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31503" i_stop="31656" i_length="154">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31657" g_stop="31805" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31888" g_stop="31977" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="349" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33895" g_stop="33960" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="415" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34139" g_stop="34204" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="481" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34473" g_stop="34558" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="567" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34653" g_stop="34698" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="613" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34805" g_stop="34859" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="668" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36086" g_stop="36162" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="745" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36279" g_stop="36420" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="887" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36421" i_stop="36630" i_length="210">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="36631" g_stop="36791" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="1048" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="36896" g_stop="37000" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1049" r_stop="1153" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="37554" g_stop="37706" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1154" r_stop="1306" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="38297" g_stop="38571" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1307" r_stop="1581" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1582" polyA_stop="1600"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E746013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1581</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31393" e_stop="31502"/>
          <exon e_start="31657" e_stop="31805"/>
          <exon e_start="31888" e_stop="31977"/>
          <exon e_start="33895" e_stop="33960"/>
          <exon e_start="34139" e_stop="34204"/>
          <exon e_start="34473" e_stop="34558"/>
          <exon e_start="34653" e_stop="34698"/>
          <exon e_start="34805" e_stop="34859"/>
          <exon e_start="36086" e_stop="36162"/>
          <exon e_start="36279" e_stop="36420"/>
          <exon e_start="36631" e_stop="36791"/>
          <exon e_start="36896" e_stop="37000"/>
          <exon e_start="37554" e_stop="37706"/>
          <exon e_start="38297" e_stop="38571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGATAAGAGCAGTGGCTTGGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAGGTCAGTGGAGCGCGTAAATCTAATTTAGTACTCGTTGTGATTTTAATTTCTTTGGTATCCGAAGATCTTAGAGAAATTGGTGAGTTTGTTCTGAAATATGATGATGATGATGATATTTGTGTGTGAGAAAGAGGTGTGTGTCTGTTACCTGCAGGAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAATGAGATATCAAATCTGGGTTACAGAAGGTCATATATTTATCATTTGGTGCACAGCTTGCAGCTTTTAGTGCATTTAGCTTTCTTGTGAAAAACTTAGGGCTGTTATATCATTTATGGTGTAACAAAAACATAAGGATTTCCATTGCCCCAAACTATGTTATAGTTGTTAGGAGAAGGTTGTTGCTTCGCAGTTCGCTACTTGGAAAATTTAGCAGAACTATCCGCTTAAGAGATGTCACTTTTGGAATTCAACCAAGAACGTGTCCCAAACTGGTTTATTTCTTGTTAACTACATTGGTGGGCACATGAGAACTGGGTCTCAGGAGAAAATCTTGTCGAATAACTAAATGGCAATATTAGGGTTTTTAAAAACAAACGTGATTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGTCTCTCTTCTTCAATTGTCTAGTAGATTCAAGATTGCGTTGGGTTCTTTCCTGGTAAAGTAAACCAGATTATCAAATGCGATTGCCTTTGGCCAGAGATTTTGCGCCTATTACTCGTAAGGCGCAACCCTGCAAAGGCGATCAATGGCGAGAAATGATGAGTGGTGAGGTGGCACCATTGTTGCCCTTTTATTTTATTCTTTTTGAAAAAAAACAAACGTGCTTAATAATTAAATGGCAATATTAGTGTTTTTAAAAACAAACGTGACTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGACTCTCTTCTCCTCAGCTTCAGCCTTTAGTTACGTCTTCTTCTTCTTTCTCCTCTGCTTTGCAGCTTCTCTTCTGCCATAGTCAGCTGCTCTTTTTTTTGCTTCTTCATCTTCTTCTCTTCTTTTTTTTAGTAGGTCAATGTGCCCAGCTTCCTATTACTCTGTTAGTGATTCCTCTGTTCTTATTTTATGGTCTGTTTTTTTTAATTTTCTGCAGATGCAAATCTGCCTTTCTACAGAAAAATTCCAGGTCCTATTTTAATTTTTGTCCAACTCAACTTAGTCATACAAGTTCTTGGGTTCTAGTCTTGTTCGTCAAATTGTCTCATGAATTATTGAGTCATTCAAGTTCTATGGTTAGTTTTTAAATTGAAATATTTGCCAATATGGTATTGCTACTGAGATACTGGTTATTTATATATGCATTAAATATCTTCAGTTTTTTATATTAATTGGCGCCTCAATTCAAAGAGGCCAGCACCTCGCCACGAGGCAAGACATGCCCTTGTCGTCTTTCGACTTAACTTGCATTCCATTCCCAATTTTTGTGATGCTCTTTCCTTTCTAGTCATTCTTTAATAATGACATTTTTCAATATTTAGTAACATTTCAACTTTAAGCTACCAATTTTATCCCTAATGAAATGATTTATATGATTTATAGGCACACAAAAATCTATAGCTTATATTAGACCACAAGTTCCAAAAGTTTTCCTTTGTTTCTTAAATTCCGTGCAAAATCTAATACGTTCACATAAATTGGGACGTAGGGAGTACCAAACATTGCCATGTTTGTGTATTTTGATTCTGGTGTGTTTTGCCAATGATTTTATTGATTGCTTTTGTGACAATTTTAAACATAAAATCAACAGTGTATCAGAAGATTGATCCGTTTTACTAATTTCCCAAAAGTGTGCTGTCTGGTTTATATAGTTAATATATATTTGCATTTTAGTGCTTTGAAAGTAAATGTGCTTTCTGTTGCTAAATTTCTTATCATCTGACTGAAGAAGACTAATGAGTATTGATCTTCATCTAGGAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAGGTGATTTTGGTTTTAATTTGGTTTTCATGTCATTGTTGCAATCATATTTGCATACTACCCTCCAGTTAAACTTTCTTACAATGTATGGTCTTGTTCTTCGTCCTTGGTATAGCTTATTTATGATTTTGTGGTTTTGATGCAAACTTGATTCCTACACTTGTGGATTTGTATGATGCAGAATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAGGTGCAATGCTCTTACTCTTAATGAAAAAACTTCTCTTTGTTACTTTAGTATTTCATCCAATGCTGTACTTTTACTATCTAGGCCAACTATTAATATATTGTGGTGGCTTGAGTTGATTAAAATGGAATGGTTATCATGGTTCATATTGATTTCTTCATTTGGTTGGACATGAAAATTGCATTATAACAAGTGAAAGCCCATTTTATAATCGTTGTGCCTCTAAATACTTTGTAAGGTCTAATACTGATGCTACTAATTTTTTTGGCAGGAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGGGTATTTGTGAAGGATTGCTTTATTAAGATTATTTCTAGCTGGTTGGTTGCTTCATTATTAGAATTTAATATCCTTATTTGATTTTCTTTTGCAGTTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAGGTTCCCCTGTCTCGTTGTGTCATTATTACTTTATATATGTGCTGTCATGTTCTGGCATTAAATCATATGATTCATTATGTACTAATTAATCTTACCCAATCTGCAGGATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTGGTATGTCTCCCATCCTAATTTTTTGCAGTTTTTTCTTTATTTTCCAGGTATTTTCTGGCCACATTCAGTTATTCCTCTGCCTAATATCTAGTTATTGGGAACAGTTTTTTAATAAAACATAGGAACTTATTTTTTGGCAGGAATTGTATCTTGTAGGAACTTCCTGGGTAAATCCTATGTATCCATCTTATATTTCAGGGAGGGAAAACATTGAGTGTTGTAGTTGCAATGTTTTTCTCTGAAGGTGTCTTTAGTGCATTCACTCGGACAAGCGCTCAATTAGTGCAGTTAATTATTAAAATCTGGATCAATCAGTTTACCTTGATTCAGCATAAGTTCTTTTAATTTAATTGTTATAGATATGAAGATCTTCAACCTTTATGCATTAATCCATTACTCCAAGAAATTCACATTCTTGATATTGTAACATTTTTTGTCATTTTGGAATAACAGCTCACTGGTCAGGTGTTTAACCCGTGACCCAACAACGGTTAAAACAATTAGGAGGTTAATAATTTCCCCTTAATTCCACACTCTGTATATTGCCTCTCGGGGTGCTTATTTTGAGCCTGATAATGGGGTGATGATAAATGAATTTGACATTTGAAGAGTTTCTACTGTAGATCAGCATAATATTTGATTTGATCTCAGCCTTGATTCTTTCGCTAGTTATTTTGGTGTCAACTTGTATACCCCCACCCCATCCGAAACTGTTCCACTGGCAGTCTAGTTATACATTCTAGGTATTTTGATTGACATTCATCTTGTTTCTGGAATATAATTAACTAATAAAGTGTGTCTCTCTTAAGTGCACGCAGAGGTCCTGAGATCGAATCTCACCGCCACCCTATCAAAAAGAATTTCCATGTGCTTGGCCATGAAAAAGAATCAGGCCCGCACGTGAGGGGACGTGATGAGAGTAGAATTAACTAGTAAAAGTGCGTTCTCTCTAAAAATATTAAGCTTTTAGATTAGATGGTCACCCACTTCAACACATCTTTTATCACCTTTAGAAGTCTTGTAATTGTGCTGTCTCAGAAGAATCAGTTTCGTTTAATTTTTTCTAGGGATGTGGTAGCTACCACCTTGTTTTTATTTTTTCACCCAGGTAGAGGCAGGGAAGTTCCCTACATGCATGCCTATCATGTCTTCTGCAGACTCTAGTTTCTAGTCAGTTTTGTAATGATTTTCCTTTGAATTGAGTGGCTTTTGGTTTCTTTGCCCAGAATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAGGCAAGTTATGCATAACCGAACTTTGATGTATCTCCAGTGATATATTCTAGATGTCATTGAAGTTCACACGTTCTGTGATGATTCATTAAATTTGCATTTTCTGCTGATGATTCTAGGAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAAGTAAGTAAGCAACAATTCTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGGACTCCTATGCAATAGCTCGCAAACCACAAAAATGAACAGTAAATAATGACAAATATATCTTAAGCATGACACAACATCAATCATGCCTCTTATTTGACACAATTTTTTTACTAAGAGAATTTAATTAAATAAATCAGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAGGTAAAATTCTCTTATTTTCTTTCATTTTGGGGTAACAGATCTCGTCTCAAGTAACTTGGTAAATTGTTTAATTCTGTTATGATTGCGATGCTTATCTCCTGTAGGATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAGGTATTTTTTGGGATTTTAGTAAAAAAAATATTTCCTTATCTTTTGTATCTCCCACCCCAATGAAATCTGTAGACCTTGAAGTATCAGTTGACCAGATTTTGAAATGAGACCATGGATGAGGAAAATCCATGGCCTGACGACTAAATGAGGGGAAATGCTTTCCACTCTAGAGCCACTTGATGGATGATATCTTAAAACTCCCTGGCTATTGCCTAGGATGTTCTGCTTACATTATAAGTTTGTTTGAAAGGTTAACTGTTTTTTGCAAAATTTAAATCTATTGAAACTGACCTGGCCATTTACCTGGATGTACTGCAATTCAGCCAATAGAACATTGTTGTGAAGATGATAAAGTTTCAACTGTTTGCTTGGCAAATGAAAATATACATTAATGTGAAGTTGGGTTTTAGGGAGTTTGAACTTTTACATGCTGAATTTTCACCCTCCTAAATGTAAAGCCAGCTTGGGCTACCCTTTTGGCTTCACTAATATCAGTGACCTTTCATGTTATGCTATGAGTAGTCTTATTCCTAGTTCTACCTTGCTTTTTTAGGTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGATGTAAGTATTTGAACCCTACTTAGCCAGTCAAATAACTTCAGTTGTCTTGTCTTTAACTTTGACCTCCACGATAGAATTGCTTTTATATTGTTAAACATCTATTGCCATGAAAGGCTTCCACCTTGACTGTTTCTTTGGGTGATTTTGAGCTTCCAATCCTCCCCTCTCCCACCAGAAAAATGGTCAATAACTGGACCTTCTTCCTGAGTCTTTCAGCTGTGGTTCTGACTTCTGCCTGGACAATAATTCAATTTGCTCTCTTTACTGACTGACCTATGCAATATGCACAACAATGCTATGTGATGCTTTTTATGTCAATGGAAGAAAACACTCATGTTTACGGCATCTTCCTATCTTTTCAGTGCGGTGATTCAACTAATGGAGTAATTTTTGTATTTTCATATTTACCATCCTCAAAAAGACAACAATTTATCATCATGCTTTATTCATACCTCTTTCCGGTTTTAGTTTTCTCCAAGTTTGTCTCACATGGATATTATGACCAGTCTGTTTATTGTTAGTCCTTAATTTAATAGATGAGAATTCTGGTGATAACCTTTAAATATGTGATTTTCTTCTGGTTCTGACAGTGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCA</genome_strand>
        <mrna_strand>GACGGATAAGAGCAGTGGCTTGGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAG..........................................................................................................................................................GAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTG..................................................................................GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG..................................................................................................................................................................................AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG............................................................................................................................................................................................................................................................................GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG..............................................................................................TTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAG..........................................................................................................GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG....................................................................................................................GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAA..................................................................................................................................................................................................................GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAG........................................................................................................GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318634" ref_strand="+" ref_description="SGN-E318634 [cTOB-9-P19]">
      <seq>ggggtttgaaggagctgagcggcgcgaggaagagcgagcggagcggactgagagagcgaattacggttttgataatcggaatcaagaaggtcagtgcagcgcgtaaatctaatttaatactcgttgtgattttaatttctttggcatccgaagatcttacagaaattggtgagtttgttctgaaatatgatgatgatgatgatatttgtgtgtgagaaagatgtgtgtgtctgttacctgcaggaagaatcgtcttgtgtgatcgattcgttaatagagagaggtgtggtgagatctgccagagcgagttgagtgtgtatcctacgatttccactctccgctaagtaatatgtcagacaggttgtcgttaccatgtcggagaagaagctcgtggttttaggcatcccatgggacgtggatacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="31114" stop="32219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31414" g_stop="31805" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82">
            <donor d_prob="0.960" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31888" g_stop="31919" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="425" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E318634" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31414" e_stop="31805"/>
          <exon e_start="31888" e_stop="31919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAGGTCAGTGGAGCGCGTAAATCTAATTTAGTACTCGTTGTGATTTTAATTTCTTTGGTATCCGAAGATCTTAGAGAAATTGGTGAGTTTGTTCTGAAATATGATGATGATGATGATATTTGTGTGTGAGAAAGAGGTGTGTGTCTGTTACCTGCAGGAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATC-GCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGA</genome_strand>
        <mrna_strand>GGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGACTGAGAGAGCGAATTACGGTTTTGATAATCGGAATCAAGAAGGTCAGTGCAGCGCGTAAATCTAATTTAATACTCGTTGTGATTTTAATTTCTTTGGCATCCGAAGATCTTACAGAAATTGGTGAGTTTGTTCTGAAATATGATGATGATGATGATATTTGTGTGTGAGAAAGATGTGTGTGTCTGTTACCTGCAGGAAGAATCGTCTTGTGTGATCGATTCGTTAATAGAGAGAGGTGTGGTGAGATCTGCCAGAGCGAGTTGAGTGTGTATCCTACGATTTCCACTCTCCGCTAAGTAATATGTCAGACAGGTTGTCGTTACCATGTCGGAGAAGAAGCTCGTG..................................................................................GTTTTAGGCATCCCATGGGACGTGGATACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701534" ref_strand="+" ref_description="SGN-E701534 [FA16BA04]">
      <seq>aggcacactagttttcgttaccatgtcggagaagaagcttgtggttttaggcatcccatgggacgtggatacagaaggtctaagggaatatatgatcaaatatggagatttagaggattgtattgtgatgaaggaacgtgctactggtcgttctcgtggattcggctatgtcacatttgctacagttgaggatgctaagaatgcattgtctaaggagcactttcttggaaacagaatgctagaagtgaaagtggcgacaccgaaggaggagatgagggctcctgcaaagaaagtgaccaggattttcgttgctaggattcctccgtctgtgtctgaagctactttcagaggttattttgagaagtacggtgaaataacagatctgtacatgccaaaggatccatctaccaagggacatcgtggaattgggtttattacttttgcaaatgctgaatcagttgatgatctgatgagtgacacccatgaactgggaggttccacaattgtggtggaccgagcaacacccaaggaagaagatttcagacctgttagtcggatgtctcagagtggaggaggatatggtgcatataatgcatatatgagtgcaactactagatatggtgcgcttggtgctcctaccttatatgatcatcctagttctatgtatggaagaggtggaggtggaggtggaggtggaggtggaggatttccatctcgtggtggcttgggccagaagatctttgttggtcgactacctcaagaggcaacaactgaagatcttcgccagtattttggtagatttggccgtgttttagatgtgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="31464" stop="37085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31763" g_stop="31805" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82">
            <donor d_prob="0.960" d_score="0.91"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31888" g_stop="31977" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="133" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33895" g_stop="33960" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="199" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34139" g_stop="34204" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="265" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34473" g_stop="34558" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="351" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34653" g_stop="34698" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="397" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34805" g_stop="34859" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="452" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="36086" g_stop="36162" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="529" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36279" g_stop="36420" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="671" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36421" i_stop="36630" i_length="210">
            <donor d_prob="0.585" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36631" g_stop="36785" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="826" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E701534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31763" e_stop="31805"/>
          <exon e_start="31888" e_stop="31977"/>
          <exon e_start="33895" e_stop="33960"/>
          <exon e_start="34139" e_stop="34204"/>
          <exon e_start="34473" e_stop="34558"/>
          <exon e_start="34653" e_stop="34698"/>
          <exon e_start="34805" e_stop="34859"/>
          <exon e_start="36086" e_stop="36162"/>
          <exon e_start="36279" e_stop="36420"/>
          <exon e_start="36631" e_stop="36785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTGGTAAGTTTTGGTTTCTTTCTTGATTTTCAAGGCATGTTTGTCTTTGATTGCAATCTTAATGTGATTGCTTCTTGATTTTTAGGTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAGGTCAGTCTACGCAGCTACCTTGACTTTTATGATATGCATTGTTTCAGATATACTGTAGTTCCAAAGACTTTCATGACCTAACTGTGTGCAGTCTTGTTTTTTGTGTTGACAATGTTGTTTCTTTTTTTGTTTGTTAATTGTGCTTGTATCAGAAAATGAGATATCAAATCTGGGTTACAGAAGGTCATATATTTATCATTTGGTGCACAGCTTGCAGCTTTTAGTGCATTTAGCTTTCTTGTGAAAAACTTAGGGCTGTTATATCATTTATGGTGTAACAAAAACATAAGGATTTCCATTGCCCCAAACTATGTTATAGTTGTTAGGAGAAGGTTGTTGCTTCGCAGTTCGCTACTTGGAAAATTTAGCAGAACTATCCGCTTAAGAGATGTCACTTTTGGAATTCAACCAAGAACGTGTCCCAAACTGGTTTATTTCTTGTTAACTACATTGGTGGGCACATGAGAACTGGGTCTCAGGAGAAAATCTTGTCGAATAACTAAATGGCAATATTAGGGTTTTTAAAAACAAACGTGATTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGTCTCTCTTCTTCAATTGTCTAGTAGATTCAAGATTGCGTTGGGTTCTTTCCTGGTAAAGTAAACCAGATTATCAAATGCGATTGCCTTTGGCCAGAGATTTTGCGCCTATTACTCGTAAGGCGCAACCCTGCAAAGGCGATCAATGGCGAGAAATGATGAGTGGTGAGGTGGCACCATTGTTGCCCTTTTATTTTATTCTTTTTGAAAAAAAACAAACGTGCTTAATAATTAAATGGCAATATTAGTGTTTTTAAAAACAAACGTGACTCACGACTCTCTTCTTCAATTTTCTCTTTGACACGTGACTCTCTTCTCCTCAGCTTCAGCCTTTAGTTACGTCTTCTTCTTCTTTCTCCTCTGCTTTGCAGCTTCTCTTCTGCCATAGTCAGCTGCTCTTTTTTTTGCTTCTTCATCTTCTTCTCTTCTTTTTTTTAGTAGGTCAATGTGCCCAGCTTCCTATTACTCTGTTAGTGATTCCTCTGTTCTTATTTTATGGTCTGTTTTTTTTAATTTTCTGCAGATGCAAATCTGCCTTTCTACAGAAAAATTCCAGGTCCTATTTTAATTTTTGTCCAACTCAACTTAGTCATACAAGTTCTTGGGTTCTAGTCTTGTTCGTCAAATTGTCTCATGAATTATTGAGTCATTCAAGTTCTATGGTTAGTTTTTAAATTGAAATATTTGCCAATATGGTATTGCTACTGAGATACTGGTTATTTATATATGCATTAAATATCTTCAGTTTTTTATATTAATTGGCGCCTCAATTCAAAGAGGCCAGCACCTCGCCACGAGGCAAGACATGCCCTTGTCGTCTTTCGACTTAACTTGCATTCCATTCCCAATTTTTGTGATGCTCTTTCCTTTCTAGTCATTCTTTAATAATGACATTTTTCAATATTTAGTAACATTTCAACTTTAAGCTACCAATTTTATCCCTAATGAAATGATTTATATGATTTATAGGCACACAAAAATCTATAGCTTATATTAGACCACAAGTTCCAAAAGTTTTCCTTTGTTTCTTAAATTCCGTGCAAAATCTAATACGTTCACATAAATTGGGACGTAGGGAGTACCAAACATTGCCATGTTTGTGTATTTTGATTCTGGTGTGTTTTGCCAATGATTTTATTGATTGCTTTTGTGACAATTTTAAACATAAAATCAACAGTGTATCAGAAGATTGATCCGTTTTACTAATTTCCCAAAAGTGTGCTGTCTGGTTTATATAGTTAATATATATTTGCATTTTAGTGCTTTGAAAGTAAATGTGCTTTCTGTTGCTAAATTTCTTATCATCTGACTGAAGAAGACTAATGAGTATTGATCTTCATCTAGGAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAGGTGATTTTGGTTTTAATTTGGTTTTCATGTCATTGTTGCAATCATATTTGCATACTACCCTCCAGTTAAACTTTCTTACAATGTATGGTCTTGTTCTTCGTCCTTGGTATAGCTTATTTATGATTTTGTGGTTTTGATGCAAACTTGATTCCTACACTTGTGGATTTGTATGATGCAGAATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAGGTGCAATGCTCTTACTCTTAATGAAAAAACTTCTCTTTGTTACTTTAGTATTTCATCCAATGCTGTACTTTTACTATCTAGGCCAACTATTAATATATTGTGGTGGCTTGAGTTGATTAAAATGGAATGGTTATCATGGTTCATATTGATTTCTTCATTTGGTTGGACATGAAAATTGCATTATAACAAGTGAAAGCCCATTTTATAATCGTTGTGCCTCTAAATACTTTGTAAGGTCTAATACTGATGCTACTAATTTTTTTGGCAGGAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGGGTATTTGTGAAGGATTGCTTTATTAAGATTATTTCTAGCTGGTTGGTTGCTTCATTATTAGAATTTAATATCCTTATTTGATTTTCTTTTGCAGTTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAGGTTCCCCTGTCTCGTTGTGTCATTATTACTTTATATATGTGCTGTCATGTTCTGGCATTAAATCATATGATTCATTATGTACTAATTAATCTTACCCAATCTGCAGGATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTGGTATGTCTCCCATCCTAATTTTTTGCAGTTTTTTCTTTATTTTCCAGGTATTTTCTGGCCACATTCAGTTATTCCTCTGCCTAATATCTAGTTATTGGGAACAGTTTTTTAATAAAACATAGGAACTTATTTTTTGGCAGGAATTGTATCTTGTAGGAACTTCCTGGGTAAATCCTATGTATCCATCTTATATTTCAGGGAGGGAAAACATTGAGTGTTGTAGTTGCAATGTTTTTCTCTGAAGGTGTCTTTAGTGCATTCACTCGGACAAGCGCTCAATTAGTGCAGTTAATTATTAAAATCTGGATCAATCAGTTTACCTTGATTCAGCATAAGTTCTTTTAATTTAATTGTTATAGATATGAAGATCTTCAACCTTTATGCATTAATCCATTACTCCAAGAAATTCACATTCTTGATATTGTAACATTTTTTGTCATTTTGGAATAACAGCTCACTGGTCAGGTGTTTAACCCGTGACCCAACAACGGTTAAAACAATTAGGAGGTTAATAATTTCCCCTTAATTCCACACTCTGTATATTGCCTCTCGGGGTGCTTATTTTGAGCCTGATAATGGGGTGATGATAAATGAATTTGACATTTGAAGAGTTTCTACTGTAGATCAGCATAATATTTGATTTGATCTCAGCCTTGATTCTTTCGCTAGTTATTTTGGTGTCAACTTGTATACCCCCACCCCATCCGAAACTGTTCCACTGGCAGTCTAGTTATACATTCTAGGTATTTTGATTGACATTCATCTTGTTTCTGGAATATAATTAACTAATAAAGTGTGTCTCTCTTAAGTGCACGCAGAGGTCCTGAGATCGAATCTCACCGCCACCCTATCAAAAAGAATTTCCATGTGCTTGGCCATGAAAAAGAATCAGGCCCGCACGTGAGGGGACGTGATGAGAGTAGAATTAACTAGTAAAAGTGCGTTCTCTCTAAAAATATTAAGCTTTTAGATTAGATGGTCACCCACTTCAACACATCTTTTATCACCTTTAGAAGTCTTGTAATTGTGCTGTCTCAGAAGAATCAGTTTCGTTTAATTTTTTCTAGGGATGTGGTAGCTACCACCTTGTTTTTATTTTTTCACCCAGGTAGAGGCAGGGAAGTTCCCTACATGCATGCCTATCATGTCTTCTGCAGACTCTAGTTTCTAGTCAGTTTTGTAATGATTTTCCTTTGAATTGAGTGGCTTTTGGTTTCTTTGCCCAGAATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAGGCAAGTTATGCATAACCGAACTTTGATGTATCTCCAGTGATATATTCTAGATGTCATTGAAGTTCACACGTTCTGTGATGATTCATTAAATTTGCATTTTCTGCTGATGATTCTAGGAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAAGTAAGTAAGCAACAATTCTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGGACTCCTATGCAATAGCTCGCAAACCACAAAAATGAACAGTAAATAATGACAAATATATCTTAAGCATGACACAACATCAATCATGCCTCTTATTTGACACAATTTTTTTACTAAGAGAATTTAATTAAATAAATCAGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTC</genome_strand>
        <mrna_strand>AGGCACACTAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTG..................................................................................GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG..................................................................................................................................................................................AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG............................................................................................................................................................................................................................................................................GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG..............................................................................................TTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAG..........................................................................................................GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG....................................................................................................................GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAA..................................................................................................................................................................................................................GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546170" ref_strand="+" ref_description="SGN-E546170 [TUS-69-G9]">
      <seq>gctgaatcagttgatgatctgatgagtgacacccatgaactgggaggttccacaattgtggtggaccgagcaacacccaaggaagaagatttcagacctgttagtcggatgtctcagggtggaggaggatatggtgcatataatgcatatatgagtgcaactactagatatggtgcgcttggtgctcctaccttatatgatcatcctagttctatgtatggaagaggtggaggtggaggtggaggtggaggtggaggtggaggatttccatctcgtggtggcttgggccagaagatctttgttggtcgactacctcaagaggcaacaactgaagatcttcgccagtattttggtagatttggccgtgttttagatgtatatgtcccaaaggatccaagaagaccagggcatagagggtttggttttgttacatttgctgatgatggtgttgcagatcgtgtttctcgaaggcctcatgagatatgtggacatcaggttgcaattgattctgctactccccttgatgatgctggtcctagtaacaattacatgatggatcctcctcctcctgctcctgaagcatatgggggatatggtggtcctatgcgtacttatggaacgatgtatggcggcctagattatgatgattggggttacggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="35783" stop="38006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36082" g_stop="36162" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36279" g_stop="36427" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="229" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36428" i_stop="36630" i_length="203">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36631" g_stop="36791" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="390" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36896" g_stop="37000" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="495" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37554" g_stop="37706" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="648" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E546170" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36082" e_stop="36162"/>
          <exon e_start="36279" e_stop="36427"/>
          <exon e_start="36631" e_stop="36791"/>
          <exon e_start="36896" e_stop="37000"/>
          <exon e_start="37554" e_stop="37706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAGGCAAGTTATGCATAACCGAACTTTGATGTATCTCCAGTGATATATTCTAGATGTCATTGAAGTTCACACGTTCTGTGATGATTCATTAAATTTGCATTTTCTGCTGATGATTCTAGGAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAAGTAAGTAAGCAACAATTCTTTTTTTTTATGACAAGGGAAACCCGCAGCCGCTACCCTTTGGGTGCGCACAGGGACTCCTATGCAATAGCTCGCAAACCACAAAAATGAACAGTAAATAATGACAAATATATCTTAAGCATGACACAACATCAATCATGCCTCTTATTTGACACAATTTTTTTACTAAGAGAATTTAATTAAATAAATCAGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAGGTAAAATTCTCTTATTTTCTTTCATTTTGGGGTAACAGATCTCGTCTCAAGTAACTTGGTAAATTGTTTAATTCTGTTATGATTGCGATGCTTATCTCCTGTAGGATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAGGTATTTTTTGGGATTTTAGTAAAAAAAATATTTCCTTATCTTTTGTATCTCCCACCCCAATGAAATCTGTAGACCTTGAAGTATCAGTTGACCAGATTTTGAAATGAGACCATGGATGAGGAAAATCCATGGCCTGACGACTAAATGAGGGGAAATGCTTTCCACTCTAGAGCCACTTGATGGATGATATCTTAAAACTCCCTGGCTATTGCCTAGGATGTTCTGCTTACATTATAAGTTTGTTTGAAAGGTTAACTGTTTTTTGCAAAATTTAAATCTATTGAAACTGACCTGGCCATTTACCTGGATGTACTGCAATTCAGCCAATAGAACATTGTTGTGAAGATGATAAAGTTTCAACTGTTTGCTTGGCAAATGAAAATATACATTAATGTGAAGTTGGGTTTTAGGGAGTTTGAACTTTTACATGCTGAATTTTCACCCTCCTAAATGTAAAGCCAGCTTGGGCTACCCTTTTGGCTTCACTAATATCAGTGACCTTTCATGTTATGCTATGAGTAGTCTTATTCCTAGTTCTACCTTGCTTTTTTAGGTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT</genome_strand>
        <mrna_strand>GCTGAATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG....................................................................................................................GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGGGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAAG-AGGTG...........................................................................................................................................................................................................GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTATATGTCCCAAAG........................................................................................................GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTGATTCTGCTACTCCCCTTGATGATGCTGGTCCTAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAACGATGTATGGCGGCCTAGATTATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577897" ref_strand="-" ref_description="SGN-E577897 [LE08BA10]">
      <seq>aggatttccatctcgtggtggcttgggccagaagatctttgttggtcgactacctcaagaggcaacaactgaagatcttcgccagtattttggtagatttggccgtgttttagatgtgtatgtcccaaaggatccaagaagaccagggcatagagggtttggttttgttacatttgctgatgatggtgttgcagatcgtgtttctcgaaggcctcatgagatatgtggacatcaggttgcaattgattctgctactcctcttgatgatgctggtccaagtaacaattacatgatggatcctcctcctcctgctcctgaagcatatgggggatatggtggtcctatgcgtacttatggaaggatgtatgggggcctagattatgatgattggggttacggcctgggtggtgggagaccttcaagatcagatatgagatacaggccctactagctggcctggttggataggaggcggtcaagatcagatatgagattcaggccctagtagctttgtgttgcaggaggtcagaggctgtctgaatttccaatgggtgacaacaatagatatgtcatatttatatcagtttattattaggtggacatcataatacatgtgctactaatacttaagtaattgaaaaagcagtgctgatggattgtgcaattcacttcatacttgatcctttgtattaaatgtattgaagaaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="36362" stop="38922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36662" g_stop="36791" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36896" g_stop="37000" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="235" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37554" g_stop="37706" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="388" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38297" g_stop="38621" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="713" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E577897" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577897" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36662" e_stop="36791"/>
          <exon e_start="36896" e_stop="37000"/>
          <exon e_start="37554" e_stop="37706"/>
          <exon e_start="38297" e_stop="38621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAGGTAAAATTCTCTTATTTTCTTTCATTTTGGGGTAACAGATCTCGTCTCAAGTAACTTGGTAAATTGTTTAATTCTGTTATGATTGCGATGCTTATCTCCTGTAGGATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAGGTATTTTTTGGGATTTTAGTAAAAAAAATATTTCCTTATCTTTTGTATCTCCCACCCCAATGAAATCTGTAGACCTTGAAGTATCAGTTGACCAGATTTTGAAATGAGACCATGGATGAGGAAAATCCATGGCCTGACGACTAAATGAGGGGAAATGCTTTCCACTCTAGAGCCACTTGATGGATGATATCTTAAAACTCCCTGGCTATTGCCTAGGATGTTCTGCTTACATTATAAGTTTGTTTGAAAGGTTAACTGTTTTTTGCAAAATTTAAATCTATTGAAACTGACCTGGCCATTTACCTGGATGTACTGCAATTCAGCCAATAGAACATTGTTGTGAAGATGATAAAGTTTCAACTGTTTGCTTGGCAAATGAAAATATACATTAATGTGAAGTTGGGTTTTAGGGAGTTTGAACTTTTACATGCTGAATTTTCACCCTCCTAAATGTAAAGCCAGCTTGGGCTACCCTTTTGGCTTCACTAATATCAGTGACCTTTCATGTTATGCTATGAGTAGTCTTATTCCTAGTTCTACCTTGCTTTTTTAGGTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGATGTAAGTATTTGAACCCTACTTAGCCAGTCAAATAACTTCAGTTGTCTTGTCTTTAACTTTGACCTCCACGATAGAATTGCTTTTATATTGTTAAACATCTATTGCCATGAAAGGCTTCCACCTTGACTGTTTCTTTGGGTGATTTTGAGCTTCCAATCCTCCCCTCTCCCACCAGAAAAATGGTCAATAACTGGACCTTCTTCCTGAGTCTTTCAGCTGTGGTTCTGACTTCTGCCTGGACAATAATTCAATTTGCTCTCTTTACTGACTGACCTATGCAATATGCACAACAATGCTATGTGATGCTTTTTATGTCAATGGAAGAAAACACTCATGTTTACGGCATCTTCCTATCTTTTCAGTGCGGTGATTCAACTAATGGAGTAATTTTTGTATTTTCATATTTACCATCCTCAAAAAGACAACAATTTATCATCATGCTTTATTCATACCTCTTTCCGGTTTTAGTTTTCTCCAAGTTTGTCTCACATGGATATTATGACCAGTCTGTTTATTGTTAGTCCTTAATTTAATAGATGAGAATTCTGGTGATAACCTTTAAATATGTGATTTTCTTCTGGTTCTGACAGTGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGA</genome_strand>
        <mrna_strand>AGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAG........................................................................................................GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546211" ref_strand="+" ref_description="SGN-E546211 [TUS-69-H9](-)">
      <seq>tcaagaggcaacaactgaagatcttcgccagtattttggtagatttggccgtgttttagatgtatatgtcccaaaggatccaagaagaccagggcatagagggtttggttttgttacatttgctgatgatggtgttgcagatcgtgtttctcgaaggcctcatgagatatgtggacatcaggttgcaattgattctgctactccccttgatgatgctggtcctagtaacaattacatgatggatcctcctcctcctgctcctgaagcatatgggggatatggtggtcctatgcgtacttatggaaggatgtatgggggcctagattatgatgattggggttacggcctgggtggtgggagaccttcaagatcagatatgagatacaggccctactagctggcctggttggataggaggcggtcaagatcagatatgagattcaggccctagtagctttgtgttgcaggaggtcagaggctgtctgaattttcattgggtgacaacaatagatgtgtcatatttatatcagtttattattaggtggacatataatacatgtgctactaatacttccttaatttaattgaaaaagcagtgctgatggattgtgcaattcacttcatacttgatcctttgtattaaatgtattgaagaaacaaaggaatgggtgttaattcctatatccagaaagtagaanacatagttggtagtgaagccaatatagcanaattatgttttatacttaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="36416" stop="39000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36716" g_stop="36791" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36896" g_stop="37000" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="181" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37554" g_stop="37706" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="334" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38297" g_stop="38669" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="715" r_length="381" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="746" polyA_stop="767"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E546211" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36716" e_stop="36791"/>
          <exon e_start="36896" e_stop="37000"/>
          <exon e_start="37554" e_stop="37706"/>
          <exon e_start="38297" e_stop="38669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAGGTAAAATTCTCTTATTTTCTTTCATTTTGGGGTAACAGATCTCGTCTCAAGTAACTTGGTAAATTGTTTAATTCTGTTATGATTGCGATGCTTATCTCCTGTAGGATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAGGTATTTTTTGGGATTTTAGTAAAAAAAATATTTCCTTATCTTTTGTATCTCCCACCCCAATGAAATCTGTAGACCTTGAAGTATCAGTTGACCAGATTTTGAAATGAGACCATGGATGAGGAAAATCCATGGCCTGACGACTAAATGAGGGGAAATGCTTTCCACTCTAGAGCCACTTGATGGATGATATCTTAAAACTCCCTGGCTATTGCCTAGGATGTTCTGCTTACATTATAAGTTTGTTTGAAAGGTTAACTGTTTTTTGCAAAATTTAAATCTATTGAAACTGACCTGGCCATTTACCTGGATGTACTGCAATTCAGCCAATAGAACATTGTTGTGAAGATGATAAAGTTTCAACTGTTTGCTTGGCAAATGAAAATATACATTAATGTGAAGTTGGGTTTTAGGGAGTTTGAACTTTTACATGCTGAATTTTCACCCTCCTAAATGTAAAGCCAGCTTGGGCTACCCTTTTGGCTTCACTAATATCAGTGACCTTTCATGTTATGCTATGAGTAGTCTTATTCCTAGTTCTACCTTGCTTTTTTAGGTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGATGTAAGTATTTGAACCCTACTTAGCCAGTCAAATAACTTCAGTTGTCTTGTCTTTAACTTTGACCTCCACGATAGAATTGCTTTTATATTGTTAAACATCTATTGCCATGAAAGGCTTCCACCTTGACTGTTTCTTTGGGTGATTTTGAGCTTCCAATCCTCCCCTCTCCCACCAGAAAAATGGTCAATAACTGGACCTTCTTCCTGAGTCTTTCAGCTGTGGTTCTGACTTCTGCCTGGACAATAATTCAATTTGCTCTCTTTACTGACTGACCTATGCAATATGCACAACAATGCTATGTGATGCTTTTTATGTCAATGGAAGAAAACACTCATGTTTACGGCATCTTCCTATCTTTTCAGTGCGGTGATTCAACTAATGGAGTAATTTTTGTATTTTCATATTTACCATCCTCAAAAAGACAACAATTTATCATCATGCTTTATTCATACCTCTTTCCGGTTTTAGTTTTCTCCAAGTTTGTCTCACATGGATATTATGACCAGTCTGTTTATTGTTAGTCCTTAATTTAATAGATGAGAATTCTGGTGATAACCTTTAAATATGTGATTTTCTTCTGGTTCTGACAGTGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATA----CTTAA-GTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAA-GAATGGGTGCTAATTCC-ATATCCAG-GAGTAGAA-ACATAGTTGGTAGTGAA</genome_strand>
        <mrna_strand>TCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTATATGTCCCAAAG........................................................................................................GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATTGATTCTGCTACTCCCCTTGATGATGCTGGTCCTAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTTCATTGGGTGACAACAATAGATGTGTCATATTTATATCAGTTTATTATTAGGTGGACAT-ATAATACATGTGCTACTAATACTTCCTTAATTTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGGAATGGGTGTTAATTCCTATATCCAGAAAGTAGAANACATAGTTGGTAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554780" ref_strand="-" ref_description="SGN-E554780 [cTSC-5-G17]">
      <seq>tactcctcttgatgttgttggtccaagtaacaattacatgacggatcatcatcctcctgctcatgaagcatatgggggatatggtggtcctaagcgtactcatggaaggatgtatgggggcctagattatgatgattggggatacggcatgggtggtgggagaccttcaagatcagatatgagatacaggccctactagctggcctggttggataggaggcggtcaagatcagatatgagattcaggccctagtagctttgtgttgcaggaggtcagaggctgtctgaatttccaatgggtgacaacaatagatatgtcatatttatatcagtttattattaggtggacatcataatacatgtgctactaatacttaagtaattgaaaaaagcagtgctgatggattgtgcaattcacttcatacttgatcctttgtattaaatgtattgaagaaacaaagaatgggtgctaattccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="37271" stop="38938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37571" g_stop="37706" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38638" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="479" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E554780" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37571" e_stop="37706"/>
          <exon e_start="38297" e_stop="38638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGATGTAAGTATTTGAACCCTACTTAGCCAGTCAAATAACTTCAGTTGTCTTGTCTTTAACTTTGACCTCCACGATAGAATTGCTTTTATATTGTTAAACATCTATTGCCATGAAAGGCTTCCACCTTGACTGTTTCTTTGGGTGATTTTGAGCTTCCAATCCTCCCCTCTCCCACCAGAAAAATGGTCAATAACTGGACCTTCTTCCTGAGTCTTTCAGCTGTGGTTCTGACTTCTGCCTGGACAATAATTCAATTTGCTCTCTTTACTGACTGACCTATGCAATATGCACAACAATGCTATGTGATGCTTTTTATGTCAATGGAAGAAAACACTCATGTTTACGGCATCTTCCTATCTTTTCAGTGCGGTGATTCAACTAATGGAGTAATTTTTGTATTTTCATATTTACCATCCTCAAAAAGACAACAATTTATCATCATGCTTTATTCATACCTCTTTCCGGTTTTAGTTTTCTCCAAGTTTGTCTCACATGGATATTATGACCAGTCTGTTTATTGTTAGTCCTTAATTTAATAGATGAGAATTCTGGTGATAACCTTTAAATATGTGATTTTCTTCTGGTTCTGACAGTGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTG-AAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGAATGGGTGCTAATTCCAT</genome_strand>
        <mrna_strand>TACTCCTCTTGATGTTGTTGGTCCAAGTAACAATTACATGACGGATCATCATCCTCCTGCTCATGAAGCATATGGGGGATATGGTGGTCCTAAGCGTACTCATGGAAGGATGTATGGGGGCCTAGATTATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGATACGGCATGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGAATGGGTGCTAATTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710577" ref_strand="+" ref_description="SGN-E710577 [FA55DD07]">
      <seq>agcatatgggggatatggtggtcctatgcgtacttatggaaggatgtatgggggcctagattatgatgattggggttacggcctgggtggtgggagaccttcaagatcagatatgagatacaggccctactagctggcctggttggataggaggcggtcaagatcagatatgagattcaggccctagtagctttgtgttgcaggaggtcagaggctgtctgaatttccaatgggtgacaacaatagatatgtcatatttatatcacttaagtattagtagcacatgtattaacatgcgctactaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="37337" stop="38811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37637" g_stop="37706" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38297" g_stop="38535" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="309" r_length="239" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E710577" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37637" e_stop="37706"/>
          <exon e_start="38297" e_stop="38535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGATGTAAGTATTTGAACCCTACTTAGCCAGTCAAATAACTTCAGTTGTCTTGTCTTTAACTTTGACCTCCACGATAGAATTGCTTTTATATTGTTAAACATCTATTGCCATGAAAGGCTTCCACCTTGACTGTTTCTTTGGGTGATTTTGAGCTTCCAATCCTCCCCTCTCCCACCAGAAAAATGGTCAATAACTGGACCTTCTTCCTGAGTCTTTCAGCTGTGGTTCTGACTTCTGCCTGGACAATAATTCAATTTGCTCTCTTTACTGACTGACCTATGCAATATGCACAACAATGCTATGTGATGCTTTTTATGTCAATGGAAGAAAACACTCATGTTTACGGCATCTTCCTATCTTTTCAGTGCGGTGATTCAACTAATGGAGTAATTTTTGTATTTTCATATTTACCATCCTCAAAAAGACAACAATTTATCATCATGCTTTATTCATACCTCTTTCCGGTTTTAGTTTTCTCCAAGTTTGTCTCACATGGATATTATGACCAGTCTGTTTATTGTTAGTCCTTAATTTAATAGATGAGAATTCTGGTGATAACCTTTAAATATGTGATTTTCTTCTGGTTCTGACAGTGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACT</genome_strand>
        <mrna_strand>AGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCACTTAAGTATTAGTAGCACATGTATTAACATGCGCTACTAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242730" ref_strand="-" ref_description="SGN-E242730 [cLED-31-M17]">
      <seq>agtggagcagagcaggcagcattccactaaagtcgagattagagacgtgcaggttgacaaaggagacccaattttagggctatctcggaaaagccgggtgaggaaacccaagaaacaattaccagacataagttcgcctatctcaacgtgggatgttgtagatggaacaaagagtatgacaaagtcgcaaagagaggaagccaggatcgctgcttgggagaacttgcagaaggccaaagcagaagcagaaatccaaaagcttgagatgaaactagaaaagaggaggtcagcatccatggataagattctgaacaagcttagacacgctcaggtgaaggcccaaaatatgagacgtgcaacttcggagagtcagcctagaagggattcccacagaatcattccatttcgggagtatttcaagattacatcatttagcagttgctttgtttgccgtatcccttgattttgtgtacaggcatgaggctttctgaagtaaaattcaagtcaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="40377" stop="38884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40077" g_stop="39895" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39595" g_stop="39514" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="265" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39425" g_stop="39185" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="506" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E242730" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242730" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40077" e_stop="39895"/>
          <exon e_start="39595" e_stop="39514"/>
          <exon e_start="39425" e_stop="39185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAAGTAAGCATGCATTTCCGGCTTGTTTTTGCTTCTTATGTTTGCTAATGCAGCTATCTTGTCCTTCCATACAAATATTCCACATTTTCAAGGGAACTGACATGCCCTTATGTGTAACTCCACAAGTTTGTAGAAACTATTTGGGCCAAGTAGCGAAATACACAACCTTCACCTCACTGCTAGATTCACAAATAAAAGATTGATGGACATTCTTTTGGCAATACATATGTATACTTATAGTAGGTGCATTTGTCAAGGAGCAAAAATACTATATATGAATAACGGTTGTGCATTTTGTGAAGGTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAGGTTCGTTAGACATATATCCAGACACTGATACTTGTTTGAAAGAATAGGACGAGCATAAAAGAAGACTTAACTATTATTTGCATTTCAGATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</genome_strand>
        <mrna_strand>AGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA...........................................................................................................................................................................................................................................................................................................GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG........................................................................................ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231450" ref_strand="-" ref_description="SGN-E231450 [cLED-4-O15]">
      <seq>cagacataagttcgcctatctcaacgtgggatgttgtagatggaacaaagagtatgacaaagtcgcaaagagaggaagccaggatcgctgcttgggagaacttgcagaaggccaaagcagaagcagaaatccaaaagcttgagatgaaactagaaaagaggaggtcagcatccatggataagattctgaacaagcttagacacgctcaggtgaaggcccaaaatatgagacgtgcaacttcggagagtcagcctagaagggattcccacagaatcattccatttcgggagtatttcaagattacatcatttagcagttgctttgtttgccgtatcccttgattttgtgtacaggcatgaggctttctgaagtaaaattcaagtcaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="40255" stop="38884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39955" g_stop="39895" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39595" g_stop="39514" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="143" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39425" g_stop="39185" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="384" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="403"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E231450" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231450" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39955" e_stop="39895"/>
          <exon e_start="39595" e_stop="39514"/>
          <exon e_start="39425" e_stop="39185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAAGTAAGCATGCATTTCCGGCTTGTTTTTGCTTCTTATGTTTGCTAATGCAGCTATCTTGTCCTTCCATACAAATATTCCACATTTTCAAGGGAACTGACATGCCCTTATGTGTAACTCCACAAGTTTGTAGAAACTATTTGGGCCAAGTAGCGAAATACACAACCTTCACCTCACTGCTAGATTCACAAATAAAAGATTGATGGACATTCTTTTGGCAATACATATGTATACTTATAGTAGGTGCATTTGTCAAGGAGCAAAAATACTATATATGAATAACGGTTGTGCATTTTGTGAAGGTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAGGTTCGTTAGACATATATCCAGACACTGATACTTGTTTGAAAGAATAGGACGAGCATAAAAGAAGACTTAACTATTATTTGCATTTCAGATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</genome_strand>
        <mrna_strand>CAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA...........................................................................................................................................................................................................................................................................................................GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG........................................................................................ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240600" ref_strand="-" ref_description="SGN-E240600 [cLED-21-H1]">
      <seq>gttcgcctatctcaacgtgggatgttgtagatggaacaaagagtatgacaaagtcgcaaagagaggaagccaggatcgctgcttgggagaacttgcaaaaggccaaagcaaaagcagaaatccaaaagcttgagatgaaactagaaaagaggaggtcagcatccatggataagattctgaacaagcttagacacgctcaggtgaaggcccaaaatatgagacgtgcaacttcggagagtcagcctagaagggattcccacagaatcattccatttcgggagtatttcaagattacatcatttagcagttgctttgtttgccgtatcccttgattttgtgtacaggcatgaggctttctgaaannaaattcaagtcaaaaaaaaaaaaaaaaaactcgagaatagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="40246" stop="38899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39946" g_stop="39895" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39595" g_stop="39514" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="134" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88">
            <donor d_prob="0.844" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39425" g_stop="39185" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="375" r_length="241" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="394"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E240600" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39946" e_stop="39895"/>
          <exon e_start="39595" e_stop="39514"/>
          <exon e_start="39425" e_stop="39185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAAGTAAGCATGCATTTCCGGCTTGTTTTTGCTTCTTATGTTTGCTAATGCAGCTATCTTGTCCTTCCATACAAATATTCCACATTTTCAAGGGAACTGACATGCCCTTATGTGTAACTCCACAAGTTTGTAGAAACTATTTGGGCCAAGTAGCGAAATACACAACCTTCACCTCACTGCTAGATTCACAAATAAAAGATTGATGGACATTCTTTTGGCAATACATATGTATACTTATAGTAGGTGCATTTGTCAAGGAGCAAAAATACTATATATGAATAACGGTTGTGCATTTTGTGAAGGTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAGGTTCGTTAGACATATATCCAGACACTGATACTTGTTTGAAAGAATAGGACGAGCATAAAAGAAGACTTAACTATTATTTGCATTTCAGATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</genome_strand>
        <mrna_strand>GTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA...........................................................................................................................................................................................................................................................................................................GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAAAAGGCCAAAGCAAAAGCAGAAATCCAAAAGCTTGAG........................................................................................ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAANNAAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556541" ref_strand="+" ref_description="SGN-E556541 [cTSD-3-M8]">
      <seq>ctccaacgcacaaacctacaggggccccaagtctaaaagtggacctcttgggccacctggcctaatgtatttaccgaactattcgccctctatgccagtccttgaaagtggaggtataagtaacttcattgcaaattcaccatttacaactggtgtactggtgcctgatggggtatccattcattatggtgctggtgaatatgctcagaatagtatggctcgagcaaccagtgctcccggtctgtcagatttgttcagtgaatcttcagtaccaagctctccagatgatgtcacaaaggagccagattctatttcctttgcagttttgaggagagacatggcaacacaaatgagctctgatgacagtacacatacatctccccaggaaaggtcatcttcaatccctcctggagtggagcagagcaggcagcattccactaaagtcgagattagagacgtgcaggttgacaaaggagacccaattttagggctatctcggaaaagccgggtgaggaaacctaagaaacaattaccagacataagttcgcctatctcaacgtgggatgttgtagatggaacaaagagtatgacaaagtcgcaaagagaggaagccaggatcgctgcttgggagaacttgcagaaggccaaagcagaagcagaaatccaaaagcttgagatgaaactagaaaagaggaggtcagcatccatggataagattctgaacaagcttagacacgctcaggtgaaggcccaaaatatgagacgtgcaacttcggagagtcagcctagaagggattcccacagaatcattccatttcgggagtatttcaagattacatcatttagcagttgctttgtttgccgtatcccttgattttgtgtacaggcatgaggctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="41491" stop="38903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41191" g_stop="40907" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40906" i_stop="40205" i_length="702">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40204" g_stop="39895" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="594" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39595" g_stop="39514" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="676" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39425" g_stop="39203" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="899" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E556541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41191" e_stop="40907"/>
          <exon e_start="40204" e_stop="39895"/>
          <exon e_start="39595" e_stop="39514"/>
          <exon e_start="39425" e_stop="39203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTCAGAATAGTATGGCTCGAGCAACCAGTGCTCCCGGTCTGTCAGATTTGTTCAGTGAATCTTCAGTACCAAGCTCTCCAGGTATGCATTTCTTCCGTTGCCTGCTTTGTACTGGTTGTCATAGCGCGAGAGAAGCACTAACCTAATTCTGGTGAATCTTAATTTGTTGTCACTTCAGTTCTTGCAAAAGAAGGTCTCAACGGTCCTACTGTCTCTATATCAGGTTTAAATGTATTATTTAAGTCAACTTAGCTATAGAGTCTTAAGACACTTGAAATGTGGAAGTTGTAGCCTGCAGATTAAGAATTGGGATCGGGAATAACTAATAGCTAAGACACGGATCTTGAATTTGATGAGAAACCCAGCTAAAACAGAAGTTTAATCGAAGTTCAGTGACTGTCCTCCTAAGTTTTAGCAATTGATGATGGCAATATCTCATGTAACACAAGATCCAAGTGTTGAGGACTTCCTATCATATGAATCTACACTTATGTGCTACATGACGGATGAAAAAGCAGTATGCAATTGTATAAACTGATTTAGATGAATAATCATCTTGTTATGCTAGGATTGCAAGTAGTGTTGGTTCATCTTAAAAAATATGACTTTGATGCTTCTTAACTACACTCAGGCCATTTGTTTGAAGTTTGTTAAGCATCAAGTTTACCAGCAAAAGGCCATTGTTCAGTTATGAAACGATTTTTGAGAGAGAAAGATATGTCTTTAGTAAAGTACACCACTATAATTTAATGATATTCTGTTGTTGATGAATCCAATGAACAGATGATGTCACAAAGGAGCCAGATTCTATTTCCTTTGCAGTTTTGAGGAGAGACATGGCAACACAAATGAGCTCTGATGACAGTACACATACATCTCCCCAGGAAAGGTCATCTTCAATCCCTCCTGGAGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAAGTAAGCATGCATTTCCGGCTTGTTTTTGCTTCTTATGTTTGCTAATGCAGCTATCTTGTCCTTCCATACAAATATTCCACATTTTCAAGGGAACTGACATGCCCTTATGTGTAACTCCACAAGTTTGTAGAAACTATTTGGGCCAAGTAGCGAAATACACAACCTTCACCTCACTGCTAGATTCACAAATAAAAGATTGATGGACATTCTTTTGGCAATACATATGTATACTTATAGTAGGTGCATTTGTCAAGGAGCAAAAATACTATATATGAATAACGGTTGTGCATTTTGTGAAGGTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAGGTTCGTTAGACATATATCCAGACACTGATACTTGTTTGAAAGAATAGGACGAGCATAAAAGAAGACTTAACTATTATTTGCATTTCAGATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTC</genome_strand>
        <mrna_strand>CTCCA-ACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTCAGAATAGTATGGCTCGAGCAACCAGTGCTCCCGGTCTGTCAGATTTGTTCAGTGAATCTTCAGTACCAAGCTCTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAAAGGAGCCAGATTCTATTTCCTTTGCAGTTTTGAGGAGAGACATGGCAACACAAATGAGCTCTGATGACAGTACACATACATCTCCCCAGGAAAGGTCATCTTCAATCCCTCCTGGAGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCTAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA...........................................................................................................................................................................................................................................................................................................GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG........................................................................................ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377252" ref_strand="-" ref_description="SGN-E377252 [TUS-19-B16](-)">
      <seq>atgctgaaaggtggattactagcccagtgtttagttatggtgtttggaggactccaaacgcacaaacctacaggggccccaagtctaaaagtggacctcttgggccacctggcctaatgtatttaccgaactattcgccctctatgccagtccttgaaagtggaggtataagtaacttcattgcaaattcaccatttacaactggtgtactggtgcctgatggggtatccattcattatggtgctggtgaatatgctcagaatagtatggctcgagcaaccagtgctcccggtctgtcagatttgttcagtgaatcttcagtaccaagctctccagatgatgtcacaaaggagccagattctatttcctttgcagttttgaggagagacatggcaacacaaatgagctctgatgacagtacacatacatctccccaggaaaggtcatcttcaatccctcctggagtggagcagagcaggcagcattccactaaagtcgagattagagacgtgcaggttgacaaaggagacccaattttagggctatcttggaaaagccgggtgaggaaacccaagaaacaattaccagacataagttcgcctatctcaacgtgggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="41542" stop="39621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41242" g_stop="40907" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40906" i_stop="40205" i_length="702">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40204" g_stop="39921" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="620" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E377252" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377252" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41242" e_stop="40907"/>
          <exon e_start="40204" e_stop="39921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAAGGTGGATTACTAGCCCAGTGTCAAGTTATGGTGTTTGGAGGACTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTCAGAATAGTATGGCTCGAGCAACCAGTGCTCCCGGTCTGTCAGATTTGTTCAGTGAATCTTCAGTACCAAGCTCTCCAGGTATGCATTTCTTCCGTTGCCTGCTTTGTACTGGTTGTCATAGCGCGAGAGAAGCACTAACCTAATTCTGGTGAATCTTAATTTGTTGTCACTTCAGTTCTTGCAAAAGAAGGTCTCAACGGTCCTACTGTCTCTATATCAGGTTTAAATGTATTATTTAAGTCAACTTAGCTATAGAGTCTTAAGACACTTGAAATGTGGAAGTTGTAGCCTGCAGATTAAGAATTGGGATCGGGAATAACTAATAGCTAAGACACGGATCTTGAATTTGATGAGAAACCCAGCTAAAACAGAAGTTTAATCGAAGTTCAGTGACTGTCCTCCTAAGTTTTAGCAATTGATGATGGCAATATCTCATGTAACACAAGATCCAAGTGTTGAGGACTTCCTATCATATGAATCTACACTTATGTGCTACATGACGGATGAAAAAGCAGTATGCAATTGTATAAACTGATTTAGATGAATAATCATCTTGTTATGCTAGGATTGCAAGTAGTGTTGGTTCATCTTAAAAAATATGACTTTGATGCTTCTTAACTACACTCAGGCCATTTGTTTGAAGTTTGTTAAGCATCAAGTTTACCAGCAAAAGGCCATTGTTCAGTTATGAAACGATTTTTGAGAGAGAAAGATATGTCTTTAGTAAAGTACACCACTATAATTTAATGATATTCTGTTGTTGATGAATCCAATGAACAGATGATGTCACAAAGGAGCCAGATTCTATTTCCTTTGCAGTTTTGAGGAGAGACATGGCAACACAAATGAGCTCTGATGACAGTACACATACATCTCCCCAGGAAAGGTCATCTTCAATCCCTCCTGGAGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTT</genome_strand>
        <mrna_strand>ATGCTGAAAGGTGGATTACTAGCCCAGTGTTTAGTTATGGTGTTTGGAGGACTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTCAGAATAGTATGGCTCGAGCAACCAGTGCTCCCGGTCTGTCAGATTTGTTCAGTGAATCTTCAGTACCAAGCTCTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGTCACAAAGGAGCCAGATTCTATTTCCTTTGCAGTTTTGAGGAGAGACATGGCAACACAAATGAGCTCTGATGACAGTACACATACATCTCCCCAGGAAAGGTCATCTTCAATCCCTCCTGGAGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTTGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337813" ref_strand="+" ref_description="SGN-E337813 [cTOE-17-H10]">
      <seq>agcaccacaactcaaagttggtaaaagcctgaactcttctgcattagcagtagttaaagggttattgttccaagatttatgtggcatgcaatttgccattattgagaatcatgaagcagaattctacttccttgaggaattcgggtttatatacaagcccagcaacaccagaatatggagataataatgttagaggatttcagaagggatggagttctgaacgagtcccgttgccgactaacagcggcaggaggcatattagtactactgcattgatgcctttcaatagtggaaggacagtgccttcaaaatgggatgatgctgaaaggtggattactagcccagtgtcaagttatggtgtttggaggactccaaacgcacaaacctacaggggccccaagtctaaaagtggacctcttgggccacctggcctaatgtatttaccgaactattcgccctctatgccagtccttgaaagtggaggtataagtaacttcattgcaaattcaccatttacaactggtgtactggtgcctgatggggtatccattcattatggtgctggtgaatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="-" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="42535" stop="40685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42235" g_stop="42177" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42176" i_stop="41502" i_length="675">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41501" g_stop="40985" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="576" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="-" ref_id="SGN-E337813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42235" e_stop="42177"/>
          <exon e_start="41501" e_stop="40985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCACAACTCAAAGTTGGTAAAAGCCTGAACTCTTCTGCATTAGCAGTAGTTAAAGGTAAAAGCTTCACTTAATCAACATTTATTTGCTGTAAAAGTTTGAAACTTGTTGTGCTTTTTTGCTTCTCCCCCCACTTTTCTCATCCTTTTTCAGGGGTCCTGAATGCAACATGCACTTTTTTACTTTTTAACTTTGTATAATTGAGGTATATAACTGGTAATAGGAATAACCAACTTTCTTGCTGATTGCTTCTTTCTACTTCTTCCTCTGCCCTTCTGGGGACGGAAGATACTGTTGATTAAATTTAGGGGGCTTCAAATCTTCTTGTGTTTATTAGATTTAGGGAAAAATGGGAGGGGATAACAACTTGAGAATCGAACGCTAGCCAACAAGATAGAAGTTTAGATAGTCAACTAATTGAACGAGCTACTGAATAAAAATTTGTTCAGGTGTCAACTTTCTTTTGAATCTACTAGTAATAAATTTATTCCACTACTGGCAATATTTGGCCATTTTAACTTTTCCAGTGGTCCTGACTTTGTGATGACTGTAACCTCTAAATTACTTAATTGCCACAAATTTCAAGATTTTTGAGAGTAATTCTGTGTTGCTCAAGACAAAATGAGGACATACCTGGATAGCATTTTTTTAATTTTGGATGTATAGTGGTGGTGTGATAGTAAAAAGCCTAGTTTAGATTTATGGTCTTTAATGTTCTAACCAATTGGATAGGGTTATTGTTCCAAGATTTATGTGGCATGCAATTTGCCATTATTGAGAATCATGAAGCAGAATTCTACTTCCTTGAGGAATTCGGGTTTATATACAAGCCCAGCAACACCAGAATATGGAGATAATAATGTTAGAGGATTTCAGAAGGGATGGAGTTCTGAACGAGTCCCGTTGCCGACTAACAGCGGCAGGAGGCATATTAGTACTACTGCATTGATGCCTTTCAATAGTGGAAGGACAGTGCCTTCAAAATGGGATGATGCTGAAAGGTGGATTACTAGCCCAGTGTCAAGTTATGGTGTTTGGAGGACTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTC</genome_strand>
        <mrna_strand>AGCACCACAACTCAAAGTTGGTAAAAGCCTGAACTCTTCTGCATTAGCAGTAGTTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATTGTTCCAAGATTTATGTGGCATGCAATTTGCCATTATTGAGAATCATGAAGCAGAATTCTACTTCCTTGAGGAATTCGGGTTTATATACAAGCCCAGCAACACCAGAATATGGAGATAATAATGTTAGAGGATTTCAGAAGGGATGGAGTTCTGAACGAGTCCCGTTGCCGACTAACAGCGGCAGGAGGCATATTAGTACTACTGCATTGATGCCTTTCAATAGTGGAAGGACAGTGCCTTCAAAATGGGATGATGCTGAAAGGTGGATTACTAGCCCAGTGTCAAGTTATGGTGTTTGGAGGACTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E744886" ref_strand="+" ref_description="SGN-E744886 [GI|1772984]">
      <seq>cttttcttgaactggggttcaattaaaagatgtattcaactgttttttacacttcagtgcatccttccacttcagttttatcaagaaagcagctacctttattgatttccaaggacttttctgcagagttatatcattctttaccttgtaggagcttggaaaatgggcatatcaacaaggttaaaggagtaaaagtaaaagcaacaattgctgaagctccagttactcctacagagaagactgactctggggctaacggtgatttgaaggttccacagaagaagttgaaagtacttgttgcgggtggtgggattggtgggttagtgtttgctttggcagcaaagaaaagggggtttgatgtattggtgtttgagagggatttaagtgctatcagaggagagggacaatatagaggtccaatacagatacagagcaatgcattggctgctttagaagcaattgatttggatgttgctgaagacattatgaatgctggctgcatcactggtcaaaggattaatggcttggttgatggtatttctggcaactggtattgcaagtttgatacgttcactccagcagtggaacgtggacttccagtgacaagagttatcagtcgcatgactttgcagcagatccttgcacgtgctgttggtgaggagataattatgaatgaaagtaatgttgtagactttgaggatgatggagagaaggttactgtggttcttgagaatggacaacgatttacaggtgatcttctggttggtgctgatggcataagatctaaggtacggactaatttattcggacccagtgaagctacttactctggctacacttgttatactggaattgcagatttcgttccagctgatattgatacagttgggtaccgcgtctttttgggccacaaacagtactttgtttcttcagatgtggggggaggcaagatgcagtggtatgcattttacaatgaaccagctggtggtgcggatgccccaaacggtaaaaaggaaagattgcttaaaatatttgggggatggtgtgacaatgttatagacctattagttgccacagatgaagatgcaattcttcgtcgtgacatctatgatagaccgccaacctttagttggggaagaggtcgtgttacattgcttggggactccgtccatgccatgcagcctaatttgggtcaagggggatgcatggccatagaggatagctatcaactagcactggaacttgaaaaagcatgcagtcgaagtgcagagtttggaagccctgtggatatcatctcatctttaaggagctatgaaagtgctagaaaacttcgagttggagtcatccatggactggctagaatggctgcaatcatggcatctacttacaaggcttatcttggcgtcggacttggtccactatcatttttgacgcagtatagaataccacatcctggaagagttggtggaagagtttttattgacttgggaatgcctctgatgttaagttgggttttaggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgcggggaatggctcttctggtttagaagctattgttttaagcagagatgaggatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaaggaaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggaaattgtacagcattttatagcaaacatcaggcgttgagcaatttaagcatagttaattttgtatactgtaggttttagaaaagatccataaacaagacaccatgaaagaaaatacagagattctcctaaagaaatctggagaatgtcatggacattgtctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="49617" stop="55515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49917" g_stop="50466" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50467" i_stop="50904" i_length="438">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50905" g_stop="51067" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="713" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51068" i_stop="51220" i_length="153">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51221" g_stop="51295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="788" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51296" i_stop="51464" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51465" g_stop="51565" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="889" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51566" i_stop="51680" i_length="115">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51681" g_stop="51796" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="890" r_stop="1005" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51797" i_stop="52383" i_length="587">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52384" g_stop="52595" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1217" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52749" g_stop="52840" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1309" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53058" g_stop="53172" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1424" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53274" g_stop="53377" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1425" r_stop="1528" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359">
            <donor d_prob="0.085" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1529" r_stop="1574" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1575" r_stop="1639" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="54057" g_stop="54143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1640" r_stop="1726" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1727" r_stop="1781" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="54604" g_stop="54692" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1782" r_stop="1870" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="54784" g_stop="54868" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1871" r_stop="1955" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="54946" g_stop="55215" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1956" r_stop="2225" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E744886" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49917" e_stop="50466"/>
          <exon e_start="50905" e_stop="51067"/>
          <exon e_start="51221" e_stop="51295"/>
          <exon e_start="51465" e_stop="51565"/>
          <exon e_start="51681" e_stop="51796"/>
          <exon e_start="52384" e_stop="52595"/>
          <exon e_start="52749" e_stop="52840"/>
          <exon e_start="53058" e_stop="53172"/>
          <exon e_start="53274" e_stop="53377"/>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54692"/>
          <exon e_start="54784" e_stop="54868"/>
          <exon e_start="54946" e_stop="55215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTGAACTGGGGTTCAATTAAAAGATGTATTCAACTGTTTTTTACACTTCAGTGCATCCTTCCACTTCAGTTTTATCAAGAAAGCAGCTACCTTTATTGATTTCCAAGGACTTTTCTGCAGAGTTATATCATTCTTTACCTTGTAGGAGCTTGGAAAATGGGCATATCAACAAGGTTAAAGGAGTAAAAGTAAAAGCAACAATTGCTGAAGCTCCAGTTACTCCTACAGAGAAGACTGACTCTGGGGCTAACGGTGATTTGAAGGTTCCACAGAAGAAGTTGAAAGTACTTGTTGCGGGTGGTGGGATTGGTGGGTTAGTGTTTGCTTTGGCAGCAAAGAAAAGGGGGTTTGATGTATTGGTGTTTGAGAGGGATTTAAGTGCTATCAGAGGAGAGGGACAATATAGAGGTCCAATACAGATACAGAGCAATGCATTGGCTGCTTTAGAAGCAATTGATTTGGATGTTGCTGAAGACATTATGAATGCTGGCTGCATCACTGGTCAAAGGATTAATGGCTTGGTTGATGGTATTTCTGGCAACTGGTAAATTCACATCACTATGATTTCTTTGTGCTAATTAGGTGCTTGTTTATGCTTTACTCTGATATGTTTTACTTGAGTCGACATCAAAAGTTAGGGATACCACCCTCCTCAGAACCCACTCGTGTGCTTGTCCGAAGAGAAACTCTTGGTGTTATTTAACAGTAACAATCATACACAAGCTTTTACTAAGGATAACTGAAGAAGATAATGAAATACTTAAGTCTTTCAGAAAATTATACTGAAATTATTTGAGGGAAAATAATTCATTTAGTGAAAAGTTTATTGAGTCATAGTTGTTGAGCTTATTCCGGAAAAGGATCCATATTTACCTGCAATCAGATTGGTGAATTGGTCTCGTTATTGTATGAACAGCTTTATTATGAGAACAGTTCCTTTTTAGTTCTTGAACTGCACACAGTGACAATAGTTGGTTTTCAGGTATTGCAAGTTTGATACGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACAAGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAGGTATCTGGCTATTTCCAAAACTCAAAATATCAAGAAAGATTAGAACTTCTGTTAGTTTCATTTAAGATTGTGTCGATCAGTGTCAATGGTAGCTAATTGTTGTGTCTTATTAATCAATTTTCATTATAGCTTCTCATGTTTGTGTGAAATCAGGTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAGGTATTCAAAATCAGTCTCATTCTATTTCCTTCTAATATTGCTACTTGTGTTGATTACAAGGATAGAGTAACTTGTCCATATGTTACTTTGAGATTGTGGTCCATGTTAAAAAAGTAGTTGGTCAATTCGGCTTGGTTTAGAAGATCTCAAACATTGGTGTTTATTGTAGGTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGGGTATGATATTCTTACTTATCGGATTGTCTTTTCCCTCTTCATGTCCTTAGCTGGTCCCCTTATGCTCATGCTATGTTGTCATAGTAAAGGTTAAATTCAGATTTCTTTTCTGAAGGTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACGGTAAGAGTTTTTAGGCCGTTTGTAGTTCAGGATATAAACGTGCTTACTAGAAGACGTTTCTGAATGCTTGACTTGTTAAGTAATGTCTATATAACCCAAGGGGTTTCTCGAGGATTTTTCCTTGTTGAGACCTGATTATAGTGCTGCAATAAGGTAAAGAAGAAGTCAAGATTAGAATGAGATAGATTCAATGAATTGTGAGTTGGAAAGTTTTGAATTGAAGTGCTGATTCATGCATAATCTAACTTTTGGTAAGCAGTTGCACTCTTACTCATCTAATTCATTTCTGAAGAGTTTCAGAGAATGATGCACCACAATTCTTTGTTTCTACTCATAGATGTGAGGTCCTTACTTCATCACAGAAATTGTTTATTAACTTGTATATGAAACGCATGTCTTATTATATTGTTGTAGTAGTACCAGTTTGGATAAAAGAATCACAAACTTTTGGGGGGTTGGCACTACATGAGATGAGTATGGTATCTTGACACTCTAAATTGCCACTATGATGCTCAAGAGGTTAGGAAATATATGTAGTCATATTGTCATTACATTGGTTGTCAATAGTTTATCTGTTCATGCTGCAGGTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAGGTACATTCTTTATAGTAACCTTTTTTACTTCACTTAATTAACATGGTATTATTGGTCGATTCTATCCCTTAGTCCCTTCTATCTAAGAACTAAGAAGTAGGGTATTATTGTTATGTTGTGTAAGCCACTGAACGTTTCCTTTTACAACTACAGGATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAGGTAATCCATTATTTATTGGCTCAAGTGATGTATAGTGGTTGCTTGAATACACGCTGTTTGACAATTGAAAAGTCATTTAAAATTGGCTGAAGTCTTAACTTCACCTTACCACCAGCCAAGAAAGCCTGCTTTAAATGCCTAAATGAAGATGAATTGACTTGAACAACTTCTGTTTCTGCCAGTTAGCTGATCCTTTTATGATTTTCTGTATCCACAGCTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGGGTAGGGAATATGCAGGCCTTTTCTTGGTTCAATATTTTAAACATGAACTTGATTTTACTTATGTGATCAGCCTATAGCTAGAGAGTGAAATTGCAAAGCCATATATTTATTTTTACTTCTAATGCTTCTTGCGGTGAACCCTTCCTTTTATCACAGTTCAATGGTTCATGATTATTCTGTTGATTCTGTTTAGTCGGAACTTTTACTCGAAATTCTTTTATTGTACCTAAGCTTCAAATTATTAGTTCTTTTTTGTTCGGAAAAATTAGAAGTTGAGCTTTCCCTCATCCTTGATGAGTTCAATGGATTCTTGGAAGTTGATAAACTAGTAGTTTGACTCGGCTTTTTTTTTCTTGCAGGGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTT</genome_strand>
        <mrna_strand>CTTTTCTTGAACTGGGGTTCAATTAAAAGATGTATTCAACTGTTTTTTACACTTCAGTGCATCCTTCCACTTCAGTTTTATCAAGAAAGCAGCTACCTTTATTGATTTCCAAGGACTTTTCTGCAGAGTTATATCATTCTTTACCTTGTAGGAGCTTGGAAAATGGGCATATCAACAAGGTTAAAGGAGTAAAAGTAAAAGCAACAATTGCTGAAGCTCCAGTTACTCCTACAGAGAAGACTGACTCTGGGGCTAACGGTGATTTGAAGGTTCCACAGAAGAAGTTGAAAGTACTTGTTGCGGGTGGTGGGATTGGTGGGTTAGTGTTTGCTTTGGCAGCAAAGAAAAGGGGGTTTGATGTATTGGTGTTTGAGAGGGATTTAAGTGCTATCAGAGGAGAGGGACAATATAGAGGTCCAATACAGATACAGAGCAATGCATTGGCTGCTTTAGAAGCAATTGATTTGGATGTTGCTGAAGACATTATGAATGCTGGCTGCATCACTGGTCAAAGGATTAATGGCTTGGTTGATGGTATTTCTGGCAACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGCAAGTTTGATACGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACAAGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAG.........................................................................................................................................................GTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAG.........................................................................................................................................................................GTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGG...................................................................................................................GTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG.........................................................................................................................................................GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTTTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG.........................................................................................................................................................................................................................CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTTTAGGAGGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG.............................................................................GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738383" ref_strand="+" ref_description="SGN-E738383 [LC13BG04]">
      <seq>cattgttcactccagcagtggaacgtggacttccagtgacacgagttatcagtcgcatgactttgcagcagatccttgcacgtgctgttggtgaggagataattatgaatgaaagtaatgttgtagactttgaggatgatggagagaaggttactgtggttcttgagaatggacaacgatttacaggtgatcttctggttggtgctgatggcataagatctaaggtacggactaatttattcggacccagtgaagctacttactctggctacacttgttatactggaattgcagatttcgttccagctgatattgatacagttgggtaccgcgtctttttgggccacaaacagtactttgtttcttcagatgtggggggaggcaagatgcagtggtatgcattttacaatgaaccagctggtggtgcggatgccccaaacggtaaaaaggaaagattgcttaaaatatttgggggatggtgtgacaatgttatagacctattagttgccacagatgaagatgcaattcttcgtcgtgacatctatgatagaccgccaacctttagttggggaagaggtcgtgttacattgcttggggactccgtccatgccatgcagcctaatttgggtcaagggggatgcatggccatagaggatagctatcaactagcactggaacttgaaaaagcatgcagtcgaagtgcagagtctggaagccctgtggatatcatctcatctttaaggagctatgaaagtgctagaaaacttcgagttggagtcatccatggactggctagaatggctgcaatcatggcatctacttacaaggcttatcttgccgtcggacttggtccactatcatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="50623" stop="53478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50918" g_stop="51067" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51068" i_stop="51220" i_length="153">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51221" g_stop="51295" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="224" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51296" i_stop="51464" i_length="169">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51465" g_stop="51565" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51566" i_stop="51680" i_length="115">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51681" g_stop="51796" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="441" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51797" i_stop="52383" i_length="587">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52384" g_stop="52595" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="653" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52749" g_stop="52840" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="745" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53058" g_stop="53172" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="860" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53274" g_stop="53279" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="866" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E738383" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50918" e_stop="51067"/>
          <exon e_start="51221" e_stop="51295"/>
          <exon e_start="51465" e_stop="51565"/>
          <exon e_start="51681" e_stop="51796"/>
          <exon e_start="52384" e_stop="52595"/>
          <exon e_start="52749" e_stop="52840"/>
          <exon e_start="53058" e_stop="53172"/>
          <exon e_start="53274" e_stop="53279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACAAGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAGGTATCTGGCTATTTCCAAAACTCAAAATATCAAGAAAGATTAGAACTTCTGTTAGTTTCATTTAAGATTGTGTCGATCAGTGTCAATGGTAGCTAATTGTTGTGTCTTATTAATCAATTTTCATTATAGCTTCTCATGTTTGTGTGAAATCAGGTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAGGTATTCAAAATCAGTCTCATTCTATTTCCTTCTAATATTGCTACTTGTGTTGATTACAAGGATAGAGTAACTTGTCCATATGTTACTTTGAGATTGTGGTCCATGTTAAAAAAGTAGTTGGTCAATTCGGCTTGGTTTAGAAGATCTCAAACATTGGTGTTTATTGTAGGTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGGGTATGATATTCTTACTTATCGGATTGTCTTTTCCCTCTTCATGTCCTTAGCTGGTCCCCTTATGCTCATGCTATGTTGTCATAGTAAAGGTTAAATTCAGATTTCTTTTCTGAAGGTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACGGTAAGAGTTTTTAGGCCGTTTGTAGTTCAGGATATAAACGTGCTTACTAGAAGACGTTTCTGAATGCTTGACTTGTTAAGTAATGTCTATATAACCCAAGGGGTTTCTCGAGGATTTTTCCTTGTTGAGACCTGATTATAGTGCTGCAATAAGGTAAAGAAGAAGTCAAGATTAGAATGAGATAGATTCAATGAATTGTGAGTTGGAAAGTTTTGAATTGAAGTGCTGATTCATGCATAATCTAACTTTTGGTAAGCAGTTGCACTCTTACTCATCTAATTCATTTCTGAAGAGTTTCAGAGAATGATGCACCACAATTCTTTGTTTCTACTCATAGATGTGAGGTCCTTACTTCATCACAGAAATTGTTTATTAACTTGTATATGAAACGCATGTCTTATTATATTGTTGTAGTAGTACCAGTTTGGATAAAAGAATCACAAACTTTTGGGGGGTTGGCACTACATGAGATGAGTATGGTATCTTGACACTCTAAATTGCCACTATGATGCTCAAGAGGTTAGGAAATATATGTAGTCATATTGTCATTACATTGGTTGTCAATAGTTTATCTGTTCATGCTGCAGGTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAGGTACATTCTTTATAGTAACCTTTTTTACTTCACTTAATTAACATGGTATTATTGGTCGATTCTATCCCTTAGTCCCTTCTATCTAAGAACTAAGAAGTAGGGTATTATTGTTATGTTGTGTAAGCCACTGAACGTTTCCTTTTACAACTACAGGATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAGGTAATCCATTATTTATTGGCTCAAGTGATGTATAGTGGTTGCTTGAATACACGCTGTTTGACAATTGAAAAGTCATTTAAAATTGGCTGAAGTCTTAACTTCACCTTACCACCAGCCAAGAAAGCCTGCTTTAAATGCCTAAATGAAGATGAATTGACTTGAACAACTTCTGTTTCTGCCAGTTAGCTGATCCTTTTATGATTTTCTGTATCCACAGCTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTG</genome_strand>
        <mrna_strand>CAT-TGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACACGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAG.........................................................................................................................................................GTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAG.........................................................................................................................................................................GTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGG...................................................................................................................GTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG.........................................................................................................................................................GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG.........................................................................................................................................................................................................................CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGCCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739734" ref_strand="+" ref_description="SGN-E739734 [LC18CF04]">
      <seq>ccattttacaatgaaccagctggtggtgcggatgccccaaacggtaaaaaggaaagattgcttaaaatatttgggggatggtgtgacaatgttatagacctattagttgccacagatgaagatgcaattcttcgtcgtgacatctatgatagaccgccaacctttagttggggaagaggtcgtgttacattgcttggggactccgtccatgccatgcagcctaatttgggtcaagggggatgcatggccatagaggatagctatcaactagcactggaacttgaaaaagcatgcagtcgaagtgcagagtctggaagccctgtggatatcatctcatctttaaggagctatgaaagtgctagaaaacttcgagttggagtcatccatggactggctagaatggctgcaatcatggcatctacttacaaggcttatcttggcgtcggacttggtccactatcatttttgacgcagtatagaataccacatcctggaagagttggtggaagagtttttattgacttgggaatgcctctgatgttaagttgggttctaggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgcggggaatggctcttctggtttagaagctattgttttaagcagagatgaggatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="51455" stop="54958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51754" g_stop="51796" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51797" i_stop="52383" i_length="587">
            <donor d_prob="0.731" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52384" g_stop="52595" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="255" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52749" g_stop="52840" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="347" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53058" g_stop="53172" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="462" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53274" g_stop="53377" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="566" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359">
            <donor d_prob="0.085" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="612" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="677" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54057" g_stop="54143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="764" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="819" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54604" g_stop="54658" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="874" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E739734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51754" e_stop="51796"/>
          <exon e_start="52384" e_stop="52595"/>
          <exon e_start="52749" e_stop="52840"/>
          <exon e_start="53058" e_stop="53172"/>
          <exon e_start="53274" e_stop="53377"/>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACGGTAAGAGTTTTTAGGCCGTTTGTAGTTCAGGATATAAACGTGCTTACTAGAAGACGTTTCTGAATGCTTGACTTGTTAAGTAATGTCTATATAACCCAAGGGGTTTCTCGAGGATTTTTCCTTGTTGAGACCTGATTATAGTGCTGCAATAAGGTAAAGAAGAAGTCAAGATTAGAATGAGATAGATTCAATGAATTGTGAGTTGGAAAGTTTTGAATTGAAGTGCTGATTCATGCATAATCTAACTTTTGGTAAGCAGTTGCACTCTTACTCATCTAATTCATTTCTGAAGAGTTTCAGAGAATGATGCACCACAATTCTTTGTTTCTACTCATAGATGTGAGGTCCTTACTTCATCACAGAAATTGTTTATTAACTTGTATATGAAACGCATGTCTTATTATATTGTTGTAGTAGTACCAGTTTGGATAAAAGAATCACAAACTTTTGGGGGGTTGGCACTACATGAGATGAGTATGGTATCTTGACACTCTAAATTGCCACTATGATGCTCAAGAGGTTAGGAAATATATGTAGTCATATTGTCATTACATTGGTTGTCAATAGTTTATCTGTTCATGCTGCAGGTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAGGTACATTCTTTATAGTAACCTTTTTTACTTCACTTAATTAACATGGTATTATTGGTCGATTCTATCCCTTAGTCCCTTCTATCTAAGAACTAAGAAGTAGGGTATTATTGTTATGTTGTGTAAGCCACTGAACGTTTCCTTTTACAACTACAGGATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAGGTAATCCATTATTTATTGGCTCAAGTGATGTATAGTGGTTGCTTGAATACACGCTGTTTGACAATTGAAAAGTCATTTAAAATTGGCTGAAGTCTTAACTTCACCTTACCACCAGCCAAGAAAGCCTGCTTTAAATGCCTAAATGAAGATGAATTGACTTGAACAACTTCTGTTTCTGCCAGTTAGCTGATCCTTTTATGATTTTCTGTATCCACAGCTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGGGTAGGGAATATGCAGGCCTTTTCTTGGTTCAATATTTTAAACATGAACTTGATTTTACTTATGTGATCAGCCTATAGCTAGAGAGTGAAATTGCAAAGCCATATATTTATTTTTACTTCTAATGCTTCTTGCGGTGAACCCTTCCTTTTATCACAGTTCAATGGTTCATGATTATTCTGTTGATTCTGTTTAGTCGGAACTTTTACTCGAAATTCTTTTATTGTACCTAAGCTTCAAATTATTAGTTCTTTTTTGTTCGGAAAAATTAGAAGTTGAGCTTTCCCTCATCCTTGATGAGTTCAATGGATTCTTGGAAGTTGATAAACTAGTAGTTTGACTCGGCTTTTTTTTTCTTGCAGGGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTG</genome_strand>
        <mrna_strand>CCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG.........................................................................................................................................................GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG.........................................................................................................................................................................................................................CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729376" ref_strand="+" ref_description="SGN-E729376 [LA20DE04]">
      <seq>accgccaacctttagttggggaagaggtcgtgaaacattgcttggggactccgtccatgccatgcagcctaatttgggtcaagggggatgcatggccatagaggatagctatcaactagcactggaacttgaaaaagcatgcagacgaagtgcagagtctggaagccctgtggatatcatctcatctttaaggagctatgaaagtgctagaaaacttcgagttggagtcatccatggactggctagaatggctgcaatcatggcatctacttacaaggcttatcttggcgtcggacttggtccactatcatttttgacgcagtatagaataccacatcctggaagagttggtggaagagtttttattgacttgggaatgcctctgatgttaagttgggttctaggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="52193" stop="54374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52493" g_stop="52595" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52749" g_stop="52840" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="195" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53058" g_stop="53172" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="310" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53274" g_stop="53377" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="414" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359">
            <donor d_prob="0.085" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="460" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="525" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54057" g_stop="54074" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="543" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E729376" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52493" e_stop="52595"/>
          <exon e_start="52749" e_stop="52840"/>
          <exon e_start="53058" e_stop="53172"/>
          <exon e_start="53274" e_stop="53377"/>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAGGTACATTCTTTATAGTAACCTTTTTTACTTCACTTAATTAACATGGTATTATTGGTCGATTCTATCCCTTAGTCCCTTCTATCTAAGAACTAAGAAGTAGGGTATTATTGTTATGTTGTGTAAGCCACTGAACGTTTCCTTTTACAACTACAGGATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAGGTAATCCATTATTTATTGGCTCAAGTGATGTATAGTGGTTGCTTGAATACACGCTGTTTGACAATTGAAAAGTCATTTAAAATTGGCTGAAGTCTTAACTTCACCTTACCACCAGCCAAGAAAGCCTGCTTTAAATGCCTAAATGAAGATGAATTGACTTGAACAACTTCTGTTTCTGCCAGTTAGCTGATCCTTTTATGATTTTCTGTATCCACAGCTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGGGTAGGGAATATGCAGGCCTTTTCTTGGTTCAATATTTTAAACATGAACTTGATTTTACTTATGTGATCAGCCTATAGCTAGAGAGTGAAATTGCAAAGCCATATATTTATTTTTACTTCTAATGCTTCTTGCGGTGAACCCTTCCTTTTATCACAGTTCAATGGTTCATGATTATTCTGTTGATTCTGTTTAGTCGGAACTTTTACTCGAAATTCTTTTATTGTACCTAAGCTTCAAATTATTAGTTCTTTTTTGTTCGGAAAAATTAGAAGTTGAGCTTTCCCTCATCCTTGATGAGTTCAATGGATTCTTGGAAGTTGATAAACTAGTAGTTTGACTCGGCTTTTTTTTTCTTGCAGGGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGC</genome_strand>
        <mrna_strand>ACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGAAACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG.........................................................................................................................................................GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGACGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG.........................................................................................................................................................................................................................CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331553" ref_strand="+" ref_description="SGN-E331553 [cTOD-9-L3]">
      <seq>ctggctagaatggctgcaatcatggcatctacttacaaggcttatcttggcgtcggacttggtccactatcatttttgacgcagtatagaataccacatcctggaagagttggtggaagagtttttattgacttgggaatgcctctgatgttaagttgggttctaggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgcggggaatggctcttctggtttagaagctattgttttaagcagagatgaagatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="52801" stop="55156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53101" g_stop="53172" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53274" g_stop="53377" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="176" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359">
            <donor d_prob="0.085" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="287" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54057" g_stop="54143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="429" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54604" g_stop="54692" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54784" g_stop="54856" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="591" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E331553" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53101" e_stop="53172"/>
          <exon e_start="53274" e_stop="53377"/>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54692"/>
          <exon e_start="54784" e_stop="54856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCAGTATGGAAATCTGTCTCTCTTTGAAATATGAGTAGCTAAGTTGTCTGATTTAGCATAGATCTTCTTATGATATGGATTTGGATTTCTATCATTTTTTGCAGTTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGGGTAGGGAATATGCAGGCCTTTTCTTGGTTCAATATTTTAAACATGAACTTGATTTTACTTATGTGATCAGCCTATAGCTAGAGAGTGAAATTGCAAAGCCATATATTTATTTTTACTTCTAATGCTTCTTGCGGTGAACCCTTCCTTTTATCACAGTTCAATGGTTCATGATTATTCTGTTGATTCTGTTTAGTCGGAACTTTTACTCGAAATTCTTTTATTGTACCTAAGCTTCAAATTATTAGTTCTTTTTTGTTCGGAAAAATTAGAAGTTGAGCTTTCCCTCATCCTTGATGAGTTCAATGGATTCTTGGAAGTTGATAAACTAGTAGTTTGACTCGGCTTTTTTTTTCTTGCAGGGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTT</genome_strand>
        <mrna_strand>CTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA.....................................................................................................TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG.......................................................................................................................................................................................................................................................................................................................................................................GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAAGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332225" ref_strand="+" ref_description="SGN-E332225 [cTOD-17-K11]">
      <seq>taggaggcaatggggacaagcttgaaggcagaataaaacattgcaggctatctgagaaagcaaatgaccaattgagaaaatggtttgaagatgatgatgctttagagcgtgctactgatgcagagtggttacttttacctgcggggaatggctcttctggtttagaagctattgttttaagcagagatgaggatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaagggaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggaaattgtacagcattttatagcaaacatcaggcgttgagcaatttaagcatagntaattttgtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="53436" stop="55419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53737" g_stop="53782" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="59" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53893" g_stop="53957" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="124" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54057" g_stop="54143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="211" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="266" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54604" g_stop="54692" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="355" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54784" g_stop="54868" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="440" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54946" g_stop="55119" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="614" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E332225" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53737" e_stop="53782"/>
          <exon e_start="53893" e_stop="53957"/>
          <exon e_start="54057" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54692"/>
          <exon e_start="54784" e_stop="54868"/>
          <exon e_start="54946" e_stop="55119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAAGTATGTAGACTAAGGAATTATGCACATAAAAAATTGTGGTTTCCATTGTTACATAATTAACAAGTATGAATTTTATGGGAGTATTAATACACTGTATTGTGGTAATGAAGGCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGAGTGAGTTTGACAAGCTTAATCTTTACAAATTTCATTTATATGTATGTCCTGTTTTTCTTGTTTGCTTGCTAATTTTGATGCTTAATTTTTATCTTTCAGGTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACT</genome_strand>
        <mrna_strand>GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA..............................................................................................................GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA...................................................................................................GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG.............................................................................GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGGAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGNTAATTTTGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233798" ref_strand="+" ref_description="SGN-E233798 [cLED-14-H15]">
      <seq>gctcttctggtttagaagctattgttttaagcagagatgaggatgtcccttgcactgtcgggtccatctcacatacaaatattcctggaaaatcaatagttttacctttgccacaggtatctgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="53783" stop="55290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54083" g_stop="54143" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54459" g_stop="54513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="116" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54604" g_stop="54692" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="205" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54784" g_stop="54868" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="290" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54946" g_stop="54990" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E233798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54083" e_stop="54143"/>
          <exon e_start="54459" e_stop="54513"/>
          <exon e_start="54604" e_stop="54692"/>
          <exon e_start="54784" e_stop="54868"/>
          <exon e_start="54946" e_stop="54990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGGGTATGCTTTTAGGTTATGGTTTATTGGATTTAAGATTGTTCATAGCTGACTGTTACGTCTTTGTGGCACATAGTTTAAAAGATTTAAATAGTTCAAGTCATTTTATTACTTAGCTCTCGACATAATCATACACTATGGTGTGCATCAGTTGCAAATATTTCACCATCAATCTCCTCTAATTTACACATCCAATCCATGCACATACTTTCAAAACTGTGAACCAGACAAAAAATGAATTTCACTTGGCTGTAAAGGGAGAATGTATAACGCAATATTGTTTTATTAGAATAGTCACTGACAGGCTTTTGGTTTCAGGTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAGGTGATTGCCATATTATTCTATAGCTCAGTATCCTGGACCTTCTTCTGGTGAATGCATGATTGAATTGTCAAATTTCTTTTTTAATCTCAGGTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCT</genome_strand>
        <mrna_strand>GCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG...........................................................................................................................................................................................................................................................................................................................GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG..........................................................................................GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG.............................................................................GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285177" ref_strand="+" ref_description="SGN-E285177 [cLER-20-B9]">
      <seq>tgaaatgcacgcccggatatcatgcaaagacggagcattttttgtaactgatttacgaagtgaacatggtacctgggttacagataatgaaggcagaagatatcggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaaggaaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggaaattgtacagcattttatatcaaacatcaggcgttgagcaatttaagcatagttaattttgtatactgtaggttttagaaaagatccataaacaagacaccatgaaagaaaatacagagattctcctaaagaaatctggagaatgtcatggacattgtctcttattctaccattgctaaaaatatattacttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="54309" stop="55550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54609" g_stop="54692" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.547" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54784" g_stop="54868" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="169" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54946" g_stop="55250" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="474" r_length="305" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E285177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54609" e_stop="54692"/>
          <exon e_start="54784" e_stop="54868"/>
          <exon e_start="54946" e_stop="55250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTAT</genome_strand>
        <mrna_strand>TGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA...........................................................................................TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG.............................................................................GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATATCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282576" ref_strand="+" ref_description="SGN-E282576 [cLER-18-J14]">
      <seq>ttacagatatttaaggcagaagatattggacgtctccaaacttccctacacgttttcatccatcagatgttatcgaatttggttctgataaggtgagattcatcaaagtattttctctttaacgcaaaactttggcattagcattattcttttaaaccgtcatgtgcaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaaggaaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggatattgtacagcattttatagcaaacatcaggcgttgagcaatttaagcatagttaattttgtatcctgaaggttttagaaaagatccatatacaagacaccatgaaagtaaatacagagattctcctaaagaaatctggagaatgtcatggacattgtctcttattctaccattgctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="54482" stop="55533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54686" g_stop="54692" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.547" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54784" g_stop="55233" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="457" r_length="450" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E282576" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54686" e_stop="54692"/>
          <exon e_start="54784" e_stop="55233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGAGTAAGTTCCATGTGTTCCTGTATACAACTCTACTATTAGATATCCCATTTTATGAAAACAATAGTTACGATTGATCTGCGTTATCATGTAGTAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAA</genome_strand>
        <mrna_strand>TTACAGA...........................................................................................TATTTAAGGCAGAAGATATTGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGATATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATCCTGAAGGTTTTAGAAAAGATCCATATACAAGACACCATGAAAGTAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225173" ref_strand="+" ref_description="SGN-E225173 [cLEL-17-H18](-)">
      <seq>atcgaatttggttctgataaggtgagattcatcaaagtattttctctttaacgcaaaactttggcattagcattattcttttaaaccgtcatgtgcaggcagcatttcgtgttaaagcaatgaaatttccactaaaaacttctgaaaggaaggaagagcgcgaagcagtggaggcagcgtaaagcttgacctgatataaacaggaaattgtacagcattttatagcaaacatcaggcgttgagcaatttaagcatagttaattttgtatactgtaggttttagaaaagatccataaacaagacaccatgaaagaaaatacagagattctcctaaagaaatctggagaatgtcatggacaatgtctcttattcaaccattgctaaaaatatattacttctctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0104A12-s6e5e/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0104A12.1" temp_strand="+" temp_description="C02HBa0104A12.1  AC215383.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0104A12 sequenced_by:kribb upload_account_name:korea">
        <position start="54548" stop="55565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54848" g_stop="55252" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="423"/>
      <MATCH_line gen_id="C02HBa0104A12.1" gen_strand="+" ref_id="SGN-E225173" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0104A12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54848" e_stop="55252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTATGT</genome_strand>
        <mrna_strand>ATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACAATGTCTCTTATTCAACCATTGCTAAAAATATATTACTTCTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>64</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="458" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="458" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="458" e_stop="1" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="458" stop="95"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="456" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTCTCAACAGACAGAAAGAAACCTTAAATTACCAAACTTCAGTTAATTAAACACAAAAATGGATTGGGTTAGAGGTGAAACAGTTGGCCATGGAAGCTTTGGCAAAGTTAGTTTTGTGATTCCGAGAAACCAGAGTACTCTGTTTTCTCCATCAATGGTGGTTAAGTCTTGTTCCGCTTCCTGCTCAGCTACTTTGATGAACGAGAAGATAATCTTGGATGAACTTAAGGGGTGCCCACAAATAATCAATTGCGTTGGTGACAGCTACAGTTATGAAAATGGCGAAAAGCTATACAATGTCTTGTTGGAGTATGCTTGTGGGGGTGCTTTGTCGGATAAATTAAAGAATTCCGGTGATCAGAGGTTGCCGGAGCTTGAAGTCAGGGAGTACACAAAGGGGTTACTCAGAGGGATTCATTATATCCACAAGAATGGTTTTGTTCACTGCGACAT</gDNA_template>
            <first_frame> F  F  S  Q  Q  T  E  R  N  L  K  L  P  N  F  S  *  L  N  T  K  M  D  W  V  R  G  E  T  V  G  H  G  S  F  G  K  V  S  F  V  I  P  R  N  Q  S  T  L  F  S  P  S  M  V  V  K  S  C  S  A  S  C  S  A  T  L  M  N  E  K  I  I  L  D  E  L  K  G  C  P  Q  I  I  N  C  V  G  D  S  Y  S  Y  E  N  G  E  K  L  Y  N  V  L  L  E  Y  A  C  G  G  A  L  S  D  K  L  K  N  S  G  D  Q  R  L  P  E  L  E  V  R  E  Y  T  K  G  L  L  R  G  I  H  Y  I  H  K  N  G  F  V  H  C  D   </first_frame>
            <second_frame>  F  S  L  N  R  Q  K  E  T  L  N  Y  Q  T  S  V  N  *  T  Q  K  W  I  G  L  E  V  K  Q  L  A  M  E  A  L  A  K  L  V  L  *  F  R  E  T  R  V  L  C  F  L  H  Q  W  W  L  S  L  V  P  L  P  A  Q  L  L  *  *  T  R  R  *  S  W  M  N  L  R  G  A  H  K  *  S  I  A  L  V  T  A  T  V  M  K  M  A  K  S  Y  T  M  S  C  W  S  M  L  V  G  V  L  C  R  I  N  *  R  I  P  V  I  R  G  C  R  S  L  K  S  G  S  T  Q  R  G  Y  S  E  G  F  I  I  S  T  R  M  V  L  F  T  A  T  </second_frame>
            <third_frame>   F  L  S  T  D  R  K  K  P  *  I  T  K  L  Q  L  I  K  H  K  N  G  L  G  *  R  *  N  S  W  P  W  K  L  W  Q  S  *  F  C  D  S  E  K  P  E  Y  S  V  F  S  I  N  G  G  *  V  L  F  R  F  L  L  S  Y  F  D  E  R  E  D  N  L  G  *  T  *  G  V  P  T  N  N  Q  L  R  W  *  Q  L  Q  L  *  K  W  R  K  A  I  Q  C  L  V  G  V  C  L  W  G  C  F  V  G  *  I  K  E  F  R  *  S  E  V  A  G  A  *  S  Q  G  V  H  K  G  V  T  Q  R  D  S  L  Y  P  Q  E  W  F  C  S  L  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="407" stop="3"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNTKMDWVRGETVGHGSFGKVSFVIPRNQSTLFSPSMVVKSCSASCSATLMNEKIILDELKGCPQIINCVGDSYSYENGEKLYNVLLEYACGGALSDKLKNSGDQRLPELEVREYTKGLLRGIHYIHKNGFVHCD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8186" PGL_stop="7563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8186" e_stop="7563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8186" e_stop="7563" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8186" stop="7624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8160" stop="7563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8151" stop="7601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8144" stop="7635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8142" stop="7594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCAATTTTTTTTTGCATACAAACCTCAGTCATGGAGTCTCCAATACTTCTCTTCCTTATCATCTTCTTATTCACGATTGGCAAAAATGCAGTTGTTGTTGAAGCAGAAGTTGATAGATTTGGTTTAGAACAAGTGGTGAGTGAAGATTTTGAGTTGCCAATGGGAATGTCGGGTGATGATGAGATCCAGTTGGATGGAAATGGAAGATCTCTATTGTGGAACAAATTCAAGTACTACATTTCGTACGGAGCATTATCAGCTAACAGAATCCCCTGCCCACCACGGTCTGGCAGATCGTATTACACGCACCATTGTTATCATGCTACAGGTCCAGCTCATCCTTACACTAGAGGTTGCTCTGCTATCACTCGTTGCCGTAGATGAACAATTAATATGATTTTCTATTTATTATTTTATCATCTATGCATTATAGTACCTTATTTGTCATTTCTGTGATATGGCTTGCGAATTGGGAGCTAGCTAGCTTTGTTCTGGTAGATCTACTACGTATGGACTGATATTTGGTGGAATTCTTATGTCTTTGTTTAGGTAAAATTAGTTTCAATTGTGTATGTGTTTTCCTATACACTCACTCTAATTTTCTCTTTCTATTCATATATG</gDNA_template>
            <first_frame> F  P  I  F  F  C  I  Q  T  S  V  M  E  S  P  I  L  L  F  L  I  I  F  L  F  T  I  G  K  N  A  V  V  V  E  A  E  V  D  R  F  G  L  E  Q  V  V  S  E  D  F  E  L  P  M  G  M  S  G  D  D  E  I  Q  L  D  G  N  G  R  S  L  L  W  N  K  F  K  Y  Y  I  S  Y  G  A  L  S  A  N  R  I  P  C  P  P  R  S  G  R  S  Y  Y  T  H  H  C  Y  H  A  T  G  P  A  H  P  Y  T  R  G  C  S  A  I  T  R  C  R  R  *  T  I  N  M  I  F  Y  L  L  F  Y  H  L  C  I  I  V  P  Y  L  S  F  L  *  Y  G  L  R  I  G  S  *  L  A  L  F  W  *  I  Y  Y  V  W  T  D  I  W  W  N  S  Y  V  F  V  *  V  K  L  V  S  I  V  Y  V  F  S  Y  T  L  T  L  I  F  S  F  Y  S  Y  M </first_frame>
            <second_frame>  F  Q  F  F  F  A  Y  K  P  Q  S  W  S  L  Q  Y  F  S  S  L  S  S  S  Y  S  R  L  A  K  M  Q  L  L  L  K  Q  K  L  I  D  L  V  *  N  K  W  *  V  K  I  L  S  C  Q  W  E  C  R  V  M  M  R  S  S  W  M  E  M  E  D  L  Y  C  G  T  N  S  S  T  T  F  R  T  E  H  Y  Q  L  T  E  S  P  A  H  H  G  L  A  D  R  I  T  R  T  I  V  I  M  L  Q  V  Q  L  I  L  T  L  E  V  A  L  L  S  L  V  A  V  D  E  Q  L  I  *  F  S  I  Y  Y  F  I  I  Y  A  L  *  Y  L  I  C  H  F  C  D  M  A  C  E  L  G  A  S  *  L  C  S  G  R  S  T  T  Y  G  L  I  F  G  G  I  L  M  S  L  F  R  *  N  *  F  Q  L  C  M  C  F  P  I  H  S  L  *  F  S  L  S  I  H  I   </second_frame>
            <third_frame>   S  N  F  F  L  H  T  N  L  S  H  G  V  S  N  T  S  L  P  Y  H  L  L  I  H  D  W  Q  K  C  S  C  C  *  S  R  S  *  *  I  W  F  R  T  S  G  E  *  R  F  *  V  A  N  G  N  V  G  *  *  *  D  P  V  G  W  K  W  K  I  S  I  V  E  Q  I  Q  V  L  H  F  V  R  S  I  I  S  *  Q  N  P  L  P  T  T  V  W  Q  I  V  L  H  A  P  L  L  S  C  Y  R  S  S  S  S  L  H  *  R  L  L  C  Y  H  S  L  P  *  M  N  N  *  Y  D  F  L  F  I  I  L  S  S  M  H  Y  S  T  L  F  V  I  S  V  I  W  L  A  N  W  E  L  A  S  F  V  L  V  D  L  L  R  M  D  *  Y  L  V  E  F  L  C  L  C  L  G  K  I  S  F  N  C  V  C  V  F  L  Y  T  H  S  N  F  L  F  L  F  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8186" stop="7800"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPIFFCIQTSVMESPILLFLIIFLFTIGKNAVVVEAEVDRFGLEQVVSEDFELPMGMSGDDEIQLDGNGRSLLWNKFKYYISYGALSANRIPCPPRSGRSYYTHHCYHATGPAHPYTRGCSAITRCRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11307" PGL_stop="10095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11307" e_stop="10095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11307" e_stop="10095" e_length="1213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11307" stop="10781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11307" stop="10834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11293" stop="10538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11292" stop="10711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10705" stop="10095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACACTTCTCATAGTGTGGTATCCCTTTTAGCCCATCTTTCATTCTAATATTTCTATATATCCTCTTGTTTTTTTATTTTTACCTTACAAAAACAAATCATGGATTTACAAAATATTGCTCACTCACTAGAACTTGGATTCTCCAATAGCAATATTGAAATGATACCTTTACAATCACCACTCCATAACTCCAATTACTTAATGAATTCTCCTCCATCTAATTTCTCATTCATGGGCAATCCAATTGAAGAGCCAGCCGCGATGCCAATACTCTCATCGATCGATGAAATTATAGCATCGACTCATGGTAATGGAAATGATTACTCATGTTTGCAGAGGAGGAATTCTATGGAGGCTATGAGGGAGATGATTTTTCGTATCGCGATGATGCAACCAATTCACATTGATCCAGAATCAGTTAAACCTCCCAAGAGGAAAAATGTTAAGATATCGAAGGATCCACAGAGTGTGGCAGCCAGGCATCGGAGGGAACGAATAAGCGAAAGGATAAGGATTTTGCAAAGACTAGTCCCTGGAGGAACTAAAATGGATACTGCTTCAATGTTAGATGAGGCTGTCCATTATGTTAAGTTTTTAAAGAAGCAACTTCAATCACTAGAGCAAGCCGCGGTTAATAATAGGCCGATGATTTCTGGATTTTCAACAGCAATGTCATCACCAGGGGGGCCAATGAATTATAATTCAAGCTCTATTAGGGCATGCCAGCCTCATCAATCCATGAACTCTGGTGCACAAATGCTTAGTTAAAATAAAATGAAAATAACATTTGTTAAAGAATGACAAAAGTCTCACATCAGTGGTTAATGAGATGGATAGACTTCTTATAAGGGTTGGACAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCCTAAGACCTAATTTCACAGTTTCTACGCAGCGTCCTGATCATTACCATGCTAATGAGTAATGACTACTTTTTGTAAAGATTTGGTTAAATGGTGTGTATTTTCCAGCCTCATTCTTCAATCCCAAAGGCTAGTCTTAGGTTTCTCAATTTGTGCAATGTTAACTTTGTGCGAGAACTATGCTAATTTTTTCTGTATCGTTCCAATATCATAAGGGACTAGGTTTGCCTTGTGTTTACAATTCCAGTCTTGCGCTAGAAGCAAGGCAAATAGTGAGCAGAGTTGGACATTTTTTATTTAAAAGGTGTGGGTTC</gDNA_template>
            <first_frame> E  H  F  S  *  C  G  I  P  F  S  P  S  F  I  L  I  F  L  Y  I  L  L  F  F  Y  F  Y  L  T  K  T  N  H  G  F  T  K  Y  C  S  L  T  R  T  W  I  L  Q  *  Q  Y  *  N  D  T  F  T  I  T  T  P  *  L  Q  L  L  N  E  F  S  S  I  *  F  L  I  H  G  Q  S  N  *  R  A  S  R  D  A  N  T  L  I  D  R  *  N  Y  S  I  D  S  W  *  W  K  *  L  L  M  F  A  E  E  E  F  Y  G  G  Y  E  G  D  D  F  S  Y  R  D  D  A  T  N  S  H  *  S  R  I  S  *  T  S  Q  E  E  K  C  *  D  I  E  G  S  T  E  C  G  S  Q  A  S  E  G  T  N  K  R  K  D  K  D  F  A  K  T  S  P  W  R  N  *  N  G  Y  C  F  N  V  R  *  G  C  P  L  C  *  V  F  K  E  A  T  S  I  T  R  A  S  R  G  *  *  *  A  D  D  F  W  I  F  N  S  N  V  I  T  R  G  A  N  E  L  *  F  K  L  Y  *  G  M  P  A  S  S  I  H  E  L  W  C  T  N  A  *  L  K  *  N  E  N  N  I  C  *  R  M  T  K  V  S  H  Q  W  L  M  R  W  I  D  F  L  *  G  L  D  N  P  P  P  F  E  L  A  F  G  V  *  V  R  P  K  T  *  F  H  S  F  Y  A  A  S  *  S  L  P  C  *  *  V  M  T  T  F  C  K  D  L  V  K  W  C  V  F  S  S  L  I  L  Q  S  Q  R  L  V  L  G  F  S  I  C  A  M  L  T  L  C  E  N  Y  A  N  F  F  C  I  V  P  I  S  *  G  T  R  F  A  L  C  L  Q  F  Q  S  C  A  R  S  K  A  N  S  E  Q  S  W  T  F  F  I  *  K  V  W  V  </first_frame>
            <second_frame>  N  T  S  H  S  V  V  S  L  L  A  H  L  S  F  *  Y  F  Y  I  S  S  C  F  F  I  F  T  L  Q  K  Q  I  M  D  L  Q  N  I  A  H  S  L  E  L  G  F  S  N  S  N  I  E  M  I  P  L  Q  S  P  L  H  N  S  N  Y  L  M  N  S  P  P  S  N  F  S  F  M  G  N  P  I  E  E  P  A  A  M  P  I  L  S  S  I  D  E  I  I  A  S  T  H  G  N  G  N  D  Y  S  C  L  Q  R  R  N  S  M  E  A  M  R  E  M  I  F  R  I  A  M  M  Q  P  I  H  I  D  P  E  S  V  K  P  P  K  R  K  N  V  K  I  S  K  D  P  Q  S  V  A  A  R  H  R  R  E  R  I  S  E  R  I  R  I  L  Q  R  L  V  P  G  G  T  K  M  D  T  A  S  M  L  D  E  A  V  H  Y  V  K  F  L  K  K  Q  L  Q  S  L  E  Q  A  A  V  N  N  R  P  M  I  S  G  F  S  T  A  M  S  S  P  G  G  P  M  N  Y  N  S  S  S  I  R  A  C  Q  P  H  Q  S  M  N  S  G  A  Q  M  L  S  *  N  K  M  K  I  T  F  V  K  E  *  Q  K  S  H  I  S  G  *  *  D  G  *  T  S  Y  K  G  W  T  I  L  L  P  L  S  *  L  L  G  C  E  L  G  L  R  P  N  F  T  V  S  T  Q  R  P  D  H  Y  H  A  N  E  *  *  L  L  F  V  K  I  W  L  N  G  V  Y  F  P  A  S  F  F  N  P  K  G  *  S  *  V  S  Q  F  V  Q  C  *  L  C  A  R  T  M  L  I  F  S  V  S  F  Q  Y  H  K  G  L  G  L  P  C  V  Y  N  S  S  L  A  L  E  A  R  Q  I  V  S  R  V  G  H  F  L  F  K  R  C  G  F </second_frame>
            <third_frame>   T  L  L  I  V  W  Y  P  F  *  P  I  F  H  S  N  I  S  I  Y  P  L  V  F  L  F  L  P  Y  K  N  K  S  W  I  Y  K  I  L  L  T  H  *  N  L  D  S  P  I  A  I  L  K  *  Y  L  Y  N  H  H  S  I  T  P  I  T  *  *  I  L  L  H  L  I  S  H  S  W  A  I  Q  L  K  S  Q  P  R  C  Q  Y  S  H  R  S  M  K  L  *  H  R  L  M  V  M  E  M  I  T  H  V  C  R  G  G  I  L  W  R  L  *  G  R  *  F  F  V  S  R  *  C  N  Q  F  T  L  I  Q  N  Q  L  N  L  P  R  G  K  M  L  R  Y  R  R  I  H  R  V  W  Q  P  G  I  G  G  N  E  *  A  K  G  *  G  F  C  K  D  *  S  L  E  E  L  K  W  I  L  L  Q  C  *  M  R  L  S  I  M  L  S  F  *  R  S  N  F  N  H  *  S  K  P  R  L  I  I  G  R  *  F  L  D  F  Q  Q  Q  C  H  H  Q  G  G  Q  *  I  I  I  Q  A  L  L  G  H  A  S  L  I  N  P  *  T  L  V  H  K  C  L  V  K  I  K  *  K  *  H  L  L  K  N  D  K  S  L  T  S  V  V  N  E  M  D  R  L  L  I  R  V  G  Q  S  S  S  L  *  A  S  F  W  G  V  S  *  A  *  D  L  I  S  Q  F  L  R  S  V  L  I  I  T  M  L  M  S  N  D  Y  F  L  *  R  F  G  *  M  V  C  I  F  Q  P  H  S  S  I  P  K  A  S  L  R  F  L  N  L  C  N  V  N  F  V  R  E  L  C  *  F  F  L  Y  R  S  N  I  I  R  D  *  V  C  L  V  F  T  I  P  V  L  R  *  K  Q  G  K  *  *  A  E  L  D  I  F  Y  L  K  G  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11258" stop="10539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFYISSCFFIFTLQKQIMDLQNIAHSLELGFSNSNIEMIPLQSPLHNSNYLMNSPPSNFSFMGNPIEEPAAMPILSSIDEIIASTHGNGNDYSCLQRRNSMEAMREMIFRIAMMQPIHIDPESVKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAVHYVKFLKKQLQSLEQAAVNNRPMISGFSTAMSSPGGPMNYNSSSIRACQPHQSMNSGAQMLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22056" PGL_stop="26466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22102" e_stop="22460"/>
            <exon e_start="22540" e_stop="22736"/>
            <exon e_start="23283" e_stop="23316"/>
            <exon e_start="24919" e_stop="25837"/>
            <exon e_start="26020" e_stop="26466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.946" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22102" e_stop="22460" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="22540" e_stop="22736" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.946">
            <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23283" e_stop="23316" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23317" i_stop="24918" i_length="1602"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="24919" e_stop="25837" e_length="919"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26020" e_stop="26466" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="24919" stop="24961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24950" stop="25380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24950" stop="25357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25062" stop="25693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25062" stop="25684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25062" stop="25525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25062" stop="25520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25100" stop="25274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25329" stop="25837"/>
              <exon start="26020" stop="26354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25395" stop="25750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25408" stop="25642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25427" stop="25837"/>
              <exon start="26020" stop="26032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25431" stop="25837"/>
              <exon start="26020" stop="26253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25542" stop="25837"/>
              <exon start="26020" stop="26466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="25837"/>
              <exon start="26020" stop="26466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT : GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG : ATGGATCTGGTGGGATCATTTGACTTCTGGAATG : GGTGGGCCGGAAAATAAAAGGTCGTGAGACAAATTACCCGGGGGTCATAGCGAGGAGACCAAATAATGCGCACACACACGTTGTGGGACCCTACACCTACTTGAAGCATCAATCACATAATGGGGAGCACCACCCCTGTGATCTGAATTTAATCCAAATTTGCTTGTAAATTCGAATTGAACAAGAAATAATTGAACACATCATCAATGATGTGTGGGTGTCGTTTTAGTAGGGAACAAATTATTCCTTATCTTGAATTTTCCTTATTTTGTTTTTTTATTGGATTTGAACAGATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA : ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</gDNA_template>
            <first_frame> I  T  L  P  N  N  N  H  R  S  A  V  Y  G  E  Q  *  L  Q  Q  I  F  L  *  Q  L  Y  V  A  K  A  R  R  M  *  R  I  R  F  G  K  T  F  T  F  R  *  K  I  G  T  K  R  L  H  R  L  P  *  *  R  N  D  *  G  A  F  V  T  *  M  G  Y  I  F  I  Y  T  S  P  E  D  F  T  R  N  C  *  A  F  S  W  I  G  Q  C  Y  *  V  L  A  *  P  S  K  R  Q  W  R  I  L  P  S  S  F  Q  I  L  N  M :   *  S  C  I  T  G  *  G  I  S  C  V  L  V  I  Y  W  K  F  G  *  K  S  *  S  G  F  *  *  E  C  W  R  T  *  K  I  *  *  R  N  Q  H  D  G  C  K  S  S  L  *  E  Q  S  I  C  *  N  Y  C  Q  P  S  L  E   : D  G  S  G  G  I  I  *  L  L  E  W :   V  G  R  K  I  K  G  R  E  T  N  Y  P  G  V  I  A  R  R  P  N  N  A  H  T  H  V  V  G  P  Y  T  Y  L  K  H  Q  S  H  N  G  E  H  H  P  C  D  L  N  L  I  Q  I  C  L  *  I  R  I  E  Q  E  I  I  E  H  I  I  N  D  V  W  V  S  F  *  *  G  T  N  Y  S  L  S  *  I  F  L  I  L  F  F  Y  W  I  *  T  D  Y  Q  E  K  A  T  T  Q  A  F  V  L  Q  D  K  S  V  D  P  E  L  I  I  V  A  F  R  G  T  E  F  F  N  S  D  D  W  I  S  D  F  N  L  S  W  Y  D  I  P  G  M  G  K  V  H  A  G  F  M  K  A  L  G  L  Q  K  S  L  G  W  P  K  N  I  V  Q  T  D  T  N  N  I  N  Q  P  P  P  A  Y  Y  F  L  R  K  L  L  K  Q  L  L  E  K  N  E  K  A  R  F  L  V  T  G  H  S  L  G  G  A  L  A  I  L  F  P  A  I  L  A  F  H  E  E  S  W  L  L  K  R  L  G  G  I  Y  T  F  G  Q  P  R  V  G  D  E  S  F  I  E  Y  M  N  G  Q  L  T  K  H  E  V  P  Y  Y  R  V  V  Y  S  N  D  M  V  P  R  L  P  F  D  N  S  T  F  L  F  K  H  F  G  T  C  I  Y  Y  N  S  L  Y  R  E  K  :  I  L  V  E  E  P  D  K  N  G  S  F  L  L  M  F  I  P  K  M  L  N  A  A  W  E  L  I  R  S  C  I  L  P  C  V  H  G  R  K  Y  Q  E  G  G  L  L  L  C  M  R  V  I  G  L  L  F  P  G  M  P  A  H  C  P  Q  D  Y  V  N  S  T  R  L  G  S  S  D  H  S  T  E  D  V  A  K  Y  Q  K  I  G  I  V  P  A  *  L  *  N  N  *  L  P  S  V  C  F  L  E  F  L  I  L  H  I  S  F  S  L  H  Q  C  I  I  R  Y  L  I  D  L  K  L  E  S  S  P  W  R  T  K  *  K  I  H  F  I  Q  W  N </first_frame>
            <second_frame>  L  L  Y  Q  I  I  I  I  D  L  Q  Y  M  A  S  N  S  C  N  K  S  F  C  S  N  Y  M  L  L  K  P  E  E  C  S  V  L  D  L  A  K  L  L  L  S  G  K  K  L  G  Q  K  D  F  I  D  C  P  N  E  E  M  T  K  E  P  L  S  R  R  W  V  I  F  L  S  I  L  V  Q  K  I  L  L  A  T  A  K  P  L  A  G  L  G  N  A  I  E  Y  W  L  N  L  Q  N  V  N  G  G  F  F  R  L  L  F  K  S  L  I   : C  K  A  V  S  P  D  K  E  S  A  A  Y  L  S  F  I  G  N  L  D  K  R  V  D  L  D  F  S  K  N  V  G  G  R  R  R  Y  D  E  G  I  S  M  M  A  A  K  A  A  Y  E  N  K  A  Y  V  E  T  T  V  N  H  H  W  K  :  M  D  L  V  G  S  F  D  F  W  N   : G  W  A  G  K  *  K  V  V  R  Q  I  T  R  G  S  *  R  G  D  Q  I  M  R  T  H  T  L  W  D  P  T  P  T  *  S  I  N  H  I  M  G  S  T  T  P  V  I  *  I  *  S  K  F  A  C  K  F  E  L  N  K  K  *  L  N  T  S  S  M  M  C  G  C  R  F  S  R  E  Q  I  I  P  Y  L  E  F  S  L  F  C  F  F  I  G  F  E  Q  I  I  K  R  K  L  Q  H  K  H  S  C  F  K  I  K  A  W  T  L  S  *  L  L  L  H  L  E  E  L  N  S  S  I  L  M  I  G  F  L  T  L  I  S  L  G  M  T  F  P  A  W  A  K  S  M  P  D  L  *  K  L  S  A  Y  K  R  A  W  D  G  P  K  I  L  Y  K  L  I  L  I  I  L  I  S  H  L  Q  P  T  I  S  *  E  N  C  S  N  N  F  W  R  K  M  K  R  Q  G  F  *  L  P  V  T  A  *  V  E  H  L  Q  F  C  F  Q  Q  Y  *  H  S  M  R  N  L  G  C  *  K  D  *  G  A  F  T  H  L  V  N  Q  E  L  E  M  K  V  L  L  N  I  *  M  D  N  *  Q  N  M  R  F  H  T  T  E  L  C  T  A  M  T  W  Y  Q  D  C  H  L  T  I  L  L  S  C  S  S  T  L  E  L  A  S  I  T  I  A  S  T  E  K  K :   F  *  L  K  N  Q  T  R  M  G  R  F  C  *  C  L  Y  Q  R  C  *  T  Q  L  G  S  *  S  E  A  V  F  Y  H  V  Y  T  D  E  S  I  R  K  A  G  F  F  Y  A  *  E  *  L  A  C  Y  S  Q  A  C  L  L  I  V  L  R  I  M  L  T  L  P  G  L  D  H  L  I  I  P  L  K  T  L  Q  S  I  K  R  L  A  *  Y  Q  H  N  Y  K  I  I  N  Y  P  V  C  A  F  *  N  F  L  S  Y  I  L  V  F  P  C  T  N  V  L  L  D  I  *  L  I  *  S  L  N  R  V  L  G  E  Q  S  E  K  F  I  L  S  N  G   </second_frame>
            <third_frame>   Y  F  T  K  *  *  S  S  I  C  S  I  W  R  A  I  V  A  T  N  L  S  V  A  T  I  C  C  *  S  Q  K  N  V  A  Y  *  I  W  Q  N  F  Y  F  P  V  K  N  W  D  K  K  T  S  S  T  A  L  M  K  K  *  L  R  S  L  C  H  V  D  G  L  Y  F  Y  L  Y  *  S  R  R  F  Y  S  Q  L  L  S  L  *  L  D  W  A  M  L  L  S  T  G  L  T  F  K  T  S  M  A  D  S  S  V  F  F  S  N  P  *  Y  :  V  K  L  Y  H  R  I  R  N  Q  L  R  T  C  H  L  L  E  I  W  I  K  E  L  I  W  I  L  V  R  M  L  E  D  V  E  D  M  M  K  E  S  A  *  W  L  Q  K  Q  L  M  R  T  K  H  M  L  K  L  L  S  T  I  I  G  R :   W  I  W  W  D  H  L  T  S  G  M  :  G  G  P  E  N  K  R  S  *  D  K  L  P  G  G  H  S  E  E  T  K  *  C  A  H  T  R  C  G  T  L  H  L  L  E  A  S  I  T  *  W  G  A  P  P  L  *  S  E  F  N  P  N  L  L  V  N  S  N  *  T  R  N  N  *  T  H  H  Q  *  C  V  G  V  V  L  V  G  N  K  L  F  L  I  L  N  F  P  Y  F  V  F  L  L  D  L  N  R  L  S  R  E  S  Y  N  T  S  I  R  A  S  R  *  K  R  G  P  *  A  D  Y  C  C  I  *  R  N  *  I  L  Q  F  *  *  L  D  F  *  L  *  S  L  L  V  *  H  S  R  H  G  Q  S  P  C  R  I  Y  E  S  S  R  L  T  K  E  P  G  M  A  Q  K  Y  C  T  N  *  Y  *  *  Y  *  S  A  T  S  S  L  L  F  P  K  K  I  A  Q  T  T  S  G  E  K  *  K  G  K  V  F  S  Y  R  S  Q  L  R  W  S  T  C  N  F  V  S  S  N  I  S  I  P  *  G  I  L  A  V  E  K  I  R  G  H  L  H  I  W  S  T  K  S  W  R  *  K  F  Y  *  I  Y  E  W  T  I  N  K  T  *  G  S  I  L  Q  S  C  V  Q  Q  *  H  G  T  K  I  A  I  *  Q  F  Y  F  L  V  Q  A  L  W  N  L  H  L  L  Q  *  P  L  Q  R  K   : N  F  S  *  R  T  R  Q  E  W  V  V  S  V  N  V  Y  T  K  D  V  K  R  S  L  G  A  D  Q  K  L  Y  S  T  M  C  T  R  T  K  V  S  G  R  R  A  S  F  M  H  E  S  D  W  L  A  I  P  R  H  A  C  S  L  S  S  G  L  C  *  L  Y  Q  A  W  I  I  *  S  F  H  *  R  R  C  K  V  S  K  D  W  H  S  T  S  I  I  I  K  *  L  T  T  Q  C  V  L  F  R  I  S  Y  P  T  Y  *  F  F  P  A  P  M  Y  Y  *  I  F  N  *  F  E  A  *  I  E  S  L  E  N  K  V  K  N  S  F  Y  P  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25208" stop="25837"/>
                    <exon start="26020" stop="26307"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDYQEKATTQAFVLQDKSVDPELIIVAFRGTEFFNSDDWISDFNLSWYDIPGMGKVHAGFMKALGLQKSLGWPKNIVQTDTNNINQPPPAYYFLRKLLKQLLEKNEKARFLVTGHSLGGALAILFPAILAFHEESWLLKRLGGIYTFGQPRVGDESFIEYMNGQLTKHEVPYYRVVYSNDMVPRLPFDNSTFLFKHFGTCIYYNSLYREKILVEEPDKNGSFLLMFIPKMLNAAWELIRSCILPCVHGRKYQEGGLLLCMRVIGLLFPGMPAHCPQDYVNSTRLGSSDHSTEDVAKYQKIGIVPA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22103" stop="22460"/>
                    <exon start="22540" stop="22736"/>
                    <exon start="23283" stop="23316"/>
                    <exon start="24919" stop="24935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYQIIIIDLQYMASNSCNKSFCSNYMLLKPEECSVLDLAKLLLSGKKLGQKDFIDCPNEEMTKEPLSRRWVIFLSILVQKILLATAKPLAGLGNAIEYWLNLQNVNGGFFRLLFKSLICKAVSPDKESAAYLSFIGNLDKRVDLDFSKNVGGRRRYDEGISMMAAKAAYENKAYVETTVNHHWKMDLVGSFDFWNGWAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22056" e_stop="22460"/>
            <exon e_start="22540" e_stop="22736"/>
            <exon e_start="23283" e_stop="23316"/>
            <exon e_start="25212" e_stop="25837"/>
            <exon e_start="26020" e_stop="26466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22056" e_stop="22460" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22461" i_stop="22539" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22540" e_stop="22736" e_length="197"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.946">
            <gDNA_intron_boundary i_start="22737" i_stop="23282" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23283" e_stop="23316" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23317" i_stop="25211" i_length="1895"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="25212" e_stop="25837" e_length="626"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25838" i_stop="26019" i_length="182"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26020" e_stop="26466" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22056" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22096" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22098" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22102" stop="22460"/>
              <exon start="22540" stop="22546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22157" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22175" stop="22460"/>
              <exon start="22540" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22604" stop="22736"/>
              <exon start="23283" stop="23316"/>
              <exon start="25212" stop="25546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25329" stop="25837"/>
              <exon start="26020" stop="26354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25395" stop="25750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25400" stop="25837"/>
              <exon start="26020" stop="26078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25408" stop="25642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25427" stop="25837"/>
              <exon start="26020" stop="26032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25431" stop="25837"/>
              <exon start="26020" stop="26253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25542" stop="25837"/>
              <exon start="26020" stop="26466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25742" stop="25837"/>
              <exon start="26020" stop="26466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATACAAGCTGGAATGCACTTCTCTTCTATAAATAAATAAATAAATTACTTTACCAAATAATAATCATCGATCTGCAGTATATGGCGAGCAATAGTTGCAACAAATCTTTCTGTAGCAACTATATGTTGCTAAAGCCAGAAGAATGTAGCGTATTAGATTTGGCAAAACTTTTACTTTCCGGTAAAAAATTGGGACAAAAAGACTTCATCGACTGCCCTAATGAAGAAATGACTAAGGAGCCTTTGTCACGTAGATGGGTTATATTTTTATCTATACTAGTCCAGAAGATTTTACTCGCAACTGCTAAGCCTTTAGCTGGATTGGGCAATGCTATTGAGTACTGGCTTAACCTTCAAAACGTCAATGGCGGATTCTTCCGTCTTCTTTTCAAATCCTTAATAT : GTAAAGCTGTATCACCGGATAAGGAATCAGCTGCGTACTTGTCATTTATTGGAAATTTGGATAAAAGAGTTGATCTGGATTTTAGTAAGAATGTTGGAGGACGTAGAAGATATGATGAAGGAATCAGCATGATGGCTGCAAAAGCAGCTTATGAGAACAAAGCATATGTTGAAACTACTGTCAACCATCATTGGAAG : ATGGATCTGGTGGGATCATTTGACTTCTGGAATG : ATTATCAAGAGAAAGCTACAACACAAGCATTCGTGCTTCAAGATAAAAGCGTGGACCCTGAGCTGATTATTGTTGCATTTAGAGGAACTGAATTCTTCAATTCTGATGATTGGATTTCTGACTTTAATCTCTCTTGGTATGACATTCCCGGCATGGGCAAAGTCCATGCCGGATTTATGAAAGCTCTCGGCTTACAAAAGAGCCTGGGATGGCCCAAAAATATTGTACAAACTGATACTAATAATATTAATCAGCCACCTCCAGCCTACTATTTCCTAAGAAAATTGCTCAAACAACTTCTGGAGAAAAATGAAAAGGCAAGGTTTTTAGTTACCGGTCACAGCTTAGGTGGAGCACTTGCAATTTTGTTTCCAGCAATATTAGCATTCCATGAGGAATCTTGGCTGTTGAAAAGATTAGGGGGCATTTACACATTTGGTCAACCAAGAGTTGGAGATGAAAGTTTTATTGAATATATGAATGGACAATTAACAAAACATGAGGTTCCATACTACAGAGTTGTGTACAGCAATGACATGGTACCAAGATTGCCATTTGACAATTCTACTTTCTTGTTCAAGCACTTTGGAACTTGCATCTATTACAATAGCCTCTACAGAGAAAAA : ATTTTAGTTGAAGAACCAGACAAGAATGGGTCGTTTCTGTTAATGTTTATACCAAAGATGTTAAACGCAGCTTGGGAGCTGATCAGAAGCTGTATTCTACCATGTGTACACGGACGAAAGTATCAGGAAGGCGGGCTTCTTTTATGCATGAGAGTGATTGGCTTGCTATTCCCAGGCATGCCTGCTCATTGTCCTCAGGATTATGTTAACTCTACCAGGCTTGGATCATCTGATCATTCCACTGAAGACGTTGCAAAGTATCAAAAGATTGGCATAGTACCAGCATAATTATAAAATAATTAACTACCCAGTGTGTGCTTTTTAGAATTTCTTATCCTACATATTAGTTTTTCCCTGCACCAATGTATTATTAGATATTTAATTGATTTGAAGCTTGAATCGAGTCCTTGGAGAACAAAGTGAAAAATTCATTTTATCCAATGGAAT</gDNA_template>
            <first_frame> T  I  Q  A  G  M  H  F  S  S  I  N  K  *  I  N  Y  F  T  K  *  *  S  S  I  C  S  I  W  R  A  I  V  A  T  N  L  S  V  A  T  I  C  C  *  S  Q  K  N  V  A  Y  *  I  W  Q  N  F  Y  F  P  V  K  N  W  D  K  K  T  S  S  T  A  L  M  K  K  *  L  R  S  L  C  H  V  D  G  L  Y  F  Y  L  Y  *  S  R  R  F  Y  S  Q  L  L  S  L  *  L  D  W  A  M  L  L  S  T  G  L  T  F  K  T  S  M  A  D  S  S  V  F  F  S  N  P  *  Y  :  V  K  L  Y  H  R  I  R  N  Q  L  R  T  C  H  L  L  E  I  W  I  K  E  L  I  W  I  L  V  R  M  L  E  D  V  E  D  M  M  K  E  S  A  *  W  L  Q  K  Q  L  M  R  T  K  H  M  L  K  L  L  S  T  I  I  G  R :   W  I  W  W  D  H  L  T  S  G  M  :  I  I  K  R  K  L  Q  H  K  H  S  C  F  K  I  K  A  W  T  L  S  *  L  L  L  H  L  E  E  L  N  S  S  I  L  M  I  G  F  L  T  L  I  S  L  G  M  T  F  P  A  W  A  K  S  M  P  D  L  *  K  L  S  A  Y  K  R  A  W  D  G  P  K  I  L  Y  K  L  I  L  I  I  L  I  S  H  L  Q  P  T  I  S  *  E  N  C  S  N  N  F  W  R  K  M  K  R  Q  G  F  *  L  P  V  T  A  *  V  E  H  L  Q  F  C  F  Q  Q  Y  *  H  S  M  R  N  L  G  C  *  K  D  *  G  A  F  T  H  L  V  N  Q  E  L  E  M  K  V  L  L  N  I  *  M  D  N  *  Q  N  M  R  F  H  T  T  E  L  C  T  A  M  T  W  Y  Q  D  C  H  L  T  I  L  L  S  C  S  S  T  L  E  L  A  S  I  T  I  A  S  T  E  K  K :   F  *  L  K  N  Q  T  R  M  G  R  F  C  *  C  L  Y  Q  R  C  *  T  Q  L  G  S  *  S  E  A  V  F  Y  H  V  Y  T  D  E  S  I  R  K  A  G  F  F  Y  A  *  E  *  L  A  C  Y  S  Q  A  C  L  L  I  V  L  R  I  M  L  T  L  P  G  L  D  H  L  I  I  P  L  K  T  L  Q  S  I  K  R  L  A  *  Y  Q  H  N  Y  K  I  I  N  Y  P  V  C  A  F  *  N  F  L  S  Y  I  L  V  F  P  C  T  N  V  L  L  D  I  *  L  I  *  S  L  N  R  V  L  G  E  Q  S  E  K  F  I  L  S  N  G   </first_frame>
            <second_frame>  Q  Y  K  L  E  C  T  S  L  L  *  I  N  K  *  I  T  L  P  N  N  N  H  R  S  A  V  Y  G  E  Q  *  L  Q  Q  I  F  L  *  Q  L  Y  V  A  K  A  R  R  M  *  R  I  R  F  G  K  T  F  T  F  R  *  K  I  G  T  K  R  L  H  R  L  P  *  *  R  N  D  *  G  A  F  V  T  *  M  G  Y  I  F  I  Y  T  S  P  E  D  F  T  R  N  C  *  A  F  S  W  I  G  Q  C  Y  *  V  L  A  *  P  S  K  R  Q  W  R  I  L  P  S  S  F  Q  I  L  N  M :   *  S  C  I  T  G  *  G  I  S  C  V  L  V  I  Y  W  K  F  G  *  K  S  *  S  G  F  *  *  E  C  W  R  T  *  K  I  *  *  R  N  Q  H  D  G  C  K  S  S  L  *  E  Q  S  I  C  *  N  Y  C  Q  P  S  L  E   : D  G  S  G  G  I  I  *  L  L  E  * :   L  S  R  E  S  Y  N  T  S  I  R  A  S  R  *  K  R  G  P  *  A  D  Y  C  C  I  *  R  N  *  I  L  Q  F  *  *  L  D  F  *  L  *  S  L  L  V  *  H  S  R  H  G  Q  S  P  C  R  I  Y  E  S  S  R  L  T  K  E  P  G  M  A  Q  K  Y  C  T  N  *  Y  *  *  Y  *  S  A  T  S  S  L  L  F  P  K  K  I  A  Q  T  T  S  G  E  K  *  K  G  K  V  F  S  Y  R  S  Q  L  R  W  S  T  C  N  F  V  S  S  N  I  S  I  P  *  G  I  L  A  V  E  K  I  R  G  H  L  H  I  W  S  T  K  S  W  R  *  K  F  Y  *  I  Y  E  W  T  I  N  K  T  *  G  S  I  L  Q  S  C  V  Q  Q  *  H  G  T  K  I  A  I  *  Q  F  Y  F  L  V  Q  A  L  W  N  L  H  L  L  Q  *  P  L  Q  R  K   : N  F  S  *  R  T  R  Q  E  W  V  V  S  V  N  V  Y  T  K  D  V  K  R  S  L  G  A  D  Q  K  L  Y  S  T  M  C  T  R  T  K  V  S  G  R  R  A  S  F  M  H  E  S  D  W  L  A  I  P  R  H  A  C  S  L  S  S  G  L  C  *  L  Y  Q  A  W  I  I  *  S  F  H  *  R  R  C  K  V  S  K  D  W  H  S  T  S  I  I  I  K  *  L  T  T  Q  C  V  L  F  R  I  S  Y  P  T  Y  *  F  F  P  A  P  M  Y  Y  *  I  F  N  *  F  E  A  *  I  E  S  L  E  N  K  V  K  N  S  F  Y  P  M  E  </second_frame>
            <third_frame>   N  T  S  W  N  A  L  L  F  Y  K  *  I  N  K  L  L  Y  Q  I  I  I  I  D  L  Q  Y  M  A  S  N  S  C  N  K  S  F  C  S  N  Y  M  L  L  K  P  E  E  C  S  V  L  D  L  A  K  L  L  L  S  G  K  K  L  G  Q  K  D  F  I  D  C  P  N  E  E  M  T  K  E  P  L  S  R  R  W  V  I  F  L  S  I  L  V  Q  K  I  L  L  A  T  A  K  P  L  A  G  L  G  N  A  I  E  Y  W  L  N  L  Q  N  V  N  G  G  F  F  R  L  L  F  K  S  L  I   : C  K  A  V  S  P  D  K  E  S  A  A  Y  L  S  F  I  G  N  L  D  K  R  V  D  L  D  F  S  K  N  V  G  G  R  R  R  Y  D  E  G  I  S  M  M  A  A  K  A  A  Y  E  N  K  A  Y  V  E  T  T  V  N  H  H  W  K  :  M  D  L  V  G  S  F  D  F  W  N   : D  Y  Q  E  K  A  T  T  Q  A  F  V  L  Q  D  K  S  V  D  P  E  L  I  I  V  A  F  R  G  T  E  F  F  N  S  D  D  W  I  S  D  F  N  L  S  W  Y  D  I  P  G  M  G  K  V  H  A  G  F  M  K  A  L  G  L  Q  K  S  L  G  W  P  K  N  I  V  Q  T  D  T  N  N  I  N  Q  P  P  P  A  Y  Y  F  L  R  K  L  L  K  Q  L  L  E  K  N  E  K  A  R  F  L  V  T  G  H  S  L  G  G  A  L  A  I  L  F  P  A  I  L  A  F  H  E  E  S  W  L  L  K  R  L  G  G  I  Y  T  F  G  Q  P  R  V  G  D  E  S  F  I  E  Y  M  N  G  Q  L  T  K  H  E  V  P  Y  Y  R  V  V  Y  S  N  D  M  V  P  R  L  P  F  D  N  S  T  F  L  F  K  H  F  G  T  C  I  Y  Y  N  S  L  Y  R  E  K  :  I  L  V  E  E  P  D  K  N  G  S  F  L  L  M  F  I  P  K  M  L  N  A  A  W  E  L  I  R  S  C  I  L  P  C  V  H  G  R  K  Y  Q  E  G  G  L  L  L  C  M  R  V  I  G  L  L  F  P  G  M  P  A  H  C  P  Q  D  Y  V  N  S  T  R  L  G  S  S  D  H  S  T  E  D  V  A  K  Y  Q  K  I  G  I  V  P  A  *  L  *  N  N  *  L  P  S  V  C  F  L  E  F  L  I  L  H  I  S  F  S  L  H  Q  C  I  I  R  Y  L  I  D  L  K  L  E  S  S  P  W  R  T  K  *  K  I  H  F  I  Q  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22094" stop="22460"/>
                    <exon start="22540" stop="22736"/>
                    <exon start="23283" stop="23316"/>
                    <exon start="25212" stop="25837"/>
                    <exon start="26020" stop="26307"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INKLLYQIIIIDLQYMASNSCNKSFCSNYMLLKPEECSVLDLAKLLLSGKKLGQKDFIDCPNEEMTKEPLSRRWVIFLSILVQKILLATAKPLAGLGNAIEYWLNLQNVNGGFFRLLFKSLICKAVSPDKESAAYLSFIGNLDKRVDLDFSKNVGGRRRYDEGISMMAAKAAYENKAYVETTVNHHWKMDLVGSFDFWNDYQEKATTQAFVLQDKSVDPELIIVAFRGTEFFNSDDWISDFNLSWYDIPGMGKVHAGFMKALGLQKSLGWPKNIVQTDTNNINQPPPAYYFLRKLLKQLLEKNEKARFLVTGHSLGGALAILFPAILAFHEESWLLKRLGGIYTFGQPRVGDESFIEYMNGQLTKHEVPYYRVVYSNDMVPRLPFDNSTFLFKHFGTCIYYNSLYREKILVEEPDKNGSFLLMFIPKMLNAAWELIRSCILPCVHGRKYQEGGLLLCMRVIGLLFPGMPAHCPQDYVNSTRLGSSDHSTEDVAKYQKIGIVPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31393" PGL_stop="38669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31414" e_stop="31805"/>
            <exon e_start="31888" e_stop="31977"/>
            <exon e_start="33895" e_stop="33960"/>
            <exon e_start="34139" e_stop="34204"/>
            <exon e_start="34473" e_stop="34558"/>
            <exon e_start="34653" e_stop="34698"/>
            <exon e_start="34805" e_stop="34859"/>
            <exon e_start="36086" e_stop="36162"/>
            <exon e_start="36279" e_stop="36420"/>
            <exon e_start="36631" e_stop="36791"/>
            <exon e_start="36896" e_stop="37000"/>
            <exon e_start="37554" e_stop="37706"/>
            <exon e_start="38297" e_stop="38669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="0.952"/>
          <exon-intron don_prob="0.902" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="31414" e_stop="31805" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31888" e_stop="31977" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.872">
            <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33895" e_stop="33960" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34139" e_stop="34204" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34473" e_stop="34558" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34653" e_stop="34698" e_length="46"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34805" e_stop="34859" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36086" e_stop="36162" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36279" e_stop="36420" e_length="142"/>
          </exon>
          <intron i_serial="9" don_prob="0.585" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36421" i_stop="36630" i_length="210"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36631" e_stop="36791" e_length="161"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="37000" e_length="105"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37554" e_stop="37706" e_length="153"/>
          </exon>
          <intron i_serial="12" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590"/>
          </intron>
          <exon e_serial="13" e_score="0.933">
            <gDNA_exon_boundary e_start="38297" e_stop="38669" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31414" stop="31805"/>
              <exon start="31888" stop="31919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31763" stop="31805"/>
              <exon start="31888" stop="31977"/>
              <exon start="33895" stop="33960"/>
              <exon start="34139" stop="34204"/>
              <exon start="34473" stop="34558"/>
              <exon start="34653" stop="34698"/>
              <exon start="34805" stop="34859"/>
              <exon start="36086" stop="36162"/>
              <exon start="36279" stop="36420"/>
              <exon start="36631" stop="36785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36662" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36716" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37571" stop="37706"/>
              <exon start="38297" stop="38638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37637" stop="37706"/>
              <exon start="38297" stop="38535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAGGTCAGTGGAGCGCGTAAATCTAATTTAGTACTCGTTGTGATTTTAATTTCTTTGGTATCCGAAGATCTTAGAGAAATTGGTGAGTTTGTTCTGAAATATGATGATGATGATGATATTTGTGTGTGAGAAAGAGGTGTGTGTCTGTTACCTGCAGGAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTG : GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAG : GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG : AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG : GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG : TTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAG : GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG : AATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG : GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAA : GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAG : GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG : GTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT : TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGAATGGGTGCTAATTCCATATCCAGGAGTAGAAACATAGTTGGTAGTGAA</gDNA_template>
            <first_frame> G  V  *  R  S  *  A  A  R  G  R  A  S  G  A  E  *  E  S  E  L  G  F  *  *  S  E  S  R  R  S  V  E  R  V  N  L  I  *  Y  S  L  *  F  *  F  L  W  Y  P  K  I  L  E  K  L  V  S  L  F  *  N  M  M  M  M  M  I  F  V  C  E  K  E  V  C  V  C  Y  L  Q  E  E  S  S  C  V  S  D  S  F  I  E  R  G  V  V  R  S  R  E  R  V  E  C  I  S  Y  D  F  H  S  P  L  I  N  L  S  D  K  F  S  L  P  C  R  R  R  S  L  W :   F  *  A  S  H  G  T  W  I  Q  K  V  *  G  N  I  *  S  N  M  E  I  *  R  I  V  L  *  *  R :   N  V  L  L  V  V  L  V  D  S  A  M  S  H  L  L  Q  L  R  M  L  R :   M  H  C  L  R  S  T  F  L  E  T  E  C  *  K  *  K  W  R  H  R  R :   R  R  *  G  L  L  Q  R  K  *  P  G  F  S  L  L  G  F  L  R  L  C  L  K  L  L  S  E   : V  I  L  R  S  T  V  K  *  Q  I  C  T  C  Q  R :   I  H  L  P  R  D  I  V  E  L  G  L  L  L  L  Q  M  L  :  N  Q  L  M  I  *  *  V  T  P  M  N  W  E  V  P  Q  L  W  W  T  E  Q  H  P  R :   K  K  I  S  D  L  L  V  G  C  L  R  V  E  E  D  M  V  H  I  M  H  I  *  V  Q  L  L  D  M  V  R  L  V  L  L  P  Y  M  I  I  L  V  L  C  M  E  :  E  V  E  V  E  V  E  V  E  V  E  D  F  H  L  V  V  A  W  A  R  R  S  L  L  V  D  Y  L  K  R  Q  Q  L  K  I  F  A  S  I  L  V  D  L  A  V  F  *  M  C  M  S  Q  R :   I  Q  E  D  Q  G  I  E  G  L  V  L  L  H  L  L  M  M  V  L  Q  I  V  F  L  E  G  L  M  R  Y  V  D  I  R :   L  Q  L  I  L  L  L  L  L  M  M  L  V  Q  V  T  I  T  *  W  I  L  L  L  L  L  L  K  H  M  G  D  M  V  V  L  C  V  L  M  E  G  C  M  G  A  *  I  M  M  I :   G  V  T  A  W  V  V  G  D  L  Q  D  Q  I  *  D  T  G  P  T  S  W  P  G  W  I  G  G  G  Q  D  Q  I  *  D  S  G  P  S  S  F  V  L  Q  E  V  R  G  C  L  N  F  Q  W  V  T  T  I  D  M  S  Y  L  Y  Q  F  I  I  R  W  T  S  *  Y  M  C  Y  *  Y  L  S  N  *  K  S  S  A  D  G  L  C  N  S  L  H  T  *  S  F  V  L  N  V  L  K  K  Q  R  M  G  A  N  S  I  S  R  S  R  N  I  V  G  S  E </first_frame>
            <second_frame>  G  F  E  G  A  E  R  R  E  E  E  R  A  E  R  S  E  R  A  N  *  G  F  D  N  R  N  Q  E  G  Q  W  S  A  *  I  *  F  S  T  R  C  D  F  N  F  F  G  I  R  R  S  *  R  N  W  *  V  C  S  E  I  *  *  *  *  *  Y  L  C  V  R  K  R  C  V  S  V  T  C  R  K  N  R  L  V  *  A  I  R  L  *  R  E  V  W  *  D  R  E  S  E  L  S  V  Y  P  T  I  S  T  L  R  *  S  I  C  Q  T  S  F  R  Y  H  V  G  E  E  A  C   : G  F  R  H  P  M  G  R  G  Y  R  R  S  K  G  I  Y  D  Q  I  W  R  F  R  G  L  Y  C  D  E   : G  T  C  Y  W  S  F  S  W  I  R  L  C  H  I  C  Y  S  *  G  C  *   : E  C  I  V  *  G  A  L  S  W  K  Q  N  A  R  S  E  S  G  D  T  E   : G  G  D  E  G  S  C  K  E  S  D  Q  D  F  R  C  *  D  S  S  V  C  V  *  S  Y  F  Q  R  :  L  F  *  E  V  R  *  N  N  R  S  V  H  A  K   : G  S  I  Y  Q  G  T  S  W  N  W  V  Y  Y  F  C  K  C  * :   I  S  *  *  S  D  E  *  H  P  *  T  G  R  F  H  N  C  G  G  P  S  N  T  Q   : G  R  R  F  Q  T  C  *  S  D  V  S  E  W  R  R  I  W  C  I  *  C  I  Y  E  C  N  Y  *  I  W  C  A  W  C  S  Y  L  I  *  S  S  *  F  Y  V  W  K :   R  W  R  W  R  W  R  W  R  W  R  I  S  I  S  W  W  L  G  P  E  D  L  C  W  S  T  T  S  R  G  N  N  *  R  S  S  P  V  F  W  *  I  W  P  C  F  R  C  V  C  P  K   : G  S  K  K  T  R  A  *  R  V  W  F  C  Y  I  C  *  *  W  C  C  R  S  C  F  S  K  A  S  *  D  M  W  T  S   : G  C  N  *  F  C  Y  S  S  *  *  C  W  S  K  *  Q  L  H  D  G  S  S  S  S  C  S  *  S  I  W  G  I  W  W  S  Y  A  Y  L  W  K  D  V  W  G  P  R  L  *  *   : L  G  L  R  P  G  W  W  E  T  F  K  I  R  Y  E  I  Q  A  L  L  A  G  L  V  G  *  E  A  V  K  I  R  Y  E  I  Q  A  L  V  A  L  C  C  R  R  S  E  A  V  *  I  S  N  G  *  Q  Q  *  I  C  H  I  Y  I  S  L  L  L  G  G  H  H  N  T  C  A  T  N  T  *  V  I  E  K  A  V  L  M  D  C  A  I  H  F  I  L  D  P  L  Y  *  M  Y  *  R  N  K  E  W  V  L  I  P  Y  P  G  V  E  T  *  L  V  V   </second_frame>
            <third_frame>   G  L  K  E  L  S  G  A  R  K  S  E  R  S  G  V  R  E  R  I  R  V  L  I  I  G  I  K  K  V  S  G  A  R  K  S  N  L  V  L  V  V  I  L  I  S  L  V  S  E  D  L  R  E  I  G  E  F  V  L  K  Y  D  D  D  D  D  I  C  V  *  E  R  G  V  C  L  L  P  A  G  R  I  V  L  C  E  R  F  V  Y  R  E  R  C  G  E  I  A  R  A  S  *  V  Y  I  L  R  F  P  L  S  A  N  Q  F  V  R  Q  V  F  V  T  M  S  E  K  K  L  V  :  V  L  G  I  P  W  D  V  D  T  E  G  L  R  E  Y  M  I  K  Y  G  D  L  E  D  C  I  V  M  K  :  E  R  A  T  G  R  S  R  G  F  G  Y  V  T  F  A  T  V  E  D  A  K  :  N  A  L  S  K  E  H  F  L  G  N  R  M  L  E  V  K  V  A  T  P  K  :  E  E  M  R  A  P  A  K  K  V  T  R  I  F  V  A  R  I  P  P  S  V  S  E  A  T  F  R  G :   Y  F  E  K  Y  G  E  I  T  D  L  Y  M  P  K  :  D  P  S  T  K  G  H  R  G  I  G  F  I  T  F  A  N  A   : E  S  V  D  D  L  M  S  D  T  H  E  L  G  G  S  T  I  V  V  D  R  A  T  P  K  :  E  E  D  F  R  P  V  S  R  M  S  Q  S  G  G  G  Y  G  A  Y  N  A  Y  M  S  A  T  T  R  Y  G  A  L  G  A  P  T  L  Y  D  H  P  S  S  M  Y  G   : R  G  G  G  G  G  G  G  G  G  G  G  F  P  S  R  G  G  L  G  Q  K  I  F  V  G  R  L  P  Q  E  A  T  T  E  D  L  R  Q  Y  F  G  R  F  G  R  V  L  D  V  Y  V  P  K  :  D  P  R  R  P  G  H  R  G  F  G  F  V  T  F  A  D  D  G  V  A  D  R  V  S  R  R  P  H  E  I  C  G  H  Q  :  V  A  I  D  S  A  T  P  L  D  D  A  G  P  S  N  N  Y  M  M  D  P  P  P  P  A  P  E  A  Y  G  G  Y  G  G  P  M  R  T  Y  G  R  M  Y  G  G  L  D  Y  D  D  :  W  G  Y  G  L  G  G  G  R  P  S  R  S  D  M  R  Y  R  P  Y  *  L  A  W  L  D  R  R  R  S  R  S  D  M  R  F  R  P  *  *  L  C  V  A  G  G  Q  R  L  S  E  F  P  M  G  D  N  N  R  Y  V  I  F  I  S  V  Y  Y  *  V  D  I  I  I  H  V  L  L  I  L  K  *  L  K  K  Q  C  *  W  I  V  Q  F  T  S  Y  L  I  L  C  I  K  C  I  E  E  T  K  N  G  C  *  F  H  I  Q  E  *  K  H  S  W  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31725" stop="31805"/>
                    <exon start="31888" stop="31977"/>
                    <exon start="33895" stop="33960"/>
                    <exon start="34139" stop="34204"/>
                    <exon start="34473" stop="34558"/>
                    <exon start="34653" stop="34698"/>
                    <exon start="34805" stop="34859"/>
                    <exon start="36086" stop="36162"/>
                    <exon start="36279" stop="36420"/>
                    <exon start="36631" stop="36791"/>
                    <exon start="36896" stop="37000"/>
                    <exon start="37554" stop="37706"/>
                    <exon start="38297" stop="38359"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYILRFPLSANQFVRQVFVTMSEKKLVVLGIPWDVDTEGLREYMIKYGDLEDCIVMKERATGRSRGFGYVTFATVEDAKNALSKEHFLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVSEATFRGYFEKYGEITDLYMPKDPSTKGHRGIGFITFANAESVDDLMSDTHELGGSTIVVDRATPKEEDFRPVSRMSQSGGGYGAYNAYMSATTRYGALGAPTLYDHPSSMYGRGGGGGGGGGGGFPSRGGLGQKIFVGRLPQEATTEDLRQYFGRFGRVLDVYVPKDPRRPGHRGFGFVTFADDGVADRVSRRPHEICGHQVAIDSATPLDDAGPSNNYMMDPPPPAPEAYGGYGGPMRTYGRMYGGLDYDDWGYGLGGGRPSRSDMRYRPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31416" stop="31628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLKELSGARKSERSGVRERIRVLIIGIKKVSGARKSNLVLVVILISLVSEDLREIGEFVLKYDDDDDICV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31393" e_stop="31502"/>
            <exon e_start="31657" e_stop="31805"/>
            <exon e_start="31888" e_stop="31977"/>
            <exon e_start="33895" e_stop="33960"/>
            <exon e_start="34139" e_stop="34204"/>
            <exon e_start="34473" e_stop="34558"/>
            <exon e_start="34653" e_stop="34698"/>
            <exon e_start="34805" e_stop="34859"/>
            <exon e_start="36086" e_stop="36162"/>
            <exon e_start="36279" e_stop="36420"/>
            <exon e_start="36631" e_stop="36791"/>
            <exon e_start="36896" e_stop="37000"/>
            <exon e_start="37554" e_stop="37706"/>
            <exon e_start="38297" e_stop="38669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.585" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31393" e_stop="31502" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.960">
            <gDNA_intron_boundary i_start="31503" i_stop="31656" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31657" e_stop="31805" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31806" i_stop="31887" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31888" e_stop="31977" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.872">
            <gDNA_intron_boundary i_start="31978" i_stop="33894" i_length="1917"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33895" e_stop="33960" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33961" i_stop="34138" i_length="178"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34139" e_stop="34204" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34205" i_stop="34472" i_length="268"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34473" e_stop="34558" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="0.885" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34559" i_stop="34652" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34653" e_stop="34698" e_length="46"/>
          </exon>
          <intron i_serial="7" don_prob="0.899" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34699" i_stop="34804" i_length="106"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34805" e_stop="34859" e_length="55"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34860" i_stop="36085" i_length="1226"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="36086" e_stop="36162" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36279" e_stop="36420" e_length="142"/>
          </exon>
          <intron i_serial="10" don_prob="0.585" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36421" i_stop="36630" i_length="210"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="36631" e_stop="36791" e_length="161"/>
          </exon>
          <intron i_serial="11" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="37000" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="37554" e_stop="37706" e_length="153"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590"/>
          </intron>
          <exon e_serial="14" e_score="0.933">
            <gDNA_exon_boundary e_start="38297" e_stop="38669" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31393" stop="31502"/>
              <exon start="31657" stop="31805"/>
              <exon start="31888" stop="31977"/>
              <exon start="33895" stop="33960"/>
              <exon start="34139" stop="34204"/>
              <exon start="34473" stop="34558"/>
              <exon start="34653" stop="34698"/>
              <exon start="34805" stop="34859"/>
              <exon start="36086" stop="36162"/>
              <exon start="36279" stop="36420"/>
              <exon start="36631" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31763" stop="31805"/>
              <exon start="31888" stop="31977"/>
              <exon start="33895" stop="33960"/>
              <exon start="34139" stop="34204"/>
              <exon start="34473" stop="34558"/>
              <exon start="34653" stop="34698"/>
              <exon start="34805" stop="34859"/>
              <exon start="36086" stop="36162"/>
              <exon start="36279" stop="36420"/>
              <exon start="36631" stop="36785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36662" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36716" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37571" stop="37706"/>
              <exon start="38297" stop="38638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37637" stop="37706"/>
              <exon start="38297" stop="38535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGGATAAGAGCAGTGGCTTGGGGTTTGAAGGAGCTGAGCGGCGCGAGGAAGAGCGAGCGGAGCGGAGTGAGAGAGCGAATTAGGGTTTTGATAATCGGAATCAAGAAG : GAAGAATCGTCTTGTGTGAGCGATTCGTTTATAGAGAGAGGTGTGGTGAGATCGCGAGAGCGAGTTGAGTGTATATCCTACGATTTCCACTCTCCGCTAATCAATTTGTCAGACAAGTTTTCGTTACCATGTCGGAGAAGAAGCTTGTG : GTTTTAGGCATCCCATGGGACGTGGATACAGAAGGTCTAAGGGAATATATGATCAAATATGGAGATTTAGAGGATTGTATTGTGATGAAG : GAACGTGCTACTGGTCGTTCTCGTGGATTCGGCTATGTCACATTTGCTACAGTTGAGGATGCTAAG : AATGCATTGTCTAAGGAGCACTTTCTTGGAAACAGAATGCTAGAAGTGAAAGTGGCGACACCGAAG : GAGGAGATGAGGGCTCCTGCAAAGAAAGTGACCAGGATTTTCGTTGCTAGGATTCCTCCGTCTGTGTCTGAAGCTACTTTCAGAGG : TTATTTTGAGAAGTACGGTGAAATAACAGATCTGTACATGCCAAAG : GATCCATCTACCAAGGGACATCGTGGAATTGGGTTTATTACTTTTGCAAATGCTG : AATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG : GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAA : GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAG : GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG : GTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT : TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGAATGGGTGCTAATTCCATATCCAGGAGTAGAAACATAGTTGGTAGTGAA</gDNA_template>
            <first_frame> D  G  *  E  Q  W  L  G  V  *  R  S  *  A  A  R  G  R  A  S  G  A  E  *  E  S  E  L  G  F  *  *  S  E  S  R  R :   K  N  R  L  V  *  A  I  R  L  *  R  E  V  W  *  D  R  E  S  E  L  S  V  Y  P  T  I  S  T  L  R  *  S  I  C  Q  T  S  F  R  Y  H  V  G  E  E  A  C   : G  F  R  H  P  M  G  R  G  Y  R  R  S  K  G  I  Y  D  Q  I  W  R  F  R  G  L  Y  C  D  E   : G  T  C  Y  W  S  F  S  W  I  R  L  C  H  I  C  Y  S  *  G  C  *   : E  C  I  V  *  G  A  L  S  W  K  Q  N  A  R  S  E  S  G  D  T  E   : G  G  D  E  G  S  C  K  E  S  D  Q  D  F  R  C  *  D  S  S  V  C  V  *  S  Y  F  Q  R  :  L  F  *  E  V  R  *  N  N  R  S  V  H  A  K   : G  S  I  Y  Q  G  T  S  W  N  W  V  Y  Y  F  C  K  C  * :   I  S  *  *  S  D  E  *  H  P  *  T  G  R  F  H  N  C  G  G  P  S  N  T  Q   : G  R  R  F  Q  T  C  *  S  D  V  S  E  W  R  R  I  W  C  I  *  C  I  Y  E  C  N  Y  *  I  W  C  A  W  C  S  Y  L  I  *  S  S  *  F  Y  V  W  K :   R  W  R  W  R  W  R  W  R  W  R  I  S  I  S  W  W  L  G  P  E  D  L  C  W  S  T  T  S  R  G  N  N  *  R  S  S  P  V  F  W  *  I  W  P  C  F  R  C  V  C  P  K   : G  S  K  K  T  R  A  *  R  V  W  F  C  Y  I  C  *  *  W  C  C  R  S  C  F  S  K  A  S  *  D  M  W  T  S   : G  C  N  *  F  C  Y  S  S  *  *  C  W  S  K  *  Q  L  H  D  G  S  S  S  S  C  S  *  S  I  W  G  I  W  W  S  Y  A  Y  L  W  K  D  V  W  G  P  R  L  *  *   : L  G  L  R  P  G  W  W  E  T  F  K  I  R  Y  E  I  Q  A  L  L  A  G  L  V  G  *  E  A  V  K  I  R  Y  E  I  Q  A  L  V  A  L  C  C  R  R  S  E  A  V  *  I  S  N  G  *  Q  Q  *  I  C  H  I  Y  I  S  L  L  L  G  G  H  H  N  T  C  A  T  N  T  *  V  I  E  K  A  V  L  M  D  C  A  I  H  F  I  L  D  P  L  Y  *  M  Y  *  R  N  K  E  W  V  L  I  P  Y  P  G  V  E  T  *  L  V  V   </first_frame>
            <second_frame>  T  D  K  S  S  G  L  G  F  E  G  A  E  R  R  E  E  E  R  A  E  R  S  E  R  A  N  *  G  F  D  N  R  N  Q  E   : G  R  I  V  L  C  E  R  F  V  Y  R  E  R  C  G  E  I  A  R  A  S  *  V  Y  I  L  R  F  P  L  S  A  N  Q  F  V  R  Q  V  F  V  T  M  S  E  K  K  L  V  :  V  L  G  I  P  W  D  V  D  T  E  G  L  R  E  Y  M  I  K  Y  G  D  L  E  D  C  I  V  M  K  :  E  R  A  T  G  R  S  R  G  F  G  Y  V  T  F  A  T  V  E  D  A  K  :  N  A  L  S  K  E  H  F  L  G  N  R  M  L  E  V  K  V  A  T  P  K  :  E  E  M  R  A  P  A  K  K  V  T  R  I  F  V  A  R  I  P  P  S  V  S  E  A  T  F  R  G :   Y  F  E  K  Y  G  E  I  T  D  L  Y  M  P  K  :  D  P  S  T  K  G  H  R  G  I  G  F  I  T  F  A  N  A   : E  S  V  D  D  L  M  S  D  T  H  E  L  G  G  S  T  I  V  V  D  R  A  T  P  K  :  E  E  D  F  R  P  V  S  R  M  S  Q  S  G  G  G  Y  G  A  Y  N  A  Y  M  S  A  T  T  R  Y  G  A  L  G  A  P  T  L  Y  D  H  P  S  S  M  Y  G   : R  G  G  G  G  G  G  G  G  G  G  G  F  P  S  R  G  G  L  G  Q  K  I  F  V  G  R  L  P  Q  E  A  T  T  E  D  L  R  Q  Y  F  G  R  F  G  R  V  L  D  V  Y  V  P  K  :  D  P  R  R  P  G  H  R  G  F  G  F  V  T  F  A  D  D  G  V  A  D  R  V  S  R  R  P  H  E  I  C  G  H  Q  :  V  A  I  D  S  A  T  P  L  D  D  A  G  P  S  N  N  Y  M  M  D  P  P  P  P  A  P  E  A  Y  G  G  Y  G  G  P  M  R  T  Y  G  R  M  Y  G  G  L  D  Y  D  D  :  W  G  Y  G  L  G  G  G  R  P  S  R  S  D  M  R  Y  R  P  Y  *  L  A  W  L  D  R  R  R  S  R  S  D  M  R  F  R  P  *  *  L  C  V  A  G  G  Q  R  L  S  E  F  P  M  G  D  N  N  R  Y  V  I  F  I  S  V  Y  Y  *  V  D  I  I  I  H  V  L  L  I  L  K  *  L  K  K  Q  C  *  W  I  V  Q  F  T  S  Y  L  I  L  C  I  K  C  I  E  E  T  K  N  G  C  *  F  H  I  Q  E  *  K  H  S  W  *  *  </second_frame>
            <third_frame>   R  I  R  A  V  A  W  G  L  K  E  L  S  G  A  R  K  S  E  R  S  G  V  R  E  R  I  R  V  L  I  I  G  I  K  K  :  E  E  S  S  C  V  S  D  S  F  I  E  R  G  V  V  R  S  R  E  R  V  E  C  I  S  Y  D  F  H  S  P  L  I  N  L  S  D  K  F  S  L  P  C  R  R  R  S  L  W :   F  *  A  S  H  G  T  W  I  Q  K  V  *  G  N  I  *  S  N  M  E  I  *  R  I  V  L  *  *  R :   N  V  L  L  V  V  L  V  D  S  A  M  S  H  L  L  Q  L  R  M  L  R :   M  H  C  L  R  S  T  F  L  E  T  E  C  *  K  *  K  W  R  H  R  R :   R  R  *  G  L  L  Q  R  K  *  P  G  F  S  L  L  G  F  L  R  L  C  L  K  L  L  S  E   : V  I  L  R  S  T  V  K  *  Q  I  C  T  C  Q  R :   I  H  L  P  R  D  I  V  E  L  G  L  L  L  L  Q  M  L  :  N  Q  L  M  I  *  *  V  T  P  M  N  W  E  V  P  Q  L  W  W  T  E  Q  H  P  R :   K  K  I  S  D  L  L  V  G  C  L  R  V  E  E  D  M  V  H  I  M  H  I  *  V  Q  L  L  D  M  V  R  L  V  L  L  P  Y  M  I  I  L  V  L  C  M  E  :  E  V  E  V  E  V  E  V  E  V  E  D  F  H  L  V  V  A  W  A  R  R  S  L  L  V  D  Y  L  K  R  Q  Q  L  K  I  F  A  S  I  L  V  D  L  A  V  F  *  M  C  M  S  Q  R :   I  Q  E  D  Q  G  I  E  G  L  V  L  L  H  L  L  M  M  V  L  Q  I  V  F  L  E  G  L  M  R  Y  V  D  I  R :   L  Q  L  I  L  L  L  L  L  M  M  L  V  Q  V  T  I  T  *  W  I  L  L  L  L  L  L  K  H  M  G  D  M  V  V  L  C  V  L  M  E  G  C  M  G  A  *  I  M  M  I :   G  V  T  A  W  V  V  G  D  L  Q  D  Q  I  *  D  T  G  P  T  S  W  P  G  W  I  G  G  G  Q  D  Q  I  *  D  S  G  P  S  S  F  V  L  Q  E  V  R  G  C  L  N  F  Q  W  V  T  T  I  D  M  S  Y  L  Y  Q  F  I  I  R  W  T  S  *  Y  M  C  Y  *  Y  L  S  N  *  K  S  S  A  D  G  L  C  N  S  L  H  T  *  S  F  V  L  N  V  L  K  K  Q  R  M  G  A  N  S  I  S  R  S  R  N  I  V  G  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31725" stop="31805"/>
                    <exon start="31888" stop="31977"/>
                    <exon start="33895" stop="33960"/>
                    <exon start="34139" stop="34204"/>
                    <exon start="34473" stop="34558"/>
                    <exon start="34653" stop="34698"/>
                    <exon start="34805" stop="34859"/>
                    <exon start="36086" stop="36162"/>
                    <exon start="36279" stop="36420"/>
                    <exon start="36631" stop="36791"/>
                    <exon start="36896" stop="37000"/>
                    <exon start="37554" stop="37706"/>
                    <exon start="38297" stop="38359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYILRFPLSANQFVRQVFVTMSEKKLVVLGIPWDVDTEGLREYMIKYGDLEDCIVMKERATGRSRGFGYVTFATVEDAKNALSKEHFLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVSEATFRGYFEKYGEITDLYMPKDPSTKGHRGIGFITFANAESVDDLMSDTHELGGSTIVVDRATPKEEDFRPVSRMSQSGGGYGAYNAYMSATTRYGALGAPTLYDHPSSMYGRGGGGGGGGGGGFPSRGGLGQKIFVGRLPQEATTEDLRQYFGRFGRVLDVYVPKDPRRPGHRGFGFVTFADDGVADRVSRRPHEICGHQVAIDSATPLDDAGPSNNYMMDPPPPAPEAYGGYGGPMRTYGRMYGGLDYDDWGYGLGGGRPSRSDMRYRPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36082" e_stop="36162"/>
            <exon e_start="36279" e_stop="36427"/>
            <exon e_start="36631" e_stop="36791"/>
            <exon e_start="36896" e_stop="37000"/>
            <exon e_start="37554" e_stop="37706"/>
            <exon e_start="38297" e_stop="38669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.973"/>
          <exon-intron don_prob="0.982" acc_prob="0.993" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="36082" e_stop="36162" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="36163" i_stop="36278" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="36279" e_stop="36427" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36428" i_stop="36630" i_length="203"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="36631" e_stop="36791" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36792" i_stop="36895" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36896" e_stop="37000" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37001" i_stop="37553" i_length="553"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37554" e_stop="37706" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37707" i_stop="38296" i_length="590"/>
          </intron>
          <exon e_serial="6" e_score="0.933">
            <gDNA_exon_boundary e_start="38297" e_stop="38669" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36082" stop="36162"/>
              <exon start="36279" stop="36427"/>
              <exon start="36631" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36662" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36716" stop="36791"/>
              <exon start="36896" stop="37000"/>
              <exon start="37554" stop="37706"/>
              <exon start="38297" stop="38669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37571" stop="37706"/>
              <exon start="38297" stop="38638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37637" stop="37706"/>
              <exon start="38297" stop="38535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGAATCAGTTGATGATCTGATGAGTGACACCCATGAACTGGGAGGTTCCACAATTGTGGTGGACCGAGCAACACCCAAG : GAAGAAGATTTCAGACCTGTTAGTCGGATGTCTCAGAGTGGAGGAGGATATGGTGCATATAATGCATATATGAGTGCAACTACTAGATATGGTGCGCTTGGTGCTCCTACCTTATATGATCATCCTAGTTCTATGTATGGAAGTAAGTA : GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGATTTCCATCTCGTGGTGGCTTGGGCCAGAAGATCTTTGTTGGTCGACTACCTCAAGAGGCAACAACTGAAGATCTTCGCCAGTATTTTGGTAGATTTGGCCGTGTTTTAGATGTGTATGTCCCAAAG : GATCCAAGAAGACCAGGGCATAGAGGGTTTGGTTTTGTTACATTTGCTGATGATGGTGTTGCAGATCGTGTTTCTCGAAGGCCTCATGAGATATGTGGACATCAG : GTTGCAATTGATTCTGCTACTCCTCTTGATGATGCTGGTCCAAGTAACAATTACATGATGGATCCTCCTCCTCCTGCTCCTGAAGCATATGGGGGATATGGTGGTCCTATGCGTACTTATGGAAGGATGTATGGGGGCCTAGATTATGATGAT : TGGGGTTACGGCCTGGGTGGTGGGAGACCTTCAAGATCAGATATGAGATACAGGCCCTACTAGCTGGCCTGGTTGGATAGGAGGCGGTCAAGATCAGATATGAGATTCAGGCCCTAGTAGCTTTGTGTTGCAGGAGGTCAGAGGCTGTCTGAATTTCCAATGGGTGACAACAATAGATATGTCATATTTATATCAGTTTATTATTAGGTGGACATCATAATACATGTGCTACTAATACTTAAGTAATTGAAAAAGCAGTGCTGATGGATTGTGCAATTCACTTCATACTTGATCCTTTGTATTAAATGTATTGAAGAAACAAAGAATGGGTGCTAATTCCATATCCAGGAGTAGAAACATAGTTGGTAGTGAA</gDNA_template>
            <first_frame> P  E  S  V  D  D  L  M  S  D  T  H  E  L  G  G  S  T  I  V  V  D  R  A  T  P  K  :  E  E  D  F  R  P  V  S  R  M  S  Q  S  G  G  G  Y  G  A  Y  N  A  Y  M  S  A  T  T  R  Y  G  A  L  G  A  P  T  L  Y  D  H  P  S  S  M  Y  G  S  K  * :   R  W  R  W  R  W  R  W  R  W  R  I  S  I  S  W  W  L  G  P  E  D  L  C  W  S  T  T  S  R  G  N  N  *  R  S  S  P  V  F  W  *  I  W  P  C  F  R  C  V  C  P  K   : G  S  K  K  T  R  A  *  R  V  W  F  C  Y  I  C  *  *  W  C  C  R  S  C  F  S  K  A  S  *  D  M  W  T  S   : G  C  N  *  F  C  Y  S  S  *  *  C  W  S  K  *  Q  L  H  D  G  S  S  S  S  C  S  *  S  I  W  G  I  W  W  S  Y  A  Y  L  W  K  D  V  W  G  P  R  L  *  *   : L  G  L  R  P  G  W  W  E  T  F  K  I  R  Y  E  I  Q  A  L  L  A  G  L  V  G  *  E  A  V  K  I  R  Y  E  I  Q  A  L  V  A  L  C  C  R  R  S  E  A  V  *  I  S  N  G  *  Q  Q  *  I  C  H  I  Y  I  S  L  L  L  G  G  H  H  N  T  C  A  T  N  T  *  V  I  E  K  A  V  L  M  D  C  A  I  H  F  I  L  D  P  L  Y  *  M  Y  *  R  N  K  E  W  V  L  I  P  Y  P  G  V  E  T  *  L  V  V   </first_frame>
            <second_frame>  Q  N  Q  L  M  I  *  *  V  T  P  M  N  W  E  V  P  Q  L  W  W  T  E  Q  H  P  R :   K  K  I  S  D  L  L  V  G  C  L  R  V  E  E  D  M  V  H  I  M  H  I  *  V  Q  L  L  D  M  V  R  L  V  L  L  P  Y  M  I  I  L  V  L  C  M  E  V  S   : R  G  G  G  G  G  G  G  G  G  G  G  F  P  S  R  G  G  L  G  Q  K  I  F  V  G  R  L  P  Q  E  A  T  T  E  D  L  R  Q  Y  F  G  R  F  G  R  V  L  D  V  Y  V  P  K  :  D  P  R  R  P  G  H  R  G  F  G  F  V  T  F  A  D  D  G  V  A  D  R  V  S  R  R  P  H  E  I  C  G  H  Q  :  V  A  I  D  S  A  T  P  L  D  D  A  G  P  S  N  N  Y  M  M  D  P  P  P  P  A  P  E  A  Y  G  G  Y  G  G  P  M  R  T  Y  G  R  M  Y  G  G  L  D  Y  D  D  :  W  G  Y  G  L  G  G  G  R  P  S  R  S  D  M  R  Y  R  P  Y  *  L  A  W  L  D  R  R  R  S  R  S  D  M  R  F  R  P  *  *  L  C  V  A  G  G  Q  R  L  S  E  F  P  M  G  D  N  N  R  Y  V  I  F  I  S  V  Y  Y  *  V  D  I  I  I  H  V  L  L  I  L  K  *  L  K  K  Q  C  *  W  I  V  Q  F  T  S  Y  L  I  L  C  I  K  C  I  E  E  T  K  N  G  C  *  F  H  I  Q  E  *  K  H  S  W  *  *  </second_frame>
            <third_frame>   R  I  S  *  *  S  D  E  *  H  P  *  T  G  R  F  H  N  C  G  G  P  S  N  T  Q   : G  R  R  F  Q  T  C  *  S  D  V  S  E  W  R  R  I  W  C  I  *  C  I  Y  E  C  N  Y  *  I  W  C  A  W  C  S  Y  L  I  *  S  S  *  F  Y  V  W  K  *  V  :  E  V  E  V  E  V  E  V  E  V  E  D  F  H  L  V  V  A  W  A  R  R  S  L  L  V  D  Y  L  K  R  Q  Q  L  K  I  F  A  S  I  L  V  D  L  A  V  F  *  M  C  M  S  Q  R :   I  Q  E  D  Q  G  I  E  G  L  V  L  L  H  L  L  M  M  V  L  Q  I  V  F  L  E  G  L  M  R  Y  V  D  I  R :   L  Q  L  I  L  L  L  L  L  M  M  L  V  Q  V  T  I  T  *  W  I  L  L  L  L  L  L  K  H  M  G  D  M  V  V  L  C  V  L  M  E  G  C  M  G  A  *  I  M  M  I :   G  V  T  A  W  V  V  G  D  L  Q  D  Q  I  *  D  T  G  P  T  S  W  P  G  W  I  G  G  G  Q  D  Q  I  *  D  S  G  P  S  S  F  V  L  Q  E  V  R  G  C  L  N  F  Q  W  V  T  T  I  D  M  S  Y  L  Y  Q  F  I  I  R  W  T  S  *  Y  M  C  Y  *  Y  L  S  N  *  K  S  S  A  D  G  L  C  N  S  L  H  T  *  S  F  V  L  N  V  L  K  K  Q  R  M  G  A  N  S  I  S  R  S  R  N  I  V  G  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36352" stop="36427"/>
                    <exon start="36631" stop="36791"/>
                    <exon start="36896" stop="37000"/>
                    <exon start="37554" stop="37706"/>
                    <exon start="38297" stop="38359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQLLDMVRLVLLPYMIILVLCMEVSRGGGGGGGGGGGFPSRGGLGQKIFVGRLPQEATTEDLRQYFGRFGRVLDVYVPKDPRRPGHRGFGFVTFADDGVADRVSRRPHEICGHQVAIDSATPLDDAGPSNNYMMDPPPPAPEAYGGYGGPMRTYGRMYGGLDYDDWGYGLGGGRPSRSDMRYRPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42235" PGL_stop="39185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42235" e_stop="42177"/>
            <exon e_start="41501" e_stop="40907"/>
            <exon e_start="40204" e_stop="39895"/>
            <exon e_start="39595" e_stop="39514"/>
            <exon e_start="39425" e_stop="39185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.986" e_score="0.997"/>
          <exon-intron don_prob="0.844" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42235" e_stop="42177" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42176" i_stop="41502" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41501" e_stop="40907" e_length="595"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40906" i_stop="40205" i_length="702"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="40204" e_stop="39895" e_length="310"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.986">
            <gDNA_intron_boundary i_start="39894" i_stop="39596" i_length="299"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39595" e_stop="39514" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.844" acc_prob="0.876">
            <gDNA_intron_boundary i_start="39513" i_stop="39426" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39425" e_stop="39185" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42235" stop="42177"/>
              <exon start="41501" stop="40985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41242" stop="40907"/>
              <exon start="40204" stop="39921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41191" stop="40907"/>
              <exon start="40204" stop="39895"/>
              <exon start="39595" stop="39514"/>
              <exon start="39425" stop="39203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40077" stop="39895"/>
              <exon start="39595" stop="39514"/>
              <exon start="39425" stop="39185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242730" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39955" stop="39895"/>
              <exon start="39595" stop="39514"/>
              <exon start="39425" stop="39185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231450" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39946" stop="39895"/>
              <exon start="39595" stop="39514"/>
              <exon start="39425" stop="39185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240600" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACCACAACTCAAAGTTGGTAAAAGCCTGAACTCTTCTGCATTAGCAGTAGTTAAAG : GGTTATTGTTCCAAGATTTATGTGGCATGCAATTTGCCATTATTGAGAATCATGAAGCAGAATTCTACTTCCTTGAGGAATTCGGGTTTATATACAAGCCCAGCAACACCAGAATATGGAGATAATAATGTTAGAGGATTTCAGAAGGGATGGAGTTCTGAACGAGTCCCGTTGCCGACTAACAGCGGCAGGAGGCATATTAGTACTACTGCATTGATGCCTTTCAATAGTGGAAGGACAGTGCCTTCAAAATGGGATGATGCTGAAAGGTGGATTACTAGCCCAGTGTCAAGTTATGGTGTTTGGAGGACTCCAAACGCACAAACCTACAGGGGCCCCAAGTCTAAAAGTGGACCTCTTGGGCCACCTGGCCTAATGTATTTACCGAACTATTCGCCCTCTATGCCAGTCCTTGAAAGTGGAGGTATAAGTAACTTCATTGCAAATTCACCATTTACAACTGGTGTACTGGTGCCTGATGGGGTATCCATTCATTATGGTGCTGGTGAATATGCTCAGAATAGTATGGCTCGAGCAACCAGTGCTCCCGGTCTGTCAGATTTGTTCAGTGAATCTTCAGTACCAAGCTCTCCAG : ATGATGTCACAAAGGAGCCAGATTCTATTTCCTTTGCAGTTTTGAGGAGAGACATGGCAACACAAATGAGCTCTGATGACAGTACACATACATCTCCCCAGGAAAGGTCATCTTCAATCCCTCCTGGAGTGGAGCAGAGCAGGCAGCATTCCACTAAAGTCGAGATTAGAGACGTGCAGGTTGACAAAGGAGACCCAATTTTAGGGCTATCTCGGAAAAGCCGGGTGAGGAAACCCAAGAAACAATTACCAGACATAAGTTCGCCTATCTCAACGTGGGATGTTGTAGATGGAACAAAGAGTATGACAAA : GTCGCAAAGAGAGGAAGCCAGGATCGCTGCTTGGGAGAACTTGCAGAAGGCCAAAGCAGAAGCAGAAATCCAAAAGCTTGAG : ATGAAACTAGAAAAGAGGAGGTCAGCATCCATGGATAAGATTCTGAACAAGCTTAGACACGCTCAGGTGAAGGCCCAAAATATGAGACGTGCAACTTCGGAGAGTCAGCCTAGAAGGGATTCCCACAGAATCATTCCATTTCGGGAGTATTTCAAGATTACATCATTTAGCAGTTGCTTTGTTTGCCGTATCCCTTGATTTTGTGTACAGGCATGAGGCTTTCTGAAGTAAAATTCAAGTC</gDNA_template>
            <first_frame> S  T  T  T  Q  S  W  *  K  P  E  L  F  C  I  S  S  S  *  R :   V  I  V  P  R  F  M  W  H  A  I  C  H  Y  *  E  S  *  S  R  I  L  L  P  *  G  I  R  V  Y  I  Q  A  Q  Q  H  Q  N  M  E  I  I  M  L  E  D  F  R  R  D  G  V  L  N  E  S  R  C  R  L  T  A  A  G  G  I  L  V  L  L  H  *  C  L  S  I  V  E  G  Q  C  L  Q  N  G  M  M  L  K  G  G  L  L  A  Q  C  Q  V  M  V  F  G  G  L  Q  T  H  K  P  T  G  A  P  S  L  K  V  D  L  L  G  H  L  A  *  C  I  Y  R  T  I  R  P  L  C  Q  S  L  K  V  E  V  *  V  T  S  L  Q  I  H  H  L  Q  L  V  Y  W  C  L  M  G  Y  P  F  I  M  V  L  V  N  M  L  R  I  V  W  L  E  Q  P  V  L  P  V  C  Q  I  C  S  V  N  L  Q  Y  Q  A  L  Q  :  M  M  S  Q  R  S  Q  I  L  F  P  L  Q  F  *  G  E  T  W  Q  H  K  *  A  L  M  T  V  H  I  H  L  P  R  K  G  H  L  Q  S  L  L  E  W  S  R  A  G  S  I  P  L  K  S  R  L  E  T  C  R  L  T  K  E  T  Q  F  *  G  Y  L  G  K  A  G  *  G  N  P  R  N  N  Y  Q  T  *  V  R  L  S  Q  R  G  M  L  *  M  E  Q  R  V  *  Q   : S  R  K  E  R  K  P  G  S  L  L  G  R  T  C  R  R  P  K  Q  K  Q  K  S  K  S  L  R :   *  N  *  K  R  G  G  Q  H  P  W  I  R  F  *  T  S  L  D  T  L  R  *  R  P  K  I  *  D  V  Q  L  R  R  V  S  L  E  G  I  P  T  E  S  F  H  F  G  S  I  S  R  L  H  H  L  A  V  A  L  F  A  V  S  L  D  F  V  Y  R  H  E  A  F  *  S  K  I  Q  V </first_frame>
            <second_frame>  A  P  Q  L  K  V  G  K  S  L  N  S  S  A  L  A  V  V  K   : G  L  L  F  Q  D  L  C  G  M  Q  F  A  I  I  E  N  H  E  A  E  F  Y  F  L  E  E  F  G  F  I  Y  K  P  S  N  T  R  I  W  R  *  *  C  *  R  I  S  E  G  M  E  F  *  T  S  P  V  A  D  *  Q  R  Q  E  A  Y  *  Y  Y  C  I  D  A  F  Q  *  W  K  D  S  A  F  K  M  G  *  C  *  K  V  D  Y  *  P  S  V  K  L  W  C  L  E  D  S  K  R  T  N  L  Q  G  P  Q  V  *  K  W  T  S  W  A  T  W  P  N  V  F  T  E  L  F  A  L  Y  A  S  P  *  K  W  R  Y  K  *  L  H  C  K  F  T  I  Y  N  W  C  T  G  A  *  W  G  I  H  S  L  W  C  W  *  I  C  S  E  *  Y  G  S  S  N  Q  C  S  R  S  V  R  F  V  Q  *  I  F  S  T  K  L  S  R :   *  C  H  K  G  A  R  F  Y  F  L  C  S  F  E  E  R  H  G  N  T  N  E  L  *  *  Q  Y  T  Y  I  S  P  G  K  V  I  F  N  P  S  W  S  G  A  E  Q  A  A  F  H  *  S  R  D  *  R  R  A  G  *  Q  R  R  P  N  F  R  A  I  S  E  K  P  G  E  E  T  Q  E  T  I  T  R  H  K  F  A  Y  L  N  V  G  C  C  R  W  N  K  E  Y  D  K  :  V  A  K  R  G  S  Q  D  R  C  L  G  E  L  A  E  G  Q  S  R  S  R  N  P  K  A  *   : D  E  T  R  K  E  E  V  S  I  H  G  *  D  S  E  Q  A  *  T  R  S  G  E  G  P  K  Y  E  T  C  N  F  G  E  S  A  *  K  G  F  P  Q  N  H  S  I  S  G  V  F  Q  D  Y  I  I  *  Q  L  L  C  L  P  Y  P  L  I  L  C  T  G  M  R  L  S  E  V  K  F  K   </second_frame>
            <third_frame>   H  H  N  S  K  L  V  K  A  *  T  L  L  H  *  Q  *  L  K  :  G  Y  C  S  K  I  Y  V  A  C  N  L  P  L  L  R  I  M  K  Q  N  S  T  S  L  R  N  S  G  L  Y  T  S  P  A  T  P  E  Y  G  D  N  N  V  R  G  F  Q  K  G  W  S  S  E  R  V  P  L  P  T  N  S  G  R  R  H  I  S  T  T  A  L  M  P  F  N  S  G  R  T  V  P  S  K  W  D  D  A  E  R  W  I  T  S  P  V  S  S  Y  G  V  W  R  T  P  N  A  Q  T  Y  R  G  P  K  S  K  S  G  P  L  G  P  P  G  L  M  Y  L  P  N  Y  S  P  S  M  P  V  L  E  S  G  G  I  S  N  F  I  A  N  S  P  F  T  T  G  V  L  V  P  D  G  V  S  I  H  Y  G  A  G  E  Y  A  Q  N  S  M  A  R  A  T  S  A  P  G  L  S  D  L  F  S  E  S  S  V  P  S  S  P   : D  D  V  T  K  E  P  D  S  I  S  F  A  V  L  R  R  D  M  A  T  Q  M  S  S  D  D  S  T  H  T  S  P  Q  E  R  S  S  S  I  P  P  G  V  E  Q  S  R  Q  H  S  T  K  V  E  I  R  D  V  Q  V  D  K  G  D  P  I  L  G  L  S  R  K  S  R  V  R  K  P  K  K  Q  L  P  D  I  S  S  P  I  S  T  W  D  V  V  D  G  T  K  S  M  T  K :   S  Q  R  E  E  A  R  I  A  A  W  E  N  L  Q  K  A  K  A  E  A  E  I  Q  K  L  E  :  M  K  L  E  K  R  R  S  A  S  M  D  K  I  L  N  K  L  R  H  A  Q  V  K  A  Q  N  M  R  R  A  T  S  E  S  Q  P  R  R  D  S  H  R  I  I  P  F  R  E  Y  F  K  I  T  S  F  S  S  C  F  V  C  R  I  P  *  F  C  V  Q  A  *  G  F  L  K  *  N  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42182" stop="42177"/>
                    <exon start="41501" stop="40907"/>
                    <exon start="40204" stop="39895"/>
                    <exon start="39595" stop="39514"/>
                    <exon start="39425" stop="39228"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGYCSKIYVACNLPLLRIMKQNSTSLRNSGLYTSPATPEYGDNNVRGFQKGWSSERVPLPTNSGRRHISTTALMPFNSGRTVPSKWDDAERWITSPVSSYGVWRTPNAQTYRGPKSKSGPLGPPGLMYLPNYSPSMPVLESGGISNFIANSPFTTGVLVPDGVSIHYGAGEYAQNSMARATSAPGLSDLFSESSVPSSPDDVTKEPDSISFAVLRRDMATQMSSDDSTHTSPQERSSSIPPGVEQSRQHSTKVEIRDVQVDKGDPILGLSRKSRVRKPKKQLPDISSPISTWDVVDGTKSMTKSQREEARIAAWENLQKAKAEAEIQKLEMKLEKRRSASMDKILNKLRHAQVKAQNMRRATSESQPRRDSHRIIPFREYFKITSFSSCFVCRIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49917" PGL_stop="55252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49917" e_stop="50466"/>
            <exon e_start="50905" e_stop="51067"/>
            <exon e_start="51221" e_stop="51295"/>
            <exon e_start="51465" e_stop="51565"/>
            <exon e_start="51681" e_stop="51796"/>
            <exon e_start="52384" e_stop="52595"/>
            <exon e_start="52749" e_stop="52840"/>
            <exon e_start="53058" e_stop="53172"/>
            <exon e_start="53274" e_stop="53377"/>
            <exon e_start="53737" e_stop="53782"/>
            <exon e_start="53893" e_stop="53957"/>
            <exon e_start="54057" e_stop="54143"/>
            <exon e_start="54459" e_stop="54513"/>
            <exon e_start="54604" e_stop="54692"/>
            <exon e_start="54784" e_stop="54868"/>
            <exon e_start="54946" e_stop="55250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.085" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.547" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49917" e_stop="50466" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="50467" i_stop="50904" i_length="438"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50905" e_stop="51067" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51068" i_stop="51220" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51221" e_stop="51295" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51296" i_stop="51464" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51465" e_stop="51565" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.751">
            <gDNA_intron_boundary i_start="51566" i_stop="51680" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51681" e_stop="51796" e_length="116"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51797" i_stop="52383" i_length="587"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52384" e_stop="52595" e_length="212"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52749" e_stop="52840" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53058" e_stop="53172" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.895" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53274" e_stop="53377" e_length="104"/>
          </exon>
          <intron i_serial="9" don_prob="0.085" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53737" e_stop="53782" e_length="46"/>
          </exon>
          <intron i_serial="10" don_prob="0.972" acc_prob="0.983">
            <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53957" e_length="65"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="54057" e_stop="54143" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.914" acc_prob="0.683">
            <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="54459" e_stop="54513" e_length="55"/>
          </exon>
          <intron i_serial="13" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="54604" e_stop="54692" e_length="89"/>
          </exon>
          <intron i_serial="14" don_prob="0.973" acc_prob="0.547">
            <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="54784" e_stop="54868" e_length="85"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.925">
            <gDNA_intron_boundary i_start="54869" i_stop="54945" i_length="77"/>
          </intron>
          <exon e_serial="16" e_score="0.997">
            <gDNA_exon_boundary e_start="54946" e_stop="55250" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49917" stop="50466"/>
              <exon start="50905" stop="51067"/>
              <exon start="51221" stop="51295"/>
              <exon start="51465" stop="51565"/>
              <exon start="51681" stop="51796"/>
              <exon start="52384" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54868"/>
              <exon start="54946" stop="55215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50918" stop="51067"/>
              <exon start="51221" stop="51295"/>
              <exon start="51465" stop="51565"/>
              <exon start="51681" stop="51796"/>
              <exon start="52384" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51754" stop="51796"/>
              <exon start="52384" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52493" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53101" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54868"/>
              <exon start="54946" stop="55119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54083" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54868"/>
              <exon start="54946" stop="54990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54609" stop="54692"/>
              <exon start="54784" stop="54868"/>
              <exon start="54946" stop="55250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCTTGAACTGGGGTTCAATTAAAAGATGTATTCAACTGTTTTTTACACTTCAGTGCATCCTTCCACTTCAGTTTTATCAAGAAAGCAGCTACCTTTATTGATTTCCAAGGACTTTTCTGCAGAGTTATATCATTCTTTACCTTGTAGGAGCTTGGAAAATGGGCATATCAACAAGGTTAAAGGAGTAAAAGTAAAAGCAACAATTGCTGAAGCTCCAGTTACTCCTACAGAGAAGACTGACTCTGGGGCTAACGGTGATTTGAAGGTTCCACAGAAGAAGTTGAAAGTACTTGTTGCGGGTGGTGGGATTGGTGGGTTAGTGTTTGCTTTGGCAGCAAAGAAAAGGGGGTTTGATGTATTGGTGTTTGAGAGGGATTTAAGTGCTATCAGAGGAGAGGGACAATATAGAGGTCCAATACAGATACAGAGCAATGCATTGGCTGCTTTAGAAGCAATTGATTTGGATGTTGCTGAAGACATTATGAATGCTGGCTGCATCACTGGTCAAAGGATTAATGGCTTGGTTGATGGTATTTCTGGCAACTG : GTATTGCAAGTTTGATACGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACAAGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAG : GTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAG : GTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGG : GTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACG : GTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG : GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG : CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA : TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG : GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA : GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA : GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG : GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG : GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA : TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAG : GCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTAT</gDNA_template>
            <first_frame> L  F  L  N  W  G  S  I  K  R  C  I  Q  L  F  F  T  L  Q  C  I  L  P  L  Q  F  Y  Q  E  S  S  Y  L  Y  *  F  P  R  T  F  L  Q  S  Y  I  I  L  Y  L  V  G  A  W  K  M  G  I  S  T  R  L  K  E  *  K  *  K  Q  Q  L  L  K  L  Q  L  L  L  Q  R  R  L  T  L  G  L  T  V  I  *  R  F  H  R  R  S  *  K  Y  L  L  R  V  V  G  L  V  G  *  C  L  L  W  Q  Q  R  K  G  G  L  M  Y  W  C  L  R  G  I  *  V  L  S  E  E  R  D  N  I  E  V  Q  Y  R  Y  R  A  M  H  W  L  L  *  K  Q  L  I  W  M  L  L  K  T  L  *  M  L  A  A  S  L  V  K  G  L  M  A  W  L  M  V  F  L  A  T   : G  I  A  S  L  I  R  S  L  Q  Q  W  N  V  D  F  Q  *  Q  E  L  S  V  A  *  L  C  S  R  S  L  H  V  L  L  V  R  R  *  L  *  M  K  V  M  L  *  T  L  R  M  M  E  R  R :   L  L  W  F  L  R  M  D  N  D  L  Q  V  I  F  W  L  V  L  M  A  *  D  L  R :   Y  G  L  I  Y  S  D  P  V  K  L  L  T  L  A  T  L  V  I  L  E  L  Q  I  S  F  Q  L  I  L  I  Q  L   : G  T  A  S  F  W  A  T  N  S  T  L  F  L  Q  M  W  G  E  A  R  C  S  G  M  H  F  T  M  N  Q  L  V  V  R  M  P  Q  T  :  V  K  R  K  D  C  L  K  Y  L  G  D  G  V  T  M  L  *  T  Y  *  L  P  Q  M  K  M  Q  F  F  V  V  T  S  M  I  D  R  Q  P  L  V  G  E  E  V  V  L  H  C  L  G  T  P  S  M  P  C  S  L  I  W  V  K  G  D  A  W  P  *  R :   I  A  I  N  *  H  W  N  L  K  K  H  A  V  E  V  Q  S  L  E  A  L  W  I  S  S  H  L  *  G   : A  M  K  V  L  E  N  F  E  L  E  S  S  M  D  W  L  E  W  L  Q  S  W  H  L  L  T  R  L  I  L  A  S  D  L  V  H  Y  H :   F  *  R  S  I  E  Y  H  I  L  E  E  L  V  E  E  F  L  L  T  W  E  C  L  *  C  *  V  G  F  *  E  A  M   : G  T  S  L  K  A  E  *  N  I  A  G  Y  L  R  K :   Q  M  T  N  *  E  N  G  L  K  M  M  M  L  *  S  V  L  L  M  Q   : S  G  Y  F  Y  L  R  G  M  A  L  L  V  *  K  L  L  F  *  A  E  M  R  M  S  L  A  L  S   : G  P  S  H  I  Q  I  F  L  E  N  Q  *  F  Y  L  C  H  R :   Y  L  K  C  T  P  G  Y  H  A  K  T  E  H  F  L  *  L  I  Y  E  V  N  M  V  P  G  L  Q   : I  M  K  A  E  D  I  G  R  L  Q  T  S  L  H  V  F  I  H  Q  M  L  S  N  L  V  L  I  R :   Q  H  F  V  L  K  Q  *  N  F  H  *  K  L  L  K  G  R  K  S  A  K  Q  W  R  Q  R  K  A  *  P  D  I  N  R  K  L  Y  S  I  L  *  Q  T  S  G  V  E  Q  F  K  H  S  *  F  C  I  L  *  V  L  E  K  I  H  K  Q  D  T  M  K  E  N  T  E  I  L  L  K  K  S  G  E  C  H  G  H  C  L  L  F  Y  H  C  *  K  Y  I  T  S  L  </first_frame>
            <second_frame>  F  S  *  T  G  V  Q  L  K  D  V  F  N  C  F  L  H  F  S  A  S  F  H  F  S  F  I  K  K  A  A  T  F  I  D  F  Q  G  L  F  C  R  V  I  S  F  F  T  L  *  E  L  G  K  W  A  Y  Q  Q  G  *  R  S  K  S  K  S  N  N  C  *  S  S  S  Y  S  Y  R  E  D  *  L  W  G  *  R  *  F  E  G  S  T  E  E  V  E  S  T  C  C  G  W  W  D  W  W  V  S  V  C  F  G  S  K  E  K  G  V  *  C  I  G  V  *  E  G  F  K  C  Y  Q  R  R  G  T  I  *  R  S  N  T  D  T  E  Q  C  I  G  C  F  R  S  N  *  F  G  C  C  *  R  H  Y  E  C  W  L  H  H  W  S  K  D  *  W  L  G  *  W  Y  F  W  Q  L  :  V  L  Q  V  *  Y  V  H  S  S  S  G  T  W  T  S  S  D  K  S  Y  Q  S  H  D  F  A  A  D  P  C  T  C  C  W  *  G  D  N  Y  E  *  K  *  C  C  R  L  *  G  *  W  R  E   : G  Y  C  G  S  *  E  W  T  T  I  Y  R  *  S  S  G  W  C  *  W  H  K  I  *   : G  T  D  *  F  I  R  T  Q  *  S  Y  L  L  W  L  H  L  L  Y  W  N  C  R  F  R  S  S  *  Y  *  Y  S  W  :  V  P  R  L  F  G  P  Q  T  V  L  C  F  F  R  C  G  G  R  Q  D  A  V  V  C  I  L  Q  *  T  S  W  W  C  G  C  P  K  R :   *  K  G  K  I  A  *  N  I  W  G  M  V  *  Q  C  Y  R  P  I  S  C  H  R  *  R  C  N  S  S  S  *  H  L  *  *  T  A  N  L  *  L  G  K  R  S  C  Y  I  A  W  G  L  R  P  C  H  A  A  *  F  G  S  R  G  M  H  G  H  R   : G  *  L  S  T  S  T  G  T  *  K  S  M  Q  S  K  C  R  V  W  K  P  C  G  Y  H  L  I  F  K  E  :  L  *  K  C  *  K  T  S  S  W  S  H  P  W  T  G  *  N  G  C  N  H  G  I  Y  L  Q  G  L  S  W  R  R  T  W  S  T  I   : I  F  D  A  V  *  N  T  T  S  W  K  S  W  W  K  S  F  Y  *  L  G  N  A  S  D  V  K  L  G  S  R  R  Q  W  :  G  Q  A  *  R  Q  N  K  T  L  Q  A  I  *  E   : S  K  *  P  I  E  K  M  V  *  R  *  *  C  F  R  A  C  Y  *  C  R  :  V  V  T  F  T  C  G  E  W  L  F  W  F  R  S  Y  C  F  K  Q  R  *  G  C  P  L  H  C  R  :  V  H  L  T  Y  K  Y  S  W  K  I  N  S  F  T  F  A  T   : G  I  *  N  A  R  P  D  I  M  Q  R  R  S  I  F  C  N  *  F  T  K  *  T  W  Y  L  G  Y  R  :  *  *  R  Q  K  I  S  D  V  S  K  L  P  Y  T  F  S  S  I  R  C  Y  R  I  W  F  *  *   : G  S  I  S  C  *  S  N  E  I  S  T  K  N  F  *  K  E  G  R  A  R  S  S  G  G  S  V  K  L  D  L  I  *  T  G  N  C  T  A  F  Y  S  K  H  Q  A  L  S  N  L  S  I  V  N  F  V  Y  C  R  F  *  K  R  S  I  N  K  T  P  *  K  K  I  Q  R  F  S  *  R  N  L  E  N  V  M  D  I  V  S  Y  S  T  I  A  K  N  I  L  L  L  Y </second_frame>
            <third_frame>   F  L  E  L  G  F  N  *  K  M  Y  S  T  V  F  Y  T  S  V  H  P  S  T  S  V  L  S  R  K  Q  L  P  L  L  I  S  K  D  F  S  A  E  L  Y  H  S  L  P  C  R  S  L  E  N  G  H  I  N  K  V  K  G  V  K  V  K  A  T  I  A  E  A  P  V  T  P  T  E  K  T  D  S  G  A  N  G  D  L  K  V  P  Q  K  K  L  K  V  L  V  A  G  G  G  I  G  G  L  V  F  A  L  A  A  K  K  R  G  F  D  V  L  V  F  E  R  D  L  S  A  I  R  G  E  G  Q  Y  R  G  P  I  Q  I  Q  S  N  A  L  A  A  L  E  A  I  D  L  D  V  A  E  D  I  M  N  A  G  C  I  T  G  Q  R  I  N  G  L  V  D  G  I  S  G  N  W :   Y  C  K  F  D  T  F  T  P  A  V  E  R  G  L  P  V  T  R  V  I  S  R  M  T  L  Q  Q  I  L  A  R  A  V  G  E  E  I  I  M  N  E  S  N  V  V  D  F  E  D  D  G  E  K  :  V  T  V  V  L  E  N  G  Q  R  F  T  G  D  L  L  V  G  A  D  G  I  R  S  K  :  V  R  T  N  L  F  G  P  S  E  A  T  Y  S  G  Y  T  C  Y  T  G  I  A  D  F  V  P  A  D  I  D  T  V  G :   Y  R  V  F  L  G  H  K  Q  Y  F  V  S  S  D  V  G  G  G  K  M  Q  W  Y  A  F  Y  N  E  P  A  G  G  A  D  A  P  N   : G  K  K  E  R  L  L  K  I  F  G  G  W  C  D  N  V  I  D  L  L  V  A  T  D  E  D  A  I  L  R  R  D  I  Y  D  R  P  P  T  F  S  W  G  R  G  R  V  T  L  L  G  D  S  V  H  A  M  Q  P  N  L  G  Q  G  G  C  M  A  I  E  :  D  S  Y  Q  L  A  L  E  L  E  K  A  C  S  R  S  A  E  S  G  S  P  V  D  I  I  S  S  L  R  S :   Y  E  S  A  R  K  L  R  V  G  V  I  H  G  L  A  R  M  A  A  I  M  A  S  T  Y  K  A  Y  L  G  V  G  L  G  P  L  S  :  F  L  T  Q  Y  R  I  P  H  P  G  R  V  G  G  R  V  F  I  D  L  G  M  P  L  M  L  S  W  V  L  G  G  N  G :   D  K  L  E  G  R  I  K  H  C  R  L  S  E  K  :  A  N  D  Q  L  R  K  W  F  E  D  D  D  A  L  E  R  A  T  D  A  E :   W  L  L  L  P  A  G  N  G  S  S  G  L  E  A  I  V  L  S  R  D  E  D  V  P  C  T  V  G :   S  I  S  H  T  N  I  P  G  K  S  I  V  L  P  L  P  Q  :  V  S  E  M  H  A  R  I  S  C  K  D  G  A  F  F  V  T  D  L  R  S  E  H  G  T  W  V  T  D :   N  E  G  R  R  Y  R  T  S  P  N  F  P  T  R  F  H  P  S  D  V  I  E  F  G  S  D  K  :  A  A  F  R  V  K  A  M  K  F  P  L  K  T  S  E  R  K  E  E  R  E  A  V  E  A  A  *  S  L  T  *  Y  K  Q  E  I  V  Q  H  F  I  A  N  I  R  R  *  A  I  *  A  *  L  I  L  Y  T  V  G  F  R  K  D  P  *  T  R  H  H  E  R  K  Y  R  D  S  P  K  E  I  W  R  M  S  W  T  L  S  L  I  L  P  L  L  K  I  Y  Y  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49943" stop="50466"/>
                    <exon start="50905" stop="51067"/>
                    <exon start="51221" stop="51295"/>
                    <exon start="51465" stop="51565"/>
                    <exon start="51681" stop="51796"/>
                    <exon start="52384" stop="52595"/>
                    <exon start="52749" stop="52840"/>
                    <exon start="53058" stop="53172"/>
                    <exon start="53274" stop="53377"/>
                    <exon start="53737" stop="53782"/>
                    <exon start="53893" stop="53957"/>
                    <exon start="54057" stop="54143"/>
                    <exon start="54459" stop="54513"/>
                    <exon start="54604" stop="54692"/>
                    <exon start="54784" stop="54868"/>
                    <exon start="54946" stop="55029"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2010</number_coding_nucleotides>
                  <number_encoded_amino_acids>670</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMYSTVFYTSVHPSTSVLSRKQLPLLISKDFSAELYHSLPCRSLENGHINKVKGVKVKATIAEAPVTPTEKTDSGANGDLKVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEDIMNAGCITGQRINGLVDGISGNWYCKFDTFTPAVERGLPVTRVISRMTLQQILARAVGEEIIMNESNVVDFEDDGEKVTVVLENGQRFTGDLLVGADGIRSKVRTNLFGPSEATYSGYTCYTGIADFVPADIDTVGYRVFLGHKQYFVSSDVGGGKMQWYAFYNEPAGGADAPNGKKERLLKIFGGWCDNVIDLLVATDEDAILRRDIYDRPPTFSWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDSYQLALELEKACSRSAESGSPVDIISSLRSYESARKLRVGVIHGLARMAAIMASTYKAYLGVGLGPLSFLTQYRIPHPGRVGGRVFIDLGMPLMLSWVLGGNGDKLEGRIKHCRLSEKANDQLRKWFEDDDALERATDAEWLLLPAGNGSSGLEAIVLSRDEDVPCTVGSISHTNIPGKSIVLPLPQVSEMHARISCKDGAFFVTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSDKAAFRVKAMKFPLKTSERKEEREAVEAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50918" e_stop="51067"/>
            <exon e_start="51221" e_stop="51295"/>
            <exon e_start="51465" e_stop="51565"/>
            <exon e_start="51681" e_stop="51796"/>
            <exon e_start="52384" e_stop="52595"/>
            <exon e_start="52749" e_stop="52840"/>
            <exon e_start="53058" e_stop="53172"/>
            <exon e_start="53274" e_stop="53377"/>
            <exon e_start="53737" e_stop="53782"/>
            <exon e_start="53893" e_stop="53957"/>
            <exon e_start="54057" e_stop="54143"/>
            <exon e_start="54459" e_stop="54513"/>
            <exon e_start="54604" e_stop="54692"/>
            <exon e_start="54784" e_stop="55252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.085" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.683" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.547" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="50918" e_stop="51067" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51068" i_stop="51220" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51221" e_stop="51295" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="51296" i_stop="51464" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51465" e_stop="51565" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.751">
            <gDNA_intron_boundary i_start="51566" i_stop="51680" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51681" e_stop="51796" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.731" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51797" i_stop="52383" i_length="587"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52384" e_stop="52595" e_length="212"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52596" i_stop="52748" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52749" e_stop="52840" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52841" i_stop="53057" i_length="217"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53058" e_stop="53172" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.895" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53173" i_stop="53273" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53274" e_stop="53377" e_length="104"/>
          </exon>
          <intron i_serial="8" don_prob="0.085" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53378" i_stop="53736" i_length="359"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53737" e_stop="53782" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.972" acc_prob="0.983">
            <gDNA_intron_boundary i_start="53783" i_stop="53892" i_length="110"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53957" e_length="65"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53958" i_stop="54056" i_length="99"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="54057" e_stop="54143" e_length="87"/>
          </exon>
          <intron i_serial="11" don_prob="0.914" acc_prob="0.683">
            <gDNA_intron_boundary i_start="54144" i_stop="54458" i_length="315"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="54459" e_stop="54513" e_length="55"/>
          </exon>
          <intron i_serial="12" don_prob="0.894" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54514" i_stop="54603" i_length="90"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="54604" e_stop="54692" e_length="89"/>
          </exon>
          <intron i_serial="13" don_prob="0.973" acc_prob="0.547">
            <gDNA_intron_boundary i_start="54693" i_stop="54783" i_length="91"/>
          </intron>
          <exon e_serial="14" e_score="0.982">
            <gDNA_exon_boundary e_start="54784" e_stop="55252" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50918" stop="51067"/>
              <exon start="51221" stop="51295"/>
              <exon start="51465" stop="51565"/>
              <exon start="51681" stop="51796"/>
              <exon start="52384" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51754" stop="51796"/>
              <exon start="52384" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52493" stop="52595"/>
              <exon start="52749" stop="52840"/>
              <exon start="53058" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53101" stop="53172"/>
              <exon start="53274" stop="53377"/>
              <exon start="53737" stop="53782"/>
              <exon start="53893" stop="53957"/>
              <exon start="54057" stop="54143"/>
              <exon start="54459" stop="54513"/>
              <exon start="54604" stop="54692"/>
              <exon start="54784" stop="54856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54686" stop="54692"/>
              <exon start="54784" stop="55233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54848" stop="55252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACGTTCACTCCAGCAGTGGAACGTGGACTTCCAGTGACAAGAGTTATCAGTCGCATGACTTTGCAGCAGATCCTTGCACGTGCTGTTGGTGAGGAGATAATTATGAATGAAAGTAATGTTGTAGACTTTGAGGATGATGGAGAGAAG : GTTACTGTGGTTCTTGAGAATGGACAACGATTTACAGGTGATCTTCTGGTTGGTGCTGATGGCATAAGATCTAAG : GTACGGACTAATTTATTCGGACCCAGTGAAGCTACTTACTCTGGCTACACTTGTTATACTGGAATTGCAGATTTCGTTCCAGCTGATATTGATACAGTTGG : GTACCGCGTCTTTTTGGGCCACAAACAGTACTTTGTTTCTTCAGATGTGGGGGGAGGCAAGATGCAGTGGTATGCATTTTACAATGAACCAGCTGGTGGTGCGGATGCCCCAAACG : GTAAAAAGGAAAGATTGCTTAAAATATTTGGGGGATGGTGTGACAATGTTATAGACCTATTAGTTGCCACAGATGAAGATGCAATTCTTCGTCGTGACATCTATGATAGACCGCCAACCTTTAGTTGGGGAAGAGGTCGTGTTACATTGCTTGGGGACTCCGTCCATGCCATGCAGCCTAATTTGGGTCAAGGGGGATGCATGGCCATAGAG : GATAGCTATCAACTAGCACTGGAACTTGAAAAAGCATGCAGTCGAAGTGCAGAGTCTGGAAGCCCTGTGGATATCATCTCATCTTTAAGGAG : CTATGAAAGTGCTAGAAAACTTCGAGTTGGAGTCATCCATGGACTGGCTAGAATGGCTGCAATCATGGCATCTACTTACAAGGCTTATCTTGGCGTCGGACTTGGTCCACTATCA : TTTTTGACGCAGTATAGAATACCACATCCTGGAAGAGTTGGTGGAAGAGTTTTTATTGACTTGGGAATGCCTCTGATGTTAAGTTGGGTTCTAGGAGGCAATGG : GGACAAGCTTGAAGGCAGAATAAAACATTGCAGGCTATCTGAGAAA : GCAAATGACCAATTGAGAAAATGGTTTGAAGATGATGATGCTTTAGAGCGTGCTACTGATGCAGA : GTGGTTACTTTTACCTGCGGGGAATGGCTCTTCTGGTTTAGAAGCTATTGTTTTAAGCAGAGATGAGGATGTCCCTTGCACTGTCGG : GTCCATCTCACATACAAATATTCCTGGAAAATCAATAGTTTTACCTTTGCCACAG : GTATCTGAAATGCACGCCCGGATATCATGCAAAGACGGAGCATTTTTTGTAACTGATTTACGAAGTGAACATGGTACCTGGGTTACAGA : TAATGAAGGCAGAAGATATCGGACGTCTCCAAACTTCCCTACACGTTTTCATCCATCAGATGTTATCGAATTTGGTTCTGATAAGGTGAGATTCATCAAAGTATTTTCTCTTTAACGCAAAACTTTGGCATTAGCATTATTCTTTTAAACCGTCATGTGCAGGCAGCATTTCGTGTTAAAGCAATGAAATTTCCACTAAAAACTTCTGAAAGGAAGGAAGAGCGCGAAGCAGTGGAGGCAGCGTAAAGCTTGACCTGATATAAACAGGAAATTGTACAGCATTTTATAGCAAACATCAGGCGTTGAGCAATTTAAGCATAGTTAATTTTGTATACTGTAGGTTTTAGAAAAGATCCATAAACAAGACACCATGAAAGAAAATACAGAGATTCTCCTAAAGAAATCTGGAGAATGTCATGGACATTGTCTCTTATTCTACCATTGCTAAAAATATATTACTTCTCTATGT</gDNA_template>
            <first_frame> D  T  F  T  P  A  V  E  R  G  L  P  V  T  R  V  I  S  R  M  T  L  Q  Q  I  L  A  R  A  V  G  E  E  I  I  M  N  E  S  N  V  V  D  F  E  D  D  G  E  K  :  V  T  V  V  L  E  N  G  Q  R  F  T  G  D  L  L  V  G  A  D  G  I  R  S  K  :  V  R  T  N  L  F  G  P  S  E  A  T  Y  S  G  Y  T  C  Y  T  G  I  A  D  F  V  P  A  D  I  D  T  V  G :   Y  R  V  F  L  G  H  K  Q  Y  F  V  S  S  D  V  G  G  G  K  M  Q  W  Y  A  F  Y  N  E  P  A  G  G  A  D  A  P  N   : G  K  K  E  R  L  L  K  I  F  G  G  W  C  D  N  V  I  D  L  L  V  A  T  D  E  D  A  I  L  R  R  D  I  Y  D  R  P  P  T  F  S  W  G  R  G  R  V  T  L  L  G  D  S  V  H  A  M  Q  P  N  L  G  Q  G  G  C  M  A  I  E  :  D  S  Y  Q  L  A  L  E  L  E  K  A  C  S  R  S  A  E  S  G  S  P  V  D  I  I  S  S  L  R  S :   Y  E  S  A  R  K  L  R  V  G  V  I  H  G  L  A  R  M  A  A  I  M  A  S  T  Y  K  A  Y  L  G  V  G  L  G  P  L  S  :  F  L  T  Q  Y  R  I  P  H  P  G  R  V  G  G  R  V  F  I  D  L  G  M  P  L  M  L  S  W  V  L  G  G  N  G :   D  K  L  E  G  R  I  K  H  C  R  L  S  E  K  :  A  N  D  Q  L  R  K  W  F  E  D  D  D  A  L  E  R  A  T  D  A  E :   W  L  L  L  P  A  G  N  G  S  S  G  L  E  A  I  V  L  S  R  D  E  D  V  P  C  T  V  G :   S  I  S  H  T  N  I  P  G  K  S  I  V  L  P  L  P  Q  :  V  S  E  M  H  A  R  I  S  C  K  D  G  A  F  F  V  T  D  L  R  S  E  H  G  T  W  V  T  D :   N  E  G  R  R  Y  R  T  S  P  N  F  P  T  R  F  H  P  S  D  V  I  E  F  G  S  D  K  V  R  F  I  K  V  F  S  L  *  R  K  T  L  A  L  A  L  F  F  *  T  V  M  C  R  Q  H  F  V  L  K  Q  *  N  F  H  *  K  L  L  K  G  R  K  S  A  K  Q  W  R  Q  R  K  A  *  P  D  I  N  R  K  L  Y  S  I  L  *  Q  T  S  G  V  E  Q  F  K  H  S  *  F  C  I  L  *  V  L  E  K  I  H  K  Q  D  T  M  K  E  N  T  E  I  L  L  K  K  S  G  E  C  H  G  H  C  L  L  F  Y  H  C  *  K  Y  I  T  S  L  C </first_frame>
            <second_frame>  I  R  S  L  Q  Q  W  N  V  D  F  Q  *  Q  E  L  S  V  A  *  L  C  S  R  S  L  H  V  L  L  V  R  R  *  L  *  M  K  V  M  L  *  T  L  R  M  M  E  R  R :   L  L  W  F  L  R  M  D  N  D  L  Q  V  I  F  W  L  V  L  M  A  *  D  L  R :   Y  G  L  I  Y  S  D  P  V  K  L  L  T  L  A  T  L  V  I  L  E  L  Q  I  S  F  Q  L  I  L  I  Q  L   : G  T  A  S  F  W  A  T  N  S  T  L  F  L  Q  M  W  G  E  A  R  C  S  G  M  H  F  T  M  N  Q  L  V  V  R  M  P  Q  T  :  V  K  R  K  D  C  L  K  Y  L  G  D  G  V  T  M  L  *  T  Y  *  L  P  Q  M  K  M  Q  F  F  V  V  T  S  M  I  D  R  Q  P  L  V  G  E  E  V  V  L  H  C  L  G  T  P  S  M  P  C  S  L  I  W  V  K  G  D  A  W  P  *  R :   I  A  I  N  *  H  W  N  L  K  K  H  A  V  E  V  Q  S  L  E  A  L  W  I  S  S  H  L  *  G   : A  M  K  V  L  E  N  F  E  L  E  S  S  M  D  W  L  E  W  L  Q  S  W  H  L  L  T  R  L  I  L  A  S  D  L  V  H  Y  H :   F  *  R  S  I  E  Y  H  I  L  E  E  L  V  E  E  F  L  L  T  W  E  C  L  *  C  *  V  G  F  *  E  A  M   : G  T  S  L  K  A  E  *  N  I  A  G  Y  L  R  K :   Q  M  T  N  *  E  N  G  L  K  M  M  M  L  *  S  V  L  L  M  Q   : S  G  Y  F  Y  L  R  G  M  A  L  L  V  *  K  L  L  F  *  A  E  M  R  M  S  L  A  L  S   : G  P  S  H  I  Q  I  F  L  E  N  Q  *  F  Y  L  C  H  R :   Y  L  K  C  T  P  G  Y  H  A  K  T  E  H  F  L  *  L  I  Y  E  V  N  M  V  P  G  L  Q   : I  M  K  A  E  D  I  G  R  L  Q  T  S  L  H  V  F  I  H  Q  M  L  S  N  L  V  L  I  R  *  D  S  S  K  Y  F  L  F  N  A  K  L  W  H  *  H  Y  S  F  K  P  S  C  A  G  S  I  S  C  *  S  N  E  I  S  T  K  N  F  *  K  E  G  R  A  R  S  S  G  G  S  V  K  L  D  L  I  *  T  G  N  C  T  A  F  Y  S  K  H  Q  A  L  S  N  L  S  I  V  N  F  V  Y  C  R  F  *  K  R  S  I  N  K  T  P  *  K  K  I  Q  R  F  S  *  R  N  L  E  N  V  M  D  I  V  S  Y  S  T  I  A  K  N  I  L  L  L  Y   </second_frame>
            <third_frame>   Y  V  H  S  S  S  G  T  W  T  S  S  D  K  S  Y  Q  S  H  D  F  A  A  D  P  C  T  C  C  W  *  G  D  N  Y  E  *  K  *  C  C  R  L  *  G  *  W  R  E   : G  Y  C  G  S  *  E  W  T  T  I  Y  R  *  S  S  G  W  C  *  W  H  K  I  *   : G  T  D  *  F  I  R  T  Q  *  S  Y  L  L  W  L  H  L  L  Y  W  N  C  R  F  R  S  S  *  Y  *  Y  S  W  :  V  P  R  L  F  G  P  Q  T  V  L  C  F  F  R  C  G  G  R  Q  D  A  V  V  C  I  L  Q  *  T  S  W  W  C  G  C  P  K  R :   *  K  G  K  I  A  *  N  I  W  G  M  V  *  Q  C  Y  R  P  I  S  C  H  R  *  R  C  N  S  S  S  *  H  L  *  *  T  A  N  L  *  L  G  K  R  S  C  Y  I  A  W  G  L  R  P  C  H  A  A  *  F  G  S  R  G  M  H  G  H  R   : G  *  L  S  T  S  T  G  T  *  K  S  M  Q  S  K  C  R  V  W  K  P  C  G  Y  H  L  I  F  K  E  :  L  *  K  C  *  K  T  S  S  W  S  H  P  W  T  G  *  N  G  C  N  H  G  I  Y  L  Q  G  L  S  W  R  R  T  W  S  T  I   : I  F  D  A  V  *  N  T  T  S  W  K  S  W  W  K  S  F  Y  *  L  G  N  A  S  D  V  K  L  G  S  R  R  Q  W  :  G  Q  A  *  R  Q  N  K  T  L  Q  A  I  *  E   : S  K  *  P  I  E  K  M  V  *  R  *  *  C  F  R  A  C  Y  *  C  R  :  V  V  T  F  T  C  G  E  W  L  F  W  F  R  S  Y  C  F  K  Q  R  *  G  C  P  L  H  C  R  :  V  H  L  T  Y  K  Y  S  W  K  I  N  S  F  T  F  A  T   : G  I  *  N  A  R  P  D  I  M  Q  R  R  S  I  F  C  N  *  F  T  K  *  T  W  Y  L  G  Y  R  :  *  *  R  Q  K  I  S  D  V  S  K  L  P  Y  T  F  S  S  I  R  C  Y  R  I  W  F  *  *  G  E  I  H  Q  S  I  F  S  L  T  Q  N  F  G  I  S  I  I  L  L  N  R  H  V  Q  A  A  F  R  V  K  A  M  K  F  P  L  K  T  S  E  R  K  E  E  R  E  A  V  E  A  A  *  S  L  T  *  Y  K  Q  E  I  V  Q  H  F  I  A  N  I  R  R  *  A  I  *  A  *  L  I  L  Y  T  V  G  F  R  K  D  P  *  T  R  H  H  E  R  K  Y  R  D  S  P  K  E  I  W  R  M  S  W  T  L  S  L  I  L  P  L  L  K  I  Y  Y  F  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0104A12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50918" stop="51067"/>
                    <exon start="51221" stop="51295"/>
                    <exon start="51465" stop="51565"/>
                    <exon start="51681" stop="51796"/>
                    <exon start="52384" stop="52595"/>
                    <exon start="52749" stop="52840"/>
                    <exon start="53058" stop="53172"/>
                    <exon start="53274" stop="53377"/>
                    <exon start="53737" stop="53782"/>
                    <exon start="53893" stop="53957"/>
                    <exon start="54057" stop="54143"/>
                    <exon start="54459" stop="54513"/>
                    <exon start="54604" stop="54692"/>
                    <exon start="54784" stop="54898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTFTPAVERGLPVTRVISRMTLQQILARAVGEEIIMNESNVVDFEDDGEKVTVVLENGQRFTGDLLVGADGIRSKVRTNLFGPSEATYSGYTCYTGIADFVPADIDTVGYRVFLGHKQYFVSSDVGGGKMQWYAFYNEPAGGADAPNGKKERLLKIFGGWCDNVIDLLVATDEDAILRRDIYDRPPTFSWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDSYQLALELEKACSRSAESGSPVDIISSLRSYESARKLRVGVIHGLARMAAIMASTYKAYLGVGLGPLSFLTQYRIPHPGRVGGRVFIDLGMPLMLSWVLGGNGDKLEGRIKHCRLSEKANDQLRKWFEDDDALERATDAEWLLLPAGNGSSGLEAIVLSRDEDVPCTVGSISHTNIPGKSIVLPLPQVSEMHARISCKDGAFFVTDLRSEHGTWVTDNEGRRYRTSPNFPTRFHPSDVIEFGSDKVRFIKVFSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 76 chains have been computed
$ 
$ memory statistics:
$ 145760 bytes spliced alignments in total
$ 64 spliced alignments have been stored
$ 2277 bytes was the average size of a spliced alignment
$ 15432 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2204 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 86 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:42:53
-->
