<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:52:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445850" ref_strand="+" ref_description="SGN-E445850 [cSTA-19-E5]">
      <seq>ggaagagctgattgcagagaaaccacgtcaaaggaagtgaaattgtcaaacgttcatcttaatatacttagcaagctttctgattggaaagcagatggtaatggctccataccctgtccaccaaagcaatatgggggctgcagttcctcggtcttatcattgaaacgaatcttcaagatgaattgggtagcgaaactggtgaaaaatgttgaagaaatggttagtggatgtgaagtatgtgattctggcgatctagagaatacctctgaagggaagttgttccaggctgctcatagagagaatggggatgataatgttttgtaccatccattgtctgaagatattagaagtgaagggattgaggacttcagaaagcaatggagtagaggtaaacctgttatcatcaaggatatatatgatgtatcatcgatgtcaaactgggatcccattgagatatggagaggggtaagggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31" g_stop="506" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E445850" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31" e_stop="506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGCTGATTGCAGAGAAACCACATCAAAGGAAGTGAAATTGTCAAATGTTCATCTAAATATACTTAGCAAGCTTTCTGATTGGAAAGCAGATGGTAATGGCTCCATACCCTGTCCACCAAAGCAATATGGGGGCTGCAGTTCCTCGGTCTTATCATTGAAACGAATCTTCAAGATGAATTGGGTCGCGAAACTGGTGAAAAATGTTGAAGAAATGGTTAGTGGATGTAAAGTATGTGATTCTGGCGATCTAGAGAATATGTCTGAAGGGAAGTTGTTCCAAGCTGCTCATAGAGAAAATGGGGATGATAACATTTTGTACCATCCATTATCTGAAGATATTAGAAGTGAAGGGATCGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGAC</genome_strand>
        <mrna_strand>GGAAGAGCTGATTGCAGAGAAACCACGTCAAAGGAAGTGAAATTGTCAAACGTTCATCTTAATATACTTAGCAAGCTTTCTGATTGGAAAGCAGATGGTAATGGCTCCATACCCTGTCCACCAAAGCAATATGGGGGCTGCAGTTCCTCGGTCTTATCATTGAAACGAATCTTCAAGATGAATTGGGTAGCGAAACTGGTGAAAAATGTTGAAGAAATGGTTAGTGGATGTGAAGTATGTGATTCTGGCGATCTAGAGAATACCTCTGAAGGGAAGTTGTTCCAGGCTGCTCATAGAGAGAATGGGGATGATAATGTTTTGTACCATCCATTGTCTGAAGATATTAGAAGTGAAGGGATTGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCGATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342099" ref_strand="+" ref_description="SGN-E342099 [cTOF-10-E7]">
      <seq>ctgattgcagagaaaccacatcaaaggaagtgaaattgtcaaatgttcatctaaatatacttagcaagctttctgattggaaagcagatggtaatggctccataccctgtccaccaaagcaatatgggggctgcagttcctcggtcttatcattgaaacgaatcttcaagatgaattgggtcgcgaaactggtgaaaaatgttgaagaaatggttagtggatgtaaagtatgtgattctggcgatctagagaatatgtctgaagggaagttgttccaagctgctcatagagaaaatggggatgataacattttgtaccatccattatctgaagatattagaagtgaagggatcgaggacttcagaaagcaatggagtagaggtaaacctgttatcatcaaggatatatatgatgtatcatcaatgtcaaactgggatcccattgagatatggagaggggtaagggagacaacagaggagaaaacaaaagatgataacagaactgtgaaggccattgattgttttgatgggagtgagattgatattcagattggtcaatttatcagaggatactcagagggaagaattcatgagaatggttggccagaaatgctcaaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="1" stop="1144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38" g_stop="573" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="574" i_stop="758" i_length="185">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="759" g_stop="844" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="622" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E342099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38" e_stop="573"/>
          <exon e_start="759" e_stop="844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTGCAGAGAAACCACATCAAAGGAAGTGAAATTGTCAAATGTTCATCTAAATATACTTAGCAAGCTTTCTGATTGGAAAGCAGATGGTAATGGCTCCATACCCTGTCCACCAAAGCAATATGGGGGCTGCAGTTCCTCGGTCTTATCATTGAAACGAATCTTCAAGATGAATTGGGTCGCGAAACTGGTGAAAAATGTTGAAGAAATGGTTAGTGGATGTAAAGTATGTGATTCTGGCGATCTAGAGAATATGTCTGAAGGGAAGTTGTTCCAAGCTGCTCATAGAGAAAATGGGGATGATAACATTTTGTACCATCCATTATCTGAAGATATTAGAAGTGAAGGGATCGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGACAACAGAGGAGAAAACAAAAGATGATAACAGAACTGTGAAGGCCATTGATTGTTTTGATGGGAGTGAGGTTGGTACCAATTGTCTCTTGCTTACACTATTAGATCTAGTTTCAACTTTCTTTCGATTGACATATGTGGTTCATATCCCCTATTATATGTTATAACTACTGTGTCCATTTTCCGTGAAGTGGGCTCTTGGTTTCTTTTTATCTTTAGCTGATCATACCACCGTCTCGTGTTTATTGTTTTGCAGATTGATATTCAGATTGGTCAATTTATCAGAGGATACTCAGAGGGAAGAATTCATGAGAATGGTTGGCCAGAAATGCTCAAATTGAA</genome_strand>
        <mrna_strand>CTGATTGCAGAGAAACCACATCAAAGGAAGTGAAATTGTCAAATGTTCATCTAAATATACTTAGCAAGCTTTCTGATTGGAAAGCAGATGGTAATGGCTCCATACCCTGTCCACCAAAGCAATATGGGGGCTGCAGTTCCTCGGTCTTATCATTGAAACGAATCTTCAAGATGAATTGGGTCGCGAAACTGGTGAAAAATGTTGAAGAAATGGTTAGTGGATGTAAAGTATGTGATTCTGGCGATCTAGAGAATATGTCTGAAGGGAAGTTGTTCCAAGCTGCTCATAGAGAAAATGGGGATGATAACATTTTGTACCATCCATTATCTGAAGATATTAGAAGTGAAGGGATCGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGACAACAGAGGAGAAAACAAAAGATGATAACAGAACTGTGAAGGCCATTGATTGTTTTGATGGGAGTGAG.........................................................................................................................................................................................ATTGATATTCAGATTGGTCAATTTATCAGAGGATACTCAGAGGGAAGAATTCATGAGAATGGTTGGCCAGAAATGCTCAAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267959" ref_strand="+" ref_description="SGN-E267959 [cLEI-15-A21]">
      <seq>aagctgctcatagagaaaatggggatgataacattgggtaccatccattatctgaagatattagaagtgaacggatcgaggactttagaaagcaatggattataggtaaacctgttatcattaaggatatatatgatgtatcatcaatgtcaaactgggatcccattgagatatggagaggggtaagggagaccacagatgagaaaactaaatatgataacagaactgttaaggccattgattgttttgatgggagtgagattgatattcatattgatcaattcatcacaggatactcacacggaataattcatgagaatggatggccagaaatgctcaaattgaaagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="14" stop="1150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="314" g_stop="573" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="574" i_stop="758" i_length="185">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="759" g_stop="850" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="352" r_length="92" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E267959" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="314" e_stop="573"/>
          <exon e_start="759" e_stop="850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCTCATAGAGAAAATGGGGATGATAACATTTTGTACCATCCATTATCTGAAGATATTAGAAGTGAAGGGATCGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGACAACAGAGGAGAAAACAAAAGATGATAACAGAACTGTGAAGGCCATTGATTGTTTTGATGGGAGTGAGGTTGGTACCAATTGTCTCTTGCTTACACTATTAGATCTAGTTTCAACTTTCTTTCGATTGACATATGTGGTTCATATCCCCTATTATATGTTATAACTACTGTGTCCATTTTCCGTGAAGTGGGCTCTTGGTTTCTTTTTATCTTTAGCTGATCATACCACCGTCTCGTGTTTATTGTTTTGCAGATTGATATTCAGATTGGTCAATTTATCAGAGGATACTCAGAGGGAAGAATTCATGAGAATGGTTGGCCAGAAATGCTCAAATTGAAAGACTG</genome_strand>
        <mrna_strand>AAGCTGCTCATAGAGAAAATGGGGATGATAACATTGGGTACCATCCATTATCTGAAGATATTAGAAGTGAACGGATCGAGGACTTTAGAAAGCAATGGATTATAGGTAAACCTGTTATCATTAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGACCACAGATGAGAAAACTAAATATGATAACAGAACTGTTAAGGCCATTGATTGTTTTGATGGGAGTGAG.........................................................................................................................................................................................ATTGATATTCATATTGATCAATTCATCACAGGATACTCACACGGAATAATTCATGAGAATGGATGGCCAGAAATGCTCAAATTGAAAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272500" ref_strand="+" ref_description="SGN-E272500 [cLEM-19-P12]">
      <seq>ttccctgcagaatgatgttggtcctaagatctttctttcttatgggatgtatgaagaacttggtaaaggtgactcagtgaacaatctgcataccaacatgcgtgacctagtattccttttggttcatatcagtgaggtcaaactgaaaggttggcagaagacgaagataggaaagatgcagaaaatctttgctgaatctgatcacaaaggaatttctggcgatgcactaaatgtttcaagcgaaggggatttctccaaattctcgcctgttggcgatagaggggatggtcagtatgctgatacggattcaaatgccaatgaaatgttggtcgacccagagagcagagttacttcccagattggtgtagataacttgagtcatgaagatctgaatggttccagtctaaacagctccgacagtagtcattctggagctctttgggatgtcttccggaggcaggatgtgccgatgcttatcgagtatctaagatttcattggaagaaacacggagattcagaccatgtaacggatgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="680" stop="2864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="980" g_stop="1088" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1089" i_stop="2135" i_length="1047">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2136" g_stop="2564" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="538" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E272500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="980" e_stop="1088"/>
          <exon e_start="2136" e_stop="2564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGCAGAATGATGTTGGTCCTAAGATCTTTCTTTCTTATGGGATGTATGAAGAACTTGGTAAAGGTGACTCAGTGAACAATCTGCATACCAACATGCGTGACCTAGTGAGTGCCATAATTTCCTTCCCATGCCATCTGTGTCTTCCTATTGTCTTCATATGTTTGATACCTCAATTAGAGAGTTTCTTGTGTTTATCTGAAGTCGAGTCAGTTGATATGCAAAGTGACTTGAATTCCATTATGAGGATGCGTGCATTTTTACTTGGAAATATATTTGCAAATATAATCCTCAAGATGATTTATTTTTTCTGTAGAGTCTAAGATTTTTAGTTGACTGATCCACAAACAATTCGATTGTTTGGTCAATTTGGTATTGATAAGGCATTAACTTGATAACGGAAAAATACCTGATCCTGGCCTTAATGTGTACAAGTAATCAAGAACAAATATTAGTTTAGCTTCTCCTTTGCATGGTTCGGGAATGTGAATAGAAGGTGTGTACAAGCCCCAGTGAGGAGGTGTGAGAGGTTAAATGTCGTTGGCTTAAGGAGAGGCAGAGATATGCTGAAGTGTTGGGAAGAAATGATTAGGCAAGATATGAGTTATGACACAACTTCAGCTTACCGAGGATGTGACCTTAGAAAGGAGGTTATGGAGGTCACATATTAAGGTAGAAGCTTTGTAGGTTGTTGAGCATTGTCTCTCGTTTCCAGGAAGGATAGGCTTGGTGATATTGTGCACCGTACCTATTTCCCCATTTATACCAGCAGTTGTAGCATTTTTCTCGTATTTACCTGTCTTGTGATTTTTGTTGCTCATTATTTTTTGTGCTTCAGTTATCACATTCTTTGGTTATTGTTGTTGCTCTTGTTTTCTGAAAGTTATGTTATGCTTTCCCTATTATATGCTATGTCCTCTGTACGTCTGTATTTTCCTTTTAATTGCTTTGATGTGCTTTACTTGAGCCTAGGGTCTGTGCAAAACAGCCTTTCTACCTCCACGAGGTAGGGTTCAGTTATGTGTACACTCTACCCTCTCAAGATCCCGCTTATGGGACTACATTGGGTTTGTTGTTGTTGTTTGGTCTTAACAGTACAAATCCTGCTTTCATCTGATAAATAATTTAGGTTGCTGTCTCTTCTCTGTAATTAGGTATTCCTTTTGGTTCATATCAGTGAGGTCAAACTGAAAGGTTGGCAGAAGACGAAGATAGGAAAGATGCAGAAAATCTTTGCTGAATCTGATCACAAAGGAATTTCTGGCGATGCACTAAATGTTTCAAGCGAAGGGGATTTCTCCAAATTCTCGCCTGTTGGCGATAGAGGGGATGGTCAGTATGCTGATACGGATTCAAATGCCAATGAAATGTTGGTCGACCCAGAGAGCAGAGTTACTTCCCAGATTGGTGTAGATAACTTGAGTCATGAAGATCTGAATGGTTCCAGTCTAAACAGCTCCGACAGTAGTCATTCTGGAGCTCTTTGGGATGTCTTCCGGAGGCAGGATGTGCCGATGCTTATCGAGTATCTAAGATTTCATTGGAAGAAACACGGAGATTCAGACCATGTAACGGATGATTCT</genome_strand>
        <mrna_strand>TTCCCTGCAGAATGATGTTGGTCCTAAGATCTTTCTTTCTTATGGGATGTATGAAGAACTTGGTAAAGGTGACTCAGTGAACAATCTGCATACCAACATGCGTGACCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCTTTTGGTTCATATCAGTGAGGTCAAACTGAAAGGTTGGCAGAAGACGAAGATAGGAAAGATGCAGAAAATCTTTGCTGAATCTGATCACAAAGGAATTTCTGGCGATGCACTAAATGTTTCAAGCGAAGGGGATTTCTCCAAATTCTCGCCTGTTGGCGATAGAGGGGATGGTCAGTATGCTGATACGGATTCAAATGCCAATGAAATGTTGGTCGACCCAGAGAGCAGAGTTACTTCCCAGATTGGTGTAGATAACTTGAGTCATGAAGATCTGAATGGTTCCAGTCTAAACAGCTCCGACAGTAGTCATTCTGGAGCTCTTTGGGATGTCTTCCGGAGGCAGGATGTGCCGATGCTTATCGAGTATCTAAGATTTCATTGGAAGAAACACGGAGATTCAGACCATGTAACGGATGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577390" ref_strand="+" ref_description="SGN-E577390 [35305]">
      <seq>tggcgatgcactaaatgtttcaagcgaaggggatttctctaaattttcacctgttggcgatagaggggatggtcagtatgctgatacagattcaaatgccaatgaaatgttggtcgaccaagagagcagagttacttctcagactggtgtagataacttgagtcatgaagatctgaatggttccagtttaaacagctccgacagtagtcactctggagctctttgggatgtctttcggaggcaggatgtgccgatgcttatcgagtatttaagatttcattggaagaaacatggagattcgagaccatgtaacggatgattctgtgcccagtcctctttacgatggaatagtatatctgaatgagcatcataagggaaagttgaaagagttatttggaattgagccttggtcgtttgaacagcatttaggtgaagcaattttcattcctgctggctgtcctttccaagtgaggaatcttcagtccactgtccaattgggccttgattttctttctccagaaagtttaggtgaggctgttagaatggctgaagaaatccgtggccttcctaatactcatgatgcaaagctgcaaatgttggaggtgggaaaagatatcactctatgcagcaagctcagccatcaagagaagttcagaagttggttctggatctctaaagttggtcccgagcttggatttgaggatcccaaatttgaccgcattgggtgtcagaggaaatttggagaaatgatgaagagacgtcaggtaagcttgaacataaaccagtgcacacgaggtttgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="1943" stop="4915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2243" g_stop="2564" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2565" i_stop="2658" i_length="94">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2659" g_stop="2731" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="396" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2732" i_stop="3101" i_length="370">
            <donor d_prob="0.029" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3102" g_stop="3187" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="482" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610">
            <donor d_prob="0.584" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3798" g_stop="3917" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="602" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4000" g_stop="4070" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="676" r_length="74" r_score="0.901"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4493" g_stop="4615" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="804" r_length="128" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E577390" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2243" e_stop="2564"/>
          <exon e_start="2659" e_stop="2731"/>
          <exon e_start="3102" e_stop="3187"/>
          <exon e_start="3798" e_stop="3917"/>
          <exon e_start="4000" e_stop="4070"/>
          <exon e_start="4493" e_stop="4615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGATGCACTAAATGTTTCAAGCGAAGGGGATTTCTCCAAATTCTCGCCTGTTGGCGATAGAGGGGATGGTCAGTATGCTGATACGGATTCAAATGCCAATGAAATGTTGGTCGACCCAGAGAGCAGAGTTACTTCCCAGATTGGTGTAGATAACTTGAGTCATGAAGATCTGAATGGTTCCAGTCTAAACAGCTCCGACAGTAGTCATTCTGGAGCTCTTTGGGATGTCTTCCGGAGGCAGGATGTGCCGATGCTTATCGAGTATCTAAGATTTCATTGGAAGAAACACGGAGATTC-AGACCATGTAACGGATGATTCTGTAGGTTTACTTCTCAAATGCAATAACTTGTCCAAGTATTTCTCTCTATATATATTGAGGTCATAATATTTGCTTTCAACATTATTGGTCTCAGGTGCCAAGTCCTCTTTACGATGGAATAGTATATCTGAATGAGCATCATAAGAGAAAGTTGAAAGAGTTATTTGGTAAGACTAGTAGTTTGTCGTTGTTACTAAAGTTGCAATGTAAAAATCTCGTGTGCTGACATTCTGCCTTACAGTATCTTTCCAATTAGCTTTAAATTCTTAAACACTGTATGCGTATAACAAAATAAATACTTAACAATGCCTCAGAACTGATTCTGTCTAACTTCATGAAACTTTCCTTGAGTTCTTATTTTTTTGGAGCGGATTGTTCTGCTTTTAGTTCCCAACTTCAGGATATTTAATGAGGCCCTAAAACTAGACTCTGTGAGTGCCTGTCATCACCCCTAACATTTTCTTCTATGTTTTCTTGTTGCTCTCTTTTAGCTATACTGTCACAAAATGATTCCTTGATTGAAACTCTAATTCACAGGAATTGAGCCTTGGTCGTTTGAACAGCATTTAGGCGAAGCTATTTTCGTTCCTGCTGGTTGTCCTTTCCAAGTGAGGAATCTTCAGGTTAGTGGACGAGATGAATTTTATGAGTGGTTTGTAAACAACATAGGTTCTCCTCCTCCTCACATGCTCATAAAAGGAACACAATGCAACTGTTTCTCCTGAAAAGTTTTTTGGACACATGAAAGTCAACTATTGGATGGAAATTAAGCTTTGCTAAACCATCCACCCAATCTTGTAGGTTAAAAACCTTAAAAAGTACCTAGCTTAACTGCTGGAGAGGAAGGTCTCTTTTATTTTTATTCTTTTCACTAGATGGAGATATGTTCACCCAGTTAGAGATATGATATTCCTTCTAATCACTAGAGGGCTGCAGAATGTTTGTGTTTTTTCACTAGATATCTGTAATGTTCTGAAGAAATCCCCAAATGCTCCCCTCTTTCAGAACCAGTTCTCCAAGTCCTGGTCAGGTGTATAAGTGGCCCAGATGTTTGTAAAGGAAAGCTCCTGGTGATTTGCAGTCGAAGCTTTTTTTTAGTTAATACTTAATAGATACGTTAAGTTCCTCTTTGAAACCTTATTACTAGAGCCATTTAAGAAGATTTTAAACATAACCTTTTTTAGTGTGCGATTTAGAAAAGTTCTGCTGATTGCTCTTTCTGTTTTATTGCAGTCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGG-AAAGATATCACTTTATGCAGCAAGCTCAGCCATCAA-AGAAGTTCAGAAGTTGGTTCTGGATC-CTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTCACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCC-AATTTGACCGCATTGG-TGTCAGA-G-AATTTGGAGAAAATGATGAAGAGACGTCAGGT-ACCTTGAACATAAACCAGTGCAGA-GAGGTTTGTATC</genome_strand>
        <mrna_strand>TGGCGATGCACTAAATGTTTCAAGCGAAGGGGATTTCTCTAAATTTTCACCTGTTGGCGATAGAGGGGATGGTCAGTATGCTGATACAGATTCAAATGCCAATGAAATGTTGGTCGACCAAGAGAGCAGAGTTACTTCTCAGACTGGTGTAGATAACTTGAGTCATGAAGATCTGAATGGTTCCAGTTTAAACAGCTCCGACAGTAGTCACTCTGGAGCTCTTTGGGATGTCTTTCGGAGGCAGGATGTGCCGATGCTTATCGAGTATTTAAGATTTCATTGGAAGAAACATGGAGATTCGAGACCATGTAACGGATGATTCT..............................................................................................GTGCCCAGTCCTCTTTACGATGGAATAGTATATCTGAATGAGCATCATAAGGGAAAGTTGAAAGAGTTATTTG..................................................................................................................................................................................................................................................................................................................................................................................GAATTGAGCCTTGGTCGTTTGAACAGCATTTAGGTGAAGCAATTTTCATTCCTGCTGGCTGTCCTTTCCAAGTGAGGAATCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGTTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCAAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAAGATATCACTCTATGCAGCAAGCTCAGCCATCAAGAGAAGTTCAGAAGTTGGTTCTGGATCTCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTCCCGAGCTTGGATTTGAGGATCCCAAATTTGACCGCATTGGGTGTCAGAGGAAATTTGGAG-AAATGATGAAGAGACGTCAGGTAAGCTTGAACATAAACCAGTGCACACGAGGTTTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389869" ref_strand="+" ref_description="SGN-E389869 [TUS-4-J8]">
      <seq>tcctttccaagtgaggaatcttcagtccactgtccaattgggccttgattttctttctccagaaagcttaggtgaggctgttagaatggctgaagaaatccgtggccttcctaatactcatgatgcgaagctgcaaatgttggaggtgggaaagatatcactttatgcagcaagctcagccatcaaagaagttcagaagttggttctggatcctaaagttggtcctgagcttggatttgaggatcccaatttgaccgcattggtgtcagagaatttggagaaaatgatgaagagacgtcaggtaccttgaacataaaccagtgcagagaggtttgtatccgagtatgtctgaattcatatgtacagaagaaacagcaaaacccctagggaatgtgcatcggagtacttgattttgttctgctaaatgctagaacgctctcaggggatgtgcattgttaccgcttactttggtctcccataatctcataggttgtagcctgtgatatctatctatctattatcttatgaagaaatcaacagctgtgtgctcccatagtcttgtagtagaagatatcaataggtcttattgtaattgtaatttcataggtggaatgaaacatcnnattcagatatcattttttgatagatattcaaggttaacaatcctatgtagccttcatatgattatataaaaagcttctttcttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="2863" stop="50320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3163" g_stop="3187" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3798" g_stop="3917" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4070" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="216" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4493" g_stop="4985" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="709" r_length="493" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4986" i_stop="5164" i_length="179">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.504" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5165" g_stop="5178" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="723" r_length="14" r_score="0.643"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5179" i_stop="5474" i_length="296">
            <donor d_prob="0.521" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5475" g_stop="5481" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="730" r_length="7" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E389869" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3163" e_stop="3187"/>
          <exon e_start="3798" e_stop="3917"/>
          <exon e_start="4000" e_stop="4070"/>
          <exon e_start="4493" e_stop="4985"/>
          <exon e_start="5165" e_stop="5178"/>
          <exon e_start="5475" e_stop="5481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCCAAGTGAGGAATCTTCAGGTTAGTGGACGAGATGAATTTTATGAGTGGTTTGTAAACAACATAGGTTCTCCTCCTCCTCACATGCTCATAAAAGGAACACAATGCAACTGTTTCTCCTGAAAAGTTTTTTGGACACATGAAAGTCAACTATTGGATGGAAATTAAGCTTTGCTAAACCATCCACCCAATCTTGTAGGTTAAAAACCTTAAAAAGTACCTAGCTTAACTGCTGGAGAGGAAGGTCTCTTTTATTTTTATTCTTTTCACTAGATGGAGATATGTTCACCCAGTTAGAGATATGATATTCCTTCTAATCACTAGAGGGCTGCAGAATGTTTGTGTTTTTTCACTAGATATCTGTAATGTTCTGAAGAAATCCCCAAATGCTCCCCTCTTTCAGAACCAGTTCTCCAAGTCCTGGTCAGGTGTATAAGTGGCCCAGATGTTTGTAAAGGAAAGCTCCTGGTGATTTGCAGTCGAAGCTTTTTTTTAGTTAATACTTAATAGATACGTTAAGTTCCTCTTTGAAACCTTATTACTAGAGCCATTTAAGAAGATTTTAAACATAACCTTTTTTAGTGTGCGATTTAGAAAAGTTCTGCTGATTGCTCTTTCTGTTTTATTGCAGTCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTCACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATC-AATTCAAGATATCATTTTTTGATAGATATTCAAGGTTAACAATCCTATGTAGCCTTCATATGATTATATAAAAAGCTTCTTTCTTTTAGTTTACTCTCATCTTATTTTTCTTTTTTATTTTTGGGGTGGGAAAGTGAGTTTTTCTTTTTCTTTCATGGGAGAATAAATTGTGCTCCAATAGTGTATACATGGTTGACAAAAGTTTATGAAGGAAAATTCATTTTGTAATTACAACAAATGAACACTTGTAATCCACATCTTGAGTAGGAGAAAGACAAAAGGCAATCAATTCCTTTTGGAGTAATTTCGATTTCTTTGTGATTTTGACATTGTCTGTTTTGTACCTTTCATTTCTTTGGTGCTTCTACATGATTTTCAATCGTCTGGTTATAAGTCACTCTGAAAAATAAATCTTTTCCTTCCAAAAAAAAAACACACACACACTAATTTAATGGAAAATTATGACGTTTCTAACAAATATATATAACAAAAATGATGCAAAAATTCACAAGTCAATGTAAGTAATCTCATATTAAGATTACTTTGTTTTTTCTTTTTCTTGTCCAATTTTATTTAGGGCAAAG</genome_strand>
        <mrna_strand>TCCTTTCCAAGTGAGGAATCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCNNATTC-AGATATCATTTTTTGATAGATATTCAAGGTTAACAATCCTATGTAGCCTTCATATGATTATATAAAAAGCTTCTTTCTTTTA...................................................................................................................................................................................AAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550045" ref_strand="+" ref_description="SGN-E550045 [TUS-5-J8]">
      <seq>tcctttccaagtgaggaatcttcagtccactgtccaattgggccttgatcttctttctccagaaagcttaggtgaggctgttagaatggctgaagaaatccgtggccttcctaatactcatgatgcgaagctgcaaatgttggaggtgggaaagatatcactttatgcagcaagctcagccatcaaagaagttcagaagttggttctggatcctaaagttggtcctgagcttggatttgaggatcccaatttgaccgcattggtgtcagagaatttggagaaaatgatgaagagacgtcaggtaccttgaacataaaccagtgcagagaggtttgtatccgagtatgtctgaattcatatgtacagaagaaacagcaaaacccctagggaatgtgcatcggagtacttgattttgttctgctaaatgctagaacgctctcaggggatgtgcattgttaccgcttactttggtctcccataatctcataggttgtagcctgtgatatctatctatctattatcttatgaagaaatcaacagctgtgtgctcccatagtcttgtagtagaagatatcataggggctttattgtaattgtaatttcataggtggaatgaaacatcaattcaagatatcattttttgatagaatattcaggttaacaatcctatgtagccttcatatgattatataaaaagcttctttctttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="2863" stop="5284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3163" g_stop="3187" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3798" g_stop="3917" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4070" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="216" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4493" g_stop="4985" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="710" r_length="494" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E550045" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3163" e_stop="3187"/>
          <exon e_start="3798" e_stop="3917"/>
          <exon e_start="4000" e_stop="4070"/>
          <exon e_start="4493" e_stop="4985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCCAAGTGAGGAATCTTCAGGTTAGTGGACGAGATGAATTTTATGAGTGGTTTGTAAACAACATAGGTTCTCCTCCTCCTCACATGCTCATAAAAGGAACACAATGCAACTGTTTCTCCTGAAAAGTTTTTTGGACACATGAAAGTCAACTATTGGATGGAAATTAAGCTTTGCTAAACCATCCACCCAATCTTGTAGGTTAAAAACCTTAAAAAGTACCTAGCTTAACTGCTGGAGAGGAAGGTCTCTTTTATTTTTATTCTTTTCACTAGATGGAGATATGTTCACCCAGTTAGAGATATGATATTCCTTCTAATCACTAGAGGGCTGCAGAATGTTTGTGTTTTTTCACTAGATATCTGTAATGTTCTGAAGAAATCCCCAAATGCTCCCCTCTTTCAGAACCAGTTCTCCAAGTCCTGGTCAGGTGTATAAGTGGCCCAGATGTTTGTAAAGGAAAGCTCCTGGTGATTTGCAGTCGAAGCTTTTTTTTAGTTAATACTTAATAGATACGTTAAGTTCCTCTTTGAAACCTTATTACTAGAGCCATTTAAGAAGATTTTAAACATAACCTTTTTTAGTGTGCGATTTAGAAAAGTTCTGCTGATTGCTCTTTCTGTTTTATTGCAGTCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTCACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCA-ATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCAATTCAAGATATCATTTTTTGATAG-ATATTCAAGGTTAACAATCCTATGTAGCCTTCATATGATTATATAAAAAGCTTCTTTCTTTTA</genome_strand>
        <mrna_strand>TCCTTTCCAAGTGAGGAATCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCAATTGGGCCTTGATCTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCATAGGGGCTTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCAATTCAAGATATCATTTTTTGATAGAATATTC-AGGTTAACAATCCTATGTAGCCTTCATATGATTATATAAAAAGCTTCTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389612" ref_strand="+" ref_description="SGN-E389612 [TUS-4-J8](-)">
      <seq>tccttcccaagtgaggaatcttcagtccactgtccaattgggccttgattttctttctccagaaagcttaggtgaggctgttagaatggctgaagaaatccgtggccttcctaatactcatgatgcgaagctgcaaatgttggaggtgggaaagatatcactttatgcagcaagctcagccatcaaagaagttcagaagttggttctggatcctaaagttggtcctgagcttggatttgaggatcccaatttgaccgcattggtgtcagagaatttggagaaaatgatgaagagacgtcaggtaccttgaacataaaccagtgcagagaggtttgtatccgagtaagtctgaattcatatgtacagaagaaacagcaaaacccctagggaatgtgcatcggagtacttgattttgttctgctaaatgctagaacgctctcaggggatgtgcattgttaccgcttactttggtctcccataatctcataggttgtagcctgtgatatctatctatctattatcttatgaagaaatcaacagctgtgtgctcccatagttttgtagtagaagatgtcaaaagatcttattgtaattgtaatttcataggtggaatgaaacatcaattcaagatagaattttttgatagatattctcggttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="2863" stop="5238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3163" g_stop="3187" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3798" g_stop="3917" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="145" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4070" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="216" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4493" g_stop="4938" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="662" r_length="446" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E389612" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3163" e_stop="3187"/>
          <exon e_start="3798" e_stop="3917"/>
          <exon e_start="4000" e_stop="4070"/>
          <exon e_start="4493" e_stop="4938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTCCAAGTGAGGAATCTTCAGGTTAGTGGACGAGATGAATTTTATGAGTGGTTTGTAAACAACATAGGTTCTCCTCCTCCTCACATGCTCATAAAAGGAACACAATGCAACTGTTTCTCCTGAAAAGTTTTTTGGACACATGAAAGTCAACTATTGGATGGAAATTAAGCTTTGCTAAACCATCCACCCAATCTTGTAGGTTAAAAACCTTAAAAAGTACCTAGCTTAACTGCTGGAGAGGAAGGTCTCTTTTATTTTTATTCTTTTCACTAGATGGAGATATGTTCACCCAGTTAGAGATATGATATTCCTTCTAATCACTAGAGGGCTGCAGAATGTTTGTGTTTTTTCACTAGATATCTGTAATGTTCTGAAGAAATCCCCAAATGCTCCCCTCTTTCAGAACCAGTTCTCCAAGTCCTGGTCAGGTGTATAAGTGGCCCAGATGTTTGTAAAGGAAAGCTCCTGGTGATTTGCAGTCGAAGCTTTTTTTTAGTTAATACTTAATAGATACGTTAAGTTCCTCTTTGAAACCTTATTACTAGAGCCATTTAAGAAGATTTTAAACATAACCTTTTTTAGTGTGCGATTTAGAAAAGTTCTGCTGATTGCTCTTTCTGTTTTATTGCAGTCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTCACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCAATTCAAGATATCATTTTTTGATAGATATTCAAGGTTAACA</genome_strand>
        <mrna_strand>TCCTTCCCAAGTGAGGAATCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTAAGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTTTTGTAGTAGAAGATGTCAAAAGATCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCAATTCAAGATAGAATTTTTTGATAGATATTCTCGGTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236408" ref_strand="+" ref_description="SGN-E236408 [cLED-13-M22]">
      <seq>cctttccaagtgaggaatcttcagtccactgtccaattgggccttgattttctttctccagaaagcttaggtgaggctgttagaatggctgaagaaatccgtggccttcctaatactcatgatgcgaagctgcaaatgttggaggtgggaaagatatcactttatgcagcaagctcagccatcaaagaagttcagaagttggttctggatcctaaagttggtcctgagcttggatttgaggatcccaatttgaccgcattggtgtcagagaatttggagaaaatgatgaagagacgtcaggtaccttgaacataaaccagtgcagagaggtttgtatccgagtatgtctgaattcatatgtacagaagaaacagcaaaacccctagggaatgtgcatcggagtacttgattttgttctgctaaatgctagaacgctctcaggggatgtgcattgttaccgcttactttggtctcccataatctcataggttgtagcctgtgatatctatctatctattatcttatgaagaaatcaacagctgtgtgctcccataatcttgtagtagaagatatcaataggtcttattgtaattgtaatttcataggtggaatgaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="2864" stop="5197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3164" g_stop="3187" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610">
            <donor d_prob="0.584" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3798" g_stop="3917" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="144" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4000" g_stop="4070" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="215" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4493" g_stop="4897" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="620" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E236408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3164" e_stop="3187"/>
          <exon e_start="3798" e_stop="3917"/>
          <exon e_start="4000" e_stop="4070"/>
          <exon e_start="4493" e_stop="4897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCCAAGTGAGGAATCTTCAGGTTAGTGGACGAGATGAATTTTATGAGTGGTTTGTAAACAACATAGGTTCTCCTCCTCCTCACATGCTCATAAAAGGAACACAATGCAACTGTTTCTCCTGAAAAGTTTTTTGGACACATGAAAGTCAACTATTGGATGGAAATTAAGCTTTGCTAAACCATCCACCCAATCTTGTAGGTTAAAAACCTTAAAAAGTACCTAGCTTAACTGCTGGAGAGGAAGGTCTCTTTTATTTTTATTCTTTTCACTAGATGGAGATATGTTCACCCAGTTAGAGATATGATATTCCTTCTAATCACTAGAGGGCTGCAGAATGTTTGTGTTTTTTCACTAGATATCTGTAATGTTCTGAAGAAATCCCCAAATGCTCCCCTCTTTCAGAACCAGTTCTCCAAGTCCTGGTCAGGTGTATAAGTGGCCCAGATGTTTGTAAAGGAAAGCTCCTGGTGATTTGCAGTCGAAGCTTTTTTTTAGTTAATACTTAATAGATACGTTAAGTTCCTCTTTGAAACCTTATTACTAGAGCCATTTAAGAAGATTTTAAACATAACCTTTTTTAGTGTGCGATTTAGAAAAGTTCTGCTGATTGCTCTTTCTGTTTTATTGCAGTCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTCACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATC</genome_strand>
        <mrna_strand>CCTTTCCAAGTGAGGAATCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAATCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609668" ref_strand="+" ref_description="SGN-E609668 [25681]">
      <seq>ttctccagaaagttaggtgaggctgttagaatggctgaagaattccgtggccttcctaatactcatgatgcaaagctgcaaatgttggaggtgggaaagatatcactctatgcagcaagctcagccatcaaagaagttcagaagttggttctggatcctaagtaagctgttttgcatgttattctatctttatggctttctctctacttccttgtaagatatggatgtctatgacatttcttatgtagaggttctaggttgaggtagaaaaactatattgacttatttaataaatcctactgctgagctatgtgtctgtcaaagttggggctggtctcgactacttataccatttagaggcttctaaaggcctctttggttaatttcaacaggaatgtaccgtaaaaatccaaatgttatgatccttccctgagttgtttctccgagtgttataggcatggatccgtttgctttgcttcttctgtttctgatgagttcatttactatagcgtttccttgtgtaattgtgtgtgcagagttggtcccgagcttggatttgaggatcccaatttgaccgcattggtgtcagagaatttggagaaaaatgatgaagagacgtcaggtagctggaacataaaccagtgcacagaggtttgtatccgagtatctctgaatccatatgtaccgaagaaacagcaaaccataaggaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="3527" stop="4958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3827" g_stop="3917" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4000" g_stop="4383" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="475" r_length="385" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4384" i_stop="4433" i_length="50">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.79"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4434" g_stop="4671" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="714" r_length="239" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E609668" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3827" e_stop="3917"/>
          <exon e_start="4000" e_stop="4383"/>
          <exon e_start="4434" e_stop="4671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAGGTCTGTGTAGTGATTCTTATTCTTTTCCTACCTCAGCTTCATTGGATTGGCATTCTTAACTTTATGCATTCATTTAATACAGGTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGC-TTCTCTATACTTCCTTGTAAGATA-GGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGT-AAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTGGTTACAAAATTTTTAAAACGTAAGCGAAGGTGGAAAGAGAGGGATTTTTTC-AC-TCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAG-AAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTG</genome_strand>
        <mrna_strand>TTCTCCAGAAAG-TTAGGTGAGGCTGTTAGAATGGCTGAAGAATTCCGTGGCCTTCCTAATACTCATGATGCAAAGCTGCAAATGTTGGAG..................................................................................GTGGGAAAGATATCACTCTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTATCTTTATGGCTTTCTCTCTACTTCCTTGTAAGATATGGATGTCTATGACATTTCTTATGTAGAGGTTCTAGGTTGA--GGTAGAAAAACTATATTGACTTATTTAATAAATCCTACTGCTGAGCTATGTGTCTGTCAAAGTTGGGGCTGGTCTCGACTACTTATACCATTTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACCGTAAAAATCCAAATGTTATGATCCTTCCCTGAGTTGTTTCTCCGAGTGTTATAGGCATGGATCCGTTTGCTTTG..................................................CTTCTTCTGTTTCTGATGAGTTCATTTACTATAGCGTTTCCTTGTGTAATTGTGTGTGCAGAGTTGGTCCCGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAAATGATGAAGAGACGTCAGGTAGCTGGAACATAAACCAGTGCACAGAGGTTTGTATCCGAGTATCTCTGAATCCATATGTACCGAAGAAACAGC-AAA-CCATAAGGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738891" ref_strand="+" ref_description="SGN-E738891 [LC15BC12]">
      <seq>cgccttttgatttccctttttagctttttcacttttcttcaacaaaatttgattcctaactttctctgtagattttgcactcactctcccttcctttcttcccctctctgtcatccacaatcggaagtttttcttctctctgttgacgacggacggtgacttttgtcggtgcttcttatcttatgctttgttgttttccggcgagttatccgatttgcggtgcagaatggctaatcgtggctacaaattgcaggaatttgtggcgcattcggggaatgtaaactgtttaaggtttgggaagaagacgcgtagacagtttctcactggtggagatgatcagaatgtgaatctttggtccattggtaaaccaacatccaccacgagcctaagtgggcatactagtccaatagaatctgtagcttttgactcagcagaggttctagtgcttgctggagcttcatcaggtgtaataaagctatgggatctggaagaaacaaaaatggttcgcactcttacgggacacagatcatattgcactgcctgtgaattccatccttttggtgaattttttgcatctggatctatggatactaatcttaagatatgggatataagaaaaaaaggatgcatccacacatacaaaggtcatactcgaagaataagtaccatacgattctcccctgatggccgctgggtggtttctggcagatttgacaatgtttgtgaaggtatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="13984" stop="19776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14274" g_stop="14524" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15066" g_stop="15196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="382" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15874" g_stop="15991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="500" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19247" g_stop="19473" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="728" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19474" i_stop="19552" i_length="79">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.787" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19553" g_stop="19559" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="735" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E738891" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14274" e_stop="14524"/>
          <exon e_start="15066" e_stop="15196"/>
          <exon e_start="15874" e_stop="15991"/>
          <exon e_start="19247" e_stop="19473"/>
          <exon e_start="19553" e_stop="19559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCCCTTTCCCTTTTTAGCTTTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGCGTATCCTTTTTTTGAATTTTGCTATTCGTTCTATTTATTTTACTTAAATGTGCGTTAAGTTTGAATTTTACTGTGTTGTTATGTTTTCTGTTTGATCTGGGAGTGTTCTATAGAATCTTATAGTTAGCTGCTGAAAATCGAAGTAGGATTTTAGTAACTTAGATAGAAAAAAAAATTGAATTTGATTAGGATTTAGAGAATTTTGTTGGAGTGAGCTGAATAGTTGGATTTTTCTGGTATGATTTACTTTTTGTGCTTTTTTTGGTTTTATTAGTTTTTAGATTTAGCTAAGAGTTGGTGTTGTAGGTGAGTTTTTTGAGGTTTAATGTGTGATGTTGTTTTTAAGTTAAAGTATGTGGAGAAGTGACGAGGGTTGCTCGGATGGTAAACACCTTCTACCTCCAATTATAAGGTTGTGGGTTCGAGTCGCGGGGGAGAAAAAAGGTGGGATTTTTCTGGGAGGGGTTAAAAAAAAGTTGTGTGGAGAAGTATTTAATTTCAGCAATAATTTCTTGTGATTCTTGACTAATGTGAAATATAGAGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACGGTGAGTTCAAATATCTATTCTTTCCAGTTCTCTTGCATGAGTAATGTTGTTATGCTTTATTGGGATAATTGATTTAGTTTCACAATGAGATCTTTCTTTTTCTGTTAACGTTTAATTCAAATGTAAATGCATTAAATGAGTGATCTATTATGATTATGCCTTCTATGCGGGAAGAGCTGCTGCTGCTGCTTTTGTTGTTGGAGCTTTCTCTAGATAATTAGAGTGGGTGAGGATTGAGGAATGAGGTTTGATGTGCATTTTGGATGTGGTAGAGAATTTGTAAAGTTGTTAATGCTGCCACTTAGATATAAGTGAGGTTATGTTATCATTGTTTCTTTATTGGTGCCTTATAAGAATCTTTACCACTTGAAATACCAGACTGCTGTGGTTCTTTTGGATGATCTGAAACAGGTAACACGTGGATCGTATATTTCAAAATATTATGGTTTATTAATCTAACTAATGTGTTTAGTTGCAACCTTTGGTATGATAAAGAATACAAATATGTGGAAACTGTAAACCTTACGAGTATCGAGTGATGGGTCATTCATCTCTATGAATGCATGAAATTATTTGTTGATTCCCTGTGTTGCAAAGAGCTGACTGCTACATGTTTTTATTTATCTTGAATCACTTTAGTCATATGGGACTGAATAGTCTGGTTTTGTGCTGTTCAGAGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAAGTAAGTCGATTTATCTTTTTAGCTCTATATATTCTATAAAATGAATACTAGCTTTACTCTTAAAGAATTGCAGCGAAAGTGCTCGCAATACATTCTAAGAATGTGCTCACAATTTTTATTTTATTACATTGCTGCTTTATCCTCTTAAGCATGTGTCCTATTTATTAAATGTTGGTCTTACCTGTGAACTTCTAGCTACGAGAAAGCATCGCCTGAAGTTTCCTCAGCCTGTTGGCTTGATTATTTTGGTGTAAATGAGCTAAGTGTAGTCTTAACTGTAGTATATGTCTTTTTACATAAAAACGGCTAGTTGATTTTATTCCTCGTGCAAAGAAAGTTAACTGCTTCACTATAGTATGATGTACAGTTAATTGCAATTAACACTTACTGCATGGTCATGCATTCATTAACCAACTCCGTATGTAACTGAAAGAGCATCTTTGGATCTTCAGTTACACAAGAAACTTGCTTTATGATTTCAAGATTGACTCCAAGGGCGGATCTGTGTGAAGGCGTACTCCCTCACCGGGAAAATGCACTGTATATCTAAGGTCAAATTTGAATTTTATGAGTATATGTGTTATAATGAACCCCCTTGATGAGTTAAGAAACTTAGCTTAGAAGTTAAGGGGGTTCAACCATTCCCTGGGTCTCTGGTTCTATTCTTGCCCACTGCATTTCTTTTTCCCCTTGTTTTTGCTTTGACTTTCCTCGCAGATTGGGCTCAGCTTGCAGCTGTTTGGGCCTTAAACTCCAACCCAATTGGAAAGCCTCATTATTTTTGGGCTCCATTGGAAACTTTATGCTTCCTACTTTTTTGTTATTTTTCTCTTTTATTATATTTCTCCTACTCAATCTTTGGTTCCAATCTGTTAGGCACACTATTTTTGCCTTTTATTCTTCTTGTCTCTATTGCTCATTTTGTTTCTACATAAAAAAAACCCTTTTATGAACTAATTCCAGGGAACTCTTCTAAAAAATGATGAGTTATTGTTGAACTTGCAATTGAGATAGAAAACTATTTTTTAAAGAAAGGTAAAATTAAGAAATTTAAAAGTTGTGGAGATTCTTTTAACAATATCTATTTAATTGAACTTACTTTTTTTGTTTTTTTGGTATTTCTTTCCTATTTTTTCAATTGTATTTTCGATAGAGGAAAACCGAATTACACTAATTTAAATGAACTAAAAATGACGTTTATTTGACTTCTGAATCTGTATTATAGTATTAGTAACTCATTCCTTACACCTTTTTAAAGAATCTTGACGATATTCAAAGTAATTTATGATTGAATGGACACTAATTTGGAATATTTAAAAAATAAAGTAGAATTCTAGGAGGTGCGACAGGCACTTTGCCATCAATATACTTGGGCATGCCCCTGGAAGTTAATCTAACTTTGATCAACTCAGCTTTAGATGCCCTCCCTACGTGTATGTTATCTCTCTTCCATATACCCCAGTCAAAGGTTGGATAAAATCAGAAGAAACTTCTTGTGGCAAGGCAATAACGAAAGGAAGGGTTTTCATTTGGTCAAATGGAAGAACATTATCAGAAGTAAAGAACAAGGTGGACTAGGTATCAAGAACCTTAAATACCAGAGCAAAGCACTCAAGGTCAAGTGGCTATGGAAGTACCATCAGGAGGACCAAGCCCTCTGGTACAGGGTAATCAGGAGCAAGTATGAGCTACTGAACACATGGGTAACTAAAGAGGTCAAAACCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTTCTCAATAATCAAGTAATCAATTAACTGTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATATATGGGTGGGTACTGTGAGCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTCCTCAGTAATCAATTAACTCTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATAAATGGGTGGGTACTGTGAGTCTTAAAGATCTCTTTCCTGACATCTTTGTTTTGGCTCAACAACAAAAGAAAACTGTTGCTGAAATGTGGTCACCACAAGGATGGAATATGATCTTTAGAAGAAACTTGAATGACTGGGAAATTCCCAGAATGATTGAACTTTTCAAACTACTGGAGAGTTTCCAAGGAATCCAACCAGGTGAAGGCTATTTATGGTGGCATGGGCGCAACAAAGGAAGATACAGGCTGAAGGAAGGATATAAACAAACTAGTCTTATGGAGAACCAAGACTTCAAATGGCCATGGGAGCAAATCTGGAGAGTCAAAGTGCCACAAAAAGTGGCATGCTTCACCTGGATGCTAGCCAATGAAGCAGTCCTGACATTGGACAATGTGGCCAAGAGGCATATCTCTATGCAACAGATGCTCCTTATGTGGTAAGGGTACAGAAACAGTAAAACACCTCTTCCTACACTGCAATTTCACTGACCAACTGTGGCAGATTTTCCTTGATCTCAGAGGCATTTCCTGGAGTATGCCTAGTAAGATTGATGAGACTCTTTTCAGTTGGGAGGAGGCTGAAGTTGGGGCTACAAACAGAGAAAGATGGAGGATGATCCCTGCTTGTATATGGTAGAGTATATGGAGAGAGAGAAATGATAGATGTTATGAAATAGGGACAACAACCTGCAGGAAGTCGAGCTTAAATGTATTTTGTTGTTCTGTTTTTGTTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAATCTTTTTCTTCTTTTTGTAAATATGGTTTTTCAGTACTAAAGTAGTACTGACTGATATACAAATAGTACTAGTGTCAAAAAATTAAAGTAGAACATTGTGAAGTAAAAGAAAAGAAGTATCAGAAATTTCAATAAGGCTTGATGGAGCAAGGAAAAAGTAGGACAAACACTAAATGGGGAATGAAAAGATAAGTTAATTTATTGGGTTAAGGTTAGTCTTTTCCTTTCCCACTTTGCTCCATTTTTCATTTTGTAATTCGTGCGTGTTTGCTTCTTCACACTTCGAACCTCCTTTAGTGAAAAATCCTGCCTTTGCCATTGATTGACACTAGTTATATTTAACTGAACATCCTTCAAGTGTTTGAATTATCTGCGTGTTAAACAAAATATGTAATCCTATTGTGCTTAAATGAGCAAGTCATATCCAGCTTGACTCCTAATCCGGTAATTGTTCTTGAAGTGTAGTGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATG-TTGTGAAGGTAATTCCTAAGTTGGCTAAAAAAATGTGGCATTATAGACTCTTTTTTTTCTTGAGTATTAACCTCTATTGGTAGTCAGGTATGGG</genome_strand>
        <mrna_strand>CGCCTTTTGATTTCCCTTTTTAGCTTTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGTGGGCATACTAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAAGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCAGATTTGACAATGTTTGTGAAG...............................................................................GTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737823" ref_strand="+" ref_description="SGN-E737823 [LC11BD09]">
      <seq>ctcttcccctttccctttttagctttttcatttttcttcaacaaaatttgattcctaactttctctgtagattttgcactcactctcccttcctttcttcccctctctgtcatccacaatcggaagtttttcttctctctgttgacgacggacggtgacttttgtcggtgcttcttatcttatgctttgttgttttccggcgagttatccgatttgcggtgcagaatggctaatcgtggctacaaattgcaggaatttgtggcgcattcggggaatgtaaactgtttaaggtttgggaagaagacgcgtagacagtttctcactggtggagatgatcagaatgtgaatctttggtccattggtaaaccaacatccaccacgagcctaagtgggcatacgagtccaatagaatctgtagcttttgactcagcagaggttctagtgcttgctggagcttcatcaggtgtaataaagctatgggatctggaagaaacaaaaatggttcgcactcttacgggacacagatcatattgcactgcctgtgaattccatccttttggtgaattttttgcatctggatctatggatactaatcttaagatatgggatataagaaaaaaaggatgcatccacacatacaaaggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="13975" stop="19695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14275" g_stop="14524" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15066" g_stop="15196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="381" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15874" g_stop="15991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="499" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19247" g_stop="19395" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="648" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E737823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14275" e_stop="14524"/>
          <exon e_start="15066" e_stop="15196"/>
          <exon e_start="15874" e_stop="15991"/>
          <exon e_start="19247" e_stop="19395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCCTTTCCCTTTTTAGCTTTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGCGTATCCTTTTTTTGAATTTTGCTATTCGTTCTATTTATTTTACTTAAATGTGCGTTAAGTTTGAATTTTACTGTGTTGTTATGTTTTCTGTTTGATCTGGGAGTGTTCTATAGAATCTTATAGTTAGCTGCTGAAAATCGAAGTAGGATTTTAGTAACTTAGATAGAAAAAAAAATTGAATTTGATTAGGATTTAGAGAATTTTGTTGGAGTGAGCTGAATAGTTGGATTTTTCTGGTATGATTTACTTTTTGTGCTTTTTTTGGTTTTATTAGTTTTTAGATTTAGCTAAGAGTTGGTGTTGTAGGTGAGTTTTTTGAGGTTTAATGTGTGATGTTGTTTTTAAGTTAAAGTATGTGGAGAAGTGACGAGGGTTGCTCGGATGGTAAACACCTTCTACCTCCAATTATAAGGTTGTGGGTTCGAGTCGCGGGGGAGAAAAAAGGTGGGATTTTTCTGGGAGGGGTTAAAAAAAAGTTGTGTGGAGAAGTATTTAATTTCAGCAATAATTTCTTGTGATTCTTGACTAATGTGAAATATAGAGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACGGTGAGTTCAAATATCTATTCTTTCCAGTTCTCTTGCATGAGTAATGTTGTTATGCTTTATTGGGATAATTGATTTAGTTTCACAATGAGATCTTTCTTTTTCTGTTAACGTTTAATTCAAATGTAAATGCATTAAATGAGTGATCTATTATGATTATGCCTTCTATGCGGGAAGAGCTGCTGCTGCTGCTTTTGTTGTTGGAGCTTTCTCTAGATAATTAGAGTGGGTGAGGATTGAGGAATGAGGTTTGATGTGCATTTTGGATGTGGTAGAGAATTTGTAAAGTTGTTAATGCTGCCACTTAGATATAAGTGAGGTTATGTTATCATTGTTTCTTTATTGGTGCCTTATAAGAATCTTTACCACTTGAAATACCAGACTGCTGTGGTTCTTTTGGATGATCTGAAACAGGTAACACGTGGATCGTATATTTCAAAATATTATGGTTTATTAATCTAACTAATGTGTTTAGTTGCAACCTTTGGTATGATAAAGAATACAAATATGTGGAAACTGTAAACCTTACGAGTATCGAGTGATGGGTCATTCATCTCTATGAATGCATGAAATTATTTGTTGATTCCCTGTGTTGCAAAGAGCTGACTGCTACATGTTTTTATTTATCTTGAATCACTTTAGTCATATGGGACTGAATAGTCTGGTTTTGTGCTGTTCAGAGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAAGTAAGTCGATTTATCTTTTTAGCTCTATATATTCTATAAAATGAATACTAGCTTTACTCTTAAAGAATTGCAGCGAAAGTGCTCGCAATACATTCTAAGAATGTGCTCACAATTTTTATTTTATTACATTGCTGCTTTATCCTCTTAAGCATGTGTCCTATTTATTAAATGTTGGTCTTACCTGTGAACTTCTAGCTACGAGAAAGCATCGCCTGAAGTTTCCTCAGCCTGTTGGCTTGATTATTTTGGTGTAAATGAGCTAAGTGTAGTCTTAACTGTAGTATATGTCTTTTTACATAAAAACGGCTAGTTGATTTTATTCCTCGTGCAAAGAAAGTTAACTGCTTCACTATAGTATGATGTACAGTTAATTGCAATTAACACTTACTGCATGGTCATGCATTCATTAACCAACTCCGTATGTAACTGAAAGAGCATCTTTGGATCTTCAGTTACACAAGAAACTTGCTTTATGATTTCAAGATTGACTCCAAGGGCGGATCTGTGTGAAGGCGTACTCCCTCACCGGGAAAATGCACTGTATATCTAAGGTCAAATTTGAATTTTATGAGTATATGTGTTATAATGAACCCCCTTGATGAGTTAAGAAACTTAGCTTAGAAGTTAAGGGGGTTCAACCATTCCCTGGGTCTCTGGTTCTATTCTTGCCCACTGCATTTCTTTTTCCCCTTGTTTTTGCTTTGACTTTCCTCGCAGATTGGGCTCAGCTTGCAGCTGTTTGGGCCTTAAACTCCAACCCAATTGGAAAGCCTCATTATTTTTGGGCTCCATTGGAAACTTTATGCTTCCTACTTTTTTGTTATTTTTCTCTTTTATTATATTTCTCCTACTCAATCTTTGGTTCCAATCTGTTAGGCACACTATTTTTGCCTTTTATTCTTCTTGTCTCTATTGCTCATTTTGTTTCTACATAAAAAAAACCCTTTTATGAACTAATTCCAGGGAACTCTTCTAAAAAATGATGAGTTATTGTTGAACTTGCAATTGAGATAGAAAACTATTTTTTAAAGAAAGGTAAAATTAAGAAATTTAAAAGTTGTGGAGATTCTTTTAACAATATCTATTTAATTGAACTTACTTTTTTTGTTTTTTTGGTATTTCTTTCCTATTTTTTCAATTGTATTTTCGATAGAGGAAAACCGAATTACACTAATTTAAATGAACTAAAAATGACGTTTATTTGACTTCTGAATCTGTATTATAGTATTAGTAACTCATTCCTTACACCTTTTTAAAGAATCTTGACGATATTCAAAGTAATTTATGATTGAATGGACACTAATTTGGAATATTTAAAAAATAAAGTAGAATTCTAGGAGGTGCGACAGGCACTTTGCCATCAATATACTTGGGCATGCCCCTGGAAGTTAATCTAACTTTGATCAACTCAGCTTTAGATGCCCTCCCTACGTGTATGTTATCTCTCTTCCATATACCCCAGTCAAAGGTTGGATAAAATCAGAAGAAACTTCTTGTGGCAAGGCAATAACGAAAGGAAGGGTTTTCATTTGGTCAAATGGAAGAACATTATCAGAAGTAAAGAACAAGGTGGACTAGGTATCAAGAACCTTAAATACCAGAGCAAAGCACTCAAGGTCAAGTGGCTATGGAAGTACCATCAGGAGGACCAAGCCCTCTGGTACAGGGTAATCAGGAGCAAGTATGAGCTACTGAACACATGGGTAACTAAAGAGGTCAAAACCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTTCTCAATAATCAAGTAATCAATTAACTGTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATATATGGGTGGGTACTGTGAGCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTCCTCAGTAATCAATTAACTCTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATAAATGGGTGGGTACTGTGAGTCTTAAAGATCTCTTTCCTGACATCTTTGTTTTGGCTCAACAACAAAAGAAAACTGTTGCTGAAATGTGGTCACCACAAGGATGGAATATGATCTTTAGAAGAAACTTGAATGACTGGGAAATTCCCAGAATGATTGAACTTTTCAAACTACTGGAGAGTTTCCAAGGAATCCAACCAGGTGAAGGCTATTTATGGTGGCATGGGCGCAACAAAGGAAGATACAGGCTGAAGGAAGGATATAAACAAACTAGTCTTATGGAGAACCAAGACTTCAAATGGCCATGGGAGCAAATCTGGAGAGTCAAAGTGCCACAAAAAGTGGCATGCTTCACCTGGATGCTAGCCAATGAAGCAGTCCTGACATTGGACAATGTGGCCAAGAGGCATATCTCTATGCAACAGATGCTCCTTATGTGGTAAGGGTACAGAAACAGTAAAACACCTCTTCCTACACTGCAATTTCACTGACCAACTGTGGCAGATTTTCCTTGATCTCAGAGGCATTTCCTGGAGTATGCCTAGTAAGATTGATGAGACTCTTTTCAGTTGGGAGGAGGCTGAAGTTGGGGCTACAAACAGAGAAAGATGGAGGATGATCCCTGCTTGTATATGGTAGAGTATATGGAGAGAGAGAAATGATAGATGTTATGAAATAGGGACAACAACCTGCAGGAAGTCGAGCTTAAATGTATTTTGTTGTTCTGTTTTTGTTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAATCTTTTTCTTCTTTTTGTAAATATGGTTTTTCAGTACTAAAGTAGTACTGACTGATATACAAATAGTACTAGTGTCAAAAAATTAAAGTAGAACATTGTGAAGTAAAAGAAAAGAAGTATCAGAAATTTCAATAAGGCTTGATGGAGCAAGGAAAAAGTAGGACAAACACTAAATGGGGAATGAAAAGATAAGTTAATTTATTGGGTTAAGGTTAGTCTTTTCCTTTCCCACTTTGCTCCATTTTTCATTTTGTAATTCGTGCGTGTTTGCTTCTTCACACTTCGAACCTCCTTTAGTGAAAAATCCTGCCTTTGCCATTGATTGACACTAGTTATATTTAACTGAACATCCTTCAAGTGTTTGAATTATCTGCGTGTTAAACAAAATATGTAATCCTATTGTGCTTAAATGAGCAAGTCATATCCAGCTTGACTCCTAATCCGGTAATTGTTCTTGAAGTGTAGTGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCAT</genome_strand>
        <mrna_strand>CTCTTCCCCTTTCCCTTTTTAGCTTTTTCATTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738003" ref_strand="+" ref_description="SGN-E738003 [LC11DH11]">
      <seq>ctttttagctttttcacttttcttcacaaaatttgattcctaactttctctgtagattttgcactcactctcccttcctttcttcccctctctgtcatccacaatcggaagtttttcttctctctgttgacgacggacggtgacttttgtcggtgcttcttatcttatgctttgttgttttccggcgagttatccgatttgcggtgcagaatggctaatcgtggctacaaattgcaggaatttgtggcgcattcggggaatgtaaactgtttaaggtttgggaagaagacgcgtagacagtttctcactggtggagatgatcagaatgtgaatctttggtccattggtaaaccaacatccaccacgagcctaagtgggcatacgagtccaatagaatctgtagcttttgactcagcagaggttctagtgcttgctggagcttcatcaggtgtaataaagctatgggatctggaagaaacaaaaatggttcgcactcttacgggacacagatcatattgcactgcctgtgaattccatccttttggtgaattttttgcatctggatctatggatactaatcttaagatatgggatataagaaaaaaaggatgcatccacacatacaaaggtcatactcgaggaataagtaccatacgattctcccctgatggccgctgggtggtttctggcggatttgacaatgttgtgaaggtatgggacctaacagctggaaagctcttgcacgactttaagttccatgaagggcacattcgatccatagatttccatccacttgagtttcttttggcaacaggttcagctgaaccgcaccgtgaacttttgggatttggaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="13989" stop="21106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14289" g_stop="14524" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15066" g_stop="15196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="366" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15874" g_stop="15991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="484" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19247" g_stop="19473" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="711" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19474" i_stop="19552" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19553" g_stop="19655" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="814" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19656" i_stop="20765" i_length="1110">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20766" g_stop="20806" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="856" r_length="42" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E738003" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14289" e_stop="14524"/>
          <exon e_start="15066" e_stop="15196"/>
          <exon e_start="15874" e_stop="15991"/>
          <exon e_start="19247" e_stop="19473"/>
          <exon e_start="19553" e_stop="19655"/>
          <exon e_start="20766" e_stop="20806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTAGCTTTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGCGTATCCTTTTTTTGAATTTTGCTATTCGTTCTATTTATTTTACTTAAATGTGCGTTAAGTTTGAATTTTACTGTGTTGTTATGTTTTCTGTTTGATCTGGGAGTGTTCTATAGAATCTTATAGTTAGCTGCTGAAAATCGAAGTAGGATTTTAGTAACTTAGATAGAAAAAAAAATTGAATTTGATTAGGATTTAGAGAATTTTGTTGGAGTGAGCTGAATAGTTGGATTTTTCTGGTATGATTTACTTTTTGTGCTTTTTTTGGTTTTATTAGTTTTTAGATTTAGCTAAGAGTTGGTGTTGTAGGTGAGTTTTTTGAGGTTTAATGTGTGATGTTGTTTTTAAGTTAAAGTATGTGGAGAAGTGACGAGGGTTGCTCGGATGGTAAACACCTTCTACCTCCAATTATAAGGTTGTGGGTTCGAGTCGCGGGGGAGAAAAAAGGTGGGATTTTTCTGGGAGGGGTTAAAAAAAAGTTGTGTGGAGAAGTATTTAATTTCAGCAATAATTTCTTGTGATTCTTGACTAATGTGAAATATAGAGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACGGTGAGTTCAAATATCTATTCTTTCCAGTTCTCTTGCATGAGTAATGTTGTTATGCTTTATTGGGATAATTGATTTAGTTTCACAATGAGATCTTTCTTTTTCTGTTAACGTTTAATTCAAATGTAAATGCATTAAATGAGTGATCTATTATGATTATGCCTTCTATGCGGGAAGAGCTGCTGCTGCTGCTTTTGTTGTTGGAGCTTTCTCTAGATAATTAGAGTGGGTGAGGATTGAGGAATGAGGTTTGATGTGCATTTTGGATGTGGTAGAGAATTTGTAAAGTTGTTAATGCTGCCACTTAGATATAAGTGAGGTTATGTTATCATTGTTTCTTTATTGGTGCCTTATAAGAATCTTTACCACTTGAAATACCAGACTGCTGTGGTTCTTTTGGATGATCTGAAACAGGTAACACGTGGATCGTATATTTCAAAATATTATGGTTTATTAATCTAACTAATGTGTTTAGTTGCAACCTTTGGTATGATAAAGAATACAAATATGTGGAAACTGTAAACCTTACGAGTATCGAGTGATGGGTCATTCATCTCTATGAATGCATGAAATTATTTGTTGATTCCCTGTGTTGCAAAGAGCTGACTGCTACATGTTTTTATTTATCTTGAATCACTTTAGTCATATGGGACTGAATAGTCTGGTTTTGTGCTGTTCAGAGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAAGTAAGTCGATTTATCTTTTTAGCTCTATATATTCTATAAAATGAATACTAGCTTTACTCTTAAAGAATTGCAGCGAAAGTGCTCGCAATACATTCTAAGAATGTGCTCACAATTTTTATTTTATTACATTGCTGCTTTATCCTCTTAAGCATGTGTCCTATTTATTAAATGTTGGTCTTACCTGTGAACTTCTAGCTACGAGAAAGCATCGCCTGAAGTTTCCTCAGCCTGTTGGCTTGATTATTTTGGTGTAAATGAGCTAAGTGTAGTCTTAACTGTAGTATATGTCTTTTTACATAAAAACGGCTAGTTGATTTTATTCCTCGTGCAAAGAAAGTTAACTGCTTCACTATAGTATGATGTACAGTTAATTGCAATTAACACTTACTGCATGGTCATGCATTCATTAACCAACTCCGTATGTAACTGAAAGAGCATCTTTGGATCTTCAGTTACACAAGAAACTTGCTTTATGATTTCAAGATTGACTCCAAGGGCGGATCTGTGTGAAGGCGTACTCCCTCACCGGGAAAATGCACTGTATATCTAAGGTCAAATTTGAATTTTATGAGTATATGTGTTATAATGAACCCCCTTGATGAGTTAAGAAACTTAGCTTAGAAGTTAAGGGGGTTCAACCATTCCCTGGGTCTCTGGTTCTATTCTTGCCCACTGCATTTCTTTTTCCCCTTGTTTTTGCTTTGACTTTCCTCGCAGATTGGGCTCAGCTTGCAGCTGTTTGGGCCTTAAACTCCAACCCAATTGGAAAGCCTCATTATTTTTGGGCTCCATTGGAAACTTTATGCTTCCTACTTTTTTGTTATTTTTCTCTTTTATTATATTTCTCCTACTCAATCTTTGGTTCCAATCTGTTAGGCACACTATTTTTGCCTTTTATTCTTCTTGTCTCTATTGCTCATTTTGTTTCTACATAAAAAAAACCCTTTTATGAACTAATTCCAGGGAACTCTTCTAAAAAATGATGAGTTATTGTTGAACTTGCAATTGAGATAGAAAACTATTTTTTAAAGAAAGGTAAAATTAAGAAATTTAAAAGTTGTGGAGATTCTTTTAACAATATCTATTTAATTGAACTTACTTTTTTTGTTTTTTTGGTATTTCTTTCCTATTTTTTCAATTGTATTTTCGATAGAGGAAAACCGAATTACACTAATTTAAATGAACTAAAAATGACGTTTATTTGACTTCTGAATCTGTATTATAGTATTAGTAACTCATTCCTTACACCTTTTTAAAGAATCTTGACGATATTCAAAGTAATTTATGATTGAATGGACACTAATTTGGAATATTTAAAAAATAAAGTAGAATTCTAGGAGGTGCGACAGGCACTTTGCCATCAATATACTTGGGCATGCCCCTGGAAGTTAATCTAACTTTGATCAACTCAGCTTTAGATGCCCTCCCTACGTGTATGTTATCTCTCTTCCATATACCCCAGTCAAAGGTTGGATAAAATCAGAAGAAACTTCTTGTGGCAAGGCAATAACGAAAGGAAGGGTTTTCATTTGGTCAAATGGAAGAACATTATCAGAAGTAAAGAACAAGGTGGACTAGGTATCAAGAACCTTAAATACCAGAGCAAAGCACTCAAGGTCAAGTGGCTATGGAAGTACCATCAGGAGGACCAAGCCCTCTGGTACAGGGTAATCAGGAGCAAGTATGAGCTACTGAACACATGGGTAACTAAAGAGGTCAAAACCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTTCTCAATAATCAAGTAATCAATTAACTGTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATATATGGGTGGGTACTGTGAGCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTCCTCAGTAATCAATTAACTCTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATAAATGGGTGGGTACTGTGAGTCTTAAAGATCTCTTTCCTGACATCTTTGTTTTGGCTCAACAACAAAAGAAAACTGTTGCTGAAATGTGGTCACCACAAGGATGGAATATGATCTTTAGAAGAAACTTGAATGACTGGGAAATTCCCAGAATGATTGAACTTTTCAAACTACTGGAGAGTTTCCAAGGAATCCAACCAGGTGAAGGCTATTTATGGTGGCATGGGCGCAACAAAGGAAGATACAGGCTGAAGGAAGGATATAAACAAACTAGTCTTATGGAGAACCAAGACTTCAAATGGCCATGGGAGCAAATCTGGAGAGTCAAAGTGCCACAAAAAGTGGCATGCTTCACCTGGATGCTAGCCAATGAAGCAGTCCTGACATTGGACAATGTGGCCAAGAGGCATATCTCTATGCAACAGATGCTCCTTATGTGGTAAGGGTACAGAAACAGTAAAACACCTCTTCCTACACTGCAATTTCACTGACCAACTGTGGCAGATTTTCCTTGATCTCAGAGGCATTTCCTGGAGTATGCCTAGTAAGATTGATGAGACTCTTTTCAGTTGGGAGGAGGCTGAAGTTGGGGCTACAAACAGAGAAAGATGGAGGATGATCCCTGCTTGTATATGGTAGAGTATATGGAGAGAGAGAAATGATAGATGTTATGAAATAGGGACAACAACCTGCAGGAAGTCGAGCTTAAATGTATTTTGTTGTTCTGTTTTTGTTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAATCTTTTTCTTCTTTTTGTAAATATGGTTTTTCAGTACTAAAGTAGTACTGACTGATATACAAATAGTACTAGTGTCAAAAAATTAAAGTAGAACATTGTGAAGTAAAAGAAAAGAAGTATCAGAAATTTCAATAAGGCTTGATGGAGCAAGGAAAAAGTAGGACAAACACTAAATGGGGAATGAAAAGATAAGTTAATTTATTGGGTTAAGGTTAGTCTTTTCCTTTCCCACTTTGCTCCATTTTTCATTTTGTAATTCGTGCGTGTTTGCTTCTTCACACTTCGAACCTCCTTTAGTGAAAAATCCTGCCTTTGCCATTGATTGACACTAGTTATATTTAACTGAACATCCTTCAAGTGTTTGAATTATCTGCGTGTTAAACAAAATATGTAATCCTATTGTGCTTAAATGAGCAAGTCATATCCAGCTTGACTCCTAATCCGGTAATTGTTCTTGAAGTGTAGTGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTGAAGGTAATTCCTAAGTTGGCTAAAAAAATGTGGCATTATAGACTCTTTTTTTTCTTGAGTATTAACCTCTATTGGTAGTCAGGTATGGGACCTAACAGCTGGAAAGCTCTTGCACGACTTTAAGTTCCATGAAGGGCACATTCGATCCATAGATTTCCATCCACTTGAGTTTCTTTTGGCAACAGGTACTCCTTTTATTCTGTACCCAATCATAGAAATGGTGCTCTGAACAAATTTATGTCTGGTTTTCTTCCTTCCCTTATCTTTTCTTTTGATGTGAATGATTCTCCTTATCTCTGTCCTTAATCTTTCTTTTGTTTTATTTCATATTTCAGTCACGACTCTACATCTTCTAACACAAGGATCAAATTAACTTAGTGGTTAACATACCACTATAGCTTGTTTGGCCAAGCTACTGAAGGCCAAATATGTCTTCTTCTTTTTCCTTTTTTTTCTTTTTTAAAGAAACTCTTATTTAGAGATTGAAGGTATTTGGCAAAGCTTTTGGTGAAAGAAATAAGTGTTTTTGAGTAGTACTGGAAATTGCTTTTCAGCTTTCAAGCAGAAAGTGGAAAAAATAGCTTCTTCCAATAGTAATTGCTTTTTTTTCTTTTCAGACAAGATTACCCATCTAAACAATATTTACCGAATTGATTAGTTGTGGCTTCCTTTTTTCATAATTTACCACTCAAAAATACTTTTGCAAATTTTCCAAACTTATAACAAAAGAACTTCTCAAATAATTTAGTGAAACACAAACTGCGATTCTTCCTAAGTACTTTCTCGAAAAGGACTTTTGATAAGAAGTACTTCTCAAAAGAAGCTGATTTCGGAAGCTTGGCCAAACATGCTACATGCTTTTTTTACAGACTTGCCAAAAGGTTGTGTTTTTGCCTTCCCTTGTCATAAATAGTGGTACTTGCTTAACTTTTCAATTAGAAAAGAGAATGTGGTCAGTTAAAATGGAGAAATCACGGGAAAAGGTGCATGTTTTAAGCAAAAGGATTTATCTCACTGATTCATTGGGCAGATTATGAGAAGTTCAAACATTTCAAGAGGTGGTAGTGTAGTTGAGAGTGTGAAATGTTTTGAAGAATTATCTTGCTCTCCATTTATTATGGTCCATCTGTGATGGAATTTTAAAGCCAGATCCATCTTAAGATGGCATATTATAGCAGGATCAAATAATGGATTCTTCTAAACACAATAGAGTTTTGTACCTTGCCTCTATCCAAATAATGCTATTTTTTTCTGCTGTCCATGTGATCTTGTTTCAACACTTGAGTTGTTCTCAGGTTCAGCTG-ACCGCACCGTGAACTTTTGGGATTTGGAAACA</genome_strand>
        <mrna_strand>CTTTTTAGCTTTTTCACTTTTCTTC-ACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTGAAG...............................................................................GTATGGGACCTAACAGCTGGAAAGCTCTTGCACGACTTTAAGTTCCATGAAGGGCACATTCGATCCATAGATTTCCATCCACTTGAGTTTCTTTTGGCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGCTGAACCGCACCGTGAACTTTTGGGATTTGGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737750" ref_strand="+" ref_description="SGN-E737750 [LC11AD09]">
      <seq>ttttcacttttcttcaacaaaatttgattcctaactttctctgtagattttgcactcactctcccttcctttcttcccctctctgtcatccacaatcggaagtttttcttctctctgttgacgacggacggtgacttttgtcggtgcttcttatcttatgctttgttgttttccggcgagttatccgatttgcggtgcagaatggctaatcgtggctacaaattgcaggaatttgtggcgcattcggggaatgtaaactgtttaaggtttgggaagaagacgcgtagacagtttctcactggtggagatgatcagaatgtgaatctttggtccattggtaaaccaacatccaccacgagcctaagtgggcatacgagtccaatagaatctgtagcttttgactcagcagaggttctagtgcttgctggagcttcatcaggtgtaataaagctatgggatctggaagaaacaaaaatggttcgcactcttacgggacacagatcatattgcactgcctgtgaattccatccttttggtgaattttttgcatctggatctatggatactaatcttaagatatgggatataagaaaaaaaaggatgcatccacacatacaaaggtcatactcgaggaataagtaccatacgattctcccctgatggccgctgggtggtttctggcggatttgacaatgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="13999" stop="19770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14299" g_stop="14524" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15066" g_stop="15196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="357" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15874" g_stop="15991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="475" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19247" g_stop="19470" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="700" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E737750" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14299" e_stop="14524"/>
          <exon e_start="15066" e_stop="15196"/>
          <exon e_start="15874" e_stop="15991"/>
          <exon e_start="19247" e_stop="19470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGCGTATCCTTTTTTTGAATTTTGCTATTCGTTCTATTTATTTTACTTAAATGTGCGTTAAGTTTGAATTTTACTGTGTTGTTATGTTTTCTGTTTGATCTGGGAGTGTTCTATAGAATCTTATAGTTAGCTGCTGAAAATCGAAGTAGGATTTTAGTAACTTAGATAGAAAAAAAAATTGAATTTGATTAGGATTTAGAGAATTTTGTTGGAGTGAGCTGAATAGTTGGATTTTTCTGGTATGATTTACTTTTTGTGCTTTTTTTGGTTTTATTAGTTTTTAGATTTAGCTAAGAGTTGGTGTTGTAGGTGAGTTTTTTGAGGTTTAATGTGTGATGTTGTTTTTAAGTTAAAGTATGTGGAGAAGTGACGAGGGTTGCTCGGATGGTAAACACCTTCTACCTCCAATTATAAGGTTGTGGGTTCGAGTCGCGGGGGAGAAAAAAGGTGGGATTTTTCTGGGAGGGGTTAAAAAAAAGTTGTGTGGAGAAGTATTTAATTTCAGCAATAATTTCTTGTGATTCTTGACTAATGTGAAATATAGAGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACGGTGAGTTCAAATATCTATTCTTTCCAGTTCTCTTGCATGAGTAATGTTGTTATGCTTTATTGGGATAATTGATTTAGTTTCACAATGAGATCTTTCTTTTTCTGTTAACGTTTAATTCAAATGTAAATGCATTAAATGAGTGATCTATTATGATTATGCCTTCTATGCGGGAAGAGCTGCTGCTGCTGCTTTTGTTGTTGGAGCTTTCTCTAGATAATTAGAGTGGGTGAGGATTGAGGAATGAGGTTTGATGTGCATTTTGGATGTGGTAGAGAATTTGTAAAGTTGTTAATGCTGCCACTTAGATATAAGTGAGGTTATGTTATCATTGTTTCTTTATTGGTGCCTTATAAGAATCTTTACCACTTGAAATACCAGACTGCTGTGGTTCTTTTGGATGATCTGAAACAGGTAACACGTGGATCGTATATTTCAAAATATTATGGTTTATTAATCTAACTAATGTGTTTAGTTGCAACCTTTGGTATGATAAAGAATACAAATATGTGGAAACTGTAAACCTTACGAGTATCGAGTGATGGGTCATTCATCTCTATGAATGCATGAAATTATTTGTTGATTCCCTGTGTTGCAAAGAGCTGACTGCTACATGTTTTTATTTATCTTGAATCACTTTAGTCATATGGGACTGAATAGTCTGGTTTTGTGCTGTTCAGAGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAAGTAAGTCGATTTATCTTTTTAGCTCTATATATTCTATAAAATGAATACTAGCTTTACTCTTAAAGAATTGCAGCGAAAGTGCTCGCAATACATTCTAAGAATGTGCTCACAATTTTTATTTTATTACATTGCTGCTTTATCCTCTTAAGCATGTGTCCTATTTATTAAATGTTGGTCTTACCTGTGAACTTCTAGCTACGAGAAAGCATCGCCTGAAGTTTCCTCAGCCTGTTGGCTTGATTATTTTGGTGTAAATGAGCTAAGTGTAGTCTTAACTGTAGTATATGTCTTTTTACATAAAAACGGCTAGTTGATTTTATTCCTCGTGCAAAGAAAGTTAACTGCTTCACTATAGTATGATGTACAGTTAATTGCAATTAACACTTACTGCATGGTCATGCATTCATTAACCAACTCCGTATGTAACTGAAAGAGCATCTTTGGATCTTCAGTTACACAAGAAACTTGCTTTATGATTTCAAGATTGACTCCAAGGGCGGATCTGTGTGAAGGCGTACTCCCTCACCGGGAAAATGCACTGTATATCTAAGGTCAAATTTGAATTTTATGAGTATATGTGTTATAATGAACCCCCTTGATGAGTTAAGAAACTTAGCTTAGAAGTTAAGGGGGTTCAACCATTCCCTGGGTCTCTGGTTCTATTCTTGCCCACTGCATTTCTTTTTCCCCTTGTTTTTGCTTTGACTTTCCTCGCAGATTGGGCTCAGCTTGCAGCTGTTTGGGCCTTAAACTCCAACCCAATTGGAAAGCCTCATTATTTTTGGGCTCCATTGGAAACTTTATGCTTCCTACTTTTTTGTTATTTTTCTCTTTTATTATATTTCTCCTACTCAATCTTTGGTTCCAATCTGTTAGGCACACTATTTTTGCCTTTTATTCTTCTTGTCTCTATTGCTCATTTTGTTTCTACATAAAAAAAACCCTTTTATGAACTAATTCCAGGGAACTCTTCTAAAAAATGATGAGTTATTGTTGAACTTGCAATTGAGATAGAAAACTATTTTTTAAAGAAAGGTAAAATTAAGAAATTTAAAAGTTGTGGAGATTCTTTTAACAATATCTATTTAATTGAACTTACTTTTTTTGTTTTTTTGGTATTTCTTTCCTATTTTTTCAATTGTATTTTCGATAGAGGAAAACCGAATTACACTAATTTAAATGAACTAAAAATGACGTTTATTTGACTTCTGAATCTGTATTATAGTATTAGTAACTCATTCCTTACACCTTTTTAAAGAATCTTGACGATATTCAAAGTAATTTATGATTGAATGGACACTAATTTGGAATATTTAAAAAATAAAGTAGAATTCTAGGAGGTGCGACAGGCACTTTGCCATCAATATACTTGGGCATGCCCCTGGAAGTTAATCTAACTTTGATCAACTCAGCTTTAGATGCCCTCCCTACGTGTATGTTATCTCTCTTCCATATACCCCAGTCAAAGGTTGGATAAAATCAGAAGAAACTTCTTGTGGCAAGGCAATAACGAAAGGAAGGGTTTTCATTTGGTCAAATGGAAGAACATTATCAGAAGTAAAGAACAAGGTGGACTAGGTATCAAGAACCTTAAATACCAGAGCAAAGCACTCAAGGTCAAGTGGCTATGGAAGTACCATCAGGAGGACCAAGCCCTCTGGTACAGGGTAATCAGGAGCAAGTATGAGCTACTGAACACATGGGTAACTAAAGAGGTCAAAACCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTTCTCAATAATCAAGTAATCAATTAACTGTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATATATGGGTGGGTACTGTGAGCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTCCTCAGTAATCAATTAACTCTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATAAATGGGTGGGTACTGTGAGTCTTAAAGATCTCTTTCCTGACATCTTTGTTTTGGCTCAACAACAAAAGAAAACTGTTGCTGAAATGTGGTCACCACAAGGATGGAATATGATCTTTAGAAGAAACTTGAATGACTGGGAAATTCCCAGAATGATTGAACTTTTCAAACTACTGGAGAGTTTCCAAGGAATCCAACCAGGTGAAGGCTATTTATGGTGGCATGGGCGCAACAAAGGAAGATACAGGCTGAAGGAAGGATATAAACAAACTAGTCTTATGGAGAACCAAGACTTCAAATGGCCATGGGAGCAAATCTGGAGAGTCAAAGTGCCACAAAAAGTGGCATGCTTCACCTGGATGCTAGCCAATGAAGCAGTCCTGACATTGGACAATGTGGCCAAGAGGCATATCTCTATGCAACAGATGCTCCTTATGTGGTAAGGGTACAGAAACAGTAAAACACCTCTTCCTACACTGCAATTTCACTGACCAACTGTGGCAGATTTTCCTTGATCTCAGAGGCATTTCCTGGAGTATGCCTAGTAAGATTGATGAGACTCTTTTCAGTTGGGAGGAGGCTGAAGTTGGGGCTACAAACAGAGAAAGATGGAGGATGATCCCTGCTTGTATATGGTAGAGTATATGGAGAGAGAGAAATGATAGATGTTATGAAATAGGGACAACAACCTGCAGGAAGTCGAGCTTAAATGTATTTTGTTGTTCTGTTTTTGTTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAATCTTTTTCTTCTTTTTGTAAATATGGTTTTTCAGTACTAAAGTAGTACTGACTGATATACAAATAGTACTAGTGTCAAAAAATTAAAGTAGAACATTGTGAAGTAAAAGAAAAGAAGTATCAGAAATTTCAATAAGGCTTGATGGAGCAAGGAAAAAGTAGGACAAACACTAAATGGGGAATGAAAAGATAAGTTAATTTATTGGGTTAAGGTTAGTCTTTTCCTTTCCCACTTTGCTCCATTTTTCATTTTGTAATTCGTGCGTGTTTGCTTCTTCACACTTCGAACCTCCTTTAGTGAAAAATCCTGCCTTTGCCATTGATTGACACTAGTTATATTTAACTGAACATCCTTCAAGTGTTTGAATTATCTGCGTGTTAAACAAAATATGTAATCCTATTGTGCTTAAATGAGCAAGTCATATCCAGCTTGACTCCTAATCCGGTAATTGTTCTTGAAGTGTAGTGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAG-AAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTG</genome_strand>
        <mrna_strand>TTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737890" ref_strand="+" ref_description="SGN-E737890 [LC11CD09]">
      <seq>tcctaactttctctgtagattttgcactcactctcccttcctttcttcccctctctgtcatccacaatcggaagtttttcttctctctgttgacgacggacggtgacttttgtcggtgcttcttatcttatgctttgttgttttccggcgagttatccgatttgcggtgcagaatggctaatcgtggctacaaattgcaggaatttgtggcgcattcggggaatgtaaactgtttaaggtttgggaagaagacgcgtagacagtttctcactggtggagatgatcagaatgtgaatctttggtccattggtaaaccaacatccaccacgagcctaagtgggcatacgagtccaatagaatctgtagcttttgactcagcagaggttctagtgcttgctggagcttcatcaggtgtaataaagctatgggatctggaagaaacaaaaatggttcgcactcttacgggacacagatcatattgcactgcctgtgaattccatccttttggtgaattttttgcatctggatctatggatactaatcttaagatatgggatataagaaaaaaaggatgcatccacacatacaaaggtcatactcgaggaataagtaccatacgattctcccctgatggccgctgggtggtttctggcggatttgacaatgttgtgaaggtatgggacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="14027" stop="19776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14327" g_stop="14524" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15066" g_stop="15196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="329" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15874" g_stop="15991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="447" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.426" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19247" g_stop="19473" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="674" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19474" i_stop="19552" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19553" g_stop="19565" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="687" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E737890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14327" e_stop="14524"/>
          <exon e_start="15066" e_stop="15196"/>
          <exon e_start="15874" e_stop="15991"/>
          <exon e_start="19247" e_stop="19473"/>
          <exon e_start="19553" e_stop="19565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGCGTATCCTTTTTTTGAATTTTGCTATTCGTTCTATTTATTTTACTTAAATGTGCGTTAAGTTTGAATTTTACTGTGTTGTTATGTTTTCTGTTTGATCTGGGAGTGTTCTATAGAATCTTATAGTTAGCTGCTGAAAATCGAAGTAGGATTTTAGTAACTTAGATAGAAAAAAAAATTGAATTTGATTAGGATTTAGAGAATTTTGTTGGAGTGAGCTGAATAGTTGGATTTTTCTGGTATGATTTACTTTTTGTGCTTTTTTTGGTTTTATTAGTTTTTAGATTTAGCTAAGAGTTGGTGTTGTAGGTGAGTTTTTTGAGGTTTAATGTGTGATGTTGTTTTTAAGTTAAAGTATGTGGAGAAGTGACGAGGGTTGCTCGGATGGTAAACACCTTCTACCTCCAATTATAAGGTTGTGGGTTCGAGTCGCGGGGGAGAAAAAAGGTGGGATTTTTCTGGGAGGGGTTAAAAAAAAGTTGTGTGGAGAAGTATTTAATTTCAGCAATAATTTCTTGTGATTCTTGACTAATGTGAAATATAGAGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACGGTGAGTTCAAATATCTATTCTTTCCAGTTCTCTTGCATGAGTAATGTTGTTATGCTTTATTGGGATAATTGATTTAGTTTCACAATGAGATCTTTCTTTTTCTGTTAACGTTTAATTCAAATGTAAATGCATTAAATGAGTGATCTATTATGATTATGCCTTCTATGCGGGAAGAGCTGCTGCTGCTGCTTTTGTTGTTGGAGCTTTCTCTAGATAATTAGAGTGGGTGAGGATTGAGGAATGAGGTTTGATGTGCATTTTGGATGTGGTAGAGAATTTGTAAAGTTGTTAATGCTGCCACTTAGATATAAGTGAGGTTATGTTATCATTGTTTCTTTATTGGTGCCTTATAAGAATCTTTACCACTTGAAATACCAGACTGCTGTGGTTCTTTTGGATGATCTGAAACAGGTAACACGTGGATCGTATATTTCAAAATATTATGGTTTATTAATCTAACTAATGTGTTTAGTTGCAACCTTTGGTATGATAAAGAATACAAATATGTGGAAACTGTAAACCTTACGAGTATCGAGTGATGGGTCATTCATCTCTATGAATGCATGAAATTATTTGTTGATTCCCTGTGTTGCAAAGAGCTGACTGCTACATGTTTTTATTTATCTTGAATCACTTTAGTCATATGGGACTGAATAGTCTGGTTTTGTGCTGTTCAGAGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAAGTAAGTCGATTTATCTTTTTAGCTCTATATATTCTATAAAATGAATACTAGCTTTACTCTTAAAGAATTGCAGCGAAAGTGCTCGCAATACATTCTAAGAATGTGCTCACAATTTTTATTTTATTACATTGCTGCTTTATCCTCTTAAGCATGTGTCCTATTTATTAAATGTTGGTCTTACCTGTGAACTTCTAGCTACGAGAAAGCATCGCCTGAAGTTTCCTCAGCCTGTTGGCTTGATTATTTTGGTGTAAATGAGCTAAGTGTAGTCTTAACTGTAGTATATGTCTTTTTACATAAAAACGGCTAGTTGATTTTATTCCTCGTGCAAAGAAAGTTAACTGCTTCACTATAGTATGATGTACAGTTAATTGCAATTAACACTTACTGCATGGTCATGCATTCATTAACCAACTCCGTATGTAACTGAAAGAGCATCTTTGGATCTTCAGTTACACAAGAAACTTGCTTTATGATTTCAAGATTGACTCCAAGGGCGGATCTGTGTGAAGGCGTACTCCCTCACCGGGAAAATGCACTGTATATCTAAGGTCAAATTTGAATTTTATGAGTATATGTGTTATAATGAACCCCCTTGATGAGTTAAGAAACTTAGCTTAGAAGTTAAGGGGGTTCAACCATTCCCTGGGTCTCTGGTTCTATTCTTGCCCACTGCATTTCTTTTTCCCCTTGTTTTTGCTTTGACTTTCCTCGCAGATTGGGCTCAGCTTGCAGCTGTTTGGGCCTTAAACTCCAACCCAATTGGAAAGCCTCATTATTTTTGGGCTCCATTGGAAACTTTATGCTTCCTACTTTTTTGTTATTTTTCTCTTTTATTATATTTCTCCTACTCAATCTTTGGTTCCAATCTGTTAGGCACACTATTTTTGCCTTTTATTCTTCTTGTCTCTATTGCTCATTTTGTTTCTACATAAAAAAAACCCTTTTATGAACTAATTCCAGGGAACTCTTCTAAAAAATGATGAGTTATTGTTGAACTTGCAATTGAGATAGAAAACTATTTTTTAAAGAAAGGTAAAATTAAGAAATTTAAAAGTTGTGGAGATTCTTTTAACAATATCTATTTAATTGAACTTACTTTTTTTGTTTTTTTGGTATTTCTTTCCTATTTTTTCAATTGTATTTTCGATAGAGGAAAACCGAATTACACTAATTTAAATGAACTAAAAATGACGTTTATTTGACTTCTGAATCTGTATTATAGTATTAGTAACTCATTCCTTACACCTTTTTAAAGAATCTTGACGATATTCAAAGTAATTTATGATTGAATGGACACTAATTTGGAATATTTAAAAAATAAAGTAGAATTCTAGGAGGTGCGACAGGCACTTTGCCATCAATATACTTGGGCATGCCCCTGGAAGTTAATCTAACTTTGATCAACTCAGCTTTAGATGCCCTCCCTACGTGTATGTTATCTCTCTTCCATATACCCCAGTCAAAGGTTGGATAAAATCAGAAGAAACTTCTTGTGGCAAGGCAATAACGAAAGGAAGGGTTTTCATTTGGTCAAATGGAAGAACATTATCAGAAGTAAAGAACAAGGTGGACTAGGTATCAAGAACCTTAAATACCAGAGCAAAGCACTCAAGGTCAAGTGGCTATGGAAGTACCATCAGGAGGACCAAGCCCTCTGGTACAGGGTAATCAGGAGCAAGTATGAGCTACTGAACACATGGGTAACTAAAGAGGTCAAAACCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTTCTCAATAATCAAGTAATCAATTAACTGTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATATATGGGTGGGTACTGTGAGCCCCTATGGTATTAGCCTCTGGAAATCCATTAGAATATTCTGGCAGTTCCTCAGTAATCAATTAACTCTCAAAGTTCGAAATGGTAGAAAAACAAGTTTTTGGATTGATAAATGGGTGGGTACTGTGAGTCTTAAAGATCTCTTTCCTGACATCTTTGTTTTGGCTCAACAACAAAAGAAAACTGTTGCTGAAATGTGGTCACCACAAGGATGGAATATGATCTTTAGAAGAAACTTGAATGACTGGGAAATTCCCAGAATGATTGAACTTTTCAAACTACTGGAGAGTTTCCAAGGAATCCAACCAGGTGAAGGCTATTTATGGTGGCATGGGCGCAACAAAGGAAGATACAGGCTGAAGGAAGGATATAAACAAACTAGTCTTATGGAGAACCAAGACTTCAAATGGCCATGGGAGCAAATCTGGAGAGTCAAAGTGCCACAAAAAGTGGCATGCTTCACCTGGATGCTAGCCAATGAAGCAGTCCTGACATTGGACAATGTGGCCAAGAGGCATATCTCTATGCAACAGATGCTCCTTATGTGGTAAGGGTACAGAAACAGTAAAACACCTCTTCCTACACTGCAATTTCACTGACCAACTGTGGCAGATTTTCCTTGATCTCAGAGGCATTTCCTGGAGTATGCCTAGTAAGATTGATGAGACTCTTTTCAGTTGGGAGGAGGCTGAAGTTGGGGCTACAAACAGAGAAAGATGGAGGATGATCCCTGCTTGTATATGGTAGAGTATATGGAGAGAGAGAAATGATAGATGTTATGAAATAGGGACAACAACCTGCAGGAAGTCGAGCTTAAATGTATTTTGTTGTTCTGTTTTTGTTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAATCTTTTTCTTCTTTTTGTAAATATGGTTTTTCAGTACTAAAGTAGTACTGACTGATATACAAATAGTACTAGTGTCAAAAAATTAAAGTAGAACATTGTGAAGTAAAAGAAAAGAAGTATCAGAAATTTCAATAAGGCTTGATGGAGCAAGGAAAAAGTAGGACAAACACTAAATGGGGAATGAAAAGATAAGTTAATTTATTGGGTTAAGGTTAGTCTTTTCCTTTCCCACTTTGCTCCATTTTTCATTTTGTAATTCGTGCGTGTTTGCTTCTTCACACTTCGAACCTCCTTTAGTGAAAAATCCTGCCTTTGCCATTGATTGACACTAGTTATATTTAACTGAACATCCTTCAAGTGTTTGAATTATCTGCGTGTTAAACAAAATATGTAATCCTATTGTGCTTAAATGAGCAAGTCATATCCAGCTTGACTCCTAATCCGGTAATTGTTCTTGAAGTGTAGTGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTGAAGGTAATTCCTAAGTTGGCTAAAAAAATGTGGCATTATAGACTCTTTTTTTTCTTGAGTATTAACCTCTATTGGTAGTCAGGTATGGGACCTAA</genome_strand>
        <mrna_strand>TCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTGAAG...............................................................................GTATGGGACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453981" ref_strand="+" ref_description="SGN-E453981 [cSTS-21-D10]">
      <seq>gaaggtttattcatgggagcctgtaaagtgtcatgactctgttgaaatgggatggtcgactttaagcgatctctgcatacatgatgggaaacttgtaggtggtgcttattaccaaaactatgttggagtatgggttgcagatgtttcgcttattgatccccatggagctggtttaactccagatagacaaagtaacttggagcagaaacaggaccacgtggagagtcgtttagaaagaataggaagcaacagaagttctaattcaaatcttcgctgctcatcacctgatattgattccaaggaaataaagaatatatatgtggacagtgaaaatcctgttaccattaagaaagttacttctccttctccaaaagtggttcctcctttagattctaaggaaaacaagaaacagttgagtcagaagcttaattctgtcgttggtttacctgcaaaaactaatggattgccagtaggtaaatcatttgttgtccccagtgtggtacctcgtgatattccagaggagaagaacttggatacttgtagaagggaatctgtttctgcaaccagagtaagtagtggtatatcacaaaagccatctcacataaagtgcccatccagcaacaactatgatatggagaagatttctgtggctcttcagtcagaatttgcagacaacttgctgcgtacagtagattgtaagaaggaatcagatattgatagcaggcttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="21603" stop="23514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21903" g_stop="22050" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22051" i_stop="22172" i_length="122">
            <donor d_prob="0.117" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22173" g_stop="22350" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="326" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22351" i_stop="22808" i_length="458">
            <donor d_prob="0.775" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22809" g_stop="23214" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="732" r_length="406" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E453981" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21903" e_stop="22050"/>
          <exon e_start="22173" e_stop="22350"/>
          <exon e_start="22809" e_stop="23214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTTATTCATGGGAGCCTGTAAATTGTCATGACTCTGTTGAAATGGGATGGTCGACTTTAAGCGATCTCTGCATACATGATGGGAAGCTTGTAGGTGGTGCTTATTACCAAAACTATGTTGGAGTTTGGGTTGCAGATATTTCGGTAATTAGCTTGATCACTGAAGCTTAAGTCAAACTAGTCCATGGCTTTAGTTTTCTTTACATTTGACCCATTGTTTCAAGATCAGTTTTTCGATTTGTCTTATTTGTTGTCTTTTCTGCCAGCTTATTGATCCCCATGGAGCTGGTTCAACTCCAGATAGACAAAGTAACTTGGAGCAGAAACAGGACCATGTGGAGAGTCGTTTAGAAAGAATAGGAAGCAACAGAAGTTCTAATTCAAATCTTCGCTGCACATCACCTGATATTGATTCCAAGGAAATAAAGAATATATATGTGGACTGTAAGTTGTTTTAACATCCTACTCTAAAAATCAGACCATGGAAACCAAAATATTTTTTAGCAACTTGCGATTAAGAAACTCTAATATTGACATCTTGTTCAATTATAGCCATACACTTGGGGTGGAATATAATGGCCTGGTGTAAGTGGTTACCTGATATGGTGATAACTGGTCTTCTGGGTAAACCAACCTGTTCCGTACTTTTAGGCCAATGTTGGGTACTTAGAAGATTTCACCTTGCCACCGACATATCCTTCCATGAAAGGGTTTAATGAATTTCATCATAGTTATTCAATACTAGGTCATCAAAAAAATAAATAATAGTTATTCATTACTAGTTGAAATGCAACTTTTTATTGAATACTCTTTCTACTTCATTTAGTATCACAAATTTCAGTTTACATATCCACATCTAATTGCAGTTCTATTTCCATGCACTTAATAGTTTCTTTTTGCAGGTGAAAATCCTGTAACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAAATTCTAAGGAAAACAAGAATCAGTTGAGTCAGAAGCTTAATTCTGTTGTAGGTTTACCTGCAAAAATTAATGGATTGCCAGTAGGTAAATCATTTGTCGTCCCCAGTGTGGTACCTCGTGATATTCCAGAGGAGAAGAAATTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGTGCAAGTAGTGGTATACCACAAAAGCCGTCTCACATAAAGTGCCCATCCAGCAACAACTTTGATATGGAGAAGATCTCTGTGGCTCTTCAGTCTGAAATTGCAGACAACTTGCTGCATACAGTAGATAGTAAGAAGGAATCAGATATTAATAGCAGGCTTATGGC</genome_strand>
        <mrna_strand>GAAGGTTTATTCATGGGAGCCTGTAAAGTGTCATGACTCTGTTGAAATGGGATGGTCGACTTTAAGCGATCTCTGCATACATGATGGGAAACTTGTAGGTGGTGCTTATTACCAAAACTATGTTGGAGTATGGGTTGCAGATGTTTCG..........................................................................................................................CTTATTGATCCCCATGGAGCTGGTTTAACTCCAGATAGACAAAGTAACTTGGAGCAGAAACAGGACCACGTGGAGAGTCGTTTAGAAAGAATAGGAAGCAACAGAAGTTCTAATTCAAATCTTCGCTGCTCATCACCTGATATTGATTCCAAGGAAATAAAGAATATATATGTGGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCTGTTACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAGATTCTAAGGAAAACAAGAAACAGTTGAGTCAGAAGCTTAATTCTGTCGTTGGTTTACCTGCAAAAACTAATGGATTGCCAGTAGGTAAATCATTTGTTGTCCCCAGTGTGGTACCTCGTGATATTCCAGAGGAGAAGAACTTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGAGTAAGTAGTGGTATATCACAAAAGCCATCTCACATAAAGTGCCCATCCAGCAACAACTATGATATGGAGAAGATTTCTGTGGCTCTTCAGTCAGAATTTGCAGACAACTTGCTGCGTACAGTAGATTGTAAGAAGGAATCAGATATTGATAGCAGGCTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425155" ref_strand="+" ref_description="SGN-E425155 [STM-44-L11]">
      <seq>gaaggtttattcatgggagcctgtaaagtgtcatgactctgttgaaatgggatggtcgactttaagcgatctctgcatacatgatgggaaacttgtaggtggtgcttattaccaaaactatgttggagtatgggttgcagatgtttcgcttattgatccccatggagctggtttaactccagatagacaaagtaacttggagcagaaacaggaccacgtggagagtcgtttagaaagaataggaagcaacagaagttctaattcaaatcttcgctgctcatcacctgatattgattccaaggaaataaagaatatatatgtggacagtgaaaatcctgttaccattaagaaagttacttctccttctccaaaagtggttcctcctttagattctaaggaaaacaagaaacagttgagtcagaagcttaattctgtcgttggtttacctgcaaaaactaatggattgccagtaggtaaatcatttgttgtccccagtgtggtacctcgtgatattccagaggagaagaacttggatacttgtagaagggaatctgtttctgcaaccagagtaagtagtggtatatcacaaaagccatctcacataaagtgcccatccagcaacaactatgatatggagaagatttctgtggctcttcagtcagaatttgcagacaacttgctgcgtacagtagattgtaagaaggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="21603" stop="23490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21903" g_stop="22050" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22051" i_stop="22172" i_length="122">
            <donor d_prob="0.117" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22173" g_stop="22350" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="326" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22351" i_stop="22808" i_length="458">
            <donor d_prob="0.775" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22809" g_stop="23190" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="708" r_length="382" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E425155" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21903" e_stop="22050"/>
          <exon e_start="22173" e_stop="22350"/>
          <exon e_start="22809" e_stop="23190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTTATTCATGGGAGCCTGTAAATTGTCATGACTCTGTTGAAATGGGATGGTCGACTTTAAGCGATCTCTGCATACATGATGGGAAGCTTGTAGGTGGTGCTTATTACCAAAACTATGTTGGAGTTTGGGTTGCAGATATTTCGGTAATTAGCTTGATCACTGAAGCTTAAGTCAAACTAGTCCATGGCTTTAGTTTTCTTTACATTTGACCCATTGTTTCAAGATCAGTTTTTCGATTTGTCTTATTTGTTGTCTTTTCTGCCAGCTTATTGATCCCCATGGAGCTGGTTCAACTCCAGATAGACAAAGTAACTTGGAGCAGAAACAGGACCATGTGGAGAGTCGTTTAGAAAGAATAGGAAGCAACAGAAGTTCTAATTCAAATCTTCGCTGCACATCACCTGATATTGATTCCAAGGAAATAAAGAATATATATGTGGACTGTAAGTTGTTTTAACATCCTACTCTAAAAATCAGACCATGGAAACCAAAATATTTTTTAGCAACTTGCGATTAAGAAACTCTAATATTGACATCTTGTTCAATTATAGCCATACACTTGGGGTGGAATATAATGGCCTGGTGTAAGTGGTTACCTGATATGGTGATAACTGGTCTTCTGGGTAAACCAACCTGTTCCGTACTTTTAGGCCAATGTTGGGTACTTAGAAGATTTCACCTTGCCACCGACATATCCTTCCATGAAAGGGTTTAATGAATTTCATCATAGTTATTCAATACTAGGTCATCAAAAAAATAAATAATAGTTATTCATTACTAGTTGAAATGCAACTTTTTATTGAATACTCTTTCTACTTCATTTAGTATCACAAATTTCAGTTTACATATCCACATCTAATTGCAGTTCTATTTCCATGCACTTAATAGTTTCTTTTTGCAGGTGAAAATCCTGTAACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAAATTCTAAGGAAAACAAGAATCAGTTGAGTCAGAAGCTTAATTCTGTTGTAGGTTTACCTGCAAAAATTAATGGATTGCCAGTAGGTAAATCATTTGTCGTCCCCAGTGTGGTACCTCGTGATATTCCAGAGGAGAAGAAATTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGTGCAAGTAGTGGTATACCACAAAAGCCGTCTCACATAAAGTGCCCATCCAGCAACAACTTTGATATGGAGAAGATCTCTGTGGCTCTTCAGTCTGAAATTGCAGACAACTTGCTGCATACAGTAGATAGTAAGAAGGAATC</genome_strand>
        <mrna_strand>GAAGGTTTATTCATGGGAGCCTGTAAAGTGTCATGACTCTGTTGAAATGGGATGGTCGACTTTAAGCGATCTCTGCATACATGATGGGAAACTTGTAGGTGGTGCTTATTACCAAAACTATGTTGGAGTATGGGTTGCAGATGTTTCG..........................................................................................................................CTTATTGATCCCCATGGAGCTGGTTTAACTCCAGATAGACAAAGTAACTTGGAGCAGAAACAGGACCACGTGGAGAGTCGTTTAGAAAGAATAGGAAGCAACAGAAGTTCTAATTCAAATCTTCGCTGCTCATCACCTGATATTGATTCCAAGGAAATAAAGAATATATATGTGGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAATCCTGTTACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAGATTCTAAGGAAAACAAGAAACAGTTGAGTCAGAAGCTTAATTCTGTCGTTGGTTTACCTGCAAAAACTAATGGATTGCCAGTAGGTAAATCATTTGTTGTCCCCAGTGTGGTACCTCGTGATATTCCAGAGGAGAAGAACTTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGAGTAAGTAGTGGTATATCACAAAAGCCATCTCACATAAAGTGCCCATCCAGCAACAACTATGATATGGAGAAGATTTCTGTGGCTCTTCAGTCAGAATTTGCAGACAACTTGCTGCGTACAGTAGATTGTAAGAAGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700774" ref_strand="+" ref_description="SGN-E700774 [FA14AE07]">
      <seq>attaatagcaggcttatggcagataatgattccagagaacgttccgaggcaaaagattctgctggcaagcatggtggagaaaagctagagaaaacttcattgcaaccaccgctgaatagtcgggagaaccgtaatgtgggttcagaaggtaggaaagagttgcatccagttagatttgtgaatggagtggcggtagtgcgaggaaggacgcgcagtttggttgagaggtttgagaaaagagaagggttgaacatagatgatgtccataagctggatgtggtgtctcattctaaaactgaggaaacagatgtatcccctttgccaccttcttgttgtaaagatgaggaactagaaaccttttccacaaaatttgaagaagaaccagaaacatcacctttgacagcttctcgttttaaaacagaggaagcaatgcgccccatgcctctagctcattcgaaagttgaggaaacaaattcatctgctttgccagcttctcaatatgaagttgaggacttagaagcatcccataagccagcttctaaatctaaatctgaggaagtaagaaaaaaccatttaccagcttctcattctgaagctgagaaattagaggcatcccttatgctagcttctcagtttaaatacgaggaagttagagaatcccatttaccagcttcttgctctaaacctgaggaatttgaagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="22895" stop="24835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23195" g_stop="23324" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23325" i_stop="23855" i_length="531">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23856" g_stop="23912" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="187" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23913" i_stop="24018" i_length="106">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24019" g_stop="24535" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="704" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E700774" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23195" e_stop="23324"/>
          <exon e_start="23856" e_stop="23912"/>
          <exon e_start="24019" e_stop="24535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATAGCAGGCTTATGGCAGATAATGATTCCAGAGAACGTTCCGAGGCAAAAGATTCTGCTGGCAAGCATGGTGGAGAAAAGCTAGAGAAAACTTCATTGCAACCACCGCTGAATAGTCGGGAGAACCGTTAGTTCTAAATACTCTTTATTTGAATTGACTTTTGAGCTCTCTATGGTCTGTTTCCGTGTTGTACAGTTTTCTGCATTCTTCCTCGGAGGTTTTCTGCTAATTTTGGGCTGGTGATCTCTATTTTAGTTACAGGTTTTCTTCATCTTAAGGGATTTGCTCATTAAAACTTGCCTTAAAATAAAACATTAAACTACAAGATATTTCTAGTTTGTATTTGACCAGTGTTCAGAATTTTATGGCGAAGTATTGTAAGAATGTTCAAATTTTTATTTTTATTTTTCCTGATCAGTGCTATGATGTGAAATGTTTTTGAAAAGTCAAAATTAGCTAGCGAAATCATGCTGGCTGAAATAATCATTTTCTGCTTTTGCTTGACACTCTGTAAGTTGCTTGTATGCACTTCCTGGTTTGCTTACATTTCAGTTCTTCTTTAGGTTTATAGTTTTGTACTTGGCCTTTTCTTTGCATATATAGATGCATAAGTTAGAAGCATGAAAACAATATTAATTTAATTTCATTATGTTTCAGGTAATGTGGGTTCAGAAGGTAGGAAAGAGTTGCATCCAGTTAGATTTGTGAATGGAGGTTAGTGTCTGATAAAACTATGCTGTAAGAAAAGGAAATTTCAAACAGTCCTTTTTTTTTTTGTACGAGAAAATCCAACATTGTAACTAATGTTTTGTTATGGCAGTGGCGGTAGTGCGAGGAAGGACGCGCAGTTTGGTTGAGAGGTTTGAGAAAAGAGAAGGGTTGAACATAGATGATGTCCATAAGCTGGATGTGGTGTCTCATTCTAAAACTGAGGAAACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAGGAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCTTCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAGGAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCCCATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCTCATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAGGAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATC</genome_strand>
        <mrna_strand>ATTAATAGCAGGCTTATGGCAGATAATGATTCCAGAGAACGTTCCGAGGCAAAAGATTCTGCTGGCAAGCATGGTGGAGAAAAGCTAGAGAAAACTTCATTGCAACCACCGCTGAATAGTCGGGAGAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGGGTTCAGAAGGTAGGAAAGAGTTGCATCCAGTTAGATTTGTGAATGGAG..........................................................................................................TGGCGGTAGTGCGAGGAAGGACGCGCAGTTTGGTTGAGAGGTTTGAGAAAAGAGAAGGGTTGAACATAGATGATGTCCATAAGCTGGATGTGGTGTCTCATTCTAAAACTGAGGAAACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAGGAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCTTCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAGGAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCCCATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCTCATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAGGAAGTTAGAGAATCCCATTTACCAGCTTCTTGCTCTAAACCTGAGGAATTTGAAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334707" ref_strand="+" ref_description="SGN-E334707 [cTOD-23-J16]">
      <seq>acagatgtatcccctttgccaccttcttgttgtaaagatgaggaactagaaaccttttccacaaaatttgaagaagaaccagaaacatcacctttgacagcttctcgttttaaaacagaggaagcaatgcgccccatgcctctagctcattcgaaagttgaggaaacaaattcatctgctttgccagcttctcaatatgaagttgaggacttagaagcatcccataagccagcttctaaatctaaatctgaggaagtaagaaaaaaccatttaccagcttctcattctgaagctgagaaattagaggcatcccttatgctagcttctcagtttaaatacgaggaagttagagaatcccatttaccagcttcttgttctaaagctgaggaatttgaagcatcccctatcctagcttcacaggttaaatctgaggatgtaaggaagtctcgtttgccaacttctcgttctagaactggggaattaggagcatcctctataccagcttcacagcttaaacctgagaatgtaagaagatcccgtttatcagcttctcgttctaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="23835" stop="24998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24135" g_stop="24698" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E334707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24135" e_stop="24698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAGGAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCTTCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAGGAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCCCATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCTCATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAGGAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATCCCCTATCCTAGCTTCACAGGTTAAATCTGAGGATGTAAGGAAGTCTCGTTTGCCAACTTCTCGTTCTAGAACTGGGGAATTAGGAGCATCCTCTATACCAGCTTCACAGCTTAAACCTGAGAATGTAAGAAGATCCCGTTTATCAGCTTCTCGTTCTAAAGCT</genome_strand>
        <mrna_strand>ACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAGGAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCTTCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAGGAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCCCATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCTCATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAGGAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATCCCCTATCCTAGCTTCACAGGTTAAATCTGAGGATGTAAGGAAGTCTCGTTTGCCAACTTCTCGTTCTAGAACTGGGGAATTAGGAGCATCCTCTATACCAGCTTCACAGCTTAAACCTGAGAATGTAAGAAGATCCCGTTTATCAGCTTCTCGTTCTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537877" ref_strand="+" ref_description="SGN-E537877 [TUS-56-L7]">
      <seq>ctgtttctaagtttagaagtggaacaagaacatcccgtttgtcggcttttcgttcaaaagctgaggaagctaaaacatcacgattattagcttctcgttctaaagctgaggaggcacaaacattgcgcctgttgtcttctggttctaatgctgagcaaccacaaatagctcctttgccggatgctaatcagcagatcattgcacggtgtgagccagtgcagaatgatgatatcattattgaagatcttatgcaacgccatgatgtgctgctaaattcgtttagatctcgtttgacaaagctgcaggtagttcgtcactactgggaacggaatgacatcaggggtgcttttgaggccttgaggaagttgtcagattattctgtgcaagctgatgttgtgagtgtcctcgtagataaaatggagattatcactttggatttgttttccttcttgttgcctgtactgttagccttacttgaaactaagatagaaaggcatgcaaatgtttccctggagctgttgttgaaacttattgcagtctttggaccagtagttcgctcagccgcttcagcacgtccatctgttggggttgatcttcatgcagaagcaagaattaagtgctgcaggcagtgctttgcctacctccaagatatacagaaaacacttcctgaacttataaggggagggggtcagccggcaaaaggtgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="24424" stop="27905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24724" g_stop="24902" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24903" i_stop="25413" i_length="511">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25414" g_stop="25539" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="305" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25540" i_stop="25793" i_length="254">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25794" g_stop="25868" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="380" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25869" i_stop="25962" i_length="94">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25963" g_stop="26075" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="493" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26076" i_stop="26641" i_length="566">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26642" g_stop="26758" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="610" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26759" i_stop="26863" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26864" g_stop="26932" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="679" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26933" i_stop="27575" i_length="643">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27576" g_stop="27605" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="709" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E537877" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24724" e_stop="24902"/>
          <exon e_start="25414" e_stop="25539"/>
          <exon e_start="25794" e_stop="25868"/>
          <exon e_start="25963" e_stop="26075"/>
          <exon e_start="26642" e_stop="26758"/>
          <exon e_start="26864" e_stop="26932"/>
          <exon e_start="27576" e_stop="27605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGTTCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAGGCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCTTTGCCGGTATTGATCTTGTGCCATCTATAGTTGATTGTTTCTTCTTTCGTTGTGTTTTGTTGAAATTTTGAGATTGCCTGGTCTTATCTGATATACCTTTACATTCTGTCTAAGCGATGCCACGAATGCTGAAATACATGTCCTCCGCTGTGCTATGTAAATTATGTGAGCCTAAAAAAATCTATCATAGCTAGTGCACTTGTTAGGAATCAATTGTTCCGTATCTAATTCATCTACTAGGAATGTGGTTTAAACTTTTAAACAGGTGATGAGAGAATTTGGTGCTCTCTGGTTTTGTTAACAGAAAGAATTCTCCTAGAATTACATGTTCCAGGCTTTATTTTTTTCTTCCGTCTCATAAGTTGACATAGGGAAATGGCAGTGGAGTTGGGGTCACTACGGTTTTCACTTGTAACATTGATTTTATTGCAGCCTTCTCTTTCAATATTTCAATCTTATTTGGTAAATACTTTCTCACCATTGGCACAACTCTCTTATGTTATTTGCCTACATGCAGGATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATCATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTGACAAAGCTGCAGGTAACCTTTAGCTTATATTTTTTATAGTTTGAGCTTATGTCTACACGTGTCACACATATACTGGTTTCTGCATTCCTAACTTTATCTTAATAGGATTTAACTCTTTAGAAACGTCAGTCTAATGTTGACAGCGTGGAATGTAATTCTTGTAGGAATTGGAAGATCTTTTAATTGATACTTATGATATAGGAAAAACTGTGTGTGATCCTGTAATGCTTGAAGCCTCTTACAAGTATGGTCTTTTAAACTCACAGGTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAGGCCTTGAGGAAGTTGTCAGATTATTCTGTGAGCATTTATTCTTCTGTCATAGTGGTCTCTTCCCAAATATTATATTTGATAAACTCTCTAATGTATTTCTTAAATTTATTTCCTCTTGCAGGTGCAAGCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAGGTACGTAGTGATACAACTCATTGCTTGTTGCCTTAACTGTTTCCAGTTTGACATCCTTCAAATATGATCTAAAAATACTGCTTAAATGATAACTGCGGTATACATGGTGATTATTTATTCTTTGATACATATCATTACCAATCAAGCTCGGGTGACTCTGGTTTTGAATTTCTGGAAAAAAAAAATATTGGTTTTCCTTCTCCATCCTGCCAAACTAGAAGTTTTTGCAAACATGGTAATATATAAATTCGAAAGGTTAGAACAGAAAAGAAGGAACGATACATATCTTGGCAAACCTTGACATTTAACATGGTGGTGAATATTACTTGCTTCAAGGGAAGCATAAGAGATAAAAGGGACTACCTCAGATGGTTTCTTAGCTTTAAACAATTTCTGGTTCTGTCTGTGTGGATATGGGGGTTGCATAGCACACTTATTTATTTCATTGAATTCTGCTGTTAATTTTTATTTTATTTTCTGATTGCGCTGTTAAATTTTATAGTTATATTTTTTTAAAATTTCTTATTCACATGTTGATTGCTTCTGTCTTTTTTACTCTTCTTTAGGCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCTTCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAGGTAATGATGCTTATGTGGCTAAGCAGTTCACTTCTTGTTTATATGCTTGGATGCTGGTAAATACAAAACACTTACCTGTCTTCGATTTTGTACACTGTAAAACAGAATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAGGTAACTAAGAATCTACTTTTTTACTTTTCATAATTATGTTTGTTGTCATGAATTTATTTTATGGGTGGTCCAACTCATCCTCTCTTTATCTGGGATAGAGTTACTAGAATCCCAATAGAGCTTCAAAGTCAGAAAAATGGCAAGTATAGTGCCTCATTATGTTTGAGCCATCGATTAAGGTGTTGTAAGCATACTTCACAGTCAATGATGCACAACAAACTTCAAACCTAGTAAGAAAATGAGAATCTTTTGGTTTTAACTTTCATTGGACAATTGTTATGATCAAAGAATGGTGGATTTGCTATCATTGTGATTTATCACAAGTTTTGTATATTGAAATACGTTTGCTTCTATCATGGTAGCTTAGTAACTAGTGAATCAAATTGTTCTGATGCTTCATGATTAATGCTATCTGAATATGTTTGGTTTGTGGGTAAGACATTCAAGGCTTGATATCTAATACAATAGGTCCATGTTGAACTTTTGACATTTTAAAGTAGATGGATGCAACTTGTTGTCGAATAGGACTTCCCTTTGATATCTTTACCTTCTTTTGTTACATATCTAATGCAAGCTAAAAAGTCGAAATTCCTTATGTCTTGATGTTGCTTGCTATCTAAATTTCGCTTACGCTCTGTTGTAGGGGAGGGGGTCAGCCGGCAAAAGGTGCAGT</genome_strand>
        <mrna_strand>CTGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGTTCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAGGCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCTTTGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATCATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTGACAAAGCTGCAG..............................................................................................................................................................................................................................................................GTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAGGCCTTGAGGAAGTTGTCAGATTATTCT..............................................................................................GTGCAAGCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTATTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCTTCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAG.........................................................................................................AATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGGGGTCAGCCGGCAAAAGGTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265466" ref_strand="+" ref_description="SGN-E265466 [cLEI-9-H20]">
      <seq>tgtttctaagtttagaagtggaacaagaacatcccgtttgtcggcttttcgttcaaaagctgaggaagctaaaacatcacgattattagcttctcgttctaaagctgaggaggcacaaacattgcgcctgttgtcttctggttctaatgctgagcaaccacaaatagctcctttgccggatgctaatcagcagatcattgcacggtgtgagccagtgcagaatgatgatatcattattgaagatcttatgcaacgccatgatgtgctgctaaattcgtttagatctcgtttgacaaagctgcaggtagttcgtcactactgggaacggaatgacatcaggggtgcttttgaggccttgaggaagttgtcagattattctgtgcaagctgatgttgtgagtgtcctcgtagataaaatggagattatcactttggatttgttttccttcttgttgcctgtactgttagccttacttgaaactaagatagaaaggcatgcaaatgtttccctggagctgttgttgaaacttattgcagtctttggaccagtagttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="24425" stop="27005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24725" g_stop="24902" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24903" i_stop="25413" i_length="511">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25414" g_stop="25539" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="304" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25540" i_stop="25793" i_length="254">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25794" g_stop="25868" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="379" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25869" i_stop="25962" i_length="94">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25963" g_stop="26075" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="492" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26076" i_stop="26641" i_length="566">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26642" g_stop="26705" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="556" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E265466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24725" e_stop="24902"/>
          <exon e_start="25414" e_stop="25539"/>
          <exon e_start="25794" e_stop="25868"/>
          <exon e_start="25963" e_stop="26075"/>
          <exon e_start="26642" e_stop="26705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGTTCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAGGCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCTTTGCCGGTATTGATCTTGTGCCATCTATAGTTGATTGTTTCTTCTTTCGTTGTGTTTTGTTGAAATTTTGAGATTGCCTGGTCTTATCTGATATACCTTTACATTCTGTCTAAGCGATGCCACGAATGCTGAAATACATGTCCTCCGCTGTGCTATGTAAATTATGTGAGCCTAAAAAAATCTATCATAGCTAGTGCACTTGTTAGGAATCAATTGTTCCGTATCTAATTCATCTACTAGGAATGTGGTTTAAACTTTTAAACAGGTGATGAGAGAATTTGGTGCTCTCTGGTTTTGTTAACAGAAAGAATTCTCCTAGAATTACATGTTCCAGGCTTTATTTTTTTCTTCCGTCTCATAAGTTGACATAGGGAAATGGCAGTGGAGTTGGGGTCACTACGGTTTTCACTTGTAACATTGATTTTATTGCAGCCTTCTCTTTCAATATTTCAATCTTATTTGGTAAATACTTTCTCACCATTGGCACAACTCTCTTATGTTATTTGCCTACATGCAGGATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATCATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTGACAAAGCTGCAGGTAACCTTTAGCTTATATTTTTTATAGTTTGAGCTTATGTCTACACGTGTCACACATATACTGGTTTCTGCATTCCTAACTTTATCTTAATAGGATTTAACTCTTTAGAAACGTCAGTCTAATGTTGACAGCGTGGAATGTAATTCTTGTAGGAATTGGAAGATCTTTTAATTGATACTTATGATATAGGAAAAACTGTGTGTGATCCTGTAATGCTTGAAGCCTCTTACAAGTATGGTCTTTTAAACTCACAGGTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAGGCCTTGAGGAAGTTGTCAGATTATTCTGTGAGCATTTATTCTTCTGTCATAGTGGTCTCTTCCCAAATATTATATTTGATAAACTCTCTAATGTATTTCTTAAATTTATTTCCTCTTGCAGGTGCAAGCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAGGTACGTAGTGATACAACTCATTGCTTGTTGCCTTAACTGTTTCCAGTTTGACATCCTTCAAATATGATCTAAAAATACTGCTTAAATGATAACTGCGGTATACATGGTGATTATTTATTCTTTGATACATATCATTACCAATCAAGCTCGGGTGACTCTGGTTTTGAATTTCTGGAAAAAAAAAATATTGGTTTTCCTTCTCCATCCTGCCAAACTAGAAGTTTTTGCAAACATGGTAATATATAAATTCGAAAGGTTAGAACAGAAAAGAAGGAACGATACATATCTTGGCAAACCTTGACATTTAACATGGTGGTGAATATTACTTGCTTCAAGGGAAGCATAAGAGATAAAAGGGACTACCTCAGATGGTTTCTTAGCTTTAAACAATTTCTGGTTCTGTCTGTGTGGATATGGGGGTTGCATAGCACACTTATTTATTTCATTGAATTCTGCTGTTAATTTTTATTTTATTTTCTGATTGCGCTGTTAAATTTTATAGTTATATTTTTTTAAAATTTCTTATTCACATGTTGATTGCTTCTGTCTTTTTTACTCTTCTTTAGGCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGC</genome_strand>
        <mrna_strand>TGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGTTCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAGGCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCTTTGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATCATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTGACAAAGCTGCAG..............................................................................................................................................................................................................................................................GTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAGGCCTTGAGGAAGTTGTCAGATTATTCT..............................................................................................GTGCAAGCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTATTGCAGTCTTTGGACCAGTAGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E580909" ref_strand="+" ref_description="SGN-E580909 [6152]">
      <seq>tgatgttgtgagtgtcctcagtagataaaatggagattatcactttggatttgttttccttcttgttgcctgtactgttggccttgcttgatactaagatagaaaggcatgcaaatgtttccctggagctgttgttgaaacttgttgcagtctttggaccagtattcgctcagccgtttcagcacgtccatctgtagggttgatcttcatgcagaagcgagaattaagtgctgcagcagtgctttgcctacctccaagatatacagaaaacacttcctgcacttataaggagagggggtctgccgggcaaaggtgcagtacaattaaatctcctacttcaagaatcatagtccagtttatcatatatgcttttcctaatggctaaagcgagacaacggaatgggaagttagctaatataccatgctctcaaacttatgtctctttatggacacccacaattttgctcctcggtgtttccatccttggctacccattttcaccaacgttgtaaacagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="25671" stop="28101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25971" g_stop="26075" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26076" i_stop="26641" i_length="566">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26642" g_stop="26758" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="221" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26759" i_stop="26863" i_length="105">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26864" g_stop="26932" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="289" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26933" i_stop="27575" i_length="643">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27576" g_stop="27801" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="519" r_length="230" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E580909" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25971" e_stop="26075"/>
          <exon e_start="26642" e_stop="26758"/>
          <exon e_start="26864" e_stop="26932"/>
          <exon e_start="27576" e_stop="27801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTGTGAGTGTCCTC-GTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAGGTACGTAGTGATACAACTCATTGCTTGTTGCCTTAACTGTTTCCAGTTTGACATCCTTCAAATATGATCTAAAAATACTGCTTAAATGATAACTGCGGTATACATGGTGATTATTTATTCTTTGATACATATCATTACCAATCAAGCTCGGGTGACTCTGGTTTTGAATTTCTGGAAAAAAAAAATATTGGTTTTCCTTCTCCATCCTGCCAAACTAGAAGTTTTTGCAAACATGGTAATATATAAATTCGAAAGGTTAGAACAGAAAAGAAGGAACGATACATATCTTGGCAAACCTTGACATTTAACATGGTGGTGAATATTACTTGCTTCAAGGGAAGCATAAGAGATAAAAGGGACTACCTCAGATGGTTTCTTAGCTTTAAACAATTTCTGGTTCTGTCTGTGTGGATATGGGGGTTGCATAGCACACTTATTTATTTCATTGAATTCTGCTGTTAATTTTTATTTTATTTTCTGATTGCGCTGTTAAATTTTATAGTTATATTTTTTTAAAATTTCTTATTCACATGTTGATTGCTTCTGTCTTTTTTACTCTTCTTTAGGCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCTTCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAGGTAATGATGCTTATGTGGCTAAGCAGTTCACTTCTTGTTTATATGCTTGGATGCTGGTAAATACAAAACACTTACCTGTCTTCGATTTTGTACACTGTAAAACAGAATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAGGTAACTAAGAATCTACTTTTTTACTTTTCATAATTATGTTTGTTGTCATGAATTTATTTTATGGGTGGTCCAACTCATCCTCTCTTTATCTGGGATAGAGTTACTAGAATCCCAATAGAGCTTCAAAGTCAGAAAAATGGCAAGTATAGTGCCTCATTATGTTTGAGCCATCGATTAAGGTGTTGTAAGCATACTTCACAGTCAATGATGCACAACAAACTTCAAACCTAGTAAGAAAATGAGAATCTTTTGGTTTTAACTTTCATTGGACAATTGTTATGATCAAAGAATGGTGGATTTGCTATCATTGTGATTTATCACAAGTTTTGTATATTGAAATACGTTTGCTTCTATCATGGTAGCTTAGTAACTAGTGAATCAAATTGTTCTGATGCTTCATGATTAATGCTATCTGAATATGTTTGGTTTGTGGGTAAGACATTCAAGGCTTGATATCTAATACAATAGGTCCATGTTGAACTTTTGACATTTTAAAGTAGATGGATGCAACTTGTTGTCGAATAGGACTTCCCTTTGATATCTTTACCTTCTTTTGTTACATATCTAATGCAAGCTAAAAAGTCGAAATTCCTTATGTCTTGATGTTGCTTGCTATCTAAATTTCGCTTACGCTCTGTTGTAGGGGAGGGGGTCAGCCGGCAAAAGGTGCAGTACAATTAAATCTCCTACTTCAAGAATCATAGTCCAGTTTATGATATATGCTTTTCCTAATGGCTAAAGCGAGACAACGGAATGGGAAGTTAGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCTCGG-GTTTCCGTCCTT-GCTA-CCATTTTCACCAACCTTGT-AACAGCGG</genome_strand>
        <mrna_strand>TGATGTTGTGAGTGTCCTCAGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTGGCCTTGCTTGATACTAAGATAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTA-TTCGCTCAGCCGTTTCAGCACGTCCATCTG-TAGGGTTGATCTTCATGCAGAAGCGAG.........................................................................................................AATTAAGTGCTGCA-GCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGCACTTATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGGGGTCTGCCGGGCAAAGGTGCAGTACAATTAAATCTCCTACTTCAAGAATCATAGTCCAGTTTATCATATATGCTTTTCCTAATGGCTAAAGCGAGACAACGGAATGGGAAGTTAGCTAATATACCATGCTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCTCGGTGTTTCCATCCTTGGCTACCCATTTTCACCAACGTTGTAAACAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537874" ref_strand="+" ref_description="SGN-E537874 [TUS-56-L7](-)">
      <seq>cagcacgtccatctgttggggttgatcttcatgcagaagcaagaattaagtgctgcaggcagtgctttgcctacctccaagatatacagaaaacacttcctgaacttataaggggagggggtcagccggcaaaaggtgcagtacaattaaatctcctacttcaagaatcatagtccagtttatgatatatgcttttcctaatggctaaagcgagacaacggaatgggaagttagctactatacaatgttctcaaacttatgtctctttatggacacccacaattttgctcctcgggtttccgtccttgctaccattttcaccaaccttgtaacagcggaaaattggcaagatggaaatgcagtgtctgtcctccgccactgcaactgggttgggaggcaaaggtaaaaactctcgacataatatatccttttgttggagagtagcatcgctatcttcattcagatacgcggcttgaacatattcaaagttcctggctgtatgtgtccatccatatgtaagttgtgtacatgtatctgcaatagtaaaaaaaaattggatgagatgtgtacatcatttgatcaatgaaacagagattcatacacacaccttctcttgctatcaaaactcaatattgaatttcttctcaaaaaaaaaaaaaaaaaactcggagaactagtctcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="26416" stop="50317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26716" g_stop="26758" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26759" i_stop="26863" i_length="105">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26864" g_stop="26932" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="112" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26933" i_stop="27575" i_length="643">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27576" g_stop="28112" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="648" r_length="536" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28113" i_stop="29462" i_length="1350">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.49"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29463" g_stop="29507" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="694" r_length="46" r_score="0.489"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E537874" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26716" e_stop="26758"/>
          <exon e_start="26864" e_stop="26932"/>
          <exon e_start="27576" e_stop="28112"/>
          <exon e_start="29463" e_stop="29507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAGGTAATGATGCTTATGTGGCTAAGCAGTTCACTTCTTGTTTATATGCTTGGATGCTGGTAAATACAAAACACTTACCTGTCTTCGATTTTGTACACTGTAAAACAGAATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAGGTAACTAAGAATCTACTTTTTTACTTTTCATAATTATGTTTGTTGTCATGAATTTATTTTATGGGTGGTCCAACTCATCCTCTCTTTATCTGGGATAGAGTTACTAGAATCCCAATAGAGCTTCAAAGTCAGAAAAATGGCAAGTATAGTGCCTCATTATGTTTGAGCCATCGATTAAGGTGTTGTAAGCATACTTCACAGTCAATGATGCACAACAAACTTCAAACCTAGTAAGAAAATGAGAATCTTTTGGTTTTAACTTTCATTGGACAATTGTTATGATCAAAGAATGGTGGATTTGCTATCATTGTGATTTATCACAAGTTTTGTATATTGAAATACGTTTGCTTCTATCATGGTAGCTTAGTAACTAGTGAATCAAATTGTTCTGATGCTTCATGATTAATGCTATCTGAATATGTTTGGTTTGTGGGTAAGACATTCAAGGCTTGATATCTAATACAATAGGTCCATGTTGAACTTTTGACATTTTAAAGTAGATGGATGCAACTTGTTGTCGAATAGGACTTCCCTTTGATATCTTTACCTTCTTTTGTTACATATCTAATGCAAGCTAAAAAGTCGAAATTCCTTATGTCTTGATGTTGCTTGCTATCTAAATTTCGCTTACGCTCTGTTGTAGGGGAGGGGGTCAGCCGGCAAAAGGTGCAGTACAATTAAATCTCCTACTTCAAGAATCATAGTCCAGTTTATGATATATGCTTTTCCTAATGGCTAAAGCGAGACAACGGAATGGGAAGTTAGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCTCGGGTTTCCGTCCTTGCTACCATTTTCACCAACCTTGTAACAGCGGAAAATTGGCAAGATGGAAATGCAGTGTCTGTCCTCCGCCACTGCAACTGGGTTGGGAGGCAAAGGTAAAAACTCTCGACATAATATATCCTTTTGTTGGAGAGTAGCATCGCTATCTTCATTCAGATACGCGGCTTGAACATATTCAAAGTTCCTGGCTGTATGTGTCCATCCATATGTAAGTTGTGTACATGTATCTGCAATAGTAAAAAAAAATTGGATGAGATGTGTACATCATTTGATCAATGAAACAGAGATTCATACACACACCTTCTCTTGCTATCAAAACTCAATATTGAACTTTCTTCTCAAGTCACTATAAGCCTATACTGGTAAGTTTAATTTTTAATTGCAGACTTAGATGATTGTCATTATACAATTAGACTCCTTTTGTGGAGTACATAGGCCGTTTTCAAATGAAGGTATCTACAATATTTTGGAAATTTTATTAGGAAATCGAATTTATTTTTTCAAAAATAATAAGGATGTACTGTATAAGGCTATGACTAAAGTTGAAATGATGTTCACAAACTCTGATTACAAATGACGCCATAGATTAAGAGGTTAACTACAATCCTAAGTTAGTGTTCTATGGTCTATACGTATAGTATATGTTTTAGATAATCGTTTTTCATGGGAAATATTTTTTTTCTTTCGTTTTCTTGTGCTGATACGTATGCAAAAAGTATGAAATGCCACATGTGAATATATTCGTTTTACTTTTATTAAAGTCATTTTTCTCATTTCTAAAGAATTTATTTTTTTTGAGATATTTTTCCTCTCGACCCAACACATCCTAAAGTAGAAAGGACGTTCACGTTATATGTTTCATTCAATTTATTGGTTAAACAAATGCTTGTCTTAGGAGATTAAATCACGCAATTCCCTTCCTTTTTCATCTTTTTTTTCTGGAATTAGTTGAAGTTAGAAGGTAGAAAGGAATAAAAATCGATCAATTTAAGCTATTAAAGTAAGTACTTAAGGCACAATTATATGTCTGAATCAGTTAAAAAAAATAGTAGGCACTTCATGTGAAAGGTATTTTAATATTGACCCTAAAACGACCTTAATCCAAGTATATCACTCGCACAAATTTTGCTACGTTGGTTAGTTTTTTATTCTTCATGGAAGTTTCTTGTCCCCTATCATTGTTTATCGACTGCTATTGTTGCTAGTAAATTTTACGTAAGACTTTGATATGTTTTAATTGAGCAAACGATAAAATATTCTTGTTAGACATTTTCGGCTCAAATATTTTTATGAATATCCCCAAGTGCTCATTATATAAACAAGTTAATCACTTAAAATATGTTGCTTCTCTTATTTGTAAGTCGAAAGGTCTCAAGCCTATCTGATTTGAAGCTCATGTATATGACTAAAGTAGGTGATATATTTTATGTGATTAACATACAAAAGTTTTTTCTAGAATCTAAAATGAAATAAAATAAAAACTTTCACATATAACAAACGTAAAAATCATATTCGTATGTTATAGCAACAATTTTGCATAATTGCGCTTCATAGCGAACTTTACTTTGCTATTTCGCTATACATATATACAAAAGGCAGTGGTTATGCATATATACAAACGAAGCAATTATATAATCTGTTTCGGTATACATATACAAAAGAATCAATTGTATAATTTGTGTTTGTAAAAAGTGAAAAAGAGAGAAAGCCAAAAGAA-AACTGAGCAGGGAAAGATCG</genome_strand>
        <mrna_strand>CAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAG.........................................................................................................AATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGGGGGTCAGCCGGCAAAAGGTGCAGTACAATTAAATCTCCTACTTCAAGAATCATAGTCCAGTTTATGATATATGCTTTTCCTAATGGCTAAAGCGAGACAACGGAATGGGAAGTTAGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCTCGGGTTTCCGTCCTTGCTACCATTTTCACCAACCTTGTAACAGCGGAAAATTGGCAAGATGGAAATGCAGTGTCTGTCCTCCGCCACTGCAACTGGGTTGGGAGGCAAAGGTAAAAACTCTCGACATAATATATCCTTTTGTTGGAGAGTAGCATCGCTATCTTCATTCAGATACGCGGCTTGAACATATTCAAAGTTCCTGGCTGTATGTGTCCATCCATATGTAAGTTGTGTACATGTATCTGCAATAGTAAAAAAAAATTGGATGAGATGTGTACATCATTTGATCAATGAAACAGAGATTCATACACACACCTTCTCTTGCTATCAAAACTCAATATTGAA-TTTCTTCTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCGGAGAACTAGTCTCGAGGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425156" ref_strand="+" ref_description="SGN-E425156 [STM-44-L11]">
      <seq>catctttttttgtatgaatatctgtttcatttatcaaatgatgtacacatctcatccaattttttactattgcagatacatgtacacaacttacatatggatggatacatacagccaggaactttgaatatgttcaagacgcgtatctgaatgaagatagccatgctactctccaacaaaaggtgatattatgtcgagaatttttacctttgcctctcaaaccagttgcagtggcggaggacagacactgcatttccatcttgctagttttccgctgttacatggttggtgaaaatggtagcaaggatggaaacccaaggagcaaaattgtgggtgtccataaagagacataagtttgagaacatggtatattagctaacttcccattccattgtctcgcttagccattaggaaaagcatatatgataaactggactatgattcttgaagtaagagatttaattgtactgcaccttttgccggcagaccccctctccttataagtgcaagaagtggtttccggatatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="28369" stop="27270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28075" g_stop="27564" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E425156" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28075" e_stop="27564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTGTGTGTATGAATCTCTGTTTCATTGATCAAATGATGTACACATCTCATCCAATTTTTTTTTACTATTGCAGATACATGTACACAACTTACATATGGATGGACACATACAGCCAGGAACTTTGAATATGTTCAAGCCGCGTATCTGAATGAAGATAGCGATGCTACTCTCCAACAAAAGGATATATTATGTCGAGAGTTTTTACCTTTGCCTCCCAACCCAGTTGCAGTGGCGGAGGACAGACACTGCATTTCCATCTTGCCAATTTTCCGCTGTTACAAGGTTGGTGAAAATGGTAGCAAGGACGGAAACCCGAGGAGCAAAATTGTGGGTGTCCATAAAGAGACATAAGTTTGAGAACATTGTATAGTAGCTAACTTCCCATTCCGTTGTCTCGCTTTAGCCATTAGGAAAAGCATATATCATAAACTGGACTATGATTCTTGAAGTAGGAGATTTAATTGTACTGCACCTTTTGCCGGCTGACCCCCTCCCCTACAACAGAGC</genome_strand>
        <mrna_strand>CATCTTTTTTTGTATGAATATCTGTTTCATTTATCAAATGATGTACACATCTCATCCAA---TTTTTTACTATTGCAGATACATGTACACAACTTACATATGGATGGATACATACAGCCAGGAACTTTGAATATGTTCAAGACGCGTATCTGAATGAAGATAGCCATGCTACTCTCCAACAAAAGGTGATATTATGTCGAGAATTTTTACCTTTGCCTCTCAAACCAGTTGCAGTGGCGGAGGACAGACACTGCATTTCCATCTTGCTAGTTTTCCGCTGTTACATGGTTGGTGAAAATGGTAGCAAGGATGGAAACCCAAGGAGCAAAATTGTGGGTGTCCATAAAGAGACATAAGTTTGAGAACATGGTATATTAGCTAACTTCCCATTCCATTGTCTCGC-TTAGCCATTAGGAAAAGCATATATGATAAACTGGACTATGATTCTTGAAGTAAGAGATTTAATTGTACTGCACCTTTTGCCGGCAGACCCCCTCTCCT-TATAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737561" ref_strand="+" ref_description="SGN-E737561 [LC10BD03]">
      <seq>gcgctactctggatgcactgctttgtttgaagagttgcggaaacgacgactcgaagaattgaagcgggatttggtgagatctgagagctccattgggtcacttgagtcaaagattgaaaggctacaggctgagagagagcgatctgatcagatagactacggtttgagtcgcactaaatctcctgctcctcagacaaaatcagaagatatcgagtcttctgtgaaagaagaagcaaaggatgggttgtctgctggcagcttcacgcttgatattagaacaaacgggtcctccgagtcttaggttcccaccataccctcagctacagaggcagtcgtgaagctagaactttcagagttttggggacgggacaaagctccaagtacaagcaaggttccagagtctgcgaatggaaatggtggggctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="33976" stop="35489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34276" g_stop="34293" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34294" i_stop="34553" i_length="260">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.914" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34631" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34632" i_stop="34857" i_length="226">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34858" g_stop="35189" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="428" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E737561" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34276" e_stop="34293"/>
          <exon e_start="34554" e_stop="34631"/>
          <exon e_start="34858" e_stop="35189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTACTCTGGATGCACGTGAGTGAAGTTCTTCGATATCATGATTCTATTTGTTTATTAATGAGTTAGTTACCATGGAAGTTATGGCTTCTGACATATGACACATGTATGATTTTTGCTTCCATCTAATGTATGGAGTACACAATTCACTGAGATATTTGATCTTGCCTTCAGCTCTGGAATGAATTCATGGTTCCATTAGTTACTGTGAGTTGAATATAATAGGATGCCATCCTTGCCCTAACCAGTGTCTTACTTGTATAACCTTCTTTGGCCAGTGCTTTGTTTGAAGAGTTGCGGAAACGACGAGTGGAAGAATTGAAGCGGGAATTGGTGAGATCTGAGAGCTCCATTGGGTTAGTAAATATGTTTCTTCCTGTTTTAAGTTGATAAGCAAACACTGGCTAATAAATCACTTCATTAATGAATCCTGATGTTTTTGCCAATATTTCATGCATCTGAATGGCATAAAAATCCTGTCTCATTACATTACTACTGCCTCAAGTCTCTGGTTCCCTTAGTTATCTGTATCCTTAGAGTAACTCTGTGATTCTCATATTTTATCTCGACGCTCATTGTCAGGTCACTTGAGTCAAAGATTGAAAGGCTACAGGCTGAGAGAGAGCGATCTGATCAGATAGACCACGGTTTGAGTCGCACTAAATCTCCTGCTCCTCAGACAAAATCAGAAGATATCGAGTCTTCTGTGAAAGAAGAAGCAAAGGATGGGTTGTCTGCTGGCAGCTTCACGCTTGATATTAGAACAAACGGGTCCTCCGAGTCTCAGGTTCCCACCATACCCTCAGCTACAGAGGCAGTCGTGAAGCTAGAACTTTCAGAGTTTTGGGGACGGGACAAAGCTCCAAGTACAAGCAAGGTTCCAGAGTCTGCGAATGGAAATGGTGGGGCTGTGA</genome_strand>
        <mrna_strand>GCGCTACTCTGGATGCAC....................................................................................................................................................................................................................................................................TGCTTTGTTTGAAGAGTTGCGGAAACGACGACTCGAAGAATTGAAGCGGGATTTGGTGAGATCTGAGAGCTCCATTGG..................................................................................................................................................................................................................................GTCACTTGAGTCAAAGATTGAAAGGCTACAGGCTGAGAGAGAGCGATCTGATCAGATAGACTACGGTTTGAGTCGCACTAAATCTCCTGCTCCTCAGACAAAATCAGAAGATATCGAGTCTTCTGTGAAAGAAGAAGCAAAGGATGGGTTGTCTGCTGGCAGCTTCACGCTTGATATTAGAACAAACGGGTCCTCCGAGTCTTAGGTTCCCACCATACCCTCAGCTACAGAGGCAGTCGTGAAGCTAGAACTTTCAGAGTTTTGGGGACGGGACAAAGCTCCAAGTACAAGCAAGGTTCCAGAGTCTGCGAATGGAAATGGTGGGGCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211675" ref_strand="+" ref_description="SGN-E211675 [cLEC-67-J2]">
      <seq>actttccaacaatttcgtctctctcaaagactctttcttttgcctaaccctcctcctccttctttaaccccacccccacctacaccccctaccccccccactgctaccctttgttcacttctttcaatatctatactgtatctatatgcttacctatacatatatgtagatttgtcccattttctgttctgtttttgctgataaagacttgaacttgttcttcaaggttcactttttttttcacttttcaagattctggagctgttgggttgctattttgctacaaacccttgttgggttttcagttcttgagtgttcgatgagaactttttctgtttcatattcgcctgcaacaggcaattaaattatggcggtgtttctgctgaagaaaaggagtgttctccttgacgggggaacatgtggagtaaagatgagacagctaccatttatgtggatcatctgtatagttatgttgtttattgtatataggaccaccaattatcagtatcaacagacagagatggagtcaaggttggatccgttttattcttcaaaggactctagtatggatatgagaagcttgcacagtttaccgcgtggtattatccaagcaagatcagatctggagttaaagcctctgtggtcaacaactagttcnaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44247" stop="48039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44547" g_stop="44859" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46556" g_stop="46654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="412" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="520" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47100" g_stop="47135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="556" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47422" g_stop="47538" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="673" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47690" g_stop="47739" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="723" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E211675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44547" e_stop="44859"/>
          <exon e_start="46556" e_stop="46654"/>
          <exon e_start="46754" e_stop="46861"/>
          <exon e_start="47100" e_stop="47135"/>
          <exon e_start="47422" e_stop="47538"/>
          <exon e_start="47690" e_stop="47739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCCAACAATTTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAGGTATGTTTTCAATCTTTCTTGGTTCTTGATTTTTGGTGCTGTTATGGAGGTTGTTGAGTAATGACAATTAAGCCCATGGTGGAGTTGGGTGTGATTGTTCTTGAAAAAAGATCAAGTCTTTAATTAATGGGGTGGCGTGAGTTGATCAGATTCATTAGCTTTTCGAAGTTTTATTAATGCTAGTGTTTGTGTAATTAATGGTTGGTTAAGTATGCATTGAATGGTTGTTTGTTGTAATCTTGAAAACTGATTACTTCAAGTAACGTCTTCTCTTCATTTAATTTTGTCCCCTGGTCTTTTGAATTCTCCTATTTTTTGGATCCTATTGAACAATGGTTTCCCTCATCAATAATTTTGAATTCGTTATAGGATTTGCAAAATTTGTAAAAAAAATGAGCAGATGTTAGGAATTTCGTCTGTTTGCTGTGAGCTTTTTTATTTGGAATTAAAAAACTCTGAATCACAATTTTCTTTTTGTAGGGAGGAGGATAGATTTTTGTTAATCACTACTGTTATTTTCCAGATTCATTTATCTAGTTTTACATGGTTCTTAGTTCAACGCAGATAAATATAGAACTATATGAATTGGTTAGATTAAAACATAGAATGTGGGTTGAACAATTTTTTTGGTAGTCTTGATGCCGTGTGAATTGCAAATGTTGTTCCGAGAAAAATTCTGGCATACATGAAAATCAAACAAGGTGACAACTGTTAGTGGAATTCGTCAACTTTGTCAAACGCTTGCGTGTCACTTAATTGTCATATTCTCTGTCTCTACATTCAAATTAGACATCTTATCATTGACAACACTGCCTTTTCCATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAGGTAAATTTTTCTGCCAATGCTTTTTCCGATGGAAAGAGGTCACTTAGCGTTTTTTATCTTTTCCACTCTCCCATAGTATTAGTCCATTTCATTCACCTAGCTACTAGTCCCAAAGTTTTCACACACTCCATTACCTCTTGGGCACATCCAGTCTACCAGTAGCAACCCTGAATTCAAAATGACCTGTCAGTTCTATAATCGTCTCCCAATGTTTCACACGCTTGATTACCTCCAGGGCACATCTAGTCAACCACTAGTGACCACAAATGCAAAATGACCTCTCATTTACAAGCAGATATTGTTGCCTGACTGTGTAGTTGTGTGGGTAACTCATAATTTTGTGATCTAATCAGATTATAGAATATTGGTCGCTAGATCCTTTTTGGGTTTTGTCCATAAATGGTGTCAAAAGAAATTGGTTACTGTATTCATGTGTGTTAATAACCTGTTAAATCGGCTGAGTGAGAGAGTTACTAGGCAATCTTATGTACATTTAAGTTTCATTCCATTTTGGTCAAACTGATAGCTAGCACAACATTCTTTTCCTTGTATGCGTTGTTTGCTAGATACGGAATTCCGTTGGAGATTTTATATTAGAAATAATGTTCATCAGTTAATGAATTGCAGAAAAGAGATAAATGTGTAACGGCTTTAAAATCTATTTTGCTAGATTCTTTGTTAAGACTAGTTGTTGATATGTGTATATTTGTTGCAGTGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGGGTATGTAAATGCTATCTGGTTAGGAATTACTAATGACCTGATTATCTAGCTAACAATCCATAGATTTATTAAACATTAACTTGTGAAATTGAATTGCAGGGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAGGTATGATTGCATTGTACTGCCATTGATTTGCTAACATTTGCTACTTCTAATTTTGACATTTAGAGGGTCGCATGTGAAAGTATAAGAGAGAACTTTCCATTTATCAAACCGAGAGAGGCCAGATGATACACATTTGGTGGCGTACAAGTTTATATATTGACCTTCTAATTGTGCTTTACTTGATTACCCTAATACAATGTTGCTAAAAACATTTTCCTTTCCCTGTTTACCTTTTCAGATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAGGTAGTTATGTTCCTTTTTTTAGAATACTAGATTTTGTACCTTGCACATCACAGGTAGTACCAACAGGATTTATTTTTTGAAATTCAAGAAGTTCTATAATTCATCATTACTATTTCTTGTAATCTAAAGAAGGTGTGCACAACATAAGTAAACAATGGAATACTATAAGTGGTGGAGTGGCATCCGCTTAAATTCAGCACCAAAAAGAATTTATTTTTTTGGGTGAACTAATTTACCCCTAAAAAATCCTTATACCAATGGTGATGCTTTTTATTCTTTCAACCAGGACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAA</genome_strand>
        <mrna_strand>ACTTTCCAACAATTTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGG...................................................................................................GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG..............................................................................................................................................................................................................................................ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG..............................................................................................................................................................................................................................................................................................GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCNAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209425" ref_strand="+" ref_description="SGN-E209425 [cLEC-53-L7]">
      <seq>aacaatttcgtctctctcaaagattctttcttttgcctaaccctcctcctccttctttaaccccacccccacctacaccccctaccccccccactgctaccctttgtgcacttctttcaatatctatactgtatctatatgcttacctatacatatatgtagatttgtcccattttctgttctgttcttgctgataaagacttgaacttgttcttcaaggttcactttttttttcacttttcaagatgctggagctgatgggttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44254" stop="45121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44554" g_stop="44821" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E209425" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44554" e_stop="44821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTA</genome_strand>
        <mrna_strand>AACAATTTCGTCTCTCTCAAAGATTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTGCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTCTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATGCTGGAGCTGATGGGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455257" ref_strand="+" ref_description="SGN-E455257 [cSTS-25-D24]">
      <seq>ttcgtctctctcaaagactctttcttttgcctaaccctccttcttctttaaccccaccccacctatacccctctacccccactgctacccttgtccacttctttcaatatctatactgtatctatatgcttacctatacatatacatagatttgtcccattttctgttctgttttgctgataaagacttgaacttgttcttcaaaggttcactttttttccacttttcaagattctggagctgttgggttgctcttttgctccaaacccttgttgggttttcagttcttgagtgttcgatgagaactttctctgtttcatattcgcctgcaacaggcaattaaattatggcggtgtttctgctgaagaaaaggagtgttctccttgatgggggaacatgtggattaaagatgagacagctaccatttatgtggatcatctgtatagttatgttgtttattgtatataggaccaccaattatcagtatcaacagacagagatggagtcaaggttggatccattttattcttcaaaggactctagtatggatatgagaagcttgcacagtttaccgcgtggtattatccaagcaagatcagatctggagttaaagcctctttggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttgttggcagttccagttggcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44260" stop="48039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44560" g_stop="44859" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46556" g_stop="46654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="391" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="499" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47100" g_stop="47135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="535" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47422" g_stop="47538" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="652" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47690" g_stop="47739" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="702" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E455257" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44560" e_stop="44859"/>
          <exon e_start="46556" e_stop="46654"/>
          <exon e_start="46754" e_stop="46861"/>
          <exon e_start="47100" e_stop="47135"/>
          <exon e_start="47422" e_stop="47538"/>
          <exon e_start="47690" e_stop="47739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTC-AAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAGGTATGTTTTCAATCTTTCTTGGTTCTTGATTTTTGGTGCTGTTATGGAGGTTGTTGAGTAATGACAATTAAGCCCATGGTGGAGTTGGGTGTGATTGTTCTTGAAAAAAGATCAAGTCTTTAATTAATGGGGTGGCGTGAGTTGATCAGATTCATTAGCTTTTCGAAGTTTTATTAATGCTAGTGTTTGTGTAATTAATGGTTGGTTAAGTATGCATTGAATGGTTGTTTGTTGTAATCTTGAAAACTGATTACTTCAAGTAACGTCTTCTCTTCATTTAATTTTGTCCCCTGGTCTTTTGAATTCTCCTATTTTTTGGATCCTATTGAACAATGGTTTCCCTCATCAATAATTTTGAATTCGTTATAGGATTTGCAAAATTTGTAAAAAAAATGAGCAGATGTTAGGAATTTCGTCTGTTTGCTGTGAGCTTTTTTATTTGGAATTAAAAAACTCTGAATCACAATTTTCTTTTTGTAGGGAGGAGGATAGATTTTTGTTAATCACTACTGTTATTTTCCAGATTCATTTATCTAGTTTTACATGGTTCTTAGTTCAACGCAGATAAATATAGAACTATATGAATTGGTTAGATTAAAACATAGAATGTGGGTTGAACAATTTTTTTGGTAGTCTTGATGCCGTGTGAATTGCAAATGTTGTTCCGAGAAAAATTCTGGCATACATGAAAATCAAACAAGGTGACAACTGTTAGTGGAATTCGTCAACTTTGTCAAACGCTTGCGTGTCACTTAATTGTCATATTCTCTGTCTCTACATTCAAATTAGACATCTTATCATTGACAACACTGCCTTTTCCATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAGGTAAATTTTTCTGCCAATGCTTTTTCCGATGGAAAGAGGTCACTTAGCGTTTTTTATCTTTTCCACTCTCCCATAGTATTAGTCCATTTCATTCACCTAGCTACTAGTCCCAAAGTTTTCACACACTCCATTACCTCTTGGGCACATCCAGTCTACCAGTAGCAACCCTGAATTCAAAATGACCTGTCAGTTCTATAATCGTCTCCCAATGTTTCACACGCTTGATTACCTCCAGGGCACATCTAGTCAACCACTAGTGACCACAAATGCAAAATGACCTCTCATTTACAAGCAGATATTGTTGCCTGACTGTGTAGTTGTGTGGGTAACTCATAATTTTGTGATCTAATCAGATTATAGAATATTGGTCGCTAGATCCTTTTTGGGTTTTGTCCATAAATGGTGTCAAAAGAAATTGGTTACTGTATTCATGTGTGTTAATAACCTGTTAAATCGGCTGAGTGAGAGAGTTACTAGGCAATCTTATGTACATTTAAGTTTCATTCCATTTTGGTCAAACTGATAGCTAGCACAACATTCTTTTCCTTGTATGCGTTGTTTGCTAGATACGGAATTCCGTTGGAGATTTTATATTAGAAATAATGTTCATCAGTTAATGAATTGCAGAAAAGAGATAAATGTGTAACGGCTTTAAAATCTATTTTGCTAGATTCTTTGTTAAGACTAGTTGTTGATATGTGTATATTTGTTGCAGTGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGGGTATGTAAATGCTATCTGGTTAGGAATTACTAATGACCTGATTATCTAGCTAACAATCCATAGATTTATTAAACATTAACTTGTGAAATTGAATTGCAGGGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAGGTATGATTGCATTGTACTGCCATTGATTTGCTAACATTTGCTACTTCTAATTTTGACATTTAGAGGGTCGCATGTGAAAGTATAAGAGAGAACTTTCCATTTATCAAACCGAGAGAGGCCAGATGATACACATTTGGTGGCGTACAAGTTTATATATTGACCTTCTAATTGTGCTTTACTTGATTACCCTAATACAATGTTGCTAAAAACATTTTCCTTTCCCTGTTTACCTTTTCAGATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAGGTAGTTATGTTCCTTTTTTTAGAATACTAGATTTTGTACCTTGCACATCACAGGTAGTACCAACAGGATTTATTTTTTGAAATTCAAGAAGTTCTATAATTCATCATTACTATTTCTTGTAATCTAAAGAAGGTGTGCACAACATAAGTAAACAATGGAATACTATAAGTGGTGGAGTGGCATCCGCTTAAATTCAGCACCAAAAAGAATTTATTTTTTTGGGTGAACTAATTTACCCCTAAAAAATCCTTATACCAATGGTGATGCTTTTTATTCTTTCAACCAGGACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAA</genome_strand>
        <mrna_strand>TTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCT--T-CTTCTTTAACCCCA-CCCCACCTATA-CCCCT-CTACCCCCACTGCTACCCTT-GTCCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATACATAGATTTGTCCCATTTTCTGTTCTG-TTTTGCTGATAAAGACTTGAACTTGTTCTTCAAAGGTTCAC-TTTTTTTCCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTCTTTTGCTCCAAACCCTTGTTGGGTTTTCAGTTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATGAGAACTTTCTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGATGGG...................................................................................................GGAACATGTGGATTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG..............................................................................................................................................................................................................................................ATGGAGTCAAGGTTGGATCCATTTTATTCTTCAAAG..............................................................................................................................................................................................................................................................................................GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTTTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTGTTGGCAGTTCCAGTTGGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271776" ref_strand="+" ref_description="SGN-E271776 [cLEM-8-I7]">
      <seq>aaagactctttcttttgcctaaccctcctcctccttctttaaccccacccccacctacacgggctaccccccccactgctaccctttgatcacttctttcaatatctatactgtatctatatgcttacctatacatatatgtagatttgtcccattttctgtactgtttttgctgataaagacttgaacttgttcttcaaggttcactttatttttcacttttcaagattctggagctgttgggttgctattttgctacaaacccttgctgggtttgcagttcttgagtgttcgatgagaactttttctgtttcatattcgcctgcaacaggcaattaaattatggcggagtctctgctgaagaaaaagagtgttctccttgacgggggaacatgtggagtaaagatgagacagctaccatttatgtggatcatctgtatagttatgttgttaatcgtatataagaccaccaattatcagtatcaacagacagagatggagtcaaggttggatccgttttattcttcaaaggactctactatggatatgagaagctagcacagcttaccgcgtggtattatccaagcaagatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44272" stop="47786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44572" g_stop="44859" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46556" g_stop="46654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="387" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="495" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238">
            <donor d_prob="0.916" d_score="0.94"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47100" g_stop="47135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="531" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47422" g_stop="47486" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="596" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E271776" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44572" e_stop="44859"/>
          <exon e_start="46556" e_stop="46654"/>
          <exon e_start="46754" e_stop="46861"/>
          <exon e_start="47100" e_stop="47135"/>
          <exon e_start="47422" e_stop="47486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAGGTATGTTTTCAATCTTTCTTGGTTCTTGATTTTTGGTGCTGTTATGGAGGTTGTTGAGTAATGACAATTAAGCCCATGGTGGAGTTGGGTGTGATTGTTCTTGAAAAAAGATCAAGTCTTTAATTAATGGGGTGGCGTGAGTTGATCAGATTCATTAGCTTTTCGAAGTTTTATTAATGCTAGTGTTTGTGTAATTAATGGTTGGTTAAGTATGCATTGAATGGTTGTTTGTTGTAATCTTGAAAACTGATTACTTCAAGTAACGTCTTCTCTTCATTTAATTTTGTCCCCTGGTCTTTTGAATTCTCCTATTTTTTGGATCCTATTGAACAATGGTTTCCCTCATCAATAATTTTGAATTCGTTATAGGATTTGCAAAATTTGTAAAAAAAATGAGCAGATGTTAGGAATTTCGTCTGTTTGCTGTGAGCTTTTTTATTTGGAATTAAAAAACTCTGAATCACAATTTTCTTTTTGTAGGGAGGAGGATAGATTTTTGTTAATCACTACTGTTATTTTCCAGATTCATTTATCTAGTTTTACATGGTTCTTAGTTCAACGCAGATAAATATAGAACTATATGAATTGGTTAGATTAAAACATAGAATGTGGGTTGAACAATTTTTTTGGTAGTCTTGATGCCGTGTGAATTGCAAATGTTGTTCCGAGAAAAATTCTGGCATACATGAAAATCAAACAAGGTGACAACTGTTAGTGGAATTCGTCAACTTTGTCAAACGCTTGCGTGTCACTTAATTGTCATATTCTCTGTCTCTACATTCAAATTAGACATCTTATCATTGACAACACTGCCTTTTCCATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAGGTAAATTTTTCTGCCAATGCTTTTTCCGATGGAAAGAGGTCACTTAGCGTTTTTTATCTTTTCCACTCTCCCATAGTATTAGTCCATTTCATTCACCTAGCTACTAGTCCCAAAGTTTTCACACACTCCATTACCTCTTGGGCACATCCAGTCTACCAGTAGCAACCCTGAATTCAAAATGACCTGTCAGTTCTATAATCGTCTCCCAATGTTTCACACGCTTGATTACCTCCAGGGCACATCTAGTCAACCACTAGTGACCACAAATGCAAAATGACCTCTCATTTACAAGCAGATATTGTTGCCTGACTGTGTAGTTGTGTGGGTAACTCATAATTTTGTGATCTAATCAGATTATAGAATATTGGTCGCTAGATCCTTTTTGGGTTTTGTCCATAAATGGTGTCAAAAGAAATTGGTTACTGTATTCATGTGTGTTAATAACCTGTTAAATCGGCTGAGTGAGAGAGTTACTAGGCAATCTTATGTACATTTAAGTTTCATTCCATTTTGGTCAAACTGATAGCTAGCACAACATTCTTTTCCTTGTATGCGTTGTTTGCTAGATACGGAATTCCGTTGGAGATTTTATATTAGAAATAATGTTCATCAGTTAATGAATTGCAGAAAAGAGATAAATGTGTAACGGCTTTAAAATCTATTTTGCTAGATTCTTTGTTAAGACTAGTTGTTGATATGTGTATATTTGTTGCAGTGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGGGTATGTAAATGCTATCTGGTTAGGAATTACTAATGACCTGATTATCTAGCTAACAATCCATAGATTTATTAAACATTAACTTGTGAAATTGAATTGCAGGGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAGGTATGATTGCATTGTACTGCCATTGATTTGCTAACATTTGCTACTTCTAATTTTGACATTTAGAGGGTCGCATGTGAAAGTATAAGAGAGAACTTTCCATTTATCAAACCGAGAGAGGCCAGATGATACACATTTGGTGGCGTACAAGTTTATATATTGACCTTCTAATTGTGCTTTACTTGATTACCCTAATACAATGTTGCTAAAAACATTTTCCTTTCCCTGTTTACCTTTTCAGATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAGGTAGTTATGTTCCTTTTTTTAGAATACTAGATTTTGTACCTTGCACATCACAGGTAGTACCAACAGGATTTATTTTTTGAAATTCAAGAAGTTCTATAATTCATCATTACTATTTCTTGTAATCTAAAGAAGGTGTGCACAACATAAGTAAACAATGGAATACTATAAGTGGTGGAGTGGCATCCGCTTAAATTCAGCACCAAAAAGAATTTATTTTTTTGGGTGAACTAATTTACCCCTAAAAAATCCTTATACCAATGGTGATGCTTTTTATTCTTTCAACCAGGACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGA</genome_strand>
        <mrna_strand>AAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACGGGCTACCCCCCCCACTGCTACCCTTTGATCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTACTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTATTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGCTGGGTTTGCAGTTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGAGTCTCTGCTGAAGAAAAAGAGTGTTCTCCTTGACGGG...................................................................................................GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTAATCGTATATAAGACCACCAATTATCAGTATCAACAGACAGAG..............................................................................................................................................................................................................................................ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG..............................................................................................................................................................................................................................................................................................GACTCTACTATGGATATGAGAAGCTAGCACAGCTTACCGCGTGGTATTATCCAAGCAAGATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400512" ref_strand="+" ref_description="SGN-E400512 [cSTC-14-O9]">
      <seq>tatacccctctaccccaactgctacccttgtccacttctttcaatatctatactgtatctgtatgcttacctatacatatacatagatttgtcccattttctgttctgttttgctgataaagacttgaacttgttcttcaaaggttcacttttttccacttttcaagattctggagctgttgggttgctcttttgctccaaacccttgttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44327" stop="45145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44627" g_stop="44845" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E400512" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44627" e_stop="44845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTC-AAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGT</genome_strand>
        <mrna_strand>TATACCCC-T-CTACCCCAACTGCTACCCTT-GTCCACTTCTTTCAATATCTATACTGTATCTGTATGCTTACCTATACATATACATAGATTTGTCCCATTTTCTGTTCTG-TTTTGCTGATAAAGACTTGAACTTGTTCTTCAAAGGTTCAC--TTTTTTCCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTCTTTTGCTCCAAACCCTTGTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419657" ref_strand="+" ref_description="SGN-E419657 [STM-30-A15]">
      <seq>ctgttttgctgataaagacttgaacttgttcttcaaaggttcactttttttccacttttcaagattctggagctgttgggttgctcttttgctccaaacccttgttgggttttcagttcttgagtgttcgatgagaactttctctgtttcatattcgcctgcaacaggcaattaaattatggcggtgtttctgctgaagaaaaggagtgttctccttgatgggggaacatgtggattaaagatgagacagctaccatttatgtggatcatctgtatagttatgttgtttattgtatataggaccaccaattatcagtatcaacagacagagatggagtcaaggttggatccattttattcttcaaaggactctagtatggatatgagaagcttgcacagtttaccgcgtggtattatccaagcaagatcagatctggagttaaagcctctttggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttgttggcagttccagttggcattaaacagaagagtaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="44435" stop="48238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44735" g_stop="44859" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46556" g_stop="46654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="223" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="331" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47100" g_stop="47135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="367" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47422" g_stop="47538" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="484" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="568" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47877" g_stop="47938" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="630" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E419657" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44735" e_stop="44859"/>
          <exon e_start="46556" e_stop="46654"/>
          <exon e_start="46754" e_stop="46861"/>
          <exon e_start="47100" e_stop="47135"/>
          <exon e_start="47422" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTC-AAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAGGTATGTTTTCAATCTTTCTTGGTTCTTGATTTTTGGTGCTGTTATGGAGGTTGTTGAGTAATGACAATTAAGCCCATGGTGGAGTTGGGTGTGATTGTTCTTGAAAAAAGATCAAGTCTTTAATTAATGGGGTGGCGTGAGTTGATCAGATTCATTAGCTTTTCGAAGTTTTATTAATGCTAGTGTTTGTGTAATTAATGGTTGGTTAAGTATGCATTGAATGGTTGTTTGTTGTAATCTTGAAAACTGATTACTTCAAGTAACGTCTTCTCTTCATTTAATTTTGTCCCCTGGTCTTTTGAATTCTCCTATTTTTTGGATCCTATTGAACAATGGTTTCCCTCATCAATAATTTTGAATTCGTTATAGGATTTGCAAAATTTGTAAAAAAAATGAGCAGATGTTAGGAATTTCGTCTGTTTGCTGTGAGCTTTTTTATTTGGAATTAAAAAACTCTGAATCACAATTTTCTTTTTGTAGGGAGGAGGATAGATTTTTGTTAATCACTACTGTTATTTTCCAGATTCATTTATCTAGTTTTACATGGTTCTTAGTTCAACGCAGATAAATATAGAACTATATGAATTGGTTAGATTAAAACATAGAATGTGGGTTGAACAATTTTTTTGGTAGTCTTGATGCCGTGTGAATTGCAAATGTTGTTCCGAGAAAAATTCTGGCATACATGAAAATCAAACAAGGTGACAACTGTTAGTGGAATTCGTCAACTTTGTCAAACGCTTGCGTGTCACTTAATTGTCATATTCTCTGTCTCTACATTCAAATTAGACATCTTATCATTGACAACACTGCCTTTTCCATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAGGTAAATTTTTCTGCCAATGCTTTTTCCGATGGAAAGAGGTCACTTAGCGTTTTTTATCTTTTCCACTCTCCCATAGTATTAGTCCATTTCATTCACCTAGCTACTAGTCCCAAAGTTTTCACACACTCCATTACCTCTTGGGCACATCCAGTCTACCAGTAGCAACCCTGAATTCAAAATGACCTGTCAGTTCTATAATCGTCTCCCAATGTTTCACACGCTTGATTACCTCCAGGGCACATCTAGTCAACCACTAGTGACCACAAATGCAAAATGACCTCTCATTTACAAGCAGATATTGTTGCCTGACTGTGTAGTTGTGTGGGTAACTCATAATTTTGTGATCTAATCAGATTATAGAATATTGGTCGCTAGATCCTTTTTGGGTTTTGTCCATAAATGGTGTCAAAAGAAATTGGTTACTGTATTCATGTGTGTTAATAACCTGTTAAATCGGCTGAGTGAGAGAGTTACTAGGCAATCTTATGTACATTTAAGTTTCATTCCATTTTGGTCAAACTGATAGCTAGCACAACATTCTTTTCCTTGTATGCGTTGTTTGCTAGATACGGAATTCCGTTGGAGATTTTATATTAGAAATAATGTTCATCAGTTAATGAATTGCAGAAAAGAGATAAATGTGTAACGGCTTTAAAATCTATTTTGCTAGATTCTTTGTTAAGACTAGTTGTTGATATGTGTATATTTGTTGCAGTGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGGGTATGTAAATGCTATCTGGTTAGGAATTACTAATGACCTGATTATCTAGCTAACAATCCATAGATTTATTAAACATTAACTTGTGAAATTGAATTGCAGGGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAGGTATGATTGCATTGTACTGCCATTGATTTGCTAACATTTGCTACTTCTAATTTTGACATTTAGAGGGTCGCATGTGAAAGTATAAGAGAGAACTTTCCATTTATCAAACCGAGAGAGGCCAGATGATACACATTTGGTGGCGTACAAGTTTATATATTGACCTTCTAATTGTGCTTTACTTGATTACCCTAATACAATGTTGCTAAAAACATTTTCCTTTCCCTGTTTACCTTTTCAGATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAGGTAGTTATGTTCCTTTTTTTAGAATACTAGATTTTGTACCTTGCACATCACAGGTAGTACCAACAGGATTTATTTTTTGAAATTCAAGAAGTTCTATAATTCATCATTACTATTTCTTGTAATCTAAAGAAGGTGTGCACAACATAAGTAAACAATGGAATACTATAAGTGGTGGAGTGGCATCCGCTTAAATTCAGCACCAAAAAGAATTTATTTTTTTGGGTGAACTAATTTACCCCTAAAAAATCCTTATACCAATGGTGATGCTTTTTATTCTTTCAACCAGGACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGA</genome_strand>
        <mrna_strand>CTGT-TTTGCTGATAAAGACTTGAACTTGTTCTTCAAAGGTTCAC-TTTTTTTCCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTCTTTTGCTCCAAACCCTTGTTGGGTTTTCAGTTCTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATGAGAACTTTCTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGATGGG...................................................................................................GGAACATGTGGATTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG..............................................................................................................................................................................................................................................ATGGAGTCAAGGTTGGATCCATTTTATTCTTCAAAG..............................................................................................................................................................................................................................................................................................GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTTTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTGTTGGCAGTTCCAGTTGGCATTAAACAGAAGAGTAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247265" ref_strand="+" ref_description="SGN-E247265 [cLEF-46-P4]">
      <seq>attttttcggtcggtttgttggtggggatggaaagaggcaaagaatgaggtgtcttggaatagcttactgaacttgcaactgctttccttttgttgataagggcgtggtctacaattaatttgctcacacctcagccataacacttgctatctttcactagtgttcgatgagaactttttctgtttcatattcgcctgcaacaggcaattaaattatggcggtgtttctgctgaagaaaaggagtgttctccttgacgggggaacatgtggagtaaagatgagacagctaccatttatgtggatcatctgtatagttatgttgtttattgtatataggaccaccaattatcagtatcaacagacagagatggagtcaaggttggatccgttttattcttcaaaggactctagtatggatatgagaagcttgcacagtttaccgcgtggtattatccaagcaagatcagatctggagttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="45380" stop="47799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45680" g_stop="45840" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45841" i_stop="46555" i_length="715">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46556" g_stop="46654" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46754" g_stop="46861" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="368" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47100" g_stop="47135" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="404" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47422" g_stop="47499" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="482" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E247265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45680" e_stop="45840"/>
          <exon e_start="46556" e_stop="46654"/>
          <exon e_start="46754" e_stop="46861"/>
          <exon e_start="47100" e_stop="47135"/>
          <exon e_start="47422" e_stop="47499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAGGTAAATTTTTCTGCCAATGCTTTTTCCGATGGAAAGAGGTCACTTAGCGTTTTTTATCTTTTCCACTCTCCCATAGTATTAGTCCATTTCATTCACCTAGCTACTAGTCCCAAAGTTTTCACACACTCCATTACCTCTTGGGCACATCCAGTCTACCAGTAGCAACCCTGAATTCAAAATGACCTGTCAGTTCTATAATCGTCTCCCAATGTTTCACACGCTTGATTACCTCCAGGGCACATCTAGTCAACCACTAGTGACCACAAATGCAAAATGACCTCTCATTTACAAGCAGATATTGTTGCCTGACTGTGTAGTTGTGTGGGTAACTCATAATTTTGTGATCTAATCAGATTATAGAATATTGGTCGCTAGATCCTTTTTGGGTTTTGTCCATAAATGGTGTCAAAAGAAATTGGTTACTGTATTCATGTGTGTTAATAACCTGTTAAATCGGCTGAGTGAGAGAGTTACTAGGCAATCTTATGTACATTTAAGTTTCATTCCATTTTGGTCAAACTGATAGCTAGCACAACATTCTTTTCCTTGTATGCGTTGTTTGCTAGATACGGAATTCCGTTGGAGATTTTATATTAGAAATAATGTTCATCAGTTAATGAATTGCAGAAAAGAGATAAATGTGTAACGGCTTTAAAATCTATTTTGCTAGATTCTTTGTTAAGACTAGTTGTTGATATGTGTATATTTGTTGCAGTGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGGGTATGTAAATGCTATCTGGTTAGGAATTACTAATGACCTGATTATCTAGCTAACAATCCATAGATTTATTAAACATTAACTTGTGAAATTGAATTGCAGGGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAGGTATGATTGCATTGTACTGCCATTGATTTGCTAACATTTGCTACTTCTAATTTTGACATTTAGAGGGTCGCATGTGAAAGTATAAGAGAGAACTTTCCATTTATCAAACCGAGAGAGGCCAGATGATACACATTTGGTGGCGTACAAGTTTATATATTGACCTTCTAATTGTGCTTTACTTGATTACCCTAATACAATGTTGCTAAAAACATTTTCCTTTCCCTGTTTACCTTTTCAGATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAGGTAGTTATGTTCCTTTTTTTAGAATACTAGATTTTGTACCTTGCACATCACAGGTAGTACCAACAGGATTTATTTTTTGAAATTCAAGAAGTTCTATAATTCATCATTACTATTTCTTGTAATCTAAAGAAGGTGTGCACAACATAAGTAAACAATGGAATACTATAAGTGGTGGAGTGGCATCCGCTTAAATTCAGCACCAAAAAGAATTTATTTTTTTGGGTGAACTAATTTACCCCTAAAAAATCCTTATACCAATGGTGATGCTTTTTATTCTTTCAACCAGGACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAG</genome_strand>
        <mrna_strand>ATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGGTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGG...................................................................................................GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG..............................................................................................................................................................................................................................................ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG..............................................................................................................................................................................................................................................................................................GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377612" ref_strand="+" ref_description="SGN-E377612 [TUS-20-C18]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaataagaagcagaacaaataggttccacagaagggtctacgatattagaggtagtacgaagtgttcagacgaaagcgaaggtcccccatgcaccggatttgtggagggaatggctccggtcttttccagatctgcatggctttgtgcctggcatcttatacagaatgatcttgttcatggatggggaatggacatgaaacttggttattgtgcacagggagatcgatccaaaaaggtgggagtagttgatagtgaatatgtagtgcaccagagcatccaaactttgggcggacaatcactgaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="51219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="472" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49503" g_stop="49568" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="538" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49821" g_stop="49887" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="605" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50591" g_stop="50644" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="659" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50829" g_stop="50918" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="749" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E377612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49568"/>
          <exon e_start="49821" e_stop="49887"/>
          <exon e_start="50591" e_stop="50644"/>
          <exon e_start="50829" e_stop="50918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAAAAAGATTTTGAGAATATTTAACTTCTCGAGTGTCTTGAGGTAGATGCTAGTTCTTCCGGATTTTCTTTATCATGCATTAGAAGAATGGTTGATTCACTCTCCTTTACAGATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAGGTAGAACTTTGTTTCTCTCTTTGCTGAGATAGGACATTTTCAAGCCTTTATTAAGAACTCTATGCATACACTTAAATCAGGAATATAAATGTAAGTGAATGTTACCTTTCTCAAAAAAAAAAAAAAAAGAGAATATAAATGTAACTTTACCAATGCTCAAAAAAAAAAAGAATATAATTGTAAGTTTTGAGGAGGATGTTGGATTTGGATATTTTGATTTTCGATTTGAAAGAGGCTGGCAAAAGTATCCTAGAAGTGTGTTTTGATTGAGTGCTAGTGTTTTTGTCACTTTGTTTAGTTGATCATCCCAATGAGTGGTTCATTTTGAAGAATTCTGGCAGCTTAAAATTAAGAATTCTACTGTGTGCGCCTGTGCTCTAAGTTACATTCTTCTTGGTGGAGTGGGGAGCAGTGTTCTCTTAGAGATGATGACTATGTCTGGTTTGTGTCAGAACTTAAACAGTACCATATAAATTGTTGCATTTGCTCATCTTCTAATCATGTTTGTTTTCATTTTGGATTGAAATGCTCGTATACTGTTAATGTGCTCTAAGTTTCAGCGATGTTCTTGAATTAATTTTCCACATGCACTTTTGACATGCCGTGTGGACGCACTATCCACTTTCATTTTCCACTCTTGTACTGATTCATCATCCTGTTTACATGAGCTGCTAATGGTTGCTCTTTGCCTCTTTCCTGTCAGAATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAGGTGAACTTTCTTTTCAACTTGTTAATTTACAAGATGAACCTCTCATCCCTTCCTGTGTATGTTTTTATGCCCTCTGTCTACGGAGTGTAATCTAAATTGTAAATTGCTATACATTTCTCTTTACTCTTTAAAACATTATGTTCTGATACAGCCCTAAACCTACGTGAATTTTATATTATCATAGGGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG............................................................................................................................................................................................................................................................ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG........................................................................................................................................................................................GGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375105" ref_strand="+" ref_description="SGN-E375105 [TUS-36-K13]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaataagaagcagaacaaataggttccacagaagggtctacgatattagaggtagtacgaagtgttcagacgaaagcgaaggtcccccatgcaccggatttgtggagggaatggctccggtcttttccagatctgcatggctttgtgcctggcatcttatacagaatgatcttgttcatggatggggaatggacatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="50928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="472" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49503" g_stop="49568" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="538" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49821" g_stop="49887" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="605" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50591" g_stop="50628" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="643" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E375105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49568"/>
          <exon e_start="49821" e_stop="49887"/>
          <exon e_start="50591" e_stop="50628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAAAAAGATTTTGAGAATATTTAACTTCTCGAGTGTCTTGAGGTAGATGCTAGTTCTTCCGGATTTTCTTTATCATGCATTAGAAGAATGGTTGATTCACTCTCCTTTACAGATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAGGTAGAACTTTGTTTCTCTCTTTGCTGAGATAGGACATTTTCAAGCCTTTATTAAGAACTCTATGCATACACTTAAATCAGGAATATAAATGTAAGTGAATGTTACCTTTCTCAAAAAAAAAAAAAAAAGAGAATATAAATGTAACTTTACCAATGCTCAAAAAAAAAAAGAATATAATTGTAAGTTTTGAGGAGGATGTTGGATTTGGATATTTTGATTTTCGATTTGAAAGAGGCTGGCAAAAGTATCCTAGAAGTGTGTTTTGATTGAGTGCTAGTGTTTTTGTCACTTTGTTTAGTTGATCATCCCAATGAGTGGTTCATTTTGAAGAATTCTGGCAGCTTAAAATTAAGAATTCTACTGTGTGCGCCTGTGCTCTAAGTTACATTCTTCTTGGTGGAGTGGGGAGCAGTGTTCTCTTAGAGATGATGACTATGTCTGGTTTGTGTCAGAACTTAAACAGTACCATATAAATTGTTGCATTTGCTCATCTTCTAATCATGTTTGTTTTCATTTTGGATTGAAATGCTCGTATACTGTTAATGTGCTCTAAGTTTCAGCGATGTTCTTGAATTAATTTTCCACATGCACTTTTGACATGCCGTGTGGACGCACTATCCACTTTCATTTTCCACTCTTGTACTGATTCATCATCCTGTTTACATGAGCTGCTAATGGTTGCTCTTTGCCTCTTTCCTGTCAGAATGATCTTGTTCATGGATGGGGAATGGACATGAAACT</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG............................................................................................................................................................................................................................................................ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCTTGTTCATGGATGGGGAATGGACATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233268" ref_strand="+" ref_description="SGN-E233268 [cLED-6-H15]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaataagaagcagaacaaataggttccacagaagggtctacgatattagaggtagtacgaagtgttcagacgaaagcgaaggtcccccatgcaccggatttgtggagggaatggctccggtcttttccagatctgcatggctttgtgcctggcatcttatacagaatgatcttgttcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="50908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="472" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49503" g_stop="49568" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="538" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49821" g_stop="49887" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="605" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50591" g_stop="50608" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="623" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E233268" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49568"/>
          <exon e_start="49821" e_stop="49887"/>
          <exon e_start="50591" e_stop="50608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAAAAAGATTTTGAGAATATTTAACTTCTCGAGTGTCTTGAGGTAGATGCTAGTTCTTCCGGATTTTCTTTATCATGCATTAGAAGAATGGTTGATTCACTCTCCTTTACAGATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAGGTAGAACTTTGTTTCTCTCTTTGCTGAGATAGGACATTTTCAAGCCTTTATTAAGAACTCTATGCATACACTTAAATCAGGAATATAAATGTAAGTGAATGTTACCTTTCTCAAAAAAAAAAAAAAAAGAGAATATAAATGTAACTTTACCAATGCTCAAAAAAAAAAAGAATATAATTGTAAGTTTTGAGGAGGATGTTGGATTTGGATATTTTGATTTTCGATTTGAAAGAGGCTGGCAAAAGTATCCTAGAAGTGTGTTTTGATTGAGTGCTAGTGTTTTTGTCACTTTGTTTAGTTGATCATCCCAATGAGTGGTTCATTTTGAAGAATTCTGGCAGCTTAAAATTAAGAATTCTACTGTGTGCGCCTGTGCTCTAAGTTACATTCTTCTTGGTGGAGTGGGGAGCAGTGTTCTCTTAGAGATGATGACTATGTCTGGTTTGTGTCAGAACTTAAACAGTACCATATAAATTGTTGCATTTGCTCATCTTCTAATCATGTTTGTTTTCATTTTGGATTGAAATGCTCGTATACTGTTAATGTGCTCTAAGTTTCAGCGATGTTCTTGAATTAATTTTCCACATGCACTTTTGACATGCCGTGTGGACGCACTATCCACTTTCATTTTCCACTCTTGTACTGATTCATCATCCTGTTTACATGAGCTGCTAATGGTTGCTCTTTGCCTCTTTCCTGTCAGAATGATCTTGTTCATGGA</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG............................................................................................................................................................................................................................................................ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCTTGTTCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241133" ref_strand="+" ref_description="SGN-E241133 [cLED-26-H5]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaataagaagcagaacaaataggttccacagaaaggtctacgatattagaggtagtacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="49831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="472" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49503" g_stop="49531" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="501" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E241133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGA</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAAGGTCTACGATATTAGAGGTAGTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237750" ref_strand="+" ref_description="SGN-E237750 [cLED-19-L8]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="49630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49330" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="389" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E237750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAA</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239409" ref_strand="+" ref_description="SGN-E239409 [cLED-23-E5]">
      <seq>tggagttaaagcctctgtggtcaacaactagttcaaagtcaaaggcaaaggctagcaattctagctctcataatttattggcagttccagttggcatcaaacagaagagcaatgttgatgctctcgtccaaaagtttctttcagcaaattttactgtcattctattccactatgatggtaatgttgatgggtgggaagacctccaatggagtaaagatgccattcacattgttgctcacaatcagacaaaatggtggtttgcgaagagatttttacatcctgcagttgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="47189" stop="49628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47489" g_stop="47538" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47690" g_stop="47773" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="134" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.732" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47877" g_stop="47995" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="253" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48622" g_stop="48723" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49297" g_stop="49328" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="387" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E239409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47489" e_stop="47538"/>
          <exon e_start="47690" e_stop="47773"/>
          <exon e_start="47877" e_stop="47995"/>
          <exon e_start="48622" e_stop="48723"/>
          <exon e_start="49297" e_stop="49328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAGGTCTTACTCTCTATACTCCTGAACTTTGAAAAAATAGAGCAACCTCCTTAGGATACTGATATCTTATTTATTACCACACTTTTTCCCTCTCTGTGCTGTCTGTCACTCTGTCATGCATTTAATTTGTGGCAATGTTGTGTCTCCATTTCAGGCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAGGTATAACATCTAATTTATGCTTGTTATGGAGAGCACTTATGTTGTGGTACTTTCTGATTTTACTATCTTATATATACCTGTGACCTTATCTTGTGATGTTCAGTTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATGGTAAGATACACACTCCATAGGGGATTAAATTGACACGGGCAGATTTATTCACATTAGAGGGAACACCTTAGCCACCTGGACTAGCAATATTTTCTGTGATTTAGAAGTGCTGTTCAACTGATCTGCAGTGTGATTTTAGTGAAAACCGAGTAATCCTTAGGCCACAAGTTGCTTGAGATTAATCTGTGCTTCTCATTAATTCTGAAAGTTTATATCTACTGATCCAACACAGAGTTGCTGGAAATTAGTCTGTTTCATAATAACCATCCAGGATACCCTGCAATCCTTCGCTGAACAAATGATGACATCTTGTTCTTCATGAATCTAGACTTAATATACTCCTAATATACCCTAAGTTGGTCTCATCTTTTGGCTGGATGGAATTGTTACCCTGCAACCTTTGCTGAACAAATGATGCTATCTTGTTCTTCATGACTTTTTGACTGAATGAACTCCTAATATATCCTAAGTTGGTCTCATCTTTTGGCTGTATGCAAAGTGTTATTTAATTTCTTTAGGGTTCTAGTATTCTTCTTATGCAAAGTTTTCATCATTGTGGATGCATCTAGCTTGTATGGTTTATGCTAAATGATATCTCACCATTGTTGTGAATTTATCTGATGCAGGTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGG</genome_strand>
        <mrna_strand>TGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG.......................................................................................................................................................GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG.......................................................................................................TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361461" ref_strand="+" ref_description="SGN-E361461 [cLPP-6-L20]">
      <seq>gtttgcgaagagatttttacatcctgcaggtgtttcaatttatgattacattttcctttgggatgaagatttgggtgtggagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggattggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaatacgaagcagaacaaataggttccacagaagggtctacgatattagaggtagtacgaagtgttcagacgaaagcgaaggtcccccatgcaccgggtaagtgtaacacaattactggatcagactgttatgagactttgggcattggttggtcaggataagcttttgcatcaattccggatgttcaaattgaccctgttatatactctcttcctacaattttgttctacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="48325" stop="50011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48625" g_stop="48723" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="216" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49503" g_stop="49711" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="425" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E361461" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48625" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAA</genome_strand>
        <mrna_strand>GTTTGCGAAGAGATTTTTACATCCTGCAGGTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGATTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATACGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATCAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGCTTTTGCATCAATTCCGGATGTTCAAATTGACCCTGTTATATACTCTCTTCCTACAATTTTGTTCTACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242424" ref_strand="+" ref_description="SGN-E242424 [cLED-30-D19]">
      <seq>gagaatttccatcctggaaggtaccttgaaatagtaaaatctgaaggactggaaatttctcagccagctttagacccgaattcaactggtatccatcatagaatcacaataagaagcagaacaaataggttccacagaagggtctacgatattagaggtagtacgaagtgttcagacgaaagcgaaggtcccccatgcaccggatttgtggagggaatggctccggtcttttccagatctgcatggctttgtgcctggcatcttatacagaatgatcttgttcatggatggggaatggacatgaaacttggttattgtgcacagggagatcgatccaaaaaggtgggagtagttgatagtgaatatgtagtgcaccagagcatccaaactttgggcggacaatcactgaaaaaggattcaaattctgaagagtctgtgaagaggcacgttgttgatgtgcgatctgagattcggagacaatcaacttatgagctgcaaatattcaaggatcgatgggaacgagctgtgaagcaggacaagaactgggcagatccgtttaaagctagccagagacgtagacagctgtataaacaaaggcgaaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="48404" stop="51840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48704" g_stop="48723" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49297" g_stop="49413" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="137" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49503" g_stop="49568" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="203" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49821" g_stop="49887" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="270" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50591" g_stop="50644" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="324" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50829" g_stop="50918" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="414" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50919" i_stop="51096" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51097" g_stop="51123" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="441" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51124" i_stop="51243" i_length="120">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51244" g_stop="51270" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="468" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51271" i_stop="51401" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51402" g_stop="51540" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="607" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E242424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48704" e_stop="48723"/>
          <exon e_start="49297" e_stop="49413"/>
          <exon e_start="49503" e_stop="49568"/>
          <exon e_start="49821" e_stop="49887"/>
          <exon e_start="50591" e_stop="50644"/>
          <exon e_start="50829" e_stop="50918"/>
          <exon e_start="51097" e_stop="51123"/>
          <exon e_start="51244" e_stop="51270"/>
          <exon e_start="51402" e_stop="51540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTTCCATCCTGGAAGGTAAGATGATTGCACGAGGTTGAAGTTGGCTTTCTGTTTATCTTACATTTTTAATCCACCAATAGATACATTAGATACAATTCGTTCACTCCTGGTGAGTATTGTGAATATATTTTCTATTAACTCTTTTTGTGGAAATAAAACAGATCTAATCATTTGATATCTCCTGGTGGATTATTGTGAACAATGATCCTATAGATTCCTTTCTTAGAAATAGGCAGATGTTATCATTTTAAATATAAATTAGTATGAGTTTGTTTCTATGATCCTGGATATTTTTCCTCTCCTATTATTTCTCAAGCATTTGGTGTCAAAAGTCATGACATGTTTATTTGGGCATTCCGAGCTTTTGAGGAGATAAACAGTAGTTGCTTCATTTAGTATCCACAGTTTATTGTATTTACATTGTCATGTCAATGGATGATTTCTATTGCGTACTCTGTTAATCAGGCTTCCTTTTTTATGGGGCTTCTTGCTCTAGAAGGATGGTTGTTAGTTATCATGAAAGCAACAAGTCTTACATGCCTCTTTGCTAATTATAATTTTCTTTCAATTGCATCTTTTGTTATTTAGGTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAGGTAAGTCCGCCAGGCTATCCAACCACCCAAATTCAACCTTTTATTGCACCTCCTTTGGATGAATACTGATGCACAATTCCTTTTTGCAGAAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAAAAAGATTTTGAGAATATTTAACTTCTCGAGTGTCTTGAGGTAGATGCTAGTTCTTCCGGATTTTCTTTATCATGCATTAGAAGAATGGTTGATTCACTCTCCTTTACAGATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAGGTAGAACTTTGTTTCTCTCTTTGCTGAGATAGGACATTTTCAAGCCTTTATTAAGAACTCTATGCATACACTTAAATCAGGAATATAAATGTAAGTGAATGTTACCTTTCTCAAAAAAAAAAAAAAAAGAGAATATAAATGTAACTTTACCAATGCTCAAAAAAAAAAAGAATATAATTGTAAGTTTTGAGGAGGATGTTGGATTTGGATATTTTGATTTTCGATTTGAAAGAGGCTGGCAAAAGTATCCTAGAAGTGTGTTTTGATTGAGTGCTAGTGTTTTTGTCACTTTGTTTAGTTGATCATCCCAATGAGTGGTTCATTTTGAAGAATTCTGGCAGCTTAAAATTAAGAATTCTACTGTGTGCGCCTGTGCTCTAAGTTACATTCTTCTTGGTGGAGTGGGGAGCAGTGTTCTCTTAGAGATGATGACTATGTCTGGTTTGTGTCAGAACTTAAACAGTACCATATAAATTGTTGCATTTGCTCATCTTCTAATCATGTTTGTTTTCATTTTGGATTGAAATGCTCGTATACTGTTAATGTGCTCTAAGTTTCAGCGATGTTCTTGAATTAATTTTCCACATGCACTTTTGACATGCCGTGTGGACGCACTATCCACTTTCATTTTCCACTCTTGTACTGATTCATCATCCTGTTTACATGAGCTGCTAATGGTTGCTCTTTGCCTCTTTCCTGTCAGAATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAGGTGAACTTTCTTTTCAACTTGTTAATTTACAAGATGAACCTCTCATCCCTTCCTGTGTATGTTTTTATGCCCTCTGTCTACGGAGTGTAATCTAAATTGTAAATTGCTATACATTTCTCTTTACTCTTTAAAACATTATGTTCTGATACAGCCCTAAACCTACGTGAATTTTATATTATCATAGGGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAGGTAACTCTCTATGTCACTTATCAAAGACTTCTGATTTGTTTATGCAACTATCCTCATTAATCATCCCGAATATGTTAGATAAGGTGTTCTTTAAGTCTACATATAGAGGCTATATTATAATAATTGTTGTGTTTGCTTCTTTATACCTCCATTCACCATGCTTTTTTTCTATGTGCAGGATTCAAATTCTGAAGAGTCTGTGAAGGTATACATCCAATTCTACTTTGTACTTTGAGAGTTTAATTTTCCCAACATCTAACTTCTTCTGCTGATGTTTTAACTGATTCTTGTCCTTGATTTTCATTTTCTTTTCCTTAACCTACAGAGGCACGTTGTTGATGTGCGATCTGAGGTGAGTGTCTGCTTATACGACAACCTATTTATTTCATATAACTTTCTTTTTTCATGGCATTGTTCATGTTGTGTGCATTACTATTGTCTATCTGCCCCTTGTTTTCATAAAACTGCCTTCCCATTTTGCAGATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAA</genome_strand>
        <mrna_strand>GAGAATTTCCATCCTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG.........................................................................................AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG............................................................................................................................................................................................................................................................ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG........................................................................................................................................................................................GGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG..................................................................................................................................................................................GATTCAAATTCTGAAGAGTCTGTGAAG........................................................................................................................AGGCACGTTGTTGATGTGCGATCTGAG...................................................................................................................................ATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377611" ref_strand="+" ref_description="SGN-E377611 [TUS-20-C18](-)">
      <seq>gttcagacgaaagcgaaggtcccccatgcaccggatttgtggagggaatggctccggtcttttccagatctgcatggctttgtgcctggcatcttatacagaatgatcttgttcatggatggggaatggacatgaaacttggttattgtgcacagggagatcgatccaaaaaaggtgggagtagttgatagtgaatatgtagtgcaccagagcatccaaactttgggcggacaatcactgaaaaaggattcaaattctgaagagtctgtgaagaggcacgttgttgatgtgcgatctgagattcggagacaatcaacttatgagctgcaaatattcaaggatcgatgggaacgagctgtgaagcaggacaagaactgggcagatccgtttaaagctagccagagacgtagacagctgtataaacaaaggcgaaaatcaaaggtgaagaagctgagataagcaatgggatagataaaacaaaaggttcataggttgagccttgtaatttgttctttctttttaggccccatgaatctcatcattagttcattacatatataggtttagtttctcctaatttttcttctttttaactttattttttttcacttctcatttatgtacatcaatttttttttttgtaactagccttcggttaccacactgtttcttttgattttaagttccagtttcttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="49235" stop="52103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49535" g_stop="49568" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49821" g_stop="49887" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="101" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.689" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50591" g_stop="50644" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="155" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50829" g_stop="50918" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="246" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50919" i_stop="51096" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51097" g_stop="51123" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="273" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51124" i_stop="51243" i_length="120">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51244" g_stop="51270" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="300" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51271" i_stop="51401" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51402" g_stop="51805" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="704" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E377611" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49535" e_stop="49568"/>
          <exon e_start="49821" e_stop="49887"/>
          <exon e_start="50591" e_stop="50644"/>
          <exon e_start="50829" e_stop="50918"/>
          <exon e_start="51097" e_stop="51123"/>
          <exon e_start="51244" e_stop="51270"/>
          <exon e_start="51402" e_stop="51805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAAAAAGATTTTGAGAATATTTAACTTCTCGAGTGTCTTGAGGTAGATGCTAGTTCTTCCGGATTTTCTTTATCATGCATTAGAAGAATGGTTGATTCACTCTCCTTTACAGATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAGGTAGAACTTTGTTTCTCTCTTTGCTGAGATAGGACATTTTCAAGCCTTTATTAAGAACTCTATGCATACACTTAAATCAGGAATATAAATGTAAGTGAATGTTACCTTTCTCAAAAAAAAAAAAAAAAGAGAATATAAATGTAACTTTACCAATGCTCAAAAAAAAAAAGAATATAATTGTAAGTTTTGAGGAGGATGTTGGATTTGGATATTTTGATTTTCGATTTGAAAGAGGCTGGCAAAAGTATCCTAGAAGTGTGTTTTGATTGAGTGCTAGTGTTTTTGTCACTTTGTTTAGTTGATCATCCCAATGAGTGGTTCATTTTGAAGAATTCTGGCAGCTTAAAATTAAGAATTCTACTGTGTGCGCCTGTGCTCTAAGTTACATTCTTCTTGGTGGAGTGGGGAGCAGTGTTCTCTTAGAGATGATGACTATGTCTGGTTTGTGTCAGAACTTAAACAGTACCATATAAATTGTTGCATTTGCTCATCTTCTAATCATGTTTGTTTTCATTTTGGATTGAAATGCTCGTATACTGTTAATGTGCTCTAAGTTTCAGCGATGTTCTTGAATTAATTTTCCACATGCACTTTTGACATGCCGTGTGGACGCACTATCCACTTTCATTTTCCACTCTTGTACTGATTCATCATCCTGTTTACATGAGCTGCTAATGGTTGCTCTTTGCCTCTTTCCTGTCAGAATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAGGTGAACTTTCTTTTCAACTTGTTAATTTACAAGATGAACCTCTCATCCCTTCCTGTGTATGTTTTTATGCCCTCTGTCTACGGAGTGTAATCTAAATTGTAAATTGCTATACATTTCTCTTTACTCTTTAAAACATTATGTTCTGATACAGCCCTAAACCTACGTGAATTTTATATTATCATAGGGAGATCGATCC-AAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAGGTAACTCTCTATGTCACTTATCAAAGACTTCTGATTTGTTTATGCAACTATCCTCATTAATCATCCCGAATATGTTAGATAAGGTGTTCTTTAAGTCTACATATAGAGGCTATATTATAATAATTGTTGTGTTTGCTTCTTTATACCTCCATTCACCATGCTTTTTTTCTATGTGCAGGATTCAAATTCTGAAGAGTCTGTGAAGGTATACATCCAATTCTACTTTGTACTTTGAGAGTTTAATTTTCCCAACATCTAACTTCTTCTGCTGATGTTTTAACTGATTCTTGTCCTTGATTTTCATTTTCTTTTCCTTAACCTACAGAGGCACGTTGTTGATGTGCGATCTGAGGTGAGTGTCTGCTTATACGACAACCTATTTATTTCATATAACTTTCTTTTTTCATGGCATTGTTCATGTTGTGTGCATTACTATTGTCTATCTGCCCCTTGTTTTCATAAAACTGCCTTCCCATTTTGCAGATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAATACATT</genome_strand>
        <mrna_strand>GTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG............................................................................................................................................................................................................................................................ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG........................................................................................................................................................................................GGAGATCGATCCAAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG..................................................................................................................................................................................GATTCAAATTCTGAAGAGTCTGTGAAG........................................................................................................................AGGCACGTTGTTGATGTGCGATCTGAG...................................................................................................................................ATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375104" ref_strand="+" ref_description="SGN-E375104 [TUS-36-K13](-)">
      <seq>cctggcatcttatacagaatgatcttggtcatggatggggaatggacatgaaacttggttattgtgcacagggagatcgatccaaaaaaggtgggagtagttgatagtgaatatgtagtgcaccagagcatccaaactttgggcggacaatcactgaaaaaggattcaaattctgaagagtctgtgaagaggcacgttgttgatgtgcgatctgagattcggagacaatcaacttatgagctgcaaatattcaaggatcgatgggaacgagctgtgaagcaggacaagaactgggcagatccgtttaaagctagccagagacgtagacagctgtataaacaaaggcgaaaatcaaaggtgaagaagctgagataagcaatgggatagataaaacaaaaggttcataggttgagccttgtaatttgttctttctttttaggccccatgaatctcatcattagttcattacatatataggtttagtttctcctaatttttcttctttttaactttattttttttcacttctcatttatgtacatcaatttttttttttgtaactagccttcggttaccacactgtttcttttgattttaagttccagtttcttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="50282" stop="52103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50591" g_stop="50644" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="71" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50829" g_stop="50918" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="162" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50919" i_stop="51096" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51097" g_stop="51123" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="189" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51124" i_stop="51243" i_length="120">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51244" g_stop="51270" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="216" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51271" i_stop="51401" i_length="131">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51402" g_stop="51805" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="620" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E375104" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50591" e_stop="50644"/>
          <exon e_start="50829" e_stop="50918"/>
          <exon e_start="51097" e_stop="51123"/>
          <exon e_start="51244" e_stop="51270"/>
          <exon e_start="51402" e_stop="51805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAGGTGAACTTTCTTTTCAACTTGTTAATTTACAAGATGAACCTCTCATCCCTTCCTGTGTATGTTTTTATGCCCTCTGTCTACGGAGTGTAATCTAAATTGTAAATTGCTATACATTTCTCTTTACTCTTTAAAACATTATGTTCTGATACAGCCCTAAACCTACGTGAATTTTATATTATCATAGGGAGATCGATCCAAAA-AGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAGGTAACTCTCTATGTCACTTATCAAAGACTTCTGATTTGTTTATGCAACTATCCTCATTAATCATCCCGAATATGTTAGATAAGGTGTTCTTTAAGTCTACATATAGAGGCTATATTATAATAATTGTTGTGTTTGCTTCTTTATACCTCCATTCACCATGCTTTTTTTCTATGTGCAGGATTCAAATTCTGAAGAGTCTGTGAAGGTATACATCCAATTCTACTTTGTACTTTGAGAGTTTAATTTTCCCAACATCTAACTTCTTCTGCTGATGTTTTAACTGATTCTTGTCCTTGATTTTCATTTTCTTTTCCTTAACCTACAGAGGCACGTTGTTGATGTGCGATCTGAGGTGAGTGTCTGCTTATACGACAACCTATTTATTTCATATAACTTTCTTTTTTCATGGCATTGTTCATGTTGTGTGCATTACTATTGTCTATCTGCCCCTTGTTTTCATAAAACTGCCTTCCCATTTTGCAGATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAATACATT</genome_strand>
        <mrna_strand>AATGATCTTGGTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG........................................................................................................................................................................................GGAGATCGATCCAAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG..................................................................................................................................................................................GATTCAAATTCTGAAGAGTCTGTGAAG........................................................................................................................AGGCACGTTGTTGATGTGCGATCTGAG...................................................................................................................................ATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447017" ref_strand="+" ref_description="SGN-E447017 [cSTA-24-I3]">
      <seq>cgaggcttctctctcactctctctctctctctctctctcatcgctgcgtggagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactgcaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtctgggaggttggcattgactgttggaagagatgaatgtatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52475" stop="53626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52759" g_stop="53326" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E447017" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52759" e_stop="53326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGGTTTAACATAAACCCCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTT</genome_strand>
        <mrna_strand>CGAGGCTTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCATCGCTGCGTGGAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTGCACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCTGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472031" ref_strand="+" ref_description="SGN-E472031 [cSTB-27-A2]">
      <seq>ccttctctctctctctctctctctctctcatcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcactgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52477" stop="53466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52769" g_stop="53168" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E472031" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52769" e_stop="53168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAACCCCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGA</genome_strand>
        <mrna_strand>CCTTCTCTCTCTCTCTCTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACTGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472036" ref_strand="+" ref_description="SGN-E472036 [cSTB-27-A14]">
      <seq>ccttctctctctctctctctctctctctcatcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcactgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52477" stop="53406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52769" g_stop="53106" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E472036" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52769" e_stop="53106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAACCCCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTAT</genome_strand>
        <mrna_strand>CCTTCTCTCTCTCTCTCTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACTGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537864" ref_strand="+" ref_description="SGN-E537864 [TUS-56-L1](-)">
      <seq>ctccttcctctaaccaaattaaccatagccatacattcatctcttccaacagtcaatgccaacctccccgacggatgaatgcatatagaattcactgccttacgatgcactttaaccgtcttgagatgaacaaaaggatcagcatcatatatggaaaccgaaccatcttcagacgcggcaataaggttacgagggaaggagaatgaagaaggggtaaaaaaggaaagtgaagtaacggtggcggagtggtgtagtgacccaatttctgagcaagtagaaaggtcatagattttgatagtgtcatcggcgccgccggatacagcggcagaaccggcgacggcggtgcatttaattggtgagagatgtgaagggaaggagaatagaggggttagttcgtaattctgatcgtttttgagggatctcaacttgaatccccaaatgaatctctcgtatgaacctgcaattaaactcatagctttacgcagcgatgagagagagagaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53586" stop="52480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53286" g_stop="52777" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E537864" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53286" e_stop="52777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTCCTCTAACCAAATTAACCATAGCCATACATTCATCTCTTCCAACAGTCAATGCCAACCTCCCCGACGGATGAATGCATATAGAATTCACTGCCTTACGATGCACTTTAACCGTCTTGAGATGAACAAAAGGATCAGCATCATATATGGAAACCGAACCATCTTCAGACGCGGCAATAAGGTTACGAGGGAAGGAGAATGAAGAAGGGGTAAAAAAGGAAAGTGAAGTAACGGTGGCGGAGTGGTGTAGTGACCCAATTTCTGAGCAAGTAGAAAGGTCATAGATTTTGATAGTGTCATCGGCGCCGCCGGATACAGCGGCAGAACCGGCGACGGCGGTGCATTTAATTGGTGAGAGATGTGAAGGGAAGGAGAATAGAGGGGTTAGTTCGTAATTCTGATCGTTTTTGAGGGATCTCAACTTGAATCCCCAAATGAATCTCTCGTATGAACCTGCAATTAAACTCATAGCTTTACGCAGCGATGAGAGAGAGAGAAAAAAAGGG</genome_strand>
        <mrna_strand>CTCCTTCCTCTAACCAAATTAACCATAGCCATACATTCATCTCTTCCAACAGTCAATGCCAACCTCCCCGACGGATGAATGCATATAGAATTCACTGCCTTACGATGCACTTTAACCGTCTTGAGATGAACAAAAGGATCAGCATCATATATGGAAACCGAACCATCTTCAGACGCGGCAATAAGGTTACGAGGGAAGGAGAATGAAGAAGGGGTAAAAAAGGAAAGTGAAGTAACGGTGGCGGAGTGGTGTAGTGACCCAATTTCTGAGCAAGTAGAAAGGTCATAGATTTTGATAGTGTCATCGGCGCCGCCGGATACAGCGGCAGAACCGGCGACGGCGGTGCATTTAATTGGTGAGAGATGTGAAGGGAAGGAGAATAGAGGGGTTAGTTCGTAATTCTGATCGTTTTTGAGGGATCTCAACTTGAATCCCCAAATGAATCTCTCGTATGAACCTGCAATTAAACTCATAGCTTTACGCAGCGATGAGAGAGAGAGAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593192" ref_strand="+" ref_description="SGN-E593192 [36416]">
      <seq>cttctctctctctctctctcttcgctgcgtaaagctataagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgacaagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgcttttgttgcactttctgggatgcatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52479" stop="53750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52778" g_stop="53458" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E593192" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52778" e_stop="53458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGC-TTTGTGCCAC-TTATGGGATG</genome_strand>
        <mrna_strand>CTTCTCTCTCTCTCTCTCTCTTCGCTGCGTAAAGCTATAAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGACAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTTGTTGCACTTTCTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598386" ref_strand="+" ref_description="SGN-E598386 [74057]">
      <seq>cttctctctctctctctctcttcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52479" stop="53538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52778" g_stop="53238" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E598386" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52778" e_stop="53238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGT</genome_strand>
        <mrna_strand>CTTCTCTCTCTCTCTCTCTCTTCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440030" ref_strand="+" ref_description="SGN-E440030 [cSTA-14-B8]">
      <seq>ctctctctctctcttcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctggcaccgttacttcactttccttttttaccccttcttcattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52486" stop="53387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52785" g_stop="53088" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E440030" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52785" e_stop="53088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTC</genome_strand>
        <mrna_strand>CTCTCTCTCTCTCTTCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGGCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417844" ref_strand="+" ref_description="SGN-E417844 [STM-26-A14]">
      <seq>cttctctctcactctctctctctctctctctctcatcgctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactgcaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtctgggaggttggcattgactgttggaagagatgaatgtatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattntagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaaagaggtgctttgtgccacttctgggatgcatggtattttgtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52475" stop="53758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52786" g_stop="53458" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="695" r_length="673" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E417844" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52786" e_stop="53458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG</genome_strand>
        <mrna_strand>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTGCACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCTGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTNTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAAGAGGTGCTTTGTGCCACTTCTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447022" ref_strand="+" ref_description="SGN-E447022 [cSTA-24-K3]">
      <seq>cttctctctcacttctctctctctctctctctctcatcgctgcgtggagctatgagtttaattgccggttcatactcagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactgcaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtctgggaggttggcattgactgttggaagagatgaatgtatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52477" stop="53561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52786" g_stop="53261" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="500" r_length="477" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E447022" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52786" e_stop="53261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATAC-GAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTA</genome_strand>
        <mrna_strand>TCTCTCTCTCTCATCGCTGCGTGGAGCTATGAGTTTAATTGCCGGTTCATACTCAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTGCACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCTGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595987" ref_strand="+" ref_description="SGN-E595987 [39271]">
      <seq>gctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgctgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcgctttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttcggtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52501" stop="55053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52801" g_stop="53458" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54753" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="720" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E595987" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52801" e_stop="53458"/>
          <exon e_start="54692" e_stop="54753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGG</genome_strand>
        <mrna_strand>GCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCTGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCGCTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593173" ref_strand="+" ref_description="SGN-E593173 [36397]">
      <seq>gctgcgtaaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgctgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcgctttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttcggtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagtttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtatttgtttactggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52501" stop="53758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52801" g_stop="53458" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E593173" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52801" e_stop="53458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG</genome_strand>
        <mrna_strand>GCTGCGTAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCTGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCGCTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAG-TTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409293" ref_strand="+" ref_description="SGN-E409293 [PPI-13-N7]">
      <seq>taaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgctgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcgctttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttcggtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatgggttatttggttaggggaaggcgaagtttttattgcaggttggggaaagaaagctctttagttaattttagtgatggtggtgaaaagtttttatggttatggatgatnagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtgggaaaattgcatatagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52507" stop="55072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52807" g_stop="53458" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54772" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="732" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E409293" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52807" e_stop="53458"/>
          <exon e_start="54692" e_stop="54772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATT</genome_strand>
        <mrna_strand>TAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCTGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCGCTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGGTTATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGGAAAGAAAGCTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAG-TTTTTATGGTTATGGATGATNAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGGAAAATTGCATATAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410329" ref_strand="+" ref_description="SGN-E410329 [PPI-16-P15]">
      <seq>taaagctatgagtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgctgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcgctttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttcggtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgantagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52507" stop="53721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52807" g_stop="53422" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E410329" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52807" e_stop="53422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGAC</genome_strand>
        <mrna_strand>TAAAGCTATGAGTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCTGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCGCTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGANTAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730104" ref_strand="+" ref_description="SGN-E730104 [LA23AC08]">
      <seq>gctatgagtttaattgcaggttcatacgagagattcatttggggattcaagttgagatccctcaaaaacgatcagaattacgaactaacccctctattctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgccgctgtatccggcggcgccgatgacactatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactccgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcgtctgaagatggttcggtttccatatatgatgctgatccttttgttcatctcaagacggttaaagtgcatcgtaaggcagtgaattctatatgcattcatccgtcggggaggttggcattgactgttggaagagatgaatgtatggctatggttaatttggttagaggaaggagaagtttttattgtaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgccaaagctattctagagcttgacagtaagaagagggtgctttgtgccacttatgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacgttactagtggaaaacttgcatatagcattggagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52511" stop="55128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52811" g_stop="53458" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54828" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="785" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E730104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52811" e_stop="53458"/>
          <exon e_start="54692" e_stop="54828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGA</genome_strand>
        <mrna_strand>GCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACGTTACTAGTGGAAAACTTGCATATAGCATTGGAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445084" ref_strand="+" ref_description="SGN-E445084 [cSTA-44-J17]">
      <seq>gtttaattgccggttcatacgagagattcatttggggattcaagttgagatccaccaaaaacgatcagaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcaaaaattgggtcactgcaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaatactattcgtattcatccgtctgggaggttggcattgactgttggaagagatgaatgtatggctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52518" stop="53563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52818" g_stop="53263" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E445084" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52818" e_stop="53263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATG</genome_strand>
        <mrna_strand>GTTTAATTGCCGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCACCAAAAACGATCAGAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAAAAATTGGGTCACTGCACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATACTATTCGTATTCATCCGTCTGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561909" ref_strand="+" ref_description="SGN-E561909 [20245]">
      <seq>atcaaaattacgaactaacccctctcttctccttcccttcacatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgacacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggttccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccgtcggggaggttggcattgactgttggaagagatgaatgcatggctatggttaatttggttaggggaaggcgaagtttttattgcaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgacaagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaaattgcatatagcattgaagatgcacattctacccgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52581" stop="55096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52881" g_stop="53458" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54796" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="683" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E561909" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52881" e_stop="53458"/>
          <exon e_start="54692" e_stop="54796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTG</genome_strand>
        <mrna_strand>ATCAAAATTACGAACTAACCCCTCTCTTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGACACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGTTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGCATGGCTATGGTTAATTTGGTTAGGGGAAGGCGAAGTTTTTATTGCAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGACAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAAATTGCATATAGCATTGAAGATGCACATTCTACCCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484341" ref_strand="+" ref_description="SGN-E484341 [cSTE-13-A7]">
      <seq>tcttctccttcccttcaaatctctcaccaattaaatgcaccgccgtcgccggttctgctgctgtatccggcggcgccgatgaaacaatcaaaatctatgacctttctacttgctcagaaattgggtcactacaccactctgccaccgttacttcactttccttttttaccccttcttcattctccttccctcgtaaccttattgccgcttctgaagatggctccgtttccatatatgatgctgatccttttgttcatctcaaatcggtgaaagtgcatcgtaaggcagtgaattctatttgtattcatccatcagggaagttggcatttactgttggaagaaaagaatgccttgctattgttaatttggttaagggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52605" stop="53582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52905" g_stop="53283" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E484341" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52905" e_stop="53283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAG</genome_strand>
        <mrna_strand>TCTTCTCCTTCCCTTCAAATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCTGCTGTATCCGGCGGCGCCGATGAAACAATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCTGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCTTCTGAAGATGGCTCCGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAATCGGTGAAAGTGCATCGTAAGGCAGTGAATTCTATTTGTATTCATCCATCAGGGAAGTTGGCATTTACTGTTGGAAGAAAAGAATGCCTTGCTATTGTTAATTTGGTTAAGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547962" ref_strand="-" ref_description="SGN-E547962 [TUS-56-L1]">
      <seq>gaggaaggagaagtttttattgtaggttgggaaaagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgccaaagctattctagagcttgacagtaagaagagggtgctttgcgccacttatgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaacttgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacatagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagataagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatccatcaaatctatgaaaagaccacaggttggaaatactacttcaaatggacaacagctcgacgcaggtgaagaatcatagtgctgtaatttggtaatgacaatcacatagtgtatctgccatatttttcctttagattccccctccccctgaagttgttggaatcatatcaattttgttagttaaaagttgatcactcgaaatctattttgtaaggcgtgtgtattatttaattaatgaatatgagcagttatttaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="52977" stop="56130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53277" g_stop="53458" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54989" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="480" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55584" g_stop="55829" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="726" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="745"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E547962" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547962" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53277" e_stop="53458"/>
          <exon e_start="54692" e_stop="54989"/>
          <exon e_start="55584" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</genome_strand>
        <mrna_strand>GAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGCGCCACTTATGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274094" ref_strand="+" ref_description="SGN-E274094 [cLEN-8-P14]">
      <seq>aagaagcttctttagttaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgccaaagctattctagagcttgacagtaagaagagggtgctttgtgccacttatgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaacttgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacatagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53010" stop="55213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53310" g_stop="53458" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54913" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="371" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E274094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53310" e_stop="53458"/>
          <exon e_start="54692" e_stop="54913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAAC</genome_strand>
        <mrna_strand>AAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430368" ref_strand="+" ref_description="SGN-E430368 [STM-53-H9]">
      <seq>cttctttagtaaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaaattgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacatacagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagatgagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatcaatcaaatctatgaaaagaccagaggttggaaatactacttcaaatggacagcagctcgatgcaggtgaagaatcctagtgctgttgtaatttgctaatgacaatcacacagtgtatctgccatatttttcctttaaatttccccccttgaagttgntggaatcatatcaattttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53016" stop="56054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53316" g_stop="53458" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54989" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="441" r_length="298" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55584" g_stop="55754" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="612" r_length="171" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E430368" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53316" e_stop="53458"/>
          <exon e_start="54692" e_stop="54989"/>
          <exon e_start="55584" e_stop="55754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGC---TGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTA</genome_strand>
        <mrna_strand>CTTCTTTAGTAAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAAATTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACATACAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATGAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCAATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCAGAGGTTGGAAATACTACTTCAAATGGACAGCAGCTCGATGCAGGTGAAGAATCCTAGTGCTGTTGTAATTTGCTAATGACAATCACACAGTGTATCTGCCATATTTTTCCTTTAAATT--TCC-CCCCTTGAAGTTGNTGGAATCATATCAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465405" ref_strand="+" ref_description="SGN-E465405 [cPRO-21-C11]">
      <seq>cttctttagtaaattttagtgatggtggtgaaaagttttttatggttatggatgataagatttctgtacatgaatctgaagatgcgaaaactattctagagcttgatagtaagaagagggtgctttgtgccacttctgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaaattgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacatacagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagatgagccaaatccactggctgaggtcaatacaaaatccangctgacttgtctggctggatcatcaatcaaatctatgaaaagaccagagggtggaaatactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53016" stop="55291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53316" g_stop="53458" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54989" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="441" r_length="298" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E465405" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53316" e_stop="53458"/>
          <exon e_start="54692" e_stop="54989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT</genome_strand>
        <mrna_strand>CTTCTTTAGTAAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCGAAAACTATTCTAGAGCTTGATAGTAAGAAGAGGGTGCTTTGTGCCACTTCTGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAAATTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACATACAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATGAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCANGCTGACTTGTCTGGCTGGATCATCAATCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276369" ref_strand="+" ref_description="SGN-E276369 [cLEN-17-K15]">
      <seq>tgatggtggtgaaaagtttttcatgggtatggatgataagacttctgtacatgaatctgaagatgccaaagctattctagagcttgacagtaagaagagggtgctttgtgccacttatgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaacttgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53035" stop="55155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53335" g_stop="53458" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54855" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="288" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E276369" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53335" e_stop="53458"/>
          <exon e_start="54692" e_stop="54855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACAT</genome_strand>
        <mrna_strand>TGATGGTGGTGAAAAGTTTTTCATGGGTATGGATGATAAGACTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578434" ref_strand="-" ref_description="SGN-E578434 [LE12DH10]">
      <seq>aaaagtttttatgggttatggatgataagatttctgtacatgaatctgaagatgccaaagctattctagagcttgacagtaagaagagggtgctttgtgccacttatgggatgcatggtattttgtttactgggggagaggaccggagtattaaagcttgggacattactagtggaaaacttgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacatagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagataagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatccatcaaatctatgaaaagaccacaggttggaaatactacttcaaatggacaacagctcgacgcaggtgaagaatcatagtgctgtaatttggtaatgacaatcacatagtgtatctgccatatttttcctttagattccccctccccctgaagttgttggaatcatatcaattttgttagttaaaagttgatcactcgaaatctattttgtaaggcgtgtgtattatttaattaatgaatatgagcagttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="53046" stop="56130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53346" g_stop="53458" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54692" g_stop="54989" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="411" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55584" g_stop="55829" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="657" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="692"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E578434" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578434" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53346" e_stop="53458"/>
          <exon e_start="54692" e_stop="54989"/>
          <exon e_start="55584" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATGGTGAGTTTTCTGGACTATTACTAGATTGAACTCTCCTCAATTTTTGTACTGACATATTTTGATCACCAACTTACTGTATTGATTATCACTTTCTAGACCATTGCAAAAAAAAAATCATTATTTATCCATTATGAACTGTGCTTTTGTATTCACCTCTTGTGGTTGTGTGCCTCGTTAATTTGTGGAGATCCTTAGACCATTATACTTTCTTAAGAGTGTTTATGAGGCTCAACCAGTAGCAAGTAGAATAGCCATCTGTTACTCTGTCACTGAGTTGTAGAATGGCCATCTGTTACTCTGTCACTGGATTGTAGAATAGCCATTTGTTCCTCTGTCACTGGATTTTGGTGGCAAATTATTTGATTTTTCCGTCTGTAATGGGATCAGTTGGTGGGGGGATATACACTTTTATTTCTTCTTAACCCAAATAGACAGTAGAGAAGCTTATATAGCTAATCAAAGTCCTCAACTGAAGTTTTCAGAATGCAGTTTGCCTATATCTGTTTCTAGCAAGTCCCGTCTCTTGGTGTCTTGTTTGCACAGTGATAAAACATACTTTCAACCTGTTCATTAAGTGCATATATGGGTTAATTGAGATAATGTGGACTATACTGGAATCTGAAACATGAGAATGTTGATGGTGTACTGTCAAAAAAAAAATCAGATATCATGACCAAAAAGAATATGATGGAGTCGGGAAGCTACCTAGTTAGATTGTTCCTTAGGTATCATAGAAAGTGTGTTATTGGTGGTTAATATTTGCTACACATAAAAGGCTCCAGTTTTCTTATATATCTTAATTTCATATATTATTTAACGTATTTCTGAAAATGAGTCTCTTGTGTGCTTTCACTTTCTTTTTAAATTTTCAATCCTCATTTTTTTTGTATAATGGTATTGTTTGGGTCGACTTGCAACTGCTATTTTCCACCAGTGCAGGTGTTAGTTACTTTTATCCAATAAAATCACCTAGCATTTTTTTTTGTATATTCCAGATTCATTAACACCAAAAACCACACCTTGGGTGCTTTCTGTCCCATCCTTTTCCCTGCATGTTGTACATTCTTTTACTTGTCTATCATCTTGCACTTGGTGTCCTACCACCCCACTTTCAAAGCACGATGAAAACAATCAGGATTATATAGATCATGGAATGTTTAGTTGTAGGCTCCAGTTTTTTTTCCCTTCCAATTATTTGATTTACTTCTTGAAGCTGAAAGTAATATTTTACAGCATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</genome_strand>
        <mrna_strand>AAAAGTTTTTATGGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265408" ref_strand="-" ref_description="SGN-E265408 [cLEI-9-E14]">
      <seq>aaaacttgcatatagcattgaagatgcacattctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacatagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagataagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatccatcaaatctatgaaaagaccacaggttggaaatactacttcaaatggacaacagctcgacgcaggtgaagaatcatagtgctgtaatttggtaatgacaatcacatagtgtatctgccatatttttcctttagattccccctccccctgaagttgttggaatcatatcaattttgttagttaaaagttgatcactcgaaatctattttgtaaggcgtgtgtattatttaattaatgaatatgagcagttatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="54454" stop="56130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54754" g_stop="54989" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55584" g_stop="55829" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="482" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="500"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E265408" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265408" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54754" e_stop="54989"/>
          <exon e_start="55584" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</genome_strand>
        <mrna_strand>AAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225632" ref_strand="+" ref_description="SGN-E225632 [cLEL-17-K4](-)">
      <seq>tctacccgtgtgaaaggcattgttgtgctacacaaaaacagtgatggtgatgctgaagatcatcaacacatagtagcatcagcatcatcagatggggtcatacgtgtttgggatgttcgcatgactaacaaagataagccaaatccactggctgaggtcaatacaaaatccaggctgacttgtctggctggatcatccatcaaatctatgaaaagaccacaggttggaaatactacttcaaatggacaacagctcgacgcaggtgaagaatcatagtgctgtaatttggtaatgacaatcacatagtgtatctgccatatttttcctttagattccccctccccctgaagttgttggaatcatatcaattttgttagttaaaagttgatcactcgaaatctattttgtaaggcgtgtgtattatttaattaatgaatatgagcagttatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="54485" stop="56130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54785" g_stop="54989" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55584" g_stop="55829" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="451" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="468"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E225632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54785" e_stop="54989"/>
          <exon e_start="55584" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</genome_strand>
        <mrna_strand>TCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225762" ref_strand="+" ref_description="SGN-E225762 [cLEL-17-K4](-)">
      <seq>caaaaataccagctgacttgtctggctggatcatccaatcaaatctatgaaaagaccacaggttggaaatactacttcaaatggacaacagctcgacgcaggtgaagaatcatagtgctgtaatttggtaatgacaatcacatagtgtatctgccatatttttcctttagattccccctccccctgaagttgttggaatcatatcaattttgttagttaaaagttgatcactcgaaatctattttgtaaggcgtgtgtattatttaattaatgaatatgagcagttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="54649" stop="56130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54947" g_stop="54989" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55584" g_stop="55829" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="290" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="291" polyA_stop="306"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E225762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54947" e_stop="54989"/>
          <exon e_start="55584" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCC-ATCAAATGTGAGTCTTCCTTTGCTATTTGAATTTTCCCCTCTTGAAATGTTTGCCTAATTTTAAATGATTCAGATAGTCACTGCCTTGACTGGTAACTTTTTGATTGTTTTAATTTTGCCTATTCTGTTCTGTGGTGCTAAATCATTTCATTTAAGGTAAAATGAGAATATTAAAGCTAAAAATTGATAAATTTTGAAAAAGGGACATTCTTTTTGGGATAAACTATAAAGAAGAGTCTCACATCAATTGACTGACACTGGAGTAGGAAATACAAAAAATTGCCAATCATTTCTCTTGGTTGATAAGTATAATAGAATCTACAATCTTTTCATTGGCATTTTTTTTTCAAAATTAACTATCGGTGATCCATATTGAAAGAAGAGGGGAATGCCTTTGAGTCTAATGCCAAAGATAGAGGACTATTTTGGGCCTTCTCTCGAGAAACAGTTCACAGGAGCTAACCAGCATCTTATCAATTTAGATTGAAAAAGAGTCACAATTGTAAACATAGGCCGACAGCTATAAATTGCACGGAGTTTGCTACCTAAATAATATGAAACACTCGACTGATTTGTTGTCATTGTCATTGTCATCTTTCAGCTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</genome_strand>
        <mrna_strand>CAAAAATACCAGCTGACTTGTCTGGCTGGATCATCCAATCAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567095" ref_strand="+" ref_description="SGN-E567095 [11167]">
      <seq>ggaattttctttcttcttggttttcctcattcaaattacaatagttttcaagactctgccttttttccttctctgctaagcttttttcacctatttttgctatttagatctcaacttttatactttgctttccctctgtaaatttcttgttttgtagcaaaattcagagagtaggaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggaggaggcagagggaaatcttcagggaaatcaaaatttagtggaggtgcattttataccacatctgggagtgtgcctccagcaacaaactccagactttcaccccttccaccagaaccagctgatttctatgaccgcaatgcgtcaatcgatattcctcttgacaatgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggcggagagaacaggatcttaaaagggagagaagatgctgcggcaagagccggcattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57232" stop="60928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57532" g_stop="57782" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="315" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="426" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="489" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="524" r_length="35" r_score="0.853"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E567095" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57532" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTTCTTTCTTCTT-GTTTTTCTCATTCAAACTACTATAGTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATC-TAAAAAGGAGAGAAGATGCTGCTGCACGAG</genome_strand>
        <mrna_strand>GGAATTTTCTTTCTTCTTGGTTTTCCTCATTCAAATTACAATAGTTTTCAAGACTCTGCCTTTTT--TCCTTCTCTGCTAAGCTTTTTTCACCTATT-TTTGCTATTTAGATCTCAACTTTTATACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTAGCAAAATTCAGAGAGTAGGAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGAGGCAGAGGGAAATCTTCAGGGAAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCTGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCACCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATCGATATTCCTCTTGACAATGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGCGGAGAGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAAAAGGGAGAGAAGATGCTGCGGCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709051" ref_strand="+" ref_description="SGN-E709051 [FA42CC02]">
      <seq>cgcttgtttttctcattcaaactactatagttttcaagactctgcctttttcccccttctctgcttagccttttccacctattttttgctattcagatctcaagttttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgctcttgggacttattgcatgcctattatggaacattgtacctacaactacagcatggattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57247" stop="62376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57545" g_stop="57782" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="304" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="415" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="478" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="512" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="635" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62076" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="691" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E709051" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57545" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTTTTTCTCATTCAAACTACTATAGTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAA</genome_strand>
        <mrna_strand>CGCTTGTTTTTCTCATTCAAACTACTATAGTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGCTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTACCTACAACTACAGCATGGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746763" ref_strand="+" ref_description="SGN-E746763 [GI|47104519]">
      <seq>gttttcaagactctgcctttttcccccttctctgcttagccttttccacctattttttgctattcagatctcaagttttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaaggagatgtgaagatctggttcctttctatcatatacttcatatcaggtgttcctggagcctacttcatgtggtatcgtcctctgtatcgtgcgtttagaactgagggtgccatgaagtttgcgtggtttttcttgttttacttggttcacattgtattttgcgtctttgctgctgttgctcctccagtagtcttcagaggaaaatcccttacaggcatcctgcctgcggtggatctcatcggcaaaaatgtacttgttgggattttctacttcatcggttttgggttattttgtctcgagtcattgctgagcatttgggttattcagcaagtatacatgtatttccgaggaagtggtaaagccgcgcagatgaagcaagaagctgctagaggtgcccttagagcagcaatataattgaaagaaatgttcttggtagaaggctgttaaatatgcttttggtgattatatgttttagttagttcaatttgacatatatgctgcttgttttgcatatgcttttggtgattatgcttttatttatgactacttagaccaaagtgctgttaggaaaaagatttagaattccttttgtttaattggagacacaatctatattatgtttatattgctatttttgtcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57274" stop="64150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57574" g_stop="57782" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="386" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="449" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="483" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="606" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="669" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62171" g_stop="62264" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="763" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.615" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62520" g_stop="62565" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="809" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62822" g_stop="62889" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="877" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63132" g_stop="63180" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="926" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="63374" g_stop="63439" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="992" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="63536" g_stop="63847" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="993" r_stop="1304" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1305" polyA_stop="1321"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E746763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1304</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57574" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62264"/>
          <exon e_start="62520" e_stop="62565"/>
          <exon e_start="62822" e_stop="62889"/>
          <exon e_start="63132" e_stop="63180"/>
          <exon e_start="63374" e_stop="63439"/>
          <exon e_start="63536" e_stop="63847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAGGTAAACTTATCTGTCTTTTCAGAGAATTGAGCTGATTTACTTCAGAAATTATCAAACAGTTTTTAAATGCGATAACTGATCTTTTTGTTGGTTGTTATTGCTGAAGTAATAAATTCGAAAATTTTGTCAATGTTGCAGAGAACTGATTCTTTTTTTAAATTTTGCATATGCCTCCCACGAGTTTATCCCCTTGTTTGTCTCTTTTCTTTTGCCTTGTTTTCCCCTTCCCATACTAATCGTGGTATTTGGTCACAGAACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTGGTAAGTTCCTTATGCAATTGTTTTTGTCTATGTTATATACTTTTTGTTATTCTGCCATATGCTCAACGTGAATGACATGGGAATGGGTACTTTATAAGGATCCTTTAAAATACACTAGAAACTTTCAAAAAAGTTAAGATTACTCCCTACCGTGTACATACCTGTACCTGAGTCCATATTACAAAATACAAAGTCAAAGATATCTTGGATATCTGATTCAAATGTTCAGCTGTCATAGATTTTTCTGTGTTTGCAGGTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTACGTAAGTTCCATATTGCTTTTGACTTTTTAGAAAGAGTTGTAAAATTACATTAACACTGTCACCTTTTTCCAAAAAAAAAGAGACTCAAATAAATCCACTGTTTCCGGCATACTAGTTCCCTTCCAACCAAAACACTGAGTTCTGCTTTCGCCAAGCTTATTGCTTTTCAATTTCACATGGATTTCATCTATGAAGTAGCTAACCGTTAAAATGATCTGATGTTCTGTTATTTGTTGGAACAGAGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGGGTGAGTTATGACTATTTTCATCACAATCCATAGTATCCCTGACGTACCTTTTGCGCCTTTTTGTTTAGATGGACTACCTTTTCATTAATTTGAAATGGAAGAACAGAACCTACTCAAAACTTCTTTCTAATGAAAGTTTTAACTCAAGCTAATAAAGGTTATTAACATGAATCTGCTGTCCTTCCCTTATTAGATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAGGTCAGACTCATTTTCTGTTTATCTGCTTCCCAAAATATGCTTCTCACTCGATCCTCGAATGAAATCTCCTGGTTCATGTTTACTCTCATAATGCAGCAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTC</genome_strand>
        <mrna_strand>GTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG...............................................................................................................................................................................................................................................................AACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTG................................................................................................................................................................................................................................................................GTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC..................................................................................................................................................................................................................................................AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGG.................................................................................................................................................................................................ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAG................................................................................................CAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391696" ref_strand="+" ref_description="SGN-E391696 [TUS-27-H10]">
      <seq>gttttcaagactctgcctttttcccccttctctgcttagccttttccacctattttttgctattcagatctcaagttttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggccttgttctcgaggaaaaaaattggcctcctttcttcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57274" stop="60928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57574" g_stop="57782" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="275" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="386" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="449" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="483" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E391696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57574" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG</genome_strand>
        <mrna_strand>GTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270319" ref_strand="+" ref_description="SGN-E270319 [cLEM-1-L20]">
      <seq>ttttcaagactctgcctttttcccccttctctgcttagccttttccacctattttttgctattcagatctcaagttttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggaggggaacaggatctaaaaaggagagaagatgctgctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57275" stop="60915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57575" g_stop="57782" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="274" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="385" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="449" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60615" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="480" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E270319" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57575" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGA-GGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCAC</genome_strand>
        <mrna_strand>TTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424758" ref_strand="+" ref_description="SGN-E424758 [STM-44-E17]">
      <seq>ctgctaagctcttttcacctattttttctatttagatctcaacttttatactttgctttccctctgtaaatttcttgttttgtagcaaaattcagagagtgggaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggtggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatctgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacaatgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggcggagagaacaggatcttaaaaggagagaagatgctgcggcaagagccggcattgttcttgaggagaaaaattggcctccgttcttccctatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaactttcttgggacttattgcatgcctattatggaacattgtagctaccactacagcatggattaaagaaagagatgtaaagatctggttcctttctatcatttacttcatatcgggtgttcctggagcctacttcttgtggtatcgtcctctgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57305" stop="62554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57605" g_stop="57782" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="354" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="417" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="451" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="574" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="637" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.224" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62171" g_stop="62254" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="721" r_length="84" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E424758" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57605" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATC</genome_strand>
        <mrna_strand>CTGCTAAGCTCTTTTCACCTATTTTTT-CTATTTAGATCTCAACTTTTATACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTAGCAAAATTCAGAGAGTGGGAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCTGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAATGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGCGGAGAGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAAAAGGAGAGAAGATGCTGCGGCAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTTGAGGAGAAAAATTGGCCTCCGTTCTTCCCTATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACTTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACCACTACAGCATGGATTAAAGAAAGAG.......................................................................................ATGTAAAGATCTGGTTCCTTTCTATCATTTACTTCATATCGGGTGTTCCTGGAGCCTACTTCTTGTGGTATCGTCCTCTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453116" ref_strand="+" ref_description="SGN-E453116 [cSTS-18-N12]">
      <seq>ctgctaagctcttttcacctattttttctatttagatctcaacttttatactttgctttccctctgtaaatttcttgttttgtagcaaaattcagagagtgggaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggtggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatctgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacaatgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggcggagagaacaggatcttaaaaggagagaagatgctgcggcaagagccggcattgttcttgaggagaaaaattggcctccgttcttccctatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaactttcttgggacttattgcatgcctattatggaacattgtagctaccactacagcatggattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57305" stop="62376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57605" g_stop="57782" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="243" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="354" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="417" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="451" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="574" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62076" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="630" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E453116" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57605" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAA</genome_strand>
        <mrna_strand>CTGCTAAGCTCTTTTCACCTATTTTTT-CTATTTAGATCTCAACTTTTATACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTAGCAAAATTCAGAGAGTGGGAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCTGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAATGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGCGGAGAGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAAAAGGAGAGAAGATGCTGCGGCAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTTGAGGAGAAAAATTGGCCTCCGTTCTTCCCTATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACTTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACCACTACAGCATGGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323516" ref_strand="+" ref_description="SGN-E323516 [cTOC-7-K14]">
      <seq>agccttttccacctattttttgctattcagatctcaagtgttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57311" stop="61450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57611" g_stop="57782" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="238" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="349" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="412" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="446" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61150" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="554" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E323516" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57611" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCAT</genome_strand>
        <mrna_strand>AGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTGTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260473" ref_strand="+" ref_description="SGN-E260473 [cLEG-54-E17]">
      <seq>ttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaaggagatgtgaagatctggttcctttctatcatatacttcatatcaggtgttcctggagcctacttcatgtggtatcgtcctctgtatcgtgcgtttagaactgagggtgcccatgagtttgcgtggtttttcttggttttacttggttcacattgtattttgcgtncttgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57351" stop="63151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57651" g_stop="57782" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="198" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="309" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="372" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="406" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="529" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="592" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62171" g_stop="62264" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="686" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.615" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62520" g_stop="62565" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="733" r_length="47" r_score="0.870"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256">
            <donor d_prob="0.975" d_score="0.87"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62822" g_stop="62851" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="763" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E260473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57651" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62264"/>
          <exon e_start="62520" e_stop="62565"/>
          <exon e_start="62822" e_stop="62851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAGGTAAACTTATCTGTCTTTTCAGAGAATTGAGCTGATTTACTTCAGAAATTATCAAACAGTTTTTAAATGCGATAACTGATCTTTTTGTTGGTTGTTATTGCTGAAGTAATAAATTCGAAAATTTTGTCAATGTTGCAGAGAACTGATTCTTTTTTTAAATTTTGCATATGCCTCCCACGAGTTTATCCCCTTGTTTGTCTCTTTTCTTTTGCCTTGTTTTCCCCTTCCCATACTAATCGTGGTATTTGGTCACAGAACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTT-GTTTTACTTGGTAAGTTCCTTATGCAATTGTTTTTGTCTATGTTATATACTTTTTGTTATTCTGCCATATGCTCAACGTGAATGACATGGGAATGGGTACTTTATAAGGATCCTTTAAAATACACTAGAAACTTTCAAAAAAGTTAAGATTACTCCCTACCGTGTACATACCTGTACCTGAGTCCATATTACAAAATACAAAGTCAAAGATATCTTGGATATCTGATTCAAATGTTCAGCTGTCATAGATTTTTCTGTGTTTGCAGGTTCACATTGTATTTTGCGTCTTTGCTGCT</genome_strand>
        <mrna_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG...............................................................................................................................................................................................................................................................AACTGAGGGTGCCCATGAGTTTGCGTGGTTTTTCTTGGTTTTACTTG................................................................................................................................................................................................................................................................GTTCACATTGTATTTTGCGTNCTTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258605" ref_strand="+" ref_description="SGN-E258605 [cLEG-47-N8]">
      <seq>ttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttccaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaacgagatgtgaagatctggttcctttctatcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57351" stop="62501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57651" g_stop="57782" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="198" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="309" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="372" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="406" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="529" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="592" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.224" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62171" g_stop="62201" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="623" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E258605" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57651" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATA</genome_strand>
        <mrna_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCCAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAACGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258743" ref_strand="+" ref_description="SGN-E258743 [cLEG-50-K3]">
      <seq>ttacactttgctttccctctgtaaatttcttgttttgtggcaaaattcagaaagtagcaaagttttcttgaaatggccggccgttatgatcataacccttttgaagaagaagaagaagttaacccttttgctgatggcggaggcagagggaaatcttcagggcaatcaaaatttagtggaggtgcattttataccacatccgggagtgtgcctccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="57351" stop="62340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57651" g_stop="57782" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59005" g_stop="59070" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="198" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59445" g_stop="59555" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="309" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="372" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="406" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="528" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62021" g_stop="62040" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="548" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E258743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57651" e_stop="57782"/>
          <exon e_start="59005" e_stop="59070"/>
          <exon e_start="59445" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCTGTAAGTTCCTTCTTCTTCTCTTTTTTTCGTTTTTTTTTTGCGGTTTAATTCTGAAAGTTGCTATCTTTCCGTTCTGGGGTTTCCTATTTTGCTGCTGTGCAAGTGGGATGTTTGTTATTCTTCACTTGATCAAGTTTTTAGTGATTCTACTGCTCTGTTTTTGTGTGTGTGTTTCTGGGCGTTAACTCGTGCTATGCGGTTTAATTATGAAGTTATGATCGTTTTGTTTTCTGGGTTTTTCTATTGTTTATTGGTTTTGCAAATCAATATTTCAGTTTCCTGTAATGGTTAATTGAAAAGGATGTAGCTTTAATCTGACTTGAGTTGAATTTGAGGTTTTGGGTTTTATATATTTTGGAGTTGATCGTTTTTTATTGTGAAAGTGTAGTTGGAGCTTATTAATCCAAAAAAAAAATAAATTAAAAGTGTAGCTGGTGCGTCCTATTTCCCATGCTTTGTTGGATTGATTGATTTGGGACCATCTTAAGTGGTGTGATTGATTTTTCTGTAGGTTGACGTTTTCTATGGGAAACATTGAAATATATGATTATAGATTGTTATATGGAGTACTATGATTAGCGGAAGTTGTTTAGTTTTGGTATTCTGAGATATGGGGGAAATCTCTTTTCTTTCATTGAGTCCAGCTCTTTTATCTGTAATGTGGGTTTGATGGTGTCTGACCAGTTTAAGAGTTGGTGTCTAAAGGAAAATGGTTCCTCGTTTTCATTTCAAATGTGTTCCATTATGCAATTGGTAATAATGTTTCCCGTGGTGATGGATAAGGAAATCCAGGATCATATGTGGATCCGTTCCTTGGCTCTACTTAATCGGATATGTGTAATCTAATATAAATGATTGGCATAAAAGTGGTTGTAGTAAAAGTGATGAGTTAATTTCTTTTGGCTTTAATATTTGCAATACTGGAGGCATTTTGGAGAAACAATTAACATCATACATATTTGAATATTAGAACCCTGTAATCCTTGATGTGTTCCTAATATAGTATGTTCTGACTTATGTTCATTGTAATGTAAGTTTAGTGAATGATGTCACAGAGTCATGTTAGATCACTCATCACAGGATTTTAGATATTTTTTGCACTGATCTCCTCCTGTGCATGAACAATAATTATGGCATCTATGTGTGCAAGTGTTGGATAAATGGATGATTTAGTTTTTTTTTTTGTATAACAGTCTCAAGTATCTTCTGAAATTTGCTGCAGGATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACAGTAAGTTGGACATACTTTTCTCTGTCCTATTTGTGTATCTCAGTCTGCTTACATCGGGATCGGGGTTTGGAAACCAGTTTTCCTTATTTTTGTAAGAGATCAATATTTCTACCTTTACAAACTGCTGCTGTATCTGAACTAAGCCTTTGCTTATGCTTAGTTGCTTTATCTTTGTAACCTCCCTCATTTTTTTTCCTTTTTTTAGTGTGTGTATGTGTTGGGGGAATGGGGTTGGTGAGGTGAAGTAGAAAGGAAGAAAGTACGGGTAAATAGATGGATTGGTTTCTTTTGTTGAGTGTTTGAAGTTGCTAGTATCTTTTGCCATTTCCTCTTGATGTATTATCTTAATATTTTCCCTTTTATCAACTTTTCAGTCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTA</genome_strand>
        <mrna_strand>TTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA......................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAG-AAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337894" ref_strand="+" ref_description="SGN-E337894 [cTOE-14-K24]">
      <seq>tccagcaacaaactccagactttcaccccttccgccagaaccagctgatttctatgaccgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaaggagatgtgaagatctggttcctttctatcatatacttcatatcaggtgttcctggagcctacttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="59159" stop="62535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59459" g_stop="59555" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="160" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="194" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="317" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="380" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62171" g_stop="62235" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="445" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E337894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59459" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATG</genome_strand>
        <mrna_strand>TCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274178" ref_strand="+" ref_description="SGN-E274178 [cLEN-8-J11]">
      <seq>cgcaatgcgtcaattgatattcctcttgacagtgcttcggacctgaaaaagaaagaaaaagaattacagtctaaggagaatgaattgcggaggagggaacaggatctaaaaaggagagaagatgctgctgcacgagccggcattgttctcgaggagaaaaattggcctccgttcttcccaatcatccatcatgatattgcaaatgaaataccaattcatcttcaaaagctacaatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaaggagatgtgaagatctggttcctttctatcatatacttcatatcaggtgttcctggagcctacttcatgtggtatcgtcctctgtatcgtgcgtttagaactgagggtgccatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="59217" stop="62837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59517" g_stop="59555" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102">
            <donor d_prob="0.950" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59720" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="102" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60585" g_stop="60618" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="136" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61043" g_stop="61165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="259" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="322" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62171" g_stop="62264" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="416" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.615" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62520" g_stop="62537" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="434" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E274178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59517" e_stop="59555"/>
          <exon e_start="59658" e_stop="59720"/>
          <exon e_start="60585" e_stop="60618"/>
          <exon e_start="61043" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62264"/>
          <exon e_start="62520" e_stop="62537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCGGTAGATGGAACTTTCTGAATCTCTGTGATGATTTGTCATCTTTATCTTATTTGACATTAGTAGCTATGATGGTTTCTTACTTTAAGTTTGTTTGAATTAAAGGACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAGGTATGGGATGATGAAAATTTGAACCAGTGTTTTATTAATAGTCACACCCTTTTTCTGGGTGATGAATGTTTATTGTATTTCCCCTATATGACGGCTATATTTGTTAGTTTCTGTCTGTAATTTAGCATTATTATCTTGTTTCCCTCTTCTTTTCTCCTTCCATCTAATGTATTTTCTGGATTTCTTTTGGGGCGTTATTCTGGTTTATTCACTCTTTTAGAATGTGCTTACTTCTTCTACCACTGATGAACATGGATGAATTGCAAACGAACTTGTTCTGTAGTATATTCTTGAAAATAGATGGGAGGTTCCCTAGAGCATATGCCATAGGAATTGTGCGTTTACTGTTTGTGATATAGTTATACTTGCAGCCGAGGGGCTTCCTTTTGCCGTCCTCCTCTCATTGCAGTGATGTGATGGAGAGACTGGATGAACCGTTTGTTCTGATATCTGAAGATAAGTCTTGGAGATTCTTCCACCCACTTAACAAAAATTTATACGAGGGGGATAGGAGGTTTGTAGAGCACTTTCTATTACTTCCCTGCTTACCAAATATTGTTCCTATTCTTTGAGGGCCTATATAATCAAACAAGAACTCATTCAGGCGTCTACTTGTTTTGAGCCAGAAGTTGTGGATTAATTCTCCTGTGAAAAGTTCGCAGCTGTCTACTTTCTTTAATTTGGAATTAATTGGCATCTATTATGTCTCTTGTTGCCTACGGCTCTTCTTTCCTCCTATTCTCGTTACGTGTTACTAATCTATTTGAGTTGAAAATATCATTTCCCTCTATTTGCACCTCAGCTCTTTGTTGCTGGTGTATCAAAGTCATCTTTTCACTTATCTGGTTTCTCTTTGTTTTGCAGGATCTAAAAAGGAGAGAAGATGCTGCTGCACGAGGTGCTTTTTTTGCTTTTGCTTCAATTCTCTTTTTGGCGTTTATCCTTCTGCTGTCCTTCTGTTTTATCTTCAATGAATATTCAATCTTGCAATATTCTTAGACATTTAAACTACTAATATGAAGTGAGAAATCCATATATAGTTTCTAATTACATCCGAAGGAAGAAAGATAATGGTACCTTCTATGTTCCAGATTGAGCCTTCTGATTTTTATCTAGGGCAATTTAAATTTTTTCATCTTCTCATACTGGTCTCCACCATTCTTTCCACATTTGAAGTAGAATTTTGATGTTCAAATATAACTTTCAATTCTCTGATTTGCCTGAGTACCTCTCTAGTTTTGTAGAATAATGTATTTCAGATGGAACTTCTGTCCTGTGATTATTGTAGTATCTTACAAGTTCAGTTCATCTTTCAATTGCAGCCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAGGTAAACTTATCTGTCTTTTCAGAGAATTGAGCTGATTTACTTCAGAAATTATCAAACAGTTTTTAAATGCGATAACTGATCTTTTTGTTGGTTGTTATTGCTGAAGTAATAAATTCGAAAATTTTGTCAATGTTGCAGAGAACTGATTCTTTTTTTAAATTTTGCATATGCCTCCCACGAGTTTATCCCCTTGTTTGTCTCTTTTCTTTTGCCTTGTTTTCCCCTTCCCATACTAATCGTGGTATTTGGTCACAGAACTGAGGGTGCCATGAA</genome_strand>
        <mrna_strand>CGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG......................................................................................................GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG...............................................................................................................................................................................................................................................................AACTGAGGGTGCCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391945" ref_strand="+" ref_description="SGN-E391945 [TUS-27-H10](-)">
      <seq>aatatgttgcatttacaacgttcttgggacttattgcatgcctattatggaacattgtagctacaactacagcatggattaaagaaggagatgtgaagatctggttcctttctatcatatacttcatatcaggtgttcctggagcctacttcatgtggtatcgtcctctgtatcgtgcgtttagaactgagggtgccatgaagtttgcgtggtttttcttgttttacttggttcacattgtattttgcgtctttgctgctgttgctcctccagtagtcttcagaggaaaatcccttacaggcatcctgcctgcggtggatctcatcggcaaaaatgtacttgttgggattttctacttcatcggttttgggttattttgtctcgagtcattgctgagcatttgggttattcagcaagtatacatgtatttccgaggaagtggtaaagccgcgcagatgaagcaagaagctgctagaggtgcccttagagcagcaatataattgaaagaaatgttcttggtagaaggctgttaaatatgcttttggtgattatatgttttagttagttcaatttgacatatatgctgcttgttttgcatatgcttttggtgattatgcttttatttatgactacttagaccaaagtgctgttaggaaaaagatttagaattccttttgtttaattggagacacaatctatattatgtttatattgctatttttgtcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="60839" stop="64150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61139" g_stop="61165" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62021" g_stop="62083" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="90" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.224" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62171" g_stop="62264" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="184" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.615" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62520" g_stop="62565" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="230" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62822" g_stop="62889" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="298" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63132" g_stop="63180" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="347" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63374" g_stop="63439" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="413" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63536" g_stop="63847" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="725" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="738"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E391945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61139" e_stop="61165"/>
          <exon e_start="62021" e_stop="62083"/>
          <exon e_start="62171" e_stop="62264"/>
          <exon e_start="62520" e_stop="62565"/>
          <exon e_start="62822" e_stop="62889"/>
          <exon e_start="63132" e_stop="63180"/>
          <exon e_start="63374" e_stop="63439"/>
          <exon e_start="63536" e_stop="63847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTTGCATTTACAACGTTCTTGGGTATGTTATCTCCTGCTTACCATGTCTTCGGTTATTCTATTTGGAACACCGTATATGGTGCATACTTTAGATGGGTTTGTGTTCTTATATGGTGTACCCTCCGTCCAAAAAATTGTGAGGTTTGGAGCGAATTCGTCACACATCTAATTTTAAAATCAACTCCTTGATTTGTTTAAATTAAATTACACATTTAAAAAATACATCGAAGCACTAAACACAACTTCTTGTAGTAGAAAATATTTAGAGATGTTCGGATAGAATTGTCAGAAAAATAGTTGGACTCTAATAGTAATGTACCAAAAAAGTCAGATCCCCATATAATGCCTTTTTGGAGGCCTTCAAGGAATTAGGTACAATATTGCAGAAACTAAAAAGACCCTAGTTTAGTCCTTATAGAAAGAAAAACAGAGATTTGAATTTATAATCCTTCTCTTTTTCGTCCCCCTTCCCATGTAACTTGGACTTAAAAATGTGTGCATACCAGTAAGAGTATAAGTGTCTGGTAGAGGTGGGGGAATTGTTTTTGCAAAATTTCTAGTATTTTCGAATGATCTTCCTGTAAGTGCCACTATGTCTATTTCGGTACACTTTACTGCACCAGCAGACAAGTGAGGGATCCATATGTTTTTGCTCACTTTCGATCAACATTGTAACTGAATCTTATGGTGAAAATTGCAACTCAAACAAGCTTTTGCTAGTGAATTGTTCAGGTTGTTGAATAAATTTTTTTTGCACGTTATAACTTGATAGATCTGTGTGCCTGGAATAATTTTTTGAGTATGATTTGTCATTTTGTACTGTATGTGAGTTTCTTGTTTTTCTCTTGCTAATGAGATATATGCTGATCGTGAGCAGGACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAGGTACATCGAATCGGCATGTCACCCTGCCTCTACATGCCATTACTTATCCGATGAAGTCAGAATACTTACTTTAGTTTTTGTCTGTAGATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAGGTAAACTTATCTGTCTTTTCAGAGAATTGAGCTGATTTACTTCAGAAATTATCAAACAGTTTTTAAATGCGATAACTGATCTTTTTGTTGGTTGTTATTGCTGAAGTAATAAATTCGAAAATTTTGTCAATGTTGCAGAGAACTGATTCTTTTTTTAAATTTTGCATATGCCTCCCACGAGTTTATCCCCTTGTTTGTCTCTTTTCTTTTGCCTTGTTTTCCCCTTCCCATACTAATCGTGGTATTTGGTCACAGAACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTGGTAAGTTCCTTATGCAATTGTTTTTGTCTATGTTATATACTTTTTGTTATTCTGCCATATGCTCAACGTGAATGACATGGGAATGGGTACTTTATAAGGATCCTTTAAAATACACTAGAAACTTTCAAAAAAGTTAAGATTACTCCCTACCGTGTACATACCTGTACCTGAGTCCATATTACAAAATACAAAGTCAAAGATATCTTGGATATCTGATTCAAATGTTCAGCTGTCATAGATTTTTCTGTGTTTGCAGGTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTACGTAAGTTCCATATTGCTTTTGACTTTTTAGAAAGAGTTGTAAAATTACATTAACACTGTCACCTTTTTCCAAAAAAAAAGAGACTCAAATAAATCCACTGTTTCCGGCATACTAGTTCCCTTCCAACCAAAACACTGAGTTCTGCTTTCGCCAAGCTTATTGCTTTTCAATTTCACATGGATTTCATCTATGAAGTAGCTAACCGTTAAAATGATCTGATGTTCTGTTATTTGTTGGAACAGAGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGGGTGAGTTATGACTATTTTCATCACAATCCATAGTATCCCTGACGTACCTTTTGCGCCTTTTTGTTTAGATGGACTACCTTTTCATTAATTTGAAATGGAAGAACAGAACCTACTCAAAACTTCTTTCTAATGAAAGTTTTAACTCAAGCTAATAAAGGTTATTAACATGAATCTGCTGTCCTTCCCTTATTAGATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAGGTCAGACTCATTTTCTGTTTATCTGCTTCCCAAAATATGCTTCTCACTCGATCCTCGAATGAAATCTCCTGGTTCATGTTTACTCTCATAATGCAGCAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTC</genome_strand>
        <mrna_strand>AATATGTTGCATTTACAACGTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG.......................................................................................ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG...............................................................................................................................................................................................................................................................AACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTG................................................................................................................................................................................................................................................................GTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC..................................................................................................................................................................................................................................................AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGG.................................................................................................................................................................................................ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAG................................................................................................CAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244376" ref_strand="-" ref_description="SGN-E244376 [cLEF-3-K14]">
      <seq>atcgtgcgtttagaactgagggtgccatgaagtttgcgtggtttttcttgtttaacttggttcacattgtattttgcgtcttcgctgctgttgctcctccagtagtcttcagaggaaaatcccttacaggcatcctgcctgcggtggatctcatcggcaaaaatgtacatgttgggattttctacttcatcggttttgggttattttgtcccgagtcattgctgagcatttgggttattcagcaagtaaacatgtatttccgaggaagtggtaaagccgcgcagatgaagcaagaagctgctagaggtgcccttagagcagcaatataattgaaagaaatgttcttggtagaaggctgttaaatatgcttttggtggttatatgttttagttagttcaatttgacatatatgctgcttgttttgcataagattttggttattatgcttttatttatgactacttagaccaaagtgctgttaggaaaaagatttagaattccttttgtttaattggagacgcaatttatattatgtttatattgatatttttgtcaaaaatacaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="62218" stop="96797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62252" g_stop="62264" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.615" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62520" g_stop="62565" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="59" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62822" g_stop="62889" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="127" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63132" g_stop="63180" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="176" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63374" g_stop="63439" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="242" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63536" g_stop="63847" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="554" r_length="312" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63848" i_stop="64518" i_length="671">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64519" g_stop="64555" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="590" r_length="36" r_score="0.595"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E244376" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62252" e_stop="62264"/>
          <exon e_start="62520" e_stop="62565"/>
          <exon e_start="62822" e_stop="62889"/>
          <exon e_start="63132" e_stop="63180"/>
          <exon e_start="63374" e_stop="63439"/>
          <exon e_start="63536" e_stop="63847"/>
          <exon e_start="64519" e_stop="64555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCGTTTAGGTAAACTTATCTGTCTTTTCAGAGAATTGAGCTGATTTACTTCAGAAATTATCAAACAGTTTTTAAATGCGATAACTGATCTTTTTGTTGGTTGTTATTGCTGAAGTAATAAATTCGAAAATTTTGTCAATGTTGCAGAGAACTGATTCTTTTTTTAAATTTTGCATATGCCTCCCACGAGTTTATCCCCTTGTTTGTCTCTTTTCTTTTGCCTTGTTTTCCCCTTCCCATACTAATCGTGGTATTTGGTCACAGAACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTGGTAAGTTCCTTATGCAATTGTTTTTGTCTATGTTATATACTTTTTGTTATTCTGCCATATGCTCAACGTGAATGACATGGGAATGGGTACTTTATAAGGATCCTTTAAAATACACTAGAAACTTTCAAAAAAGTTAAGATTACTCCCTACCGTGTACATACCTGTACCTGAGTCCATATTACAAAATACAAAGTCAAAGATATCTTGGATATCTGATTCAAATGTTCAGCTGTCATAGATTTTTCTGTGTTTGCAGGTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTACGTAAGTTCCATATTGCTTTTGACTTTTTAGAAAGAGTTGTAAAATTACATTAACACTGTCACCTTTTTCCAAAAAAAAAGAGACTCAAATAAATCCACTGTTTCCGGCATACTAGTTCCCTTCCAACCAAAACACTGAGTTCTGCTTTCGCCAAGCTTATTGCTTTTCAATTTCACATGGATTTCATCTATGAAGTAGCTAACCGTTAAAATGATCTGATGTTCTGTTATTTGTTGGAACAGAGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGGGTGAGTTATGACTATTTTCATCACAATCCATAGTATCCCTGACGTACCTTTTGCGCCTTTTTGTTTAGATGGACTACCTTTTCATTAATTTGAAATGGAAGAACAGAACCTACTCAAAACTTCTTTCTAATGAAAGTTTTAACTCAAGCTAATAAAGGTTATTAACATGAATCTGCTGTCCTTCCCTTATTAGATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAGGTCAGACTCATTTTCTGTTTATCTGCTTCCCAAAATATGCTTCTCACTCGATCCTCGAATGAAATCTCCTGGTTCATGTTTACTCTCATAATGCAGCAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTCATACTCATTTCTTGTAATATGTTTCTTCTGAAAATCAAACATTCTTCTCCAATAACATCTTGTAATGAATTTTGATTTGAAAGTTGAAAGAACCTACAGAGAATTGATTTAGTAAGTTGAATTATAATGTTTTTTTTTCGGATTCGAAACTCATAAAGGACTTTTAAGGGAGACAATAGAGAGGCCTTTGATACATCAGAGTGAATTAACTCAAATAGTACATACACAATAATGACACGCGGTATTAAAATATTGTTTTAGAATATCTTAAATATATTCTTTCTCTTGAAAAAATGTATAATAATACATCTACTGAGTGCAATTGAATGATATTAAATCTTTTCAATTTTTTGTTTATTTATGATTCGATGCTAATTTCGTAAATCTTTTTTTTCTTAATCAATCTATAGATATGATATAATATAAGGTTACAACTCACAATTAATAAGAAGTTGGCACCATATTAATGAAGTATTAATCTCATAATCATAACCCCTCCCCCTCTTCAAGTTCTTAGTCAATGTGATTAAATGTATCCAGCTAATTGAGTACAAACATCTTTAATTCACCCAAATCTATCAATTTGTCCACAATTTAGAATTTCAAAGATGTATAATTTCCCACGCAACATTCTTAAACTACTATATCCTTCGAAATAGTTGCAGAGCCAGAAAATTTTAAATTCAAAAAACGATTCAACAATACTAA</genome_strand>
        <mrna_strand>ATCGTGCGTTTAG...............................................................................................................................................................................................................................................................AACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTAACTTG................................................................................................................................................................................................................................................................GTTCACATTGTATTTTGCGTCTTCGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC..................................................................................................................................................................................................................................................AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACATGTTGGG.................................................................................................................................................................................................ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCCCGAGTCATTGCTGAGCATTTGGGTTATTCAG................................................................................................CAAGTAAACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGGTTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATAAGATTTTGGTTATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACGCAATTTATATTATGTTTATATTGATATTTTTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATACAAA-AAAAAAAAAAACTCGAGACTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350547" ref_strand="+" ref_description="SGN-E350547 [cTOS-5-M18]">
      <seq>tattttgcgtctttgctgctgttgctcctccagtagtcttcagaggaaaatcccttacaggcatcctgcctgcggtggatctcatcggcaaaaatgtacttgttgggattttctacttcatcggttttgggttattttgtctcgagtcattgctgagcatttgggttattcagcaagtatacatgtatttccgaggaagtggtaaagccgcgcagatgaagcaagaagctgctagaggtgcccttagagcagcaatataattgaaagaaatgttcttggtagaaggctgttaaatatgcttttggtgattatatgttttagttagttcaatttgacatatatgctgcttgttttgcatatgcttttggtgattatgcttttatttatgactacttagaccaaagtgctgttaggaaaaagatttagaattccttttgtttaattggagacacaatctatattatgtttatattgctatttttgtcatactcatttcttgtaatatgtttcttctgaaaatcaaacattcttctccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="62532" stop="64204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62832" g_stop="62889" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63132" g_stop="63180" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="107" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63374" g_stop="63439" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="173" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63536" g_stop="63908" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="546" r_length="373" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E350547" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62832" e_stop="62889"/>
          <exon e_start="63132" e_stop="63180"/>
          <exon e_start="63374" e_stop="63439"/>
          <exon e_start="63536" e_stop="63908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTACGTAAGTTCCATATTGCTTTTGACTTTTTAGAAAGAGTTGTAAAATTACATTAACACTGTCACCTTTTTCCAAAAAAAAAGAGACTCAAATAAATCCACTGTTTCCGGCATACTAGTTCCCTTCCAACCAAAACACTGAGTTCTGCTTTCGCCAAGCTTATTGCTTTTCAATTTCACATGGATTTCATCTATGAAGTAGCTAACCGTTAAAATGATCTGATGTTCTGTTATTTGTTGGAACAGAGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGGGTGAGTTATGACTATTTTCATCACAATCCATAGTATCCCTGACGTACCTTTTGCGCCTTTTTGTTTAGATGGACTACCTTTTCATTAATTTGAAATGGAAGAACAGAACCTACTCAAAACTTCTTTCTAATGAAAGTTTTAACTCAAGCTAATAAAGGTTATTAACATGAATCTGCTGTCCTTCCCTTATTAGATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAGGTCAGACTCATTTTCTGTTTATCTGCTTCCCAAAATATGCTTCTCACTCGATCCTCGAATGAAATCTCCTGGTTCATGTTTACTCTCATAATGCAGCAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTCATACTCATTTCTTGTAATATGTTTCTTCTGAAAATCAAACATTCTTCTCCAATAACATCTT</genome_strand>
        <mrna_strand>TATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC..................................................................................................................................................................................................................................................AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGG.................................................................................................................................................................................................ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAG................................................................................................CAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTCATACTCATTTCTTGTAATATGTTTCTTCTGAAAATCAAACATTCTTCTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224202" ref_strand="+" ref_description="SGN-E224202 [cLEL-19-B16](-)">
      <seq>gtgggttttggtggaaaatttgggcctggtggagggtttaatattcctgggcttggtggtggagtatttggtggtggatttggaggcccaaaaggtggatatggaaaaggtggagtcataaggtctagtgttgtgtgtaaagtaaaaggcccatgttttggtatgaaattaatatgtccagcaaaatgttataaatcatattctagtgctggaaaaggttatggttttggtggtggatctggtggatgtactatggattgcaagaagaaatgtcttgcttattgttaaccccacccccacccaaaaaaaaaataaaatatacctaagtaagttatttgttatatttatattacttataatatgtgttgtttggttgtatttgttttgtcatgtggaacaatatattatgttagctaagttctacatttttatgatacaagtaatagaattcatggtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="65365" stop="64305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65065" g_stop="64606" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="475"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E224202" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65065" e_stop="64606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGTTTTGGTGGGATATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCA-CCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</genome_strand>
        <mrna_strand>GTGGGTTTTGGTGGAAAATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCACCCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224023" ref_strand="+" ref_description="SGN-E224023 [cLEL-19-B16](-)">
      <seq>ctgggcttggtggtggagtatttggtggtggatttgaaggcccaaaaggtggatatggaaaaggtggagtcataaggtctagtgttgtgtgtaaagtaaaaggcccatgttttggtatgaaattaatatgtccagcaaaatgttataaatcatattctagtgctgnaaaaggttatggttttggtggtggatctggtggatgtactatggattgcaagaagaaatgtcttgcttattgttaaccccacccccacccaaaaaaaaaataaaatatacctaagtaagttatttgttatatttatattacttataatatgtgttgtttggttgtatttgttttgtcatgtggaacaatatattatgttagctaagttctacatttttatgatacaagtaatagaattcatggtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="65319" stop="64305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65019" g_stop="64606" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="429"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E224023" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65019" e_stop="64606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCA-CCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</genome_strand>
        <mrna_strand>CTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGAAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGNAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCACCCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619112" ref_strand="+" ref_description="SGN-E619112 [69798]">
      <seq>gttgtgtgtaaagaaaaaggcccatgtttgggtatgaaattaatatgtccagcaaaatgttataaagcatattcaagtgctggaaaaggttatggttttggtggtggatctggtggatgtactatggattgcaagaagaaatgtcttgcttattgttaagcaaaaaaaataaaatagctaagtaagttattatatttatattacttataatatgtgttgtttgggtgtatttgttttgtcatgtggaacaatatattatgtacctaagttctacatttttatgatataagtaatagaattaatgatgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="65236" stop="64305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64936" g_stop="64613" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="321"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E619112" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64936" e_stop="64613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCACCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATG</genome_strand>
        <mrna_strand>GTTGTGTGTAAAGAAAAAGGCCCATGTTTGGGTATGAAATTAATATGTCCAGCAAAATGTTATAAAGCATATTCAAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTT------A----A-GC--AAAAAAAAT-AAA-ATAGCTAAGTAAGTTA----TTATATTTATATTACTTATAATATGTGTTGTTTGGGTGTATTTGTTTTGTCATGTGGAACAATATATTATG-TACCTAAGTTCTACATTTTTATGATATAAGTAATAGAATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310417" ref_strand="+" ref_description="SGN-E310417 [cTOA-10-A16]">
      <seq>gatgctcctcgttttggactgaaaggtcctggtactgatctggatgctaaagctgttcttgaggccataagtcgttgcagcttagcaggtgccagaggtagcaagttttgggtactggatcctgttgatggcacgttgggtttcgtgcgtggagatcaatatgccattgctttggcattgatagaagacggagaacctgtgcttggggttctcggatgtccaaattatcctatgaagaaggaatggcttagttatcaaaatggttataggagaatcttatctaggttgagctcctctacatctgaatcttcggatagaggttctgtactttatgcaaggaaaggtggcggcagggcctggatgcaaccgttactgcgcggagaaagtaagtttgtgtggccaaacgctgcaagggaaattagagtatcctccatcgataacccagcactagctaccttttgtgaaccagttgagaaggcaaattcaagccattcattcacagcaggactggctcatagtgttggacttcggaaccagccgttacgtgtatacagcatggtaaagtatgcagccatagctcgaggagatgctgaaatatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="68730" stop="67292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68430" g_stop="67901" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67900" i_stop="67665" i_length="236">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.619" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67664" g_stop="67592" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="603" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E310417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68430" e_stop="67901"/>
          <exon e_start="67664" e_stop="67592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAGGCCATAAGTCGTTGCAGCTTAGCAGGTGCCAGAGGTAGCAAGTTTTGGGTACTGGATCCTGTTGATGGCACGTTGGGTTTCGTGCGTGGAGATCAATATGCCATTGCTTTGGCATTGATAGAAGACGGAGAACCTGTGCTTGGGGTTCTCGGATGTCCAAATTATCCTATGAAGAAGGAATGGCTTAGTTATCAAAATGGTTATAGGAGAATCTTATCTAGGTTGAGCTCCTCTACATCTGAATCTTCGGATAGAGGTTCTGTACTTTATGCAAGGAAAGGTGGCGGCAGGGCCTGGATGCAACCGTTACTGCGCGGAGAAAGTAAGTTTGTGTGGCCAAACGCTGCAAGGGAAATTAGAGTATCCTCCATCGATAACCCAGCACTAGCTACCTTTTGTGAACCAGTTGAGAAGGCAAATTCAAGCCATTCATTCACAGCAGGACTGGCTCATAGTGTTGGACTTCGGTAAATATCTCTCACAATTCCCTCTCGTATTCCAAAACTGATCTTCCTATCTTCCAGTCAACGTGTGTAACTTTCAAGATTCTATATTTACGATTGCTTACTAGTTGTCTTAGCATGTCGCATCTATTTCTGGATATGTTTTTCCCATGACAGCTATAATGCAATGCAACCTCTAGTATGATGTTGATGCATTCAAGATGTCTTATAAATCTCAGCTAACAGCATATGAACTGCAGGAACCAGCCGTTACGTGTATACAGCATGGTAAAGTATGCAGCCATAGCTCGAGGAGATGCTGAGATATACATG</genome_strand>
        <mrna_strand>GATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAGGCCATAAGTCGTTGCAGCTTAGCAGGTGCCAGAGGTAGCAAGTTTTGGGTACTGGATCCTGTTGATGGCACGTTGGGTTTCGTGCGTGGAGATCAATATGCCATTGCTTTGGCATTGATAGAAGACGGAGAACCTGTGCTTGGGGTTCTCGGATGTCCAAATTATCCTATGAAGAAGGAATGGCTTAGTTATCAAAATGGTTATAGGAGAATCTTATCTAGGTTGAGCTCCTCTACATCTGAATCTTCGGATAGAGGTTCTGTACTTTATGCAAGGAAAGGTGGCGGCAGGGCCTGGATGCAACCGTTACTGCGCGGAGAAAGTAAGTTTGTGTGGCCAAACGCTGCAAGGGAAATTAGAGTATCCTCCATCGATAACCCAGCACTAGCTACCTTTTGTGAACCAGTTGAGAAGGCAAATTCAAGCCATTCATTCACAGCAGGACTGGCTCATAGTGTTGGACTTCG............................................................................................................................................................................................................................................GAACCAGCCGTTACGTGTATACAGCATGGTAAAGTATGCAGCCATAGCTCGAGGAGATGCTGAAATATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206325" ref_strand="+" ref_description="SGN-E206325 [cLEC-23-I8]">
      <seq>acatgttcattctaaggaggatgactctcctgtcacaattgctgattggagcgtccaagcaattgtcagctgggtactgtccgaggcttatggcagtaacgtctctattgttgctgaagaagatgtagaagctctttccaaggctagcgcagctggtctgttagaagcagtagtaagaactgtgaatgagtgtctagccgatgctcctcgttttggactgaaaggtcctggtactgatctggatgctaaagctgttcttgaggccataagtcgttgcagcttagcaggtgccagaggtagcaagttttgggtactggatcctgttgatggcacgttgggtttcgtgcgtggagatcaatatgccattgctttggcattgatagaagacggagaacctgtgcttggggttctcggatgtccaaattatcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="70266" stop="67898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69966" g_stop="69923" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69922" i_stop="68586" i_length="1337">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68585" g_stop="68198" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="432" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E206325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69966" e_stop="69923"/>
          <exon e_start="68585" e_stop="68198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTGGTATGTCTTCTTGTTGTTCTATATATTGTGTTTTGGTGAATTGGGTTTTTGTAGGTGAATTGGGGAAGGAGAAAGATTGTGTCTTTTTGCTTTTTTGAGTATTCATTTTGGATATTGTTGATTAGATAGTATGGGTAGGAGTGTGTGGTTTGGGATCCTTATCTCGTGAGCTAGCTTTTAGGATTAAATTACATTATTTAATTTTATTTGGAGTTCTATGTAGTCCATGTTTTCTCCTGTGAAATGGAACATACTTTTTTGGTTTTCTGTAGTGCTATTGAAGTTGTGTGGGAGTTAAAGCATACTAACCTAATTAATCTTCGAGTGTATTTGTTTAAACTTTAAAGCTCACAATGTATAAAGACAACCTAATGCACTATGTACTGTTATGTTTTACGACTTGTAGACTTCTAAAAAAGCACAAAATAACAGTCATTCAAGCCAAGTCATTGATGCCTTTCTCTTTGTGATGAGTTGCTGCCTTGTCCAAATATGTTTGTTGAGAAAAGTAACAGGAAGAGTCAAAGAGAAACAAGAAAAGATTTTGTGTTGTACTCCTACATGATCATTTAGTTATTAAATTTATAAATAAGTGTATATGATCGTCTTTTTTTTTTTTCGTCACTGAGTTTCAAGGAAACAAACATAAATCATAAAGTTACCATACAACATTGAGGTAACCACAATCTTCTCCGAAGGTGGCATCCCTCGTGATGGGAACAGTTTGATGATCATGGCTGGATATTGAATTCCATTCATTTTTACTCAACAAATCCATTAATATATCCTTTTTGTCTCCCAAGAAGTAATAATCTGGTCTAAGAAACTTTTTAACATAAATATTATCATTGTCTGATTTATAGTAGGAAACTTTACTGGTGATGATAGACTGAAGATTATGTCATTTATGTTGTAAATACTGACAATAAAAGAACATATGACATACAAGGTTGTACTATCTTAATAAGAGAATTATAGAATCAGAATCATAAGATGTCCCAGACTGGGACTGAAGAAGATTTTATCTCTGAGGAGCAAGTGCTCTGTCTCTAAAACTATATCCATCTCTTTCCTGTTTCTATCTATATAACATGGAATCATTTATGGGTAAGTCTACTTTTATGTCACAAAGTTGAACGGGTGTGACATGGGTATAGGTGCTTCATGCTGAGTTTTCAAATTAAATTACAATAAAAATTGACGTGAAAACAAATATGGATCCATGTAACATTAGGTGCAATTTTGGTCCAATGCATTAAGTTGGACCTAAATCTTCAAACGTGAAAGCATCAAGCTTTACTTTCTGATGTCATGCTGTGGTTTTCATTACTTGTTAGATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAGAAGCAGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAGGCCATAAGTCGTTGCAGCTTAGCAGGTGCCAGAGGTAGCAAGTTTTGGGTACTGGATCCTGTTGATGGCACGTTGGGTTTCGTGCGTGGAGATCAATATGCCATTGCTTTGGCATTGATAGAAGACGGAGAACCTGTGCTTGGGGTTCTCGGATGTCCAAATTATCCTAT</genome_strand>
        <mrna_strand>ACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAGAAGCAGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAGGCCATAAGTCGTTGCAGCTTAGCAGGTGCCAGAGGTAGCAAGTTTTGGGTACTGGATCCTGTTGATGGCACGTTGGGTTTCGTGCGTGGAGATCAATATGCCATTGCTTTGGCATTGATAGAAGACGGAGAACCTGTGCTTGGGGTTCTCGGATGTCCAAATTATCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319104" ref_strand="+" ref_description="SGN-E319104 [cTOB-16-A1]">
      <seq>gctgttcatatggcttgtttgctctgccagagggttcaagaaaatttgttatctgaaacctctgaacatgttcattctaaggaggatgactctcctgtcacaattgctgattggagcgtccaagcaattgtcagctgggtactgtccgaggcttatggcagtaacgtctctattgttgctgaagaagatgtagaagctctttccaaagctagcgcagctggtctgttagaagcaacagtaagaactgtgaatgagtgtctagccgatgctcctcgttttggactgaaaggtcctggtactgatctggatgctaaagctgtccttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="70331" stop="68068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70031" g_stop="69923" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69922" i_stop="68586" i_length="1337">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68585" g_stop="68368" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="327" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E319104" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70031" e_stop="69923"/>
          <exon e_start="68585" e_stop="68368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTCATATGGCTTGTTTGCTCTGCCAGAGGGTTCAAGAAAATTTGTTATCTGAAACCTCTGAACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTGGTATGTCTTCTTGTTGTTCTATATATTGTGTTTTGGTGAATTGGGTTTTTGTAGGTGAATTGGGGAAGGAGAAAGATTGTGTCTTTTTGCTTTTTTGAGTATTCATTTTGGATATTGTTGATTAGATAGTATGGGTAGGAGTGTGTGGTTTGGGATCCTTATCTCGTGAGCTAGCTTTTAGGATTAAATTACATTATTTAATTTTATTTGGAGTTCTATGTAGTCCATGTTTTCTCCTGTGAAATGGAACATACTTTTTTGGTTTTCTGTAGTGCTATTGAAGTTGTGTGGGAGTTAAAGCATACTAACCTAATTAATCTTCGAGTGTATTTGTTTAAACTTTAAAGCTCACAATGTATAAAGACAACCTAATGCACTATGTACTGTTATGTTTTACGACTTGTAGACTTCTAAAAAAGCACAAAATAACAGTCATTCAAGCCAAGTCATTGATGCCTTTCTCTTTGTGATGAGTTGCTGCCTTGTCCAAATATGTTTGTTGAGAAAAGTAACAGGAAGAGTCAAAGAGAAACAAGAAAAGATTTTGTGTTGTACTCCTACATGATCATTTAGTTATTAAATTTATAAATAAGTGTATATGATCGTCTTTTTTTTTTTTCGTCACTGAGTTTCAAGGAAACAAACATAAATCATAAAGTTACCATACAACATTGAGGTAACCACAATCTTCTCCGAAGGTGGCATCCCTCGTGATGGGAACAGTTTGATGATCATGGCTGGATATTGAATTCCATTCATTTTTACTCAACAAATCCATTAATATATCCTTTTTGTCTCCCAAGAAGTAATAATCTGGTCTAAGAAACTTTTTAACATAAATATTATCATTGTCTGATTTATAGTAGGAAACTTTACTGGTGATGATAGACTGAAGATTATGTCATTTATGTTGTAAATACTGACAATAAAAGAACATATGACATACAAGGTTGTACTATCTTAATAAGAGAATTATAGAATCAGAATCATAAGATGTCCCAGACTGGGACTGAAGAAGATTTTATCTCTGAGGAGCAAGTGCTCTGTCTCTAAAACTATATCCATCTCTTTCCTGTTTCTATCTATATAACATGGAATCATTTATGGGTAAGTCTACTTTTATGTCACAAAGTTGAACGGGTGTGACATGGGTATAGGTGCTTCATGCTGAGTTTTCAAATTAAATTACAATAAAAATTGACGTGAAAACAAATATGGATCCATGTAACATTAGGTGCAATTTTGGTCCAATGCATTAAGTTGGACCTAAATCTTCAAACGTGAAAGCATCAAGCTTTACTTTCTGATGTCATGCTGTGGTTTTCATTACTTGTTAGATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAGAAGCAGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAG</genome_strand>
        <mrna_strand>GCTGTTCATATGGCTTGTTTGCTCTGCCAGAGGGTTCAAGAAAATTTGTTATCTGAAACCTCTGAACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAAGCTAGCGCAGCTGGTCTGTTAGAAGCAACAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTCCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325011" ref_strand="+" ref_description="SGN-E325011 [cTOC-13-C9]">
      <seq>tgtcaccaacttttatgaagaatgatattttcctgaaaaaacaaatgttgggaactatttctttttcttccaagaaagattcttacttgggtttcactgcccaaactagtagtcaaacagattttgtgtctgcaatggatgaagattgtaaattggaattgaaatcgaattatatatcagatgggtattgtaaagaattggagattgctgtaagagctgttcatatggcttgtttgctctgccagagggttcaagaaaatttgttatctgaaacctctgaacatgttcattctaaggaggatgactctcctgtcacaattgctgattggagcgtccaagcaattgtcagctgggtactgtccgaggcttatggcagtaacgtctctattgttgctgaagaagatgtagaagctctttccaaggctagcgcagctggtctgttagaaaaggcccgtagtaagaactgtgaatgagtgtctagccgatgctcctcgttttggactgaaaggtcctgggactgatctggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="70546" stop="68084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70246" g_stop="69923" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69922" i_stop="68586" i_length="1337">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68585" g_stop="68384" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="530" r_length="206" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E325011" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70246" e_stop="69923"/>
          <exon e_start="68585" e_stop="68384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACCAACTTTTAGGAAGAATGATATTTTCCTGAAAAAACAAATGTTGGGAACTATTTCTTTTTCTTCCAAGAAAGATTCTTACTTGGGTTTCACTGCCCAAACTAGTAGTCAAACAGATTTTGTGTCTGCAATGGATGAAGATTGTAAATTGGAATTGAAATCGAATTATATATCAGATGGGTATTGTAAAGAATTGGAGATTGCTGTAAGAGCTGTTCATATGGCTTGTTTGCTCTGCCAGAGGGTTCAAGAAAATTTGTTATCTGAAACCTCTGAACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTGGTATGTCTTCTTGTTGTTCTATATATTGTGTTTTGGTGAATTGGGTTTTTGTAGGTGAATTGGGGAAGGAGAAAGATTGTGTCTTTTTGCTTTTTTGAGTATTCATTTTGGATATTGTTGATTAGATAGTATGGGTAGGAGTGTGTGGTTTGGGATCCTTATCTCGTGAGCTAGCTTTTAGGATTAAATTACATTATTTAATTTTATTTGGAGTTCTATGTAGTCCATGTTTTCTCCTGTGAAATGGAACATACTTTTTTGGTTTTCTGTAGTGCTATTGAAGTTGTGTGGGAGTTAAAGCATACTAACCTAATTAATCTTCGAGTGTATTTGTTTAAACTTTAAAGCTCACAATGTATAAAGACAACCTAATGCACTATGTACTGTTATGTTTTACGACTTGTAGACTTCTAAAAAAGCACAAAATAACAGTCATTCAAGCCAAGTCATTGATGCCTTTCTCTTTGTGATGAGTTGCTGCCTTGTCCAAATATGTTTGTTGAGAAAAGTAACAGGAAGAGTCAAAGAGAAACAAGAAAAGATTTTGTGTTGTACTCCTACATGATCATTTAGTTATTAAATTTATAAATAAGTGTATATGATCGTCTTTTTTTTTTTTCGTCACTGAGTTTCAAGGAAACAAACATAAATCATAAAGTTACCATACAACATTGAGGTAACCACAATCTTCTCCGAAGGTGGCATCCCTCGTGATGGGAACAGTTTGATGATCATGGCTGGATATTGAATTCCATTCATTTTTACTCAACAAATCCATTAATATATCCTTTTTGTCTCCCAAGAAGTAATAATCTGGTCTAAGAAACTTTTTAACATAAATATTATCATTGTCTGATTTATAGTAGGAAACTTTACTGGTGATGATAGACTGAAGATTATGTCATTTATGTTGTAAATACTGACAATAAAAGAACATATGACATACAAGGTTGTACTATCTTAATAAGAGAATTATAGAATCAGAATCATAAGATGTCCCAGACTGGGACTGAAGAAGATTTTATCTCTGAGGAGCAAGTGCTCTGTCTCTAAAACTATATCCATCTCTTTCCTGTTTCTATCTATATAACATGGAATCATTTATGGGTAAGTCTACTTTTATGTCACAAAGTTGAACGGGTGTGACATGGGTATAGGTGCTTCATGCTGAGTTTTCAAATTAAATTACAATAAAAATTGACGTGAAAACAAATATGGATCCATGTAACATTAGGTGCAATTTTGGTCCAATGCATTAAGTTGGACCTAAATCTTCAAACGTGAAAGCATCAAGCTTTACTTTCTGATGTCATGCTGTGGTTTTCATTACTTGTTAGATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAG--AA-G-CAGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGC</genome_strand>
        <mrna_strand>TGTCACCAACTTTTATGAAGAATGATATTTTCCTGAAAAAACAAATGTTGGGAACTATTTCTTTTTCTTCCAAGAAAGATTCTTACTTGGGTTTCACTGCCCAAACTAGTAGTCAAACAGATTTTGTGTCTGCAATGGATGAAGATTGTAAATTGGAATTGAAATCGAATTATATATCAGATGGGTATTGTAAAGAATTGGAGATTGCTGTAAGAGCTGTTCATATGGCTTGTTTGCTCTGCCAGAGGGTTCAAGAAAATTTGTTATCTGAAACCTCTGAACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAGAAAAGGCCCGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGGACTGATCTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235921" ref_strand="+" ref_description="SGN-E235921 [cLED-16-P15]">
      <seq>ttctctttctacaaagggattcactgctgttgaagatatcaacctggacaacatcaagtttaaggacaagtcgagagagaagcaaagaaagaaaaatttacaagtgaaaaaagctgcaatggcacaacaacaagaacagaagacacagagacttaaaaaagaagcaaactctacagcaagtgccttgagaaagagaactgccaaacaaagacgtgctacacagttggttgaagatgaagatgagatcacacgggagtaccggttattgaaaaagctaaaaaagggagctatcgatgagaatgagtttgcaaaattgactggcacagaagacttgctttctgacatatgatttaaacatctaggcacaaattctgctggtctaatgcattcatatgtggtggtgattgcagatgttacactagttaccaagcaaagaaagataagtatatgtctggtctggtcacccagaaactgaatttcatcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="76749" stop="75570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76449" g_stop="76387" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76294" g_stop="75870" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="488" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E235921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76449" e_stop="76387"/>
          <exon e_start="76294" e_stop="75870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGTAAGTTTATTCTCATAAGATTGGTCAGTAAATGTTAGATCTGTTGTGGGGTGTTGGCCTTTGATACTTAGCTATTACTTTTTTCCATTCAGGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTGGTGGTGATTGCAGATGTTACACTAGTTACCAAGCAAAGAAAGATAAGTATATGTCTGGTCTGGTCACCCAGAAACTGAATTTCATCAAGCA</genome_strand>
        <mrna_strand>TTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA............................................................................................GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTGGTGGTGATTGCAGATGTTACACTAGTTACCAAGCAAAGAAAGATAAGTATATGTCTGGTCTGGTCACCCAGAAACTGAATTTCATCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311372" ref_strand="+" ref_description="SGN-E311372 [cLEZ-18-D4]">
      <seq>gactaatgaattctgtctgttactgatgttcctttttttctagatacgatcagcagcaaagaaagatcgtgatgtaatggagaaaggactcagagcctttgtatcatacatccgtgcatataaagagcaccactgctcttacatcttaaggtggaaggagcttgagatcgggaagctgggcatgggatatggtcttctgcagcttccttctgtgcctgatgtgaaacatcattctctttctacaaagggattcactgctgttgaagatatcaacctggacaacatcaagtttaaggacaagtcgagagagaagcaaagaaagaaaaatttacaagtgaaaaaagctgcaatggcacaacaacaagaacagaagacacagagacttaaaaaagaagcaaactctacagcaagtgccttgagaaagagaactgccaaacaaagacgtgctacacagttggttgaagatgaagatgagatcacacgggagtaccggttattgaaaaagctaaaaaagggagctatcgatgagaatgagtttgcaaaattgactggcacagaagacttgctttctgacatatgatttaaacatctaggcacaaattctgctggtctaatgcattcatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="77057" stop="75661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76757" g_stop="76609" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76608" i_stop="76531" i_length="78">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76530" g_stop="76387" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="294" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76294" g_stop="75961" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="628" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E311372" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76757" e_stop="76609"/>
          <exon e_start="76530" e_stop="76387"/>
          <exon e_start="76294" e_stop="75961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAATGAATTCTGTCTGTTACTGATGTTCCTT-TTTTCTAGATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAGGTAAGTTAAGGCCATGGTGCAATACAAAAATTACAGTAGTTGCATTTCCACATCTTCAGCTTAGTCTTCTATTTACAGGTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGTAAGTTTATTCTCATAAGATTGGTCAGTAAATGTTAGATCTGTTGTGGGGTGTTGGCCTTTGATACTTAGCTATTACTTTTTTCCATTCAGGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTG</genome_strand>
        <mrna_strand>GACTAATGAATTCTGTCTGTTACTGATGTTCCTTTTTTTCTAGATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAG..............................................................................GTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA............................................................................................GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240621" ref_strand="+" ref_description="SGN-E240621 [cLED-21-B18]">
      <seq>ttctctttctacaaagggattcactgctgttgaagatatcaacctggacaacatcaagtttaaggacaagtcgagagagaagcaaagaaagaaaaatttacaagtgaaaaaagctgcaatggcacaacaacaagaacagaagacacagagacttaaaaaagaagcaaactctacagcaagtgccttgagaaagagaactgccaaacaaagacgtgctacacagttggttgaagatgaagatgagatcacacgggagtaccggttattgaaaaagctaaaaaagggagctatcgatgagaatgagtttgcaaaattgactggcacagaagacttgctttctgacatatgatttaaacatctaggcacaaattctgctggtctaatgcattcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="76749" stop="75662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76449" g_stop="76387" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76294" g_stop="75962" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="396" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E240621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76449" e_stop="76387"/>
          <exon e_start="76294" e_stop="75962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGTAAGTTTATTCTCATAAGATTGGTCAGTAAATGTTAGATCTGTTGTGGGGTGTTGGCCTTTGATACTTAGCTATTACTTTTTTCCATTCAGGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGT</genome_strand>
        <mrna_strand>TTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA............................................................................................GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353298" ref_strand="+" ref_description="SGN-E353298 [cTOS-15-C5]">
      <seq>tgaaaaaagctgcaatggcacaacaacaagaacagaagacacagagacttaaaaaagaagcaaactctacagcaagtgccttgagaaagagaactgccaaacaaagacgtgctacacagttggttgaagatgaagatgagatcacacgggagtaccggttattgaaaaagctaaaaaagggagctatcgatgagaatgagtttgcaaaattgactggcacagaagacttgctttctgacatatgatttaaacatctaaggcacaaattctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="76553" stop="75683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76253" g_stop="75983" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E353298" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76253" e_stop="75983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCT-AGGCACAAATTCTGC</genome_strand>
        <mrna_strand>TGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAAGGCACAAATTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276791" ref_strand="+" ref_description="SGN-E276791 [cLEN-14-O11]">
      <seq>agaaaggactcagagcctttgtatcatacatccgtgcatataaagagcaccactgctcttacatcttaaggtggaaggagcttgagatcgggaagctgggcatgggatatggtcttctgcagcttccttctgtgcctgatgtgaaacatcattctctttctacaaagggattcactgctgttgaagatatcaacctggacaacatcaagtttaaggacaagtcgagagagaagcaaagaaagaaaaatttacaagtgaaaaaagctgcaatggcncaacaacaagaacagaagacacagagacttaaaaaagaagcaaactctacagcaagtgccttgagaaagagaactgccaaacaaagacgtgctacacagttggttgaagatgaagatgagatcacacgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="76978" stop="75802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76678" g_stop="76609" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76608" i_stop="76531" i_length="78">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76530" g_stop="76387" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="214" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76294" g_stop="76102" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="407" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E276791" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76678" e_stop="76609"/>
          <exon e_start="76530" e_stop="76387"/>
          <exon e_start="76294" e_stop="76102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAGGTAAGTTAAGGCCATGGTGCAATACAAAAATTACAGTAGTTGCATTTCCACATCTTCAGCTTAGTCTTCTATTTACAGGTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGTAAGTTTATTCTCATAAGATTGGTCAGTAAATGTTAGATCTGTTGTGGGGTGTTGGCCTTTGATACTTAGCTATTACTTTTTTCCATTCAGGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAG</genome_strand>
        <mrna_strand>AGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAG..............................................................................GTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA............................................................................................GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCNCAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424986" ref_strand="-" ref_description="SGN-E424986 [STM-44-K16]">
      <seq>gaggcagtttggatatagtctctagcagggttactccaaacttacttattaactatgatatgtcttggtctttttaggaggaagcatatgtggagttcttgcgtataaaagacgttttcttagaagagggggaatgtgcctctgatgctcctgatattatagatgaaatacggtcagcagcaaagaaagatcgtgatgtaatggagaaaggactcagagcctttgtatcatacatccgtgcatataaagagcaccactgctcttacattttaaggtggaaggagcttgagattgggaagctgggcatgggatatggtcttttgcaacttccttctgtgcctgatgtgaagcatcattctctttctacaaagggattcactgctgttgaagatatcaacctggacgagatcaagtttaaggacaaatccagggagaagcaaagaaagaagaatttacaagtgaaaaaagctgcaatggcacaacaacaagaacagaagagaaagagacttaaaaaagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="78035" stop="75892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77736" g_stop="77570" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77569" i_stop="76716" i_length="854">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76715" g_stop="76609" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="274" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76608" i_stop="76531" i_length="78">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76530" g_stop="76387" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="418" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76294" g_stop="76192" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="521" r_length="103" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E424986" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424986" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77736" e_stop="77570"/>
          <exon e_start="76715" e_stop="76609"/>
          <exon e_start="76530" e_stop="76387"/>
          <exon e_start="76294" e_stop="76192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTGTTTGGATATAGTCTCTATCAGGGTTACTCCAAACTTACTTATTAACTATGATATGTCTTGGTCTTTTTAGGAGGAAGCATATGTGGAGTTCTTGCGTATAAAAGACGTTTTCTTAGAAGAGGGAGAATGTGCCTCTGATGCTCCTGATATTATAGATGAAGTAAGAATTACATTATGCCATGTTTCTCTTTCCCCTTGCTTTGTAGTGCGAATGCTTTTATTCCTCTAGTTTTAGTTCCTTCTTTTTAATTGAGAAAAGGGCATGTATTATAAATGCAACACGAATTGCGCTTGACTATTTACAAAAAGATCCAACTTCACATCATATCAGCATGGATTGAAGTGTGTGTAACAGAGATTCTGCATCATTAATTGAACCCTCTTTACACACCAAAAAGGAACAAAAGTATACAGTTCTTTGCTTTTATATTCTGTATAGAACTAGCTGTATCTTCAAAGCATCTTGCATTTCTCTCTTTCCAAACAGTCCACCTATATAGTAGCTGGGATAGTTCTCTGCCATTTGTGTTGTTCTTTTGACAAGTCCCTTCTATACTAGCTTCTTGTCAAATCAATTGTATCTTCAGGCGTTGTCCATTGCAATCCCAGCATATTCATAAATAATGCCAAAGTTGTGAAACAATGGGACAGTACAAAAATAAATTGGTTGATGGTTTCTGAATTCTTTCCACAAAGATGGCACCTGTTACAGAGTTGAGAACCTCTTTTCTGAAGGTTGTCTGAGCATGCTTTTCTTGTAACTAGTGACACAAAACAAGTCACTTTCCGTGTTGACTTTGATCTTCATATGTTCCTCCAAGGCCATGATCCTCATCAATTAAAAAATTGTAACTAGATATAATATAATGAGATCCAGAATTGTGTAGTCCCCCCCCCCCCCTCCCCCCCTCCCCCCCTCCCAAAGAAAAAATCTTGTCCTTGGTGTTCAGAGAGGTTGAAGAGGCTGCAGTTGACTAATGAATTCTGTCTGTTACTGATGTTCCTTTTTTCTAGATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAGGTAAGTTAAGGCCATGGTGCAATACAAAAATTACAGTAGTTGCATTTCCACATCTTCAGCTTAGTCTTCTATTTACAGGTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGTAAGTTTATTCTCATAAGATTGGTCAGTAAATGTTAGATCTGTTGTGGGGTGTTGGCCTTTGATACTTAGCTATTACTTTTTTCCATTCAGGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCA</genome_strand>
        <mrna_strand>GAGGCAGTTTGGATATAGTCTCTAGCAGGGTTACTCCAAACTTACTTATTAACTATGATATGTCTTGGTCTTTTTAGGAGGAAGCATATGTGGAGTTCTTGCGTATAAAAGACGTTTTCTTAGAAGAGGGGGAATGTGCCTCTGATGCTCCTGATATTATAGATGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGTCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATTTTAAG..............................................................................GTGGAAGGAGCTTGAGATTGGGAAGCTGGGCATGGGATATGGTCTTTTGCAACTTCCTTCTGTGCCTGATGTGAAGCATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACGAGATCAAGTTTAA............................................................................................GGACAAATCCAGGGAGAAGCAAAGAAAGAAGAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGAGAAAGAGACTTAAAAAAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242705" ref_strand="+" ref_description="SGN-E242705 [cLED-31-A13]">
      <seq>tggccttcatattgagtatttggaatgtgaagcggacaagaaatcatcgcagcttgtacacctcataacaaagaacaagtcaaaaaaaattatagtgtgagcttactttcctggaatcttgaattgtatatcatatatttttacatacctgcatagatggtaggagatcacgttggtgtttagtacttggtattttttactcctgcagttatttcatgacttgtgcttgtgttgattattggggaactgttcttccacgtctctcttgtctgaaaagtttttcattgatctctcttcatggaaggatgaagcatagtgcaagggagaaagcactagcatcatttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="79350" stop="78284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79149" g_stop="79134" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79133" i_stop="79036" i_length="98">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79035" g_stop="78738" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="314" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78737" i_stop="78618" i_length="120">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.875" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78617" g_stop="78584" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="348" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E242705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79149" e_stop="79134"/>
          <exon e_start="79035" e_stop="78738"/>
          <exon e_start="78617" e_stop="78584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTTCATATTGAGGTATGCTCCCACTGTTTCACAGTGTTTGTTTGTTTCTAAAGAATTTATTTATATCAAGGAATAGGTTACCATATTCTAATGTCCCTTCAATTTGGCAGTATTTGGAATGTGAAGCGGACAAGAAATCATCGCAGCTTGTACACCTCATAACAAAGAACAAGTCAAAAAAAATTATAGTGTGAGCTTACTTTCCTGGAATCTTGAATTGTATATCATATATTTTTACATACCTGCATAGATGGTAGGAGATCACGTTGGTGTTTAGTACTTGGTATTTTTTACTCCTGCAGTTATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAACTGTTCTTCCACGTCTCTCTTGTCTGAAAAGTTTTTCATTGATCTCTCTTCATGGAAGGATGAAGCAGGTACATTTATTGACGTCTTAATAATAAAGGTCTATTATTTTATGAAATTGTTAATTAAGGCCTATTATTTAAAGAAGGTTCTATAGCAGCTCAGGAAATTAACTCTCTTATATTTTGTAGAGTGCAAGGGAGAAAGCACTAGCATCATTTACAT</genome_strand>
        <mrna_strand>TGGCCTTCATATTGAG..................................................................................................TATTTGGAATGTGAAGCGGACAAGAAATCATCGCAGCTTGTACACCTCATAACAAAGAACAAGTCAAAAAAAATTATAGTGTGAGCTTACTTTCCTGGAATCTTGAATTGTATATCATATATTTTTACATACCTGCATAGATGGTAGGAGATCACGTTGGTGTTTAGTACTTGGTATTTTTTACTCCTGCAGTTATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAACTGTTCTTCCACGTCTCTCTTGTCTGAAAAGTTTTTCATTGATCTCTCTTCATGGAAGGATGAAGCAT........................................................................................................................AGTGCAAGGGAGAAAGCACTAGCATCATTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453624" ref_strand="+" ref_description="SGN-E453624 [cSTS-20-J11]">
      <seq>cgggcatggcgtcggcgaatcagaacaaagctttaacgaatactcgtttctccgacctcgaaccgcggctggctgagccagttttggaagccctaaccaactccggcttcgagttctgtactcctgttcaggccgccaccatacccttactctgcagctacaaggatgtcaccgtcgacgccgccactggctctggtaaaaccctagcctttgttttacctgtggttgagatcatccgtcgctcctcttccaatcccaaacctcacaaggtaatgggtataattgtatcacccaccagggaattgtcgtcacaaatatttcatgttgctcagccattcatttccacattagcaaatgttagacctatgcttcttgttggaggattagaagtaaaggcagatatcaaaaagatagaggaggaaggagcaaatttgttgattgggacacctgggaggctatatgacataatggagcgcatggatatactggactttcgggatcttgagatcctgatattagatgaggctgataggctattaggcatgggattcgagaagcagctaaattcaatcatttctcgtttacctaagcttcgtagaacgggtctcttctctgctactcaaactgaagcagttgaagaactatcaaaggcangattgagaaatcctgtcaggnttgaagttcgggcagaagcaaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="81817" stop="78897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81517" g_stop="81249" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81248" i_stop="80284" i_length="965">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80283" g_stop="80047" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="506" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80046" i_stop="79392" i_length="655">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79391" g_stop="79197" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="701" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E453624" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81517" e_stop="81249"/>
          <exon e_start="80283" e_stop="80047"/>
          <exon e_start="79391" e_stop="79197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCACGGCTTGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTTGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTCGTTTTACCTGTGGTTGAGATCATCCGTCGATCCTCTTCTAATCCCAAACCTCACAAGGTAATAAGGTTCCTCCTTCTGCTTTACGAGACCTGTTTAGGCTTTTACTTATGTAAAGTATGAAAGCATTTGCGCCGGCACCAGTGTTTAGATTTGTTAGGTAGGAAAATTTGGGGCTTTGCTGTAACATATTGATTACATACAGAGAACCCCGGAGCTAAAATTGATATAGCTTATAATGAATATAGTATTCCCAATTTGAGGTATGTGAGCTAAATATGATTAAGATGCTTGAGTACTAGTATTTTAAGTATTAACCGGCCTGTCATGAAGGATTTTGATATAAGCTAGAAACAGATGCAGTTGCGCTCATTTGTACCAAGTCAAGTTTCATAGTAGTTCTAGAGGACATTCAAATTTGACTATAGAATGGTACTTATACAAATACATATGCTTGTGGGAAACAATGGCACTGTCATCCACTTCACTTGTTTTGGAAGTGGACTCTGCTGATTGACTTTGTAAAAAATGAGTCACTTGGTTATTGGTATTTTTGAAGACATTGATTTTGCTGGTTAATATTGTCAAGTTGGATCATTTATGGTGTTTCTGGTTTGGAATATTTCCAACTTAAGGGATCTTCGGTGTACCAGTTTGAACTTGATTCAGCAGTAGTTGCCAGTTGGGAGGTACTGTAAGATTATAAAGACCGGAGGTTGCTCTCTGGTGCTTCAATTGTTGTCTCGTTATTGTTTGCCAGTGTTGCTGTCAACCCTAGAAATAGTTACAATAGATAAATAAAGCCGTGGCCGTACATTACAAACAAAAGGCACTGACTCATCTGTGCCGCACATGTTATACTCTGTAAAATTTGATCTTCCATGCTTAAGGCATTATGTTCTATCCAAATAGACCCATTTGACAACCAATAAAGATCCTTGTGATATACTTCCCTTTCTGTTTTTTTCCTTTAATTCTACTTTGTCCTCTTTTTGTGTTTAGCTGTCTCTTTGATGCCTTTGCAGGTAATGGGTATAATTATATCACCAACCAGGGAGTTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGGCCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCCTGGATATACTGGACTTTCGGGATCTTGAGGTGCTACTTTATGCCTCCTTCAGTGGTGCTCAAGTGCTATAGTGATTTTTAAGCTGTTAATTATTTGTTTACTATTAAAGAAAGCTAACTTGGTAATTTAGGAGTATCAAATTCTTTTGCTCGGTGCTGCAGTATGTCTTTAGCTGCTAACCATTTGTTTACTCTTAAAGATTAAGTTTGCTTGGGATTTAGAGTGTCAAATCTTTTACTTGATAGATGATAATCTATGTTTTGCATATGATACTTTAAAAAGGAAAAATGAAGTTGCCATATGCCCTGTGTTTAAACCATTTAGCTGCATATAAAGCTTTCCATTTGTGCACTTAAGTAATGCTAAATTCAGCCTTACCCCAGAAGGAGTTAAGTTTTACCTCCTAGATCATACGTTCATACTCAAGGCTGACTTTCATGATTGCCTATAATCACATTCTGACTTAAGTGGTCTCTGATTTCCTACATTTAAAAAGAAAAATTAGTCTCTGATTTCCTACATGTTCTTACAGCAGTCAATTGGCTGTCAATAAATAGAACAATGGGCTTCGAGTTCACCCCCTTTCCTCAACCTTCTTTTGTCCATGTGTGTTCAGGATTTGGTAGTGATATATGAAATACTACATCTCAATTAGCCACTCAGAAAAAACCATCTCATTTGCAGATCCTGATATTAGACGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAAAGGCAGGATTGCGAAATCCTGTCAGGGTTGAAGTTCGGGCAGAAGCAAAACAG</genome_strand>
        <mrna_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCGCGGCTGGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTCGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTTGTTTTACCTGTGGTTGAGATCATCCGTCGCTCCTCTTCCAATCCCAAACCTCACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGGTATAATTGTATCACCCACCAGGGAATTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGACCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCATGGATATACTGGACTTTCGGGATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATATTAGATGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAAAGGCANGATTGAGAAATCCTGTCAGGNTTGAAGTTCGGGCAGAAGCAAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455880" ref_strand="+" ref_description="SGN-E455880 [cSTS-27-J14]">
      <seq>cgggcatggcgtcggcgaatcagaacaaagctttaacgaatactcgtttctccgacctcgaaccgcggctggctgagccagttttggaagccctaaccaactccggcttcgagttctgtactcctgttcaggccgccaccatacccttactctgcagctacaaggatgtcaccgtcgacgccgccactggctctggtaaaaccctagcctttgttttacctgtggttgagatcatccgtcgctcctcttccaatcccaaacctcacaaggtaatgggtataattgtatcacccaccagggaattgtcgtcacaaatatttcatgttgctcagccattcatttccacattagcaaatgttagacctatgcttcttgttggaggattagaagtaaaggcagatatcaaaaagatagaggaggaaggagcaaatttgttgattgggacacctgngaggctatatgacataatggagcgcatggatatactggactttcgggatcttgagatcctgatattagatgaggctgataggctattaggcatgggattcgagaagcagctaaattcaatcatttctcgtttacctaagcttcgtagaacgggtctcttctctgctactcaaactgaagcagttgaagaactatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="81817" stop="78950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81517" g_stop="81249" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81248" i_stop="80284" i_length="965">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80283" g_stop="80047" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="506" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80046" i_stop="79392" i_length="655">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79391" g_stop="79250" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="648" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E455880" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81517" e_stop="81249"/>
          <exon e_start="80283" e_stop="80047"/>
          <exon e_start="79391" e_stop="79250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCACGGCTTGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTTGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTCGTTTTACCTGTGGTTGAGATCATCCGTCGATCCTCTTCTAATCCCAAACCTCACAAGGTAATAAGGTTCCTCCTTCTGCTTTACGAGACCTGTTTAGGCTTTTACTTATGTAAAGTATGAAAGCATTTGCGCCGGCACCAGTGTTTAGATTTGTTAGGTAGGAAAATTTGGGGCTTTGCTGTAACATATTGATTACATACAGAGAACCCCGGAGCTAAAATTGATATAGCTTATAATGAATATAGTATTCCCAATTTGAGGTATGTGAGCTAAATATGATTAAGATGCTTGAGTACTAGTATTTTAAGTATTAACCGGCCTGTCATGAAGGATTTTGATATAAGCTAGAAACAGATGCAGTTGCGCTCATTTGTACCAAGTCAAGTTTCATAGTAGTTCTAGAGGACATTCAAATTTGACTATAGAATGGTACTTATACAAATACATATGCTTGTGGGAAACAATGGCACTGTCATCCACTTCACTTGTTTTGGAAGTGGACTCTGCTGATTGACTTTGTAAAAAATGAGTCACTTGGTTATTGGTATTTTTGAAGACATTGATTTTGCTGGTTAATATTGTCAAGTTGGATCATTTATGGTGTTTCTGGTTTGGAATATTTCCAACTTAAGGGATCTTCGGTGTACCAGTTTGAACTTGATTCAGCAGTAGTTGCCAGTTGGGAGGTACTGTAAGATTATAAAGACCGGAGGTTGCTCTCTGGTGCTTCAATTGTTGTCTCGTTATTGTTTGCCAGTGTTGCTGTCAACCCTAGAAATAGTTACAATAGATAAATAAAGCCGTGGCCGTACATTACAAACAAAAGGCACTGACTCATCTGTGCCGCACATGTTATACTCTGTAAAATTTGATCTTCCATGCTTAAGGCATTATGTTCTATCCAAATAGACCCATTTGACAACCAATAAAGATCCTTGTGATATACTTCCCTTTCTGTTTTTTTCCTTTAATTCTACTTTGTCCTCTTTTTGTGTTTAGCTGTCTCTTTGATGCCTTTGCAGGTAATGGGTATAATTATATCACCAACCAGGGAGTTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGGCCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCCTGGATATACTGGACTTTCGGGATCTTGAGGTGCTACTTTATGCCTCCTTCAGTGGTGCTCAAGTGCTATAGTGATTTTTAAGCTGTTAATTATTTGTTTACTATTAAAGAAAGCTAACTTGGTAATTTAGGAGTATCAAATTCTTTTGCTCGGTGCTGCAGTATGTCTTTAGCTGCTAACCATTTGTTTACTCTTAAAGATTAAGTTTGCTTGGGATTTAGAGTGTCAAATCTTTTACTTGATAGATGATAATCTATGTTTTGCATATGATACTTTAAAAAGGAAAAATGAAGTTGCCATATGCCCTGTGTTTAAACCATTTAGCTGCATATAAAGCTTTCCATTTGTGCACTTAAGTAATGCTAAATTCAGCCTTACCCCAGAAGGAGTTAAGTTTTACCTCCTAGATCATACGTTCATACTCAAGGCTGACTTTCATGATTGCCTATAATCACATTCTGACTTAAGTGGTCTCTGATTTCCTACATTTAAAAAGAAAAATTAGTCTCTGATTTCCTACATGTTCTTACAGCAGTCAATTGGCTGTCAATAAATAGAACAATGGGCTTCGAGTTCACCCCCTTTCCTCAACCTTCTTTTGTCCATGTGTGTTCAGGATTTGGTAGTGATATATGAAATACTACATCTCAATTAGCCACTCAGAAAAAACCATCTCATTTGCAGATCCTGATATTAGACGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAA</genome_strand>
        <mrna_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCGCGGCTGGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTCGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTTGTTTTACCTGTGGTTGAGATCATCCGTCGCTCCTCTTCCAATCCCAAACCTCACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGGTATAATTGTATCACCCACCAGGGAATTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGACCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGNGAGGCTATATGACATAATGGAGCGCATGGATATACTGGACTTTCGGGATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATATTAGATGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424985" ref_strand="+" ref_description="SGN-E424985 [STM-44-K16]">
      <seq>cgggcatggcgtcggcgaatcagaacaaagctttaacgaatactcgtttctccgacctcgaaccgcggctggctgagccagttttggaagccctaaccaactccggcttcgagttctgtactcctgttcaggccgccaccatacccttactctgcagctacaaggatgtcaccgtcgacgccgccactggctctggtaaaaccctagcctttgttttacctgtggttgagatcatccgtcgctcctcttccaatcccaaacctcacaaggtaatgggtataattgtatcacccaccagggaattgtcgtcacaaatatttcatgttgctcagccattcatttccacattagcaaatgttagacctatgcttcttgttggaggattagaagtaaaggcagatatcaaaaagatagaggaggaaggagcaaatttgttgattgggacacctgggaggctatatgacataatggagcgcatggatatactggactttcgggatcttgagatcctgatattagatgaggctgataggctattaggcatgggattcgagaagcagctaaattcaatcatttctcgtttacctaagcttcgtagaacgggtctcttctctgctactcaaactgaagcagntgaagaactatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="81817" stop="78951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81517" g_stop="81249" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81248" i_stop="80284" i_length="965">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80283" g_stop="80047" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="506" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80046" i_stop="79392" i_length="655">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.767" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79391" g_stop="79251" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="647" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E424985" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81517" e_stop="81249"/>
          <exon e_start="80283" e_stop="80047"/>
          <exon e_start="79391" e_stop="79251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCACGGCTTGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTTGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTCGTTTTACCTGTGGTTGAGATCATCCGTCGATCCTCTTCTAATCCCAAACCTCACAAGGTAATAAGGTTCCTCCTTCTGCTTTACGAGACCTGTTTAGGCTTTTACTTATGTAAAGTATGAAAGCATTTGCGCCGGCACCAGTGTTTAGATTTGTTAGGTAGGAAAATTTGGGGCTTTGCTGTAACATATTGATTACATACAGAGAACCCCGGAGCTAAAATTGATATAGCTTATAATGAATATAGTATTCCCAATTTGAGGTATGTGAGCTAAATATGATTAAGATGCTTGAGTACTAGTATTTTAAGTATTAACCGGCCTGTCATGAAGGATTTTGATATAAGCTAGAAACAGATGCAGTTGCGCTCATTTGTACCAAGTCAAGTTTCATAGTAGTTCTAGAGGACATTCAAATTTGACTATAGAATGGTACTTATACAAATACATATGCTTGTGGGAAACAATGGCACTGTCATCCACTTCACTTGTTTTGGAAGTGGACTCTGCTGATTGACTTTGTAAAAAATGAGTCACTTGGTTATTGGTATTTTTGAAGACATTGATTTTGCTGGTTAATATTGTCAAGTTGGATCATTTATGGTGTTTCTGGTTTGGAATATTTCCAACTTAAGGGATCTTCGGTGTACCAGTTTGAACTTGATTCAGCAGTAGTTGCCAGTTGGGAGGTACTGTAAGATTATAAAGACCGGAGGTTGCTCTCTGGTGCTTCAATTGTTGTCTCGTTATTGTTTGCCAGTGTTGCTGTCAACCCTAGAAATAGTTACAATAGATAAATAAAGCCGTGGCCGTACATTACAAACAAAAGGCACTGACTCATCTGTGCCGCACATGTTATACTCTGTAAAATTTGATCTTCCATGCTTAAGGCATTATGTTCTATCCAAATAGACCCATTTGACAACCAATAAAGATCCTTGTGATATACTTCCCTTTCTGTTTTTTTCCTTTAATTCTACTTTGTCCTCTTTTTGTGTTTAGCTGTCTCTTTGATGCCTTTGCAGGTAATGGGTATAATTATATCACCAACCAGGGAGTTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGGCCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCCTGGATATACTGGACTTTCGGGATCTTGAGGTGCTACTTTATGCCTCCTTCAGTGGTGCTCAAGTGCTATAGTGATTTTTAAGCTGTTAATTATTTGTTTACTATTAAAGAAAGCTAACTTGGTAATTTAGGAGTATCAAATTCTTTTGCTCGGTGCTGCAGTATGTCTTTAGCTGCTAACCATTTGTTTACTCTTAAAGATTAAGTTTGCTTGGGATTTAGAGTGTCAAATCTTTTACTTGATAGATGATAATCTATGTTTTGCATATGATACTTTAAAAAGGAAAAATGAAGTTGCCATATGCCCTGTGTTTAAACCATTTAGCTGCATATAAAGCTTTCCATTTGTGCACTTAAGTAATGCTAAATTCAGCCTTACCCCAGAAGGAGTTAAGTTTTACCTCCTAGATCATACGTTCATACTCAAGGCTGACTTTCATGATTGCCTATAATCACATTCTGACTTAAGTGGTCTCTGATTTCCTACATTTAAAAAGAAAAATTAGTCTCTGATTTCCTACATGTTCTTACAGCAGTCAATTGGCTGTCAATAAATAGAACAATGGGCTTCGAGTTCACCCCCTTTCCTCAACCTTCTTTTGTCCATGTGTGTTCAGGATTTGGTAGTGATATATGAAATACTACATCTCAATTAGCCACTCAGAAAAAACCATCTCATTTGCAGATCCTGATATTAGACGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCA</genome_strand>
        <mrna_strand>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCGCGGCTGGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTCGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTTGTTTTACCTGTGGTTGAGATCATCCGTCGCTCCTCTTCCAATCCCAAACCTCACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGGTATAATTGTATCACCCACCAGGGAATTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGACCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCATGGATATACTGGACTTTCGGGATCTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGATATTAGATGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGNTGAAGAACTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215910" ref_strand="+" ref_description="SGN-E215910 [cLEL-15-H18](-)">
      <seq>caggagtacagaactcgaagccggagttggttagggcttccaaaactggctcagcaagccgtggttcgaggtcggagaaacgagtattcgttaaagctttgttctgattcgccgacgccatgcccgccgcactcgctagtttttcttcaacccaactgtgctagtaattacaaccgaccgagtcgaataagaaccgatttacaaagtttttccggtccggtttggctgctacccggtttactcttgtatattaaaaataatttctactttcccatcaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="81092" stop="81975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81392" g_stop="81675" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="296"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E215910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81392" e_stop="81675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGTACAGAACTCGAAGCCGGAGTTGGTTAGGGCTTCCAAAACTGGCTCAGCAAGCCGTGGTTCGAGGTCGGAGAAACGAGTATTCGTTAAAGCTTTGTTCTGATTCGCCGACGCCATGCCCGCCGCACTCGCTAGTTTTTCTTCAACCCAACTGTGCTAGTAATTACAACCGACCGAGTCGAATAAGAACCGATTTACAAAGTTTTTCCGGTCCGGTTTGGCTGCTACCCGGTTTACTCTTGTATATTAAAAATAATTTCTACTTTCCCATCAACAAAAA</genome_strand>
        <mrna_strand>CAGGAGTACAGAACTCGAAGCCGGAGTTGGTTAGGGCTTCCAAAACTGGCTCAGCAAGCCGTGGTTCGAGGTCGGAGAAACGAGTATTCGTTAAAGCTTTGTTCTGATTCGCCGACGCCATGCCCGCCGCACTCGCTAGTTTTTCTTCAACCCAACTGTGCTAGTAATTACAACCGACCGAGTCGAATAAGAACCGATTTACAAAGTTTTTCCGGTCCGGTTTGGCTGCTACCCGGTTTACTCTTGTATATTAAAAATAATTTCTACTTTCCCATCAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244538" ref_strand="+" ref_description="SGN-E244538 [cLED-38-C18]">
      <seq>gcatctcccttgagttcgccgatggagacggagtgtatcagttttggtaaatttagatagttttgaagggtattatagtccttgtaggaagctcaaatctttcttgtgtacaactttttcttaattttacaagttccgtctgtacatactaattttagttgttaggtccattgtcgtgtatatactttgggagtcaattttcatttattcgagaactaggcgttgatcatgtcatattatatcactatataatattatgaaatgaaattagtatttgtgtaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="84403" stop="85283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84703" g_stop="84990" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E244538" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84703" e_stop="84990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCTCCCTTGAGTTCGCCGATGGAGACGGAGTGTATCAGTTTTGGTAAATTTAGATAGTTTTGAAGGGTATTATAGTCCTTGTAGGAAGCTCAAATCTTTCTTGTGTACAACTTTTTCTTAATTTTACAAGTTCCGTCTGTACATACTAATTTTAGTTGTTAGGTCCATTGTCGTGTATATACTTTGGGAGTCAATTTTCATTTATTCGAGAACTAGGCGTTGATCATGTCATATTATATCACTATATAATATTATGAAATGAAATTAGTATTTGTATACGCGATT</genome_strand>
        <mrna_strand>GCATCTCCCTTGAGTTCGCCGATGGAGACGGAGTGTATCAGTTTTGGTAAATTTAGATAGTTTTGAAGGGTATTATAGTCCTTGTAGGAAGCTCAAATCTTTCTTGTGTACAACTTTTTCTTAATTTTACAAGTTCCGTCTGTACATACTAATTTTAGTTGTTAGGTCCATTGTCGTGTATATACTTTGGGAGTCAATTTTCATTTATTCGAGAACTAGGCGTTGATCATGTCATATTATATCACTATATAATATTATGAAATGAAATTAGTATTTGTGTAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746803" ref_strand="+" ref_description="SGN-E746803 [GI|47104479]">
      <seq>ttgtatttgtgatttctccataccctttttgttttacattagaaaaaaaaaatgcatcagattttgaccaatattttcttgctgatcaaggttttgtctatataaaattaaagagggtcttttttttgaagtgtaaaagtaatactgttgactcctaatatcctggaaaatttcttatggggtttcatcttcttctttaaattcctaaagtgtcattcttaaacattgcataccatctatagtccaaacagtaattgccttaataaaaaatttcaacagtatcagcttcggtaaggggtactctgaaaatggcattggtaagggctgcaaggagtagctttaggcgttctggaggtgcaatcggaaactatgcaagtgagagaaatatattctgtgaaggcatatcaccatttagacatcctgcgccagtttttgaaaaagctgtaacaggtttcaattcatcatacattccaagtacccagatgataaatcaattaagtttcgggaacagaggaatgaagtttacccctcaatatcagtttccacatgcagcagctgagacggttgggggtgctgattcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacggttggcgatcgtggagtctctcatgagcattacagatttaaggttgcatatgacaagcttgtcattgcttctggagctgaacctttgacctttggcataaagggagtggaggaacatgccttctttctccgtgaagtacagaatgcccaagaaatcaggaagaagcttcttatgaacttgatggtctcagaaactccaggcatctcggaagaagagaaagagcgcttgttgcactgtgttgtgattggaggtggacctacaggggttgaattcagcggggagctaagtgattttattatgagagatgtacgcgaacgttatgctcatgtcaaaaactacattcatgtgaccctcattgaggctaatgagattttgtcttcatttgatgttgggttgcgggagtatgcgacaaagcatttgaccaaggtaatgaatccttcaattgctttgcatcaagaaagaagtttcttcagtttctgtgagcaaaatttcatacatatcaggttggtgtccgccttgttcatggtgttgtaaaagaagtacatccagataaaatagttctcagtgatggaagtgatgttccatatggccttctcgtttggtctactggagttggtccttccaattttgttaaatcactaaatgttcccaagtctcctggtggaaggattggaattgatgaatggttgcgagttccttccgtagaagatgtgtttgctataggagattgtgctggttttcttgaacagactggaaagccggtgcttccggctcttgctcaggttgctgaaaggcaagggaagtatcttgttaaattgttcaccgacattgggaaacagaatggaggcaaagctctctcagccaaagacatcactctaggagatccatttgtttacaagcatcttggaagcatggcaactgtggggcgttacaaggctcttgttgatctccgtcaagctaagggtgagaagggtgtctcattagcaggcttcacgagctggcttatttggcggtccgcgtatctgactcgagttatcagctggaggaacaggttttacgtggctatgaactggggaacaacgttaatctttggcagagacaatactaagataggataaactaccacttctagtaggattttcatgttcttgatccattttttgaacacttctaataacctaccttgtagtgttatcaataatgttaatatctttgaggattgaaaaagaaaagggggaaaaagtgctttgtcaaaatggaattatgagggttggggcaagggatctttgacgacgttagagttataatgttacatcatttcaaaacgttattaaatattatgtcacatattatttttgttaagtattcataacaatatttcaaagaacatggaacattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="91694" stop="86086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91394" g_stop="91185" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89748" g_stop="89063" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="896" r_length="686" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88764" g_stop="88551" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="1110" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88550" i_stop="88407" i_length="144">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88406" g_stop="88246" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1271" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88245" i_stop="88149" i_length="97">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88148" g_stop="87842" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1272" r_stop="1578" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87841" i_stop="87748" i_length="94">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87747" g_stop="87633" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1579" r_stop="1693" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87187" g_stop="87008" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1694" r_stop="1873" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87007" i_stop="86825" i_length="183">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86824" g_stop="86389" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1874" r_stop="2309" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2310" polyA_stop="2324"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E746803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2309</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91394" e_stop="91185"/>
          <exon e_start="89748" e_stop="89063"/>
          <exon e_start="88764" e_stop="88551"/>
          <exon e_start="88406" e_stop="88246"/>
          <exon e_start="88148" e_stop="87842"/>
          <exon e_start="87747" e_stop="87633"/>
          <exon e_start="87187" e_stop="87008"/>
          <exon e_start="86824" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAGGTAATTCCTTTTTTTCTTGTTCTGATTTCTTGAGGCTTTTCTAATGTATATATACATATATTATGCTGGATCTTGATTGTACCATGTACAGTTTCATCATTATTGAAACTTATGTTGTGACCTTATGAGTATGTAATTAATCATGTGCAAGTTTTTACTGCTATTTTTGAGTATGATGTTATATATTGAACACATAGGTGTTCTTGATCTAAGGGTGGATCCAGGATTCAATTGAACCCATAAACTATTTCTGTTACTAGGTTAAAAAAATTAATATTTTGACATATTAAGCTCAATACTGTTAATCCGCTCCTCTCTTGATCTATTTTGGCATAAGCTAACTCAATCCGAGATATAGCTCACGAGGGAAGGATTGTCCAAGATATCTAAGTTAAAGATGTTTGTTTTTCTTCTTGTCCATTTTGGTTGTAGAAATTCGAATGTCAAATTATGTGTAGCAGATTTTGGTAGGCTGATGTTTACAATCGTTTTTAATTCCGTAATGCTGTCATTGGTTTCTTCGACTGATTCTTTTTGGTGTACCTCTTGATTTTGCTTCTAGTTTTTACTTTTGATGGTTCAAGCTAATATATTTGTAGAATTAGATATTTTCTTGTATAGAAGATTGAACCTTTTAGTTGCTAACTAATCATATAACTTAATATGGATTGCTTGCATTGATGGCGATCACATTTCTTCCATTGCTAGACGTGTGTTCTGCCATTCCAAATTTGAACTTAAGTATGTCGTGTTCAGAAATTTAATCCAACGAACTTTTGCTGATTGTTAGTAACCTTGTGTCAACAAATAGTTTGTTTTAAGATTTGAAGCAATGAAATGCATAACCTATAATGTTATTGGAGTTTTATATGTACCATCAAGTTGTTGTGCAATGATATCATCATCTTGACAGAGGTTTGGATTTCATACACAGACTGACTAGAGAGAATTCAAATGCGAAATTCATATCTGGTATGTATTAGCAAAGCCTGAGCAAATAAACTTCAAATTGAAATTGGCATAGTAAGTATGGTTGCACTCTTCATTTTCTTGACCAGATTCTTGTAAAATCTGCTACCAATTTTGGAATTTGGCACTAACTGGTCATATTTGTCTAGAGTACTGAGATTGTAGTGAGTGTATGCAAGATCATGGTGTATTGTGAATCCAGGTGTTTTATATCTGCATCCATACTAAGAATTTTGCGAGAACACTTCACACTGAAACTGCCACAGTGTAGAAATGCAAATTTTGTCTTTCCTGTTTCTGCTAGTTGGTTTAGGAACCATCTTTGTCTTGCTTTTGTCTTGTCCTTGACTGATACGCTTAACTTCAATGTTTATTGTTTTTATTTTTCCACACTTACTGGGATCTTTTTTATGAGTGTATTGCAGCTTCGTATTGAGAGCTCACATCTACTTTCTTCCTTTTTTCAGTGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAGGTTATTCCCCCATGTTCCATAGTCTTTACTCTAGACGTACCAGACTTCTTTGGTAGATCTGGACTCTGTAGGATAATATATGACATCAACTTCACAATAGTAAATTGAATGTAGTATAAATTTTGTGCATGTGTATAATTGCAGGCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAGGTAAATATCCAGCTGTATATGGGTAAACCTAAAATTGCAGAGAAAATATCATTATGTTGACTGTTGAGTATGGTCTAGTAACACTTTCCATGGACAGGCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAGGTAATGAATCCTTCAATTGCTTTGCATCAAGAAAGAAGTTTCTTCAGTTTCTGTGAGCAAAATTTCATACATATCAGGTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAGGTACAAAGTTTTAACTTCTCCAACAACTTAGGTGCTTTGTGGTCCTTCGTTCACTCTTCTGTATCTAGTCAACTAATCCTAAGACATGTTACAGGATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAGGTCAGTATAATTTCCTGATACGTCCTTGATTTGTCCGTCCATGTTATTCTTATGCATTTGCATTTCTCCTGCCCAGATCTTTTTTCCTGTAGTACTTTGCATGTTTTTTTCTTCTTGATCACGCTTAGTTTTATGTGGAATGGCCTCAATTGCAACCGTTTATGAACTTGACTGAGGCCTGAGTTTTAGTGAACAACCTTAAAGTTGCATGCTGTCAAGGATTACAGTGATTATGTTACTTGAAAGTTGACCAGTCATCCTTTTCTACTACAAGAATACAAGAAGCCGTCTTGTTGTCGTGTATTAGACATAACTAGGAGTAGATATTTACCCCTATCCTTCTTCTTGGGTTTCAAGAATTGAGTTATCTTGAGAAACTACTACATTTTCTTGAAAAATGACGGAGGAGTACAAAATTTTTCTCAAAGTGCAATTTTTTTAACAGGTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTCCGTCAAGCTAAGGTACATTATATCCATCATCATCTCTATTACTCATCGACCAAAACATTTAGTCAGTCGGGGTTGTTGGACTCAGTGACTCTACATCTTGGATTCGTCTCTTCGTGTAATATCAATCAGGAAAGAGCTTGTCCTGTGTATATGTACCTTTCCATACTATGTTTTGATCTTTATTTTGTTTGTCAGGGTGAGAAGGGTGTCTCATTAGCAGGCTTCACGAGCTGGCTTATTTGGCGGTCCGCGTATCTGACTCGAGTTATCAGCTGGAGGAACAGGTTTTACGTGGCTATGAACTGGGGAACAACGTTAATCTTTGGCAGAGACAATACTAAGATAGGATAAACTACCACTTCTAGTAGGATTTTCATGTTCTTGATCCATTTTTTGAACACTTCTAATAACCTACCTTGTAGTGTTATCAATAATGTTAATATCTTTGAGGATTGAAAAAGAAAAGGGGGAAAAAGTGCTTTGTCAAAATGGAATTATGAGGGTTGGGGCAAGGGATCTTTGACGACGTTAGAGTTATAATGTTACATCATTTCAAAACGTTATTAAATATTATGTCACATATTATTTTTGTTAAGTATTCATAACAATATTTCAAAGAACATGGAACATT</genome_strand>
        <mrna_strand>TTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAG................................................................................................................................................GCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAG.................................................................................................GCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAGGTAATGAATCCTTCAATTGCTTTGCATCAAGAAAGAAGTTTCTTCAGTTTCTGTGAGCAAAATTTCATACATATCAGGTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAG..............................................................................................GATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTCCGTCAAGCTAAG.......................................................................................................................................................................................GGTGAGAAGGGTGTCTCATTAGCAGGCTTCACGAGCTGGCTTATTTGGCGGTCCGCGTATCTGACTCGAGTTATCAGCTGGAGGAACAGGTTTTACGTGGCTATGAACTGGGGAACAACGTTAATCTTTGGCAGAGACAATACTAAGATAGGATAAACTACCACTTCTAGTAGGATTTTCATGTTCTTGATCCATTTTTTGAACACTTCTAATAACCTACCTTGTAGTGTTATCAATAATGTTAATATCTTTGAGGATTGAAAAAGAAAAGGGGGAAAAAGTGCTTTGTCAAAATGGAATTATGAGGGTTGGGGCAAGGGATCTTTGACGACGTTAGAGTTATAATGTTACATCATTTCAAAACGTTATTAAATATTATGTCACATATTATTTTTGTTAAGTATTCATAACAATATTTCAAAGAACATGGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619412" ref_strand="+" ref_description="SGN-E619412 [70101]">
      <seq>taagttccttctgtagaagatgtgtttgcaataggagattgtgctggttttcttgaacagactggaaagccggtgcttccggctcttgctcaggttgctgaaaggcaagggaagtatcttgttaaattgttcaccaacattgggaaacagaatggaggcaaagctctctcagccaaagacatcactctaggagatccatttgtttacaagcatcttggaagcatggcaactgtggggcgttacaaggctctagttgatctccgtcaagccaagggtgagaagggtgtctcattagcaggcttcatgagctggtttatttggcgctccgcatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="88023" stop="86462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87725" g_stop="87633" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87187" g_stop="87008" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="273" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87007" i_stop="86825" i_length="183">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86824" g_stop="86762" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="336" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E619412" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87725" e_stop="87633"/>
          <exon e_start="87187" e_stop="87008"/>
          <exon e_start="86824" e_stop="86762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAGGTCAGTATAATTTCCTGATACGTCCTTGATTTGTCCGTCCATGTTATTCTTATGCATTTGCATTTCTCCTGCCCAGATCTTTTTTCCTGTAGTACTTTGCATGTTTTTTTCTTCTTGATCACGCTTAGTTTTATGTGGAATGGCCTCAATTGCAACCGTTTATGAACTTGACTGAGGCCTGAGTTTTAGTGAACAACCTTAAAGTTGCATGCTGTCAAGGATTACAGTGATTATGTTACTTGAAAGTTGACCAGTCATCCTTTTCTACTACAAGAATACAAGAAGCCGTCTTGTTGTCGTGTATTAGACATAACTAGGAGTAGATATTTACCCCTATCCTTCTTCTTGGGTTTCAAGAATTGAGTTATCTTGAGAAACTACTACATTTTCTTGAAAAATGACGGAGGAGTACAAAATTTTTCTCAAAGTGCAATTTTTTTAACAGGTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTCCGTCAAGCTAAGGTACATTATATCCATCATCATCTCTATTACTCATCGACCAAAACATTTAGTCAGTCGGGGTTGTTGGACTCAGTGACTCTACATCTTGGATTCGTCTCTTCGTGTAATATCAATCAGGAAAGAGCTTGTCCTGTGTATATGTACCTTTCCATACTATGTTTTGATCTTTATTTTGTTTGTCAGGGTGAGAAGGGTGTCTCATTAGCAGGCTTCACGAGCTGGCTTATTTGGCGGTCCGCGTATCTG</genome_strand>
        <mrna_strand>TAAGTTCCTTCTGTAGAAGATGTGTTTGCAATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCAACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTAGTTGATCTCCGTCAAGCCAAG.......................................................................................................................................................................................GGTGAGAAGGGTGTCTCATTAGCAGGCTTCATGAGCTGGTTTATTTGGCGCTCCGCATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697387" ref_strand="+" ref_description="SGN-E697387 [FA02CH05]">
      <seq>cgacctacaggggttgaattcagcggggagctaagtgattttattatgagagatgtacgcgaacgttatgctcatgtcaaaaactacattcatgtgaccctcattgaggctaatgagattttgtcttcatttgatgttgggttgcgggagtatgcgacaaagcatttgaccaaggttggtgtccgccttgttcatggtgttgtaaaagaagtacatccagataaaatagttctcagtgatggaagtgatgttccatatggccttctcgtttggtctactggagttggtccttccaattttgttaaatcactaaatgttcccaagtctcctggtggaaggattggaattgatgaatggttgcgagttccttccgtacaagatgtgtttgctataggagattgtgctggttttcttgaacagactggaaagccggtgcttccggctcttgctcaggttgctgaaaggcaagggaagtatcttgttaaattgttcaccgacattgggaaacagaatggaggcaaagctctctcagccaaagacatcactctaggagatccatttgtttacaagcatcttggaagcatggcaactgtggggcgttacaaaggctcttgttgatctccgtccagctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="88652" stop="86708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88353" g_stop="88246" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88245" i_stop="88149" i_length="97">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88148" g_stop="88083" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="174" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88082" i_stop="88006" i_length="77">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88005" g_stop="87842" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="338" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87841" i_stop="87748" i_length="94">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87747" g_stop="87633" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="453" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87187" g_stop="87008" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="634" r_length="181" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E697387" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88353" e_stop="88246"/>
          <exon e_start="88148" e_stop="88083"/>
          <exon e_start="88005" e_stop="87842"/>
          <exon e_start="87747" e_stop="87633"/>
          <exon e_start="87187" e_stop="87008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAGGTAAATATCCAGCTGTATATGGGTAAACCTAAAATTGCAGAGAAAATATCATTATGTTGACTGTTGAGTATGGTCTAGTAACACTTTCCATGGACAGGCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAGGTAATGAATCCTTCAATTGCTTTGCATCAAGAAAGAAGTTTCTTCAGTTTCTGTGAGCAAAATTTCATACATATCAGGTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAGGTACAAAGTTTTAACTTCTCCAACAACTTAGGTGCTTTGTGGTCCTTCGTTCACTCTTCTGTATCTAGTCAACTAATCCTAAGACATGTTACAGGATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAGGTCAGTATAATTTCCTGATACGTCCTTGATTTGTCCGTCCATGTTATTCTTATGCATTTGCATTTCTCCTGCCCAGATCTTTTTTCCTGTAGTACTTTGCATGTTTTTTTCTTCTTGATCACGCTTAGTTTTATGTGGAATGGCCTCAATTGCAACCGTTTATGAACTTGACTGAGGCCTGAGTTTTAGTGAACAACCTTAAAGTTGCATGCTGTCAAGGATTACAGTGATTATGTTACTTGAAAGTTGACCAGTCATCCTTTTCTACTACAAGAATACAAGAAGCCGTCTTGTTGTCGTGTATTAGACATAACTAGGAGTAGATATTTACCCCTATCCTTCTTCTTGGGTTTCAAGAATTGAGTTATCTTGAGAAACTACTACATTTTCTTGAAAAATGACGGAGGAGTACAAAATTTTTCTCAAAGTGCAATTTTTTTAACAGGTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTAC-AAGGCTCTTGTTGATCTCCGTCAAGCTAAG</genome_strand>
        <mrna_strand>CGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAG.................................................................................................GCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAG.............................................................................GTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAG..............................................................................................GATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTACAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAAGGCTCTTGTTGATCTCCGTCCAGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210926" ref_strand="+" ref_description="SGN-E210926 [cLEC-69-M8]">
      <seq>taatgagattttgtcttcatttgatgttgggttgcgggagtatgcgacaaagcatttgaccaaggttggtgtccgccttgttcatggtgttgtaaaagaagtacatccagataaaatagttctcagtgatggaagtgatgttccatatggccttctcgtttggtctactggagttggtccttccaattttgttaaatcactaaatgttcccaagtctcctggtggaaggattggaattgatgaatggttgcgagttccttccgtagaagatgtgtttgctataggagattgtgctggttttcttgaacagactggaaagccggtgcttccggctcttgctcaggttgctgaaaggcaagggaagtatcttgttaaattgttcaccgacattgggaaacagaatggaggcaaagctctctcagccaaagacatcactctaggagatccatttgtttacaagcatcttggaagcatggcaactgtggggcgttacaaggctcttgttgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="88446" stop="86720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88146" g_stop="88083" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88082" i_stop="88006" i_length="77">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88005" g_stop="87842" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="228" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87841" i_stop="87748" i_length="94">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87747" g_stop="87633" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="343" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87187" g_stop="87020" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="511" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E210926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88146" e_stop="88083"/>
          <exon e_start="88005" e_stop="87842"/>
          <exon e_start="87747" e_stop="87633"/>
          <exon e_start="87187" e_stop="87020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAGGTAATGAATCCTTCAATTGCTTTGCATCAAGAAAGAAGTTTCTTCAGTTTCTGTGAGCAAAATTTCATACATATCAGGTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAGGTACAAAGTTTTAACTTCTCCAACAACTTAGGTGCTTTGTGGTCCTTCGTTCACTCTTCTGTATCTAGTCAACTAATCCTAAGACATGTTACAGGATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAGGTCAGTATAATTTCCTGATACGTCCTTGATTTGTCCGTCCATGTTATTCTTATGCATTTGCATTTCTCCTGCCCAGATCTTTTTTCCTGTAGTACTTTGCATGTTTTTTTCTTCTTGATCACGCTTAGTTTTATGTGGAATGGCCTCAATTGCAACCGTTTATGAACTTGACTGAGGCCTGAGTTTTAGTGAACAACCTTAAAGTTGCATGCTGTCAAGGATTACAGTGATTATGTTACTTGAAAGTTGACCAGTCATCCTTTTCTACTACAAGAATACAAGAAGCCGTCTTGTTGTCGTGTATTAGACATAACTAGGAGTAGATATTTACCCCTATCCTTCTTCTTGGGTTTCAAGAATTGAGTTATCTTGAGAAACTACTACATTTTCTTGAAAAATGACGGAGGAGTACAAAATTTTTCTCAAAGTGCAATTTTTTTAACAGGTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTC</genome_strand>
        <mrna_strand>TAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAG.............................................................................GTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAG..............................................................................................GATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233087" ref_strand="+" ref_description="SGN-E233087 [cLED-6-L17]">
      <seq>tcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacggttggcgatcgtggagtctctcatgagcattacagatttaaggttgcatatgacaagcttgtcattgcttctggagctgaacctttgacctttggcataaagggagtggaggaacatgccttctttctccgtgaagtacagaatgcccaagaaatcaggaagaagcttcttatgaacttgatggtctcagaaactccaggcatctcggaagaagagaaagagcgcttgttgcactgtgttgtgattggaggtggacctacaggggttgaattcagcggggagctaagtgattntattatgagagatgtacgcgaacgttatgctcatgtcaaaaactacattcatgtgaccctcattgaggctaatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89577" stop="87942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89277" g_stop="89063" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88551" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="429" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88550" i_stop="88407" i_length="144">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88406" g_stop="88246" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="590" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88245" i_stop="88149" i_length="97">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88148" g_stop="88140" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="599" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E233087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89277" e_stop="89063"/>
          <exon e_start="88764" e_stop="88551"/>
          <exon e_start="88406" e_stop="88246"/>
          <exon e_start="88148" e_stop="88140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAGGTTATTCCCCCATGTTCCATAGTCTTTACTCTAGACGTACCAGACTTCTTTGGTAGATCTGGACTCTGTAGGATAATATATGACATCAACTTCACAATAGTAAATTGAATGTAGTATAAATTTTGTGCATGTGTATAATTGCAGGCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAGGTAAATATCCAGCTGTATATGGGTAAACCTAAAATTGCAGAGAAAATATCATTATGTTGACTGTTGAGTATGGTCTAGTAACACTTTCCATGGACAGGCTAATGAG</genome_strand>
        <mrna_strand>TCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAG................................................................................................................................................GCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTNTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAG.................................................................................................GCTAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264754" ref_strand="+" ref_description="SGN-E264754 [cLEG-71-G12]">
      <seq>gctgattcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacggttggcgatcgtggagtctctcatgagcattacagatttaaggttgcatatgacaagcttgtcattgcttctggagctgaacctttgacctttggcataaagggagtggaggaacatgccttctttctccgtgaagtacagaatgcccaagaaatcaggaagaagcttcttatgaacttgatggtctcagaaactccaggcatctcggaagaagaaaagagcgcttgttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89686" stop="88071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89386" g_stop="89063" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88551" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="538" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88550" i_stop="88407" i_length="144">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88406" g_stop="88371" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="573" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E264754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89386" e_stop="89063"/>
          <exon e_start="88764" e_stop="88551"/>
          <exon e_start="88406" e_stop="88371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAGGTTATTCCCCCATGTTCCATAGTCTTTACTCTAGACGTACCAGACTTCTTTGGTAGATCTGGACTCTGTAGGATAATATATGACATCAACTTCACAATAGTAAATTGAATGTAGTATAAATTTTGTGCATGTGTATAATTGCAGGCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACT</genome_strand>
        <mrna_strand>GCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAG................................................................................................................................................GCATCTCGGAAGAAGA-AAAGAGCGCTTGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266499" ref_strand="+" ref_description="SGN-E266499 [cLEI-5-A22]">
      <seq>cacatgcagctgctgagacggttgggggtgctgattcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacggttggcgatcgtggagtctctcatgagcattacagatttaaggttgcatatgacaagcttgtcattgcttctggagctgaacctttgacctttggcataaagggagtggaggaacatgccttctttctccgtgaagtacagaatgcccaagaaatcaggaagaagcttcttatgaacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89715" stop="88268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89415" g_stop="89063" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88568" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="550" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E266499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89415" e_stop="89063"/>
          <exon e_start="88764" e_stop="88568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGAT</genome_strand>
        <mrna_strand>CACATGCAGCTGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403471" ref_strand="+" ref_description="SGN-E403471 [PPC-10-P17]">
      <seq>actatgcaagtgagagaaatatattctgtgaaggcatttcaccattgagacatcctgcgccagtttttgaaaaagctgtaacaggtttcaattcgtcatacattccaagtacgcagatggtaaatcaattaagtttcgggaacagaggaatgaagtttacccctcaatatcagtttccacatgcagaagctcagacggttgggggttctgattcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactactatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacacctttgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagttacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatattgtgaaacggttggcgatcgtggagtttctcatgagcattacagatttaaggttgcatatgacaagcttgtcattgcttctggagccgaacctttgacctttggcattaagggagtggaggaacatgccttctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89892" stop="88323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89592" g_stop="89063" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88623" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="672" r_length="142" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E403471" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89592" e_stop="89063"/>
          <exon e_start="88764" e_stop="88623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTC</genome_strand>
        <mrna_strand>ACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATTTCACCATTGAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCGTCATACATTCCAAGTACGCAGATGGTAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGAAGCTCAGACGGTTGGGGGTTCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTACTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCTTTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTTACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATATTGTGAAACGGTTGGCGATCGTGGAGTTTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCCGAACCTTTGACCTTTGGCATTAAGGGAGTGGAGGAACATGCCTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270838" ref_strand="+" ref_description="SGN-E270838 [cLEM-6-G4]">
      <seq>ttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacggttggcgatcgtggagtctctcatgagcattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89610" stop="88416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89310" g_stop="89063" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88716" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="297" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E270838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89310" e_stop="89063"/>
          <exon e_start="88764" e_stop="88716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACA</genome_strand>
        <mrna_strand>TTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264744" ref_strand="+" ref_description="SGN-E264744 [cLEG-71-C12]">
      <seq>cccccgggctgcaggttctccttcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcaaaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaaccagtcacccagatacagaaagcactggcaaaggatccaaattcatatttcttcctagcatcctgcactggtgttgatgctgataaacatgaagtatactgtgaaacgggtggggatcgtggagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="89696" stop="88430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89381" g_stop="89063" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="340" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88764" g_stop="88730" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="375" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E264744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89381" e_stop="89063"/>
          <exon e_start="88764" e_stop="88730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAAGTGAGTATAACAAGCTCTTATTATTTCTCACATCCAAAATATGTCTCAATTACAACATATAATTCCTCTTTTCAATTTGATCAAATATATAGACATGATTACCTACATCCATTCAGGTAATGTTTTTTAGGAAATTAGGACAGAGTCCTAGGTAAATGGCATACCGACCAGAGAATTATTAGAGCAATACATTCAAGTAGTTAAAGGGAAAGGGACTTTGTTTAAACTGCATTCAACTTATTATTGTGTTCCATCTATTATGTTTGTGTGTGTTTTGATTTGAGAAGACACAATACAGGTATACTGTGAAACGGTTGGCGATCGTGGAGTCTC</genome_strand>
        <mrna_strand>TTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA..........................................................................................................................................................................................................................................................................................................GTATACTGTGAAACGGGTGGGGATCGTGGAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347423" ref_strand="+" ref_description="SGN-E347423 [cTOF-33-I9]">
      <seq>ttgactcctaatatcctggaaaatttcttatggggtttcatcttcttctttaaattcctaaagtgtcattcttaaacattgcataccatctatagtccaaacagtaattgccttaataaaaaatttcaacagtatcagcttcggtaaggggtactctgaaaatggcattggtaagggctgcaaggagtagctttaggcgttctggaggtgcaatcggaaactatgcaagtgagagaaatatattctgtgaaggcatatcaccatttagacatcctgcgccagtttttgaaaaagctgtaacaggtttcaattcatcatacattccaagtacccagatgataaatcaattaagtttcgggaacagaggaatgaagtttacccctcaatatcagtttccacatgcagcagctgagacggttgggggtgctgattcaaagaatgaaagatccagttatccaggccttgaagcaacaaaacagggcgaaaaacctagagtagttgttcttggatctggttgggccgcttgcagattcctcanaggaatagacactagtatgtatgatgttgtttgtatagcaccaagaaaccatatggtctttacaccattgcttgcatctacttgtgttggaacattggaattccgatcagttgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="91547" stop="88856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91247" g_stop="91185" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89748" g_stop="89156" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="656" r_length="593" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E347423" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91247" e_stop="91185"/>
          <exon e_start="89748" e_stop="89156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAGGTAATTCCTTTTTTTCTTGTTCTGATTTCTTGAGGCTTTTCTAATGTATATATACATATATTATGCTGGATCTTGATTGTACCATGTACAGTTTCATCATTATTGAAACTTATGTTGTGACCTTATGAGTATGTAATTAATCATGTGCAAGTTTTTACTGCTATTTTTGAGTATGATGTTATATATTGAACACATAGGTGTTCTTGATCTAAGGGTGGATCCAGGATTCAATTGAACCCATAAACTATTTCTGTTACTAGGTTAAAAAAATTAATATTTTGACATATTAAGCTCAATACTGTTAATCCGCTCCTCTCTTGATCTATTTTGGCATAAGCTAACTCAATCCGAGATATAGCTCACGAGGGAAGGATTGTCCAAGATATCTAAGTTAAAGATGTTTGTTTTTCTTCTTGTCCATTTTGGTTGTAGAAATTCGAATGTCAAATTATGTGTAGCAGATTTTGGTAGGCTGATGTTTACAATCGTTTTTAATTCCGTAATGCTGTCATTGGTTTCTTCGACTGATTCTTTTTGGTGTACCTCTTGATTTTGCTTCTAGTTTTTACTTTTGATGGTTCAAGCTAATATATTTGTAGAATTAGATATTTTCTTGTATAGAAGATTGAACCTTTTAGTTGCTAACTAATCATATAACTTAATATGGATTGCTTGCATTGATGGCGATCACATTTCTTCCATTGCTAGACGTGTGTTCTGCCATTCCAAATTTGAACTTAAGTATGTCGTGTTCAGAAATTTAATCCAACGAACTTTTGCTGATTGTTAGTAACCTTGTGTCAACAAATAGTTTGTTTTAAGATTTGAAGCAATGAAATGCATAACCTATAATGTTATTGGAGTTTTATATGTACCATCAAGTTGTTGTGCAATGATATCATCATCTTGACAGAGGTTTGGATTTCATACACAGACTGACTAGAGAGAATTCAAATGCGAAATTCATATCTGGTATGTATTAGCAAAGCCTGAGCAAATAAACTTCAAATTGAAATTGGCATAGTAAGTATGGTTGCACTCTTCATTTTCTTGACCAGATTCTTGTAAAATCTGCTACCAATTTTGGAATTTGGCACTAACTGGTCATATTTGTCTAGAGTACTGAGATTGTAGTGAGTGTATGCAAGATCATGGTGTATTGTGAATCCAGGTGTTTTATATCTGCATCCATACTAAGAATTTTGCGAGAACACTTCACACTGAAACTGCCACAGTGTAGAAATGCAAATTTTGTCTTTCCTGTTTCTGCTAGTTGGTTTAGGAACCATCTTTGTCTTGCTTTTGTCTTGTCCTTGACTGATACGCTTAACTTCAATGTTTATTGTTTTTATTTTTCCACACTTACTGGGATCTTTTTTATGAGTGTATTGCAGCTTCGTATTGAGAGCTCACATCTACTTTCTTCCTTTTTTCAGTGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAA</genome_strand>
        <mrna_strand>TTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCANAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331510" ref_strand="+" ref_description="SGN-E331510 [cTOD-9-G6]">
      <seq>cgaaatggcagagttgcctctttcattttgccttcatctacagttgcatacatattttgcagcaaatcacccaaatgtttaaattatagcagtagagaacttgtatttgtgatttctccataccctttttgttttacattagaaaaaaaaaatgcatcagattttgaccaatattttcttgctgatcaaggttttgtctatataaaattaaagagggtcttttttttgaagtgtaaaagtaatactgttgactcctaatatcctggaaaatttcttatggggtttcatcttcttctttaaattcctaaagtgtcattcttaaacattgcataccatctatagtccaaacagtaattgccttaataaaaaatttcaacagtatcagcttcggtaaggggtactctgaaaatggcattggtaagggctgcaaggagtagctttaggcgttctggaggtgcaatcggaaactatgcaagtgagagaaatatattctgtgaaggcatatcaccatttagacatcctgcgccagtttttgaaaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="91794" stop="89214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91494" g_stop="91185" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89748" g_stop="89514" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="545" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E331510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91494" e_stop="91185"/>
          <exon e_start="89748" e_stop="89514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGTTGCATACATATTTTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAGGTAATTCCTTTTTTTCTTGTTCTGATTTCTTGAGGCTTTTCTAATGTATATATACATATATTATGCTGGATCTTGATTGTACCATGTACAGTTTCATCATTATTGAAACTTATGTTGTGACCTTATGAGTATGTAATTAATCATGTGCAAGTTTTTACTGCTATTTTTGAGTATGATGTTATATATTGAACACATAGGTGTTCTTGATCTAAGGGTGGATCCAGGATTCAATTGAACCCATAAACTATTTCTGTTACTAGGTTAAAAAAATTAATATTTTGACATATTAAGCTCAATACTGTTAATCCGCTCCTCTCTTGATCTATTTTGGCATAAGCTAACTCAATCCGAGATATAGCTCACGAGGGAAGGATTGTCCAAGATATCTAAGTTAAAGATGTTTGTTTTTCTTCTTGTCCATTTTGGTTGTAGAAATTCGAATGTCAAATTATGTGTAGCAGATTTTGGTAGGCTGATGTTTACAATCGTTTTTAATTCCGTAATGCTGTCATTGGTTTCTTCGACTGATTCTTTTTGGTGTACCTCTTGATTTTGCTTCTAGTTTTTACTTTTGATGGTTCAAGCTAATATATTTGTAGAATTAGATATTTTCTTGTATAGAAGATTGAACCTTTTAGTTGCTAACTAATCATATAACTTAATATGGATTGCTTGCATTGATGGCGATCACATTTCTTCCATTGCTAGACGTGTGTTCTGCCATTCCAAATTTGAACTTAAGTATGTCGTGTTCAGAAATTTAATCCAACGAACTTTTGCTGATTGTTAGTAACCTTGTGTCAACAAATAGTTTGTTTTAAGATTTGAAGCAATGAAATGCATAACCTATAATGTTATTGGAGTTTTATATGTACCATCAAGTTGTTGTGCAATGATATCATCATCTTGACAGAGGTTTGGATTTCATACACAGACTGACTAGAGAGAATTCAAATGCGAAATTCATATCTGGTATGTATTAGCAAAGCCTGAGCAAATAAACTTCAAATTGAAATTGGCATAGTAAGTATGGTTGCACTCTTCATTTTCTTGACCAGATTCTTGTAAAATCTGCTACCAATTTTGGAATTTGGCACTAACTGGTCATATTTGTCTAGAGTACTGAGATTGTAGTGAGTGTATGCAAGATCATGGTGTATTGTGAATCCAGGTGTTTTATATCTGCATCCATACTAAGAATTTTGCGAGAACACTTCACACTGAAACTGCCACAGTGTAGAAATGCAAATTTTGTCTTTCCTGTTTCTGCTAGTTGGTTTAGGAACCATCTTTGTCTTGCTTTTGTCTTGTCCTTGACTGATACGCTTAACTTCAATGTTTATTGTTTTTATTTTTCCACACTTACTGGGATCTTTTTTATGAGTGTATTGCAGCTTCGTATTGAGAGCTCACATCTACTTTCTTCCTTTTTTCAGTGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGT</genome_strand>
        <mrna_strand>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGTTGCATACATATTTTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331538" ref_strand="+" ref_description="SGN-E331538 [cTOD-9-F5]">
      <seq>cgaaatggcagagttgcctctttcattttgccttcatctacaggtgcatacatattgtgcagcaaatcacccaaatgtttaaattatagcagtagagaacttgtatttgtgatttctccataccctttttgttttacattagaaaaaaaaaatgcatcagattttgaccaatattttcttgctgatcaaggttttgtctatataaaattaaagagggtcttttttttgaagtgtaaaagtaatactgttgactcctaatatcctggaaaatttcttatggggtttcatcttcttctttaaattcctaaagtgtcattcttaaacattgcataccatctatagtccaaacagtaattgccttaataaaaaatttcaacagtatcagcttcggtaaggggtactctgaaaatggcattggtaagggctgcaaggagtaactttaggcgttctggaggtgcaatcggaaactatgcaagtgagagaaatatattctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="91794" stop="89264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91494" g_stop="91185" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89748" g_stop="89564" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="495" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E331538" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91494" e_stop="91185"/>
          <exon e_start="89748" e_stop="89564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGTTGCATACATATTTTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAGGTAATTCCTTTTTTTCTTGTTCTGATTTCTTGAGGCTTTTCTAATGTATATATACATATATTATGCTGGATCTTGATTGTACCATGTACAGTTTCATCATTATTGAAACTTATGTTGTGACCTTATGAGTATGTAATTAATCATGTGCAAGTTTTTACTGCTATTTTTGAGTATGATGTTATATATTGAACACATAGGTGTTCTTGATCTAAGGGTGGATCCAGGATTCAATTGAACCCATAAACTATTTCTGTTACTAGGTTAAAAAAATTAATATTTTGACATATTAAGCTCAATACTGTTAATCCGCTCCTCTCTTGATCTATTTTGGCATAAGCTAACTCAATCCGAGATATAGCTCACGAGGGAAGGATTGTCCAAGATATCTAAGTTAAAGATGTTTGTTTTTCTTCTTGTCCATTTTGGTTGTAGAAATTCGAATGTCAAATTATGTGTAGCAGATTTTGGTAGGCTGATGTTTACAATCGTTTTTAATTCCGTAATGCTGTCATTGGTTTCTTCGACTGATTCTTTTTGGTGTACCTCTTGATTTTGCTTCTAGTTTTTACTTTTGATGGTTCAAGCTAATATATTTGTAGAATTAGATATTTTCTTGTATAGAAGATTGAACCTTTTAGTTGCTAACTAATCATATAACTTAATATGGATTGCTTGCATTGATGGCGATCACATTTCTTCCATTGCTAGACGTGTGTTCTGCCATTCCAAATTTGAACTTAAGTATGTCGTGTTCAGAAATTTAATCCAACGAACTTTTGCTGATTGTTAGTAACCTTGTGTCAACAAATAGTTTGTTTTAAGATTTGAAGCAATGAAATGCATAACCTATAATGTTATTGGAGTTTTATATGTACCATCAAGTTGTTGTGCAATGATATCATCATCTTGACAGAGGTTTGGATTTCATACACAGACTGACTAGAGAGAATTCAAATGCGAAATTCATATCTGGTATGTATTAGCAAAGCCTGAGCAAATAAACTTCAAATTGAAATTGGCATAGTAAGTATGGTTGCACTCTTCATTTTCTTGACCAGATTCTTGTAAAATCTGCTACCAATTTTGGAATTTGGCACTAACTGGTCATATTTGTCTAGAGTACTGAGATTGTAGTGAGTGTATGCAAGATCATGGTGTATTGTGAATCCAGGTGTTTTATATCTGCATCCATACTAAGAATTTTGCGAGAACACTTCACACTGAAACTGCCACAGTGTAGAAATGCAAATTTTGTCTTTCCTGTTTCTGCTAGTTGGTTTAGGAACCATCTTTGTCTTGCTTTTGTCTTGTCCTTGACTGATACGCTTAACTTCAATGTTTATTGTTTTTATTTTTCCACACTTACTGGGATCTTTTTTATGAGTGTATTGCAGCTTCGTATTGAGAGCTCACATCTACTTTCTTCCTTTTTTCAGTGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGT</genome_strand>
        <mrna_strand>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGGTGCATACATATTGTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAACTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310070" ref_strand="+" ref_description="SGN-E310070 [cLEZ-8-I4]">
      <seq>tgtatttgtgatttctccataccctttttgttttacattagaaaaaaaaaatgcatcagattttgaccaatattttcttgctgatcaaggttttgtctatataaaattaaagagggtcttttttttgaagtgtaaaagtaatactgttgactcctaatatcctggaaaatttcttatggggtttcatcttcttctttaaattcctaaagtgtcattcttaaacattgcataccatctatagtccaaacagtaattgccttaataaaaaatttcaacagtatcagcttcggtgaggggtactctgaaaatggcattggtaagggctgcaaggagtagctttaggcgttctggaggtgcaatcggaaactatgcaagtgagagaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="91693" stop="89270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91393" g_stop="91185" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89748" g_stop="89570" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="388" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E310070" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91393" e_stop="91185"/>
          <exon e_start="89748" e_stop="89570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAGGTAATTCCTTTTTTTCTTGTTCTGATTTCTTGAGGCTTTTCTAATGTATATATACATATATTATGCTGGATCTTGATTGTACCATGTACAGTTTCATCATTATTGAAACTTATGTTGTGACCTTATGAGTATGTAATTAATCATGTGCAAGTTTTTACTGCTATTTTTGAGTATGATGTTATATATTGAACACATAGGTGTTCTTGATCTAAGGGTGGATCCAGGATTCAATTGAACCCATAAACTATTTCTGTTACTAGGTTAAAAAAATTAATATTTTGACATATTAAGCTCAATACTGTTAATCCGCTCCTCTCTTGATCTATTTTGGCATAAGCTAACTCAATCCGAGATATAGCTCACGAGGGAAGGATTGTCCAAGATATCTAAGTTAAAGATGTTTGTTTTTCTTCTTGTCCATTTTGGTTGTAGAAATTCGAATGTCAAATTATGTGTAGCAGATTTTGGTAGGCTGATGTTTACAATCGTTTTTAATTCCGTAATGCTGTCATTGGTTTCTTCGACTGATTCTTTTTGGTGTACCTCTTGATTTTGCTTCTAGTTTTTACTTTTGATGGTTCAAGCTAATATATTTGTAGAATTAGATATTTTCTTGTATAGAAGATTGAACCTTTTAGTTGCTAACTAATCATATAACTTAATATGGATTGCTTGCATTGATGGCGATCACATTTCTTCCATTGCTAGACGTGTGTTCTGCCATTCCAAATTTGAACTTAAGTATGTCGTGTTCAGAAATTTAATCCAACGAACTTTTGCTGATTGTTAGTAACCTTGTGTCAACAAATAGTTTGTTTTAAGATTTGAAGCAATGAAATGCATAACCTATAATGTTATTGGAGTTTTATATGTACCATCAAGTTGTTGTGCAATGATATCATCATCTTGACAGAGGTTTGGATTTCATACACAGACTGACTAGAGAGAATTCAAATGCGAAATTCATATCTGGTATGTATTAGCAAAGCCTGAGCAAATAAACTTCAAATTGAAATTGGCATAGTAAGTATGGTTGCACTCTTCATTTTCTTGACCAGATTCTTGTAAAATCTGCTACCAATTTTGGAATTTGGCACTAACTGGTCATATTTGTCTAGAGTACTGAGATTGTAGTGAGTGTATGCAAGATCATGGTGTATTGTGAATCCAGGTGTTTTATATCTGCATCCATACTAAGAATTTTGCGAGAACACTTCACACTGAAACTGCCACAGTGTAGAAATGCAAATTTTGTCTTTCCTGTTTCTGCTAGTTGGTTTAGGAACCATCTTTGTCTTGCTTTTGTCTTGTCCTTGACTGATACGCTTAACTTCAATGTTTATTGTTTTTATTTTTCCACACTTACTGGGATCTTTTTTATGAGTGTATTGCAGCTTCGTATTGAGAGCTCACATCTACTTTCTTCCTTTTTTCAGTGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATA</genome_strand>
        <mrna_strand>TGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTGAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243049" ref_strand="+" ref_description="SGN-E243049 [cLEF-1-B19]">
      <seq>tggatttacaagtgatgctggaggaaattctattgatttgcgctggtttaggcataaatcaaacttgcaccatgtgtgggatagggagataatactaacagctgcaaaagactactatgcgaaggatataaacctccttgaagaagacattgaagggaacttcactgacggaatttggtctgatgatcttgcttcttggagagaatgtggcaatgtcttttcttgcgtaaacaagtttgcaacggaaagtataaatatagcatgcaaatggggatacaaaggtgttgaagccggtgaaactttatcagatgattacttcaattcaagacttccaatagtaatgaaacgagtagcacaaggtggaataagattagcgatgcttttaaacaacgtttttggagcttctcaacaagaagattcagttgttgcaacttaattaccaaataattttaataaaatagtaatgaaaaaccatatattacttcatgtttgaccaaaataaaataaaaacactaaattagatgacacatctttgttgtatttaaattcgtgtaaattgtaattacccacagagatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="96106" stop="94431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95806" g_stop="95734" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95733" i_stop="95610" i_length="124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95609" g_stop="95514" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95513" i_stop="95390" i_length="124">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95389" g_stop="95325" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="234" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95324" i_stop="95188" i_length="137">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95187" g_stop="95114" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="308" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95113" i_stop="95005" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95004" g_stop="94731" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="582" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E243049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95806" e_stop="95734"/>
          <exon e_start="95609" e_stop="95514"/>
          <exon e_start="95389" e_stop="95325"/>
          <exon e_start="95187" e_stop="95114"/>
          <exon e_start="95004" e_stop="94731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCATGTAAGTATATAACTTATCGAGTTTGATCCAAGATTTAAAGTTAATGCGTTCAAATTTGGCTATGATAGTAAGAAAAAAGATGATTAACGACGTATGTTTTCCTTTGTAAAAAATAATGTTATAGGTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGACGTAAGAGTCAATCTCTTAAACTTGTCAGAACATTTCATTTAGACATTCGAACCAAGTCATAAACTGTTCCAACTAGACATTTTCGGTTCAAATTTTGATTTTGTTAAATCTTATACATACTCAGGGAATTTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTGCGTAAACAAGTGAGTTCTTTCTCTATGTAAATCGGAAGTTGATTTTGAAACGACTAAACGTACGAAAACATATATACTTTGACTATGACTTCAATAGCGATTTTACACTTGGAGAAATTGATTAATTGTTGATGTGATGTTTTTAGGTTTGCAACGGAAAGTATAAATATAGCATGCAAATGGGGATACAAAGGTGTTGAAGCCGGTGAAACTTTATCAGGTATTTTTTACTTGACTGTCTACGATTTTATTACGTATGTTTGGGATACAAACTAATATTTGAGAAAATAAATTATTAATTGACATTTAATCTATTTTAATTTGTGTAGATGATTACTTCAATTCAAGACTTCCAATAGTAATGAAACGAGTAGCACAAGGTGGAATAAGATTAGCGATGCTTTTAAACAACGTTTTTGGAGCTTCTCAACAAGAAGATTCAGTTGTTGCAACTTAATTACCAAATAATTTTAATAAAATAGTAATGAAAAACCATATATTACTTCATGTTTGACCAAAATAAAATAAAAACACTAAATTAGATGACACATCTTTGTTGTATTTAAATTCGTGTAAATTGTAATTACCCACAGAGATGTATTT</genome_strand>
        <mrna_strand>TGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCAT............................................................................................................................GTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGAC............................................................................................................................GGAATTTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTGCGTAAACAA.........................................................................................................................................GTTTGCAACGGAAAGTATAAATATAGCATGCAAATGGGGATACAAAGGTGTTGAAGCCGGTGAAACTTTATCAG.............................................................................................................ATGATTACTTCAATTCAAGACTTCCAATAGTAATGAAACGAGTAGCACAAGGTGGAATAAGATTAGCGATGCTTTTAAACAACGTTTTTGGAGCTTCTCAACAAGAAGATTCAGTTGTTGCAACTTAATTACCAAATAATTTTAATAAAATAGTAATGAAAAACCATATATTACTTCATGTTTGACCAAAATAAAATAAAAACACTAAATTAGATGACACATCTTTGTTGTATTTAAATTCGTGTAAATTGTAATTACCCACAGAGATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624252" ref_strand="+" ref_description="SGN-E624252 [GI|50657595]">
      <seq>aggatgttgaggttaactttattaagcattattttctttctctgtcttgcttttatcaaccatcatggtgctgaagcatggagcaaagaggggcatatgatgacatgtcgcatcgcgcagggcttgttgaatgatgaggcagctcatgcagtcaagatgttgttgccggaatatgttaacggcgacttatcggccctctgtgtgtggccggatcaagtccggcactggtataagtataaatggacaagccctctacacttcattgatacaccagataaagcttgcaactttgattatgaaagggactgtcatgatcaacatggagtgaaggatatgtgtgttgctggtgcaattcagaactttactactcaactctctcattacagagagggaacttctgatcgtcgatataatatgacagaggccttgctgttcttgtcacattttatgggagatatccatcaaccaatgcatgttggctttacaagtgatgctggaggaaatagtattgatttacgctggtttaggcataaatcgaacttgcaccatgtgtgggatagggagataattctaacagctgctaaagactactatgcaaaggatgtaaacctccttgaagaagacattgaaggaaacttcactgacggaatttggtccgatgatcttgcttcttggagagaatgtggcaatgtcttttcttgtgtaaacaagtttgcaacggaaagtataaatatagcatgtaaatggggatacaaaggtgttgaagctggtgaaactttatcagatgattatttcaattcaagacttccaatagtaatgaaacgagtagcacaaggtggaatacgattagccatgcttttaagcaacgtttttggagtttctcaacaagaagattcagttggtgcaacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="96938" stop="94577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96638" g_stop="96519" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96518" i_stop="96446" i_length="73">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96445" g_stop="96265" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="301" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96264" i_stop="96167" i_length="98">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96166" g_stop="96059" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="409" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96058" i_stop="95978" i_length="81">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95977" g_stop="95922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="465" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95921" i_stop="95818" i_length="104">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95817" g_stop="95734" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="549" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95733" i_stop="95610" i_length="124">
            <donor d_prob="0.934" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95609" g_stop="95514" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="645" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95513" i_stop="95390" i_length="124">
            <donor d_prob="0.881" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95389" g_stop="95325" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="710" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95324" i_stop="95188" i_length="137">
            <donor d_prob="0.935" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95187" g_stop="95114" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="784" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95113" i_stop="95005" i_length="109">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="95004" g_stop="94877" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="912" r_length="128" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E624252" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96638" e_stop="96519"/>
          <exon e_start="96445" e_stop="96265"/>
          <exon e_start="96166" e_stop="96059"/>
          <exon e_start="95977" e_stop="95922"/>
          <exon e_start="95817" e_stop="95734"/>
          <exon e_start="95609" e_stop="95514"/>
          <exon e_start="95389" e_stop="95325"/>
          <exon e_start="95187" e_stop="95114"/>
          <exon e_start="95004" e_stop="94877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTTGAGGTTAACTTCATTAAGCAGTATTTTCTTTCTCTGTGTTGCTTTTATCAACCAACATGGTGTTGAAGCATGGAGCAAAGAGGGGCATGTGATGACTTGTCGAATCGCGCAGGTATATATTTATTTGAAAAATGTTTTTTTTTTTTTTGGCTTCAAATTATAAGAACTATTGCATGTGGAAACAGGGCTTGTTGAATGATGAGGCAGCTCATGCAGTCAAGATGTTGTTGCCGGAATATGTTAACGGTGACTTATCGGCCCTCTGTGTGTGGCCAGACCAAGTCAGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAAGTAAGTCAAATGCATCCAAAAAACGCGATGTATTTATTCTCTCTTTTCACAATTTGATCCTATAATTCATAATGTTTCTTTTTTTGTATGATGAGAAGGGGACTGTCATGATCAACATGGAGTAAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGATGTAAGGATCAAAAATGGTAAATTTCTTATATTGTATGGGGTGACTATCTTATGACACTATATAATTTGTCAATAATTACAGATAATATGACAGAGGCTTTGCTGTTTTTGTCACATTTCATGGGAGATATCCATCAAGTATGTACTCACTCTTTTTTTTTCACATTTGAAACGTTAAACAAATAGCAACCAATGTATGATTATTAGAAAAACTTGTTACCTTGTTGTTTTTGTGATTTCAGCCTATGCATGTTGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCATGTAAGTATATAACTTATCGAGTTTGATCCAAGATTTAAAGTTAATGCGTTCAAATTTGGCTATGATAGTAAGAAAAAAGATGATTAACGACGTATGTTTTCCTTTGTAAAAAATAATGTTATAGGTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGACGTAAGAGTCAATCTCTTAAACTTGTCAGAACATTTCATTTAGACATTCGAACCAAGTCATAAACTGTTCCAACTAGACATTTTCGGTTCAAATTTTGATTTTGTTAAATCTTATACATACTCAGGGAATTTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTGCGTAAACAAGTGAGTTCTTTCTCTATGTAAATCGGAAGTTGATTTTGAAACGACTAAACGTACGAAAACATATATACTTTGACTATGACTTCAATAGCGATTTTACACTTGGAGAAATTGATTAATTGTTGATGTGATGTTTTTAGGTTTGCAACGGAAAGTATAAATATAGCATGCAAATGGGGATACAAAGGTGTTGAAGCCGGTGAAACTTTATCAGGTATTTTTTACTTGACTGTCTACGATTTTATTACGTATGTTTGGGATACAAACTAATATTTGAGAAAATAAATTATTAATTGACATTTAATCTATTTTAATTTGTGTAGATGATTACTTCAATTCAAGACTTCCAATAGTAATGAAACGAGTAGCACAAGGTGGAATAAGATTAGCGATGCTTTTAAACAACGTTTTTGGAGCTTCTCAACAAGAAGATTCAGTTGTTGCAACTTAA</genome_strand>
        <mrna_strand>AGGATGTTGAGGTTAACTTTATTAAGCATTATTTTCTTTCTCTGTCTTGCTTTTATCAACCATCATGGTGCTGAAGCATGGAGCAAAGAGGGGCATATGATGACATGTCGCATCGCGCAG.........................................................................GGCTTGTTGAATGATGAGGCAGCTCATGCAGTCAAGATGTTGTTGCCGGAATATGTTAACGGCGACTTATCGGCCCTCTGTGTGTGGCCGGATCAAGTCCGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAA..................................................................................................GGGACTGTCATGATCAACATGGAGTGAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGAT.................................................................................ATAATATGACAGAGGCCTTGCTGTTCTTGTCACATTTTATGGGAGATATCCATCAA........................................................................................................CCAATGCATGTTGGCTTTACAAGTGATGCTGGAGGAAATAGTATTGATTTACGCTGGTTTAGGCATAAATCGAACTTGCACCAT............................................................................................................................GTGTGGGATAGGGAGATAATTCTAACAGCTGCTAAAGACTACTATGCAAAGGATGTAAACCTCCTTGAAGAAGACATTGAAGGAAACTTCACTGAC............................................................................................................................GGAATTTGGTCCGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTGTGTAAACAA.........................................................................................................................................GTTTGCAACGGAAAGTATAAATATAGCATGTAAATGGGGATACAAAGGTGTTGAAGCTGGTGAAACTTTATCAG.............................................................................................................ATGATTATTTCAATTCAAGACTTCCAATAGTAATGAAACGAGTAGCACAAGGTGGAATACGATTAGCCATGCTTTTAAGCAACGTTTTTGGAGTTTCTCAACAAGAAGATTCAGTTGGTGCAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589782" ref_strand="+" ref_description="SGN-E589782 [43364]">
      <seq>cttcttttganggatgttgaggttaacttcattaagcattattttctttctctgtcttgcttttatcaaccatcatggtgctgaagcatggagcaaagaggggcatatgatgacatgtcgcatcgcgcagggcttgttgaatgatgaggcagctcatgcagtcaagatgttgttgccggaatatgttaacggcgacttatcggccctctgtgtgtggccggatcaagtccggcactggtataagtataaatggacaagccctctacacttcattgatacaccagataaagcttgcaactttgattatgaaagggactgtcatgatcaacatggagtgaaggatatgtgtgttgctggtgcaattcagaactttactactcaactctctcattacagagagggaacttctgatcgtcgatataatatgacagaggccttgctgttcttgtcacattttatgggagatatccatcaaccaatgcatgttggctttacaagtgatgctggaggaaatagtattgatttacgctggtttaggcataaatcgaacttgcaccatgtgtgggatagggagataattctaacagctgctaaagactactatgcaaaggatgtaaacctccttgaagaagacattgaaggaaacttcactgacggaattggtctgatgatcttgcttcttggagagaatgtggcaatgtcttttctttgtgtaaacaagtttgcaacggacagtataaatatagcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="96947" stop="94857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96647" g_stop="96519" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96518" i_stop="96446" i_length="73">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96445" g_stop="96265" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96264" i_stop="96167" i_length="98">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96166" g_stop="96059" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="419" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96058" i_stop="95978" i_length="81">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95977" g_stop="95922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="475" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95921" i_stop="95818" i_length="104">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95817" g_stop="95734" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="559" r_length="84" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95733" i_stop="95610" i_length="124">
            <donor d_prob="0.934" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95609" g_stop="95514" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="655" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95513" i_stop="95390" i_length="124">
            <donor d_prob="0.881" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95389" g_stop="95325" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="720" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95324" i_stop="95188" i_length="137">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95187" g_stop="95157" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="751" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E589782" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96647" e_stop="96519"/>
          <exon e_start="96445" e_stop="96265"/>
          <exon e_start="96166" e_stop="96059"/>
          <exon e_start="95977" e_stop="95922"/>
          <exon e_start="95817" e_stop="95734"/>
          <exon e_start="95609" e_stop="95514"/>
          <exon e_start="95389" e_stop="95325"/>
          <exon e_start="95187" e_stop="95157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTGA-GAATGTTGAGGTTAACTTCATTAAGCAGTATTTTCTTTCTCTGTGTTGCTTTTATCAACCAACATGGTGTTGAAGCATGGAGCAAAGAGGGGCATGTGATGACTTGTCGAATCGCGCAGGTATATATTTATTTGAAAAATGTTTTTTTTTTTTTTGGCTTCAAATTATAAGAACTATTGCATGTGGAAACAGGGCTTGTTGAATGATGAGGCAGCTCATGCAGTCAAGATGTTGTTGCCGGAATATGTTAACGGTGACTTATCGGCCCTCTGTGTGTGGCCAGACCAAGTCAGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAAGTAAGTCAAATGCATCCAAAAAACGCGATGTATTTATTCTCTCTTTTCACAATTTGATCCTATAATTCATAATGTTTCTTTTTTTGTATGATGAGAAGGGGACTGTCATGATCAACATGGAGTAAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGATGTAAGGATCAAAAATGGTAAATTTCTTATATTGTATGGGGTGACTATCTTATGACACTATATAATTTGTCAATAATTACAGATAATATGACAGAGGCTTTGCTGTTTTTGTCACATTTCATGGGAGATATCCATCAAGTATGTACTCACTCTTTTTTTTTCACATTTGAAACGTTAAACAAATAGCAACCAATGTATGATTATTAGAAAAACTTGTTACCTTGTTGTTTTTGTGATTTCAGCCTATGCATGTTGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCATGTAAGTATATAACTTATCGAGTTTGATCCAAGATTTAAAGTTAATGCGTTCAAATTTGGCTATGATAGTAAGAAAAAAGATGATTAACGACGTATGTTTTCCTTTGTAAAAAATAATGTTATAGGTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGACGTAAGAGTCAATCTCTTAAACTTGTCAGAACATTTCATTTAGACATTCGAACCAAGTCATAAACTGTTCCAACTAGACATTTTCGGTTCAAATTTTGATTTTGTTAAATCTTATACATACTCAGGGAATTTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTC-TTGCGTAAACAAGTGAGTTCTTTCTCTATGTAAATCGGAAGTTGATTTTGAAACGACTAAACGTACGAAAACATATATACTTTGACTATGACTTCAATAGCGATTTTACACTTGGAGAAATTGATTAATTGTTGATGTGATGTTTTTAGGTTTGCAACGGAAAGTATAAATATAGCATGC</genome_strand>
        <mrna_strand>CTTCTTTTGANGGATGTTGAGGTTAACTTCATTAAGCATTATTTTCTTTCTCTGTCTTGCTTTTATCAACCATCATGGTGCTGAAGCATGGAGCAAAGAGGGGCATATGATGACATGTCGCATCGCGCAG.........................................................................GGCTTGTTGAATGATGAGGCAGCTCATGCAGTCAAGATGTTGTTGCCGGAATATGTTAACGGCGACTTATCGGCCCTCTGTGTGTGGCCGGATCAAGTCCGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAA..................................................................................................GGGACTGTCATGATCAACATGGAGTGAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGAT.................................................................................ATAATATGACAGAGGCCTTGCTGTTCTTGTCACATTTTATGGGAGATATCCATCAA........................................................................................................CCAATGCATGTTGGCTTTACAAGTGATGCTGGAGGAAATAGTATTGATTTACGCTGGTTTAGGCATAAATCGAACTTGCACCAT............................................................................................................................GTGTGGGATAGGGAGATAATTCTAACAGCTGCTAAAGACTACTATGCAAAGGATGTAAACCTCCTTGAAGAAGACATTGAAGGAAACTTCACTGAC............................................................................................................................GGAA-TTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTTGTGTAAACAA.........................................................................................................................................GTTTGCAACGGACAGTATAAATATAGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238083" ref_strand="+" ref_description="SGN-E238083 [cLED-22-A4]">
      <seq>caagtcaggcactggtataagtataaatggacaagccctctacacttcattgatacaccagataaagcttgcaactttgattatgaaagggactgtcatgatcaacatggagtaaaggatatgtgtgttgctggtgcaattcagaactttactactcaactctctcattacagagagggaacttctgatcgtcgatataatatgacagaggctttgctgtttttgtcacatttcatgggagatatccatcaacctatgcatgttggatttacaagtgatgctggaggaaattctattgatttgcgctggtttaggcataaatcaaacttgcaccatgtgtgggatagggagataatactaacagctgcaaaagactactatgcgaaggatataaacctccttgaagaagacattgaagggaacttcactgacggaatttggtctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="96652" stop="95074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96352" g_stop="96265" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96264" i_stop="96167" i_length="98">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96166" g_stop="96059" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="196" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96058" i_stop="95978" i_length="81">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95977" g_stop="95922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95921" i_stop="95818" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95817" g_stop="95734" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="336" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95733" i_stop="95610" i_length="124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95609" g_stop="95514" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="432" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95513" i_stop="95390" i_length="124">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95389" g_stop="95374" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="448" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E238083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96352" e_stop="96265"/>
          <exon e_start="96166" e_stop="96059"/>
          <exon e_start="95977" e_stop="95922"/>
          <exon e_start="95817" e_stop="95734"/>
          <exon e_start="95609" e_stop="95514"/>
          <exon e_start="95389" e_stop="95374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCAGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAAGTAAGTCAAATGCATCCAAAAAACGCGATGTATTTATTCTCTCTTTTCACAATTTGATCCTATAATTCATAATGTTTCTTTTTTTGTATGATGAGAAGGGGACTGTCATGATCAACATGGAGTAAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGATGTAAGGATCAAAAATGGTAAATTTCTTATATTGTATGGGGTGACTATCTTATGACACTATATAATTTGTCAATAATTACAGATAATATGACAGAGGCTTTGCTGTTTTTGTCACATTTCATGGGAGATATCCATCAAGTATGTACTCACTCTTTTTTTTTCACATTTGAAACGTTAAACAAATAGCAACCAATGTATGATTATTAGAAAAACTTGTTACCTTGTTGTTTTTGTGATTTCAGCCTATGCATGTTGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCATGTAAGTATATAACTTATCGAGTTTGATCCAAGATTTAAAGTTAATGCGTTCAAATTTGGCTATGATAGTAAGAAAAAAGATGATTAACGACGTATGTTTTCCTTTGTAAAAAATAATGTTATAGGTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGACGTAAGAGTCAATCTCTTAAACTTGTCAGAACATTTCATTTAGACATTCGAACCAAGTCATAAACTGTTCCAACTAGACATTTTCGGTTCAAATTTTGATTTTGTTAAATCTTATACATACTCAGGGAATTTGGTCTGATG</genome_strand>
        <mrna_strand>CAAGTCAGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAA..................................................................................................GGGACTGTCATGATCAACATGGAGTAAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGAT.................................................................................ATAATATGACAGAGGCTTTGCTGTTTTTGTCACATTTCATGGGAGATATCCATCAA........................................................................................................CCTATGCATGTTGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCAT............................................................................................................................GTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGAC............................................................................................................................GGAATTTGGTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266307" ref_strand="+" ref_description="SGN-E266307 [cLEI-3-J12]">
      <seq>tgttgtggagaagaggttggcacaaggtggggtccgcttggccgaagttctcaacagaattttcactaaaaaaccatcagatgctgcacaatgaagataaactgcagaagaaaaccactctatgtattcaattatccattataacttggaagtttccctcacgccaagaactgaaacctacttaagtgacttataagtcaactattgtattaaaatgggtgtaataaaatgttactttagatgcacaactagtccattattacatgatagatgctactatcatattggaatatgctgtatgttgcttttatggataatcaacctctattttactttttaagataagaggaatcttcagcttgtacacaacaagaaccatttcaacagtttttgtatatatagaacaagtccaagtttggtgggacacttccggttttcgatatctgtcaagttgtagaacttcttttgagaatgttgaggttaacttcattaagcagtattttctttctctgagttgcttttatcaaccaacatggtgttgaagcatggagcaaagaggggcatgtgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="97406" stop="96235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97106" g_stop="96535" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E266307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97106" e_stop="96535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGACACTTCCGGTTTTCGATATCTGTCAAGTTGTAGAACTTCTTTTGAGAATGTTGAGGTTAACTTCATTAAGCAGTATTTTCTTTCTCTGTGTTGCTTTTATCAACCAACATGGTGTTGAAGCATGGAGCAAAGAGGGGCATGTGATGAC</genome_strand>
        <mrna_strand>TGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGACACTTCCGGTTTTCGATATCTGTCAAGTTGTAGAACTTCTTTTGAGAATGTTGAGGTTAACTTCATTAAGCAGTATTTTCTTTCTCTGAGTTGCTTTTATCAACCAACATGGTGTTGAAGCATGGAGCAAAGAGGGGCATGTGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417372" ref_strand="-" ref_description="SGN-E417372 [STM-25-G10]">
      <seq>ggagatggtttgtcctgacccatatgcttctgaaagtatcagtttggcctgcaagtttgcctacagaaatgcaaccccgggaagcactttaacagacgattacttcctctctcgtcttcctgttgtggagaagaggttggcgcaaggtggggtccgcttggccgaagttctcaaccgaattttcactaaaaaaacatcagttgctgcacaatgaagataaactgcagaagaaaaccactatatgtattcaatttccattataacttgggagttcccttcacgtcaagaactgaaacctacataagtgacttataagtcaactattgtgtttaaaaaggtgtaataaaatgtaactttagatgcacaactagtccattattatatgatagatgctgctatcatattggaatatgctgtatgttgcttttatggataatcaacctctattttatttattaagatgagaggaatcttcagcttgtacacaacaaaaaccatttcaacattttgtatatatagaacaagcccaagtttggtgaccacttctggtttttgataaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="101998" stop="96386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101770" g_stop="101750" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101749" i_stop="101686" i_length="64">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101685" g_stop="101612" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="95" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101611" i_stop="97132" i_length="4480">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97131" g_stop="96655" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="568" r_length="473" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E417372" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101770" e_stop="101750"/>
          <exon e_start="101685" e_stop="101612"/>
          <exon e_start="97131" e_stop="96655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGTTTGTCCTGACCCGTAAGTGTATATATTCATACATACATAAAAAGAATGCACTATTTTGAGGAATTCGTTTTTACAGATATGCTTCTGAAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAGGTAAAAACCCTCACGTCCCTTATCCCTCTGAACAAATTTATACATCCAATATTCTATATATATACTCAAGCAAGAGAAACTGATAAGCAAAAGAGAAAGAAATTGAGAGGAAGAAACATGATTGGGAAAATTTAAAAAAAAAAAAGAGAGTTAGAAAGCAGAGTGCAAATCTGAGGGTTTAGGAAAAGAGTGTTCCGAGAATTGAGTAGAGTCGGAGGTTTTGTTTGCAGTTTCGAGTTCGTGTACCTGATTTGGAAATCTATAGATTGTACATTACGTTCCTTTGTTAATAGAAAGCAATTTGAAGGTTAGTTATCACCCTTACCTATTTTTTCGTAGAGTTAGGTAAGATATGTGTATAATGAGTTTCTCAAAGTAAAAAGTAACCAAAAAAAAAAAAGAGAGAGAAAGGAAGAGAGATAATTAAAAATTTATTTTACCATGTGTTTGTATTGTTTATGGGTGAATATTTTTTGTTATGGTTTCTATTTTTAGAGTTAAATTATAAAAAATTTAAGATGTACTTTTTCATCATATTAATATGCAAAAAGTTGTAATTTATAGTACTTTTCATATAGTTTTAAAATATCTAATTTTTTTGTTTAAAATATCGAATTAATGTGATCTAATTTAACTTTAAAGATTAGTCAAACTTTTGAAAAAGTGCAATATGAAAAACAATTTCGAATCAAGGGAATATTAATTATTGAAGTATGCTAAGAAATGAAGTTTTAAGCATAAAGAATGTTTCTAAACTTTAAAGTAACGTGAAAAACTAGTTTTTTTGTTTGTTTTGATTTCCAATCCATTCGGTCATTGCCCGAGCATATTCAATTGAGGCTATTGTTGTTTTTATAGTGTATAAATTTCTTAGAATTTGAATTTTGTACGGTATACAAAATATAAGTAATTTTACAAGTAAAATACAGTAACTTTCTTAAGTAATATTATTTACCTTTTTAAAACAAAACAAGTTACTACTAAAGAGTTGGTATTGGATAAAACATTTTCTTTTGTTTTACTGTAAAAAAAAATAAAAATCAAACTTTGCTCACCACTTTGATCTTTCATCAGAGCTATCATGATCATAGCTAAAATAGGTTTTTTACTCTTTAATAAAATAAGACAAATTTTAATGTGAATTTTAAAATAAATCAAAGAAATGGGACACAAGTAATTTCTAGGTTCATATGTATAATATATTTAAATATTAAGTCAAGTAATATATAAGTCAATAAAGCGATTTTATTAAAACTACGGGATTCCAATGATGTTTGATATTTTCTTCTCGGTCAATAGAATTTCTATCCAAAATTTTATTTCATAGACCAATAGAAGATAGAGTTAATTTTCTTTTTTCTTAACGATTTAAATTAAGTTACTTGAAATACCGAAAGTTAATTCTAAGTGGTGACTCTGAAATAAAATAATCCATTTTCAAAATAGTTATTTTAATTGGATATTTTTTCAAAATTTCATCGTTCTTTTAAGGGGTAAAAATCATCATGAAGAAGAGCCCATGATACCAAAACATGTTAATGATATAAGTTTTTTGAATTGTTACACATCAATCAAAACGAAATAGGTGGTGGTTGCCTTGATAATTATGAGTTCATTTAGAATTTTTATACATAAGATATGACTGAAAAGATGGGTTCGATTTATATGAAACGAGACTCTGTAATTATGATGTCTTTATAATATCTCTTTTAGGAATTATGATATTTCCAAAAAGAGAAGGAAAAATTAAAATAAATTTAGCTGCCGTCATTACAAATTTTGGGAAGAAGCCTTACATCACCCTTGAACAGATAGTTCTAGCATACATTTACCGTGCAGGAATGCTATATTTTATTGCAAATATGGATGATTGAGCACATTTGTTATTACCCTGTTATACTGAACTTCAAAGTAGATTGTAATGATTACATTGAGGGCCACAAGGAAAAAATAAAGATTAGATTTTTCCAAAGGACATTGAAAGCGGAAGATACTTCAATGTTGTAGCCACTGATAAGATTGTGTGAAATTATCATTGGTTCCCACCAGATGAGTTGATATACATGGGTCTTTGAGGTGTCCAGCCTTACATGCCGCTCAATAGTCATGTGGCAATTAGATCGATGTTGATTTTACGCTCAGCTTGATAAATACTGAAATGTTTTGCTCTTTCCTGTTTCATAAAAGCTTTTACTTGATTCTGAAGCCTAGATATGAGTGGGGTCTTTACTTTTTTAAACTTTTCCTGTTGTTGCGTCATAATACACAAGTCCTCTTGTAAGGTCAGAATGGTAGAAGATGTTCCTTCTCAACCCTTTTATCGAACCAACCTTACTCTAGATTCGAATGTTGGGTCAACTCTTCTTTAGGTCATTAGTTGAGACATCCAGAGTGAGTAGATCTATAATTTTCTTCAACCTCAAGTGGAGTTTGCTTGATTCTAACTTTTGTTTCTCGATCTATGGGTCCCTTCGCTGATCATTCTGACATAACCTTAGGGGGTGGTTGATCACGAAACCATCCTAAATATGAGTTGCCCGCCTCATCTTTGTCACGATCCTCCACCTTATCATGGGAACTTGAGAATATACTTTCTCCCAAAATCTTAAATATTTCTTATTCCCATTGAAGAGATCTTGAAACGAAACTCATACATGAATTCTTGCATATCTTCATTAAGAGGTAAAGCTGGTGCTGATCAAATTGCCGCATGACTCTGAGTGACATGTAAGACTGGACACCTCGAAGACCCCTTAGGACGATGAATGATAGACATGTATATCCCCTAGTTTGATAGGAACTAATGACAGTTCATCTTGTCAAAGCATTGAGGTATTTCTTTCAAGCTTCAATGTCCTTTGAAAAACTTTGATTTTTAATTCTTTTCTTGTGGCCCCAATGTAATCATTTCATTCTACTTTGAAGTTCACTACTTAAGGGTAATAACGAATGTGCTTATTCATCCACATTTGCAATAAGACATTGTATCCCTCAAAATAATCTTCTCCAGCCTTGTACCTTGTCAGAGTAGGTAAATGTTTGCTAGAACCTAGGTACGAGGGTGATGTTAGACTAACTGTCAAAAGTTGTAATGATTGTAGTCAAAATTATGTTGAACTTTCTTCCCCTTTTTTTGAAACACTATAATCCCAAAAAAGCTACTACAAAGACATCGTAACTGTGTGTTTTCCAGGTCAGGTGACACCCATCGTTGTGAAGTTTCGTTCCATATAAACCGAACTCATATTTTCAGCCATTTCTTTTGTATAAAAAGTCTAAAAGAACCCATATATTATTAAGGCAACCACCTATTTTGTTTTCATCGATGTACAACAACTCTAAAAACCTTTTACCATTAACATGATTTGGTATCATGGCTCTCTTTGTGAAGATTTTTACTCATTCCCATTAATAATGCGCCTATCTCTTTGAGAGTGGGGGTAAGTTGAAAGTTTGAAAAATGGAATGCATTATTTAACGAGTCCCAAAAATGTACTAGTTCTTCTATCAAATTCCTTTGTGGCTCAACAACAAGGCTTCATAAGAATCTCAAGCGTTTGAACACTATGCCTTTTTATAATTCGTCATATTTTCATATCATGTCCTTAAAAGTGTCGGGGCCTAATCCAAGGTCATTGATCATTCGTTAACCTCTTGTCTCCCTTTTCATATTAGCTCATATTTTCCTATAGGATGATGATACATTAGGACTTAACTATGTTTTAATTAAAATGGCTTTTTTTTTTGAAATAATAATTAAACAAAATAATAATCTTAGACTCGAGACAATCAAATTTTTTGAATAAGGATTTGATAGCGAACTTATTTTATAAAAAAAAAATGGACTTTATAGTACTCACAGTGTTTTCCTCCTATCATCCAATCATTTTTCCAAAATAATTTGAACTAATCTATAAAGTTGTGTCATTCTTGATTTCGTAATGTCTTTTTATCCCTTTTCTAATTAACTCTAAATCAATTAATATATAAAGTGTTAAAAAATCAGATTAAGAAAACGGATAGTAATAAAATTACTATCTTATTTTATTAAAATAAAAATATATTGTAATTAATTTCTTTTCATTTCTTTTTTCCTTTGAAAAAATTAATAAAACTTATACTTCAATGGGACTCTTTTCCTATAATTAATTTAGTTTTCATTATTGTAAACATGATCTTTAGATGGATCCATTTTCTTAACATTTCTTCCCTACAAATCAACAATCACCTATAAAATATACATGGAAAGCCAAGCTATGTACAGCTATGTTCTGTGTATATCAATAATTAGCTAACATTGAGAGAAGCCTCCATGTGCATCACAAAATATTACACAATATTGTATTCAATATATTTTCGGAAACAATTTCTCTACCTTCACGAGGTAATGGTAAAGTCTGTGTACACTTTTGCGGGATTTCAGCGGATATTTATTGTATTCAATGTATTTCTAATCTTCCATTATCTGTTTGTTTTCCAGACGATTACTTCCTCTCTCGTCTTCCTGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGACACTTCCGGTTTTCGATATCTGTCAAGT</genome_strand>
        <mrna_strand>GGAGATGGTTTGTCCTGACCC................................................................ATATGCTTCTGAAAGTATCAGTTTGGCCTGCAAGTTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTACTTCCTCTCTCGTCTTCCTGTTGTGGAGAAGAGGTTGGCGCAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACCGAATTTTCACTAAAAAAACATCAGTTGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTATATGTATTCAATT-TCCATTATAACTTGGGAGTTCCCTTCACGTCAAGAACTGAAACCTACATAAGTGACTTATAAGTCAACTATTGTGTTTAAAAAGGTGTAATAAAATGTAACTTTAGATGCACAACTAGTCCATTATTATATGATAGATGCTGCTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTATTTATTAAGATGAGAGGAATCTTCAGCTTGTACACAACAAAAACCATTTCAACA--TTTTGTATATATAGAACAAGCCCAAGTTTGGT-GACCACTTCTGGTTTTTGATAAAAAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308802" ref_strand="+" ref_description="SGN-E308802 [cLEZ-14-P11]">
      <seq>gccgaagttctcaacagaattttgactaaaaaaccatcagatgctgcacaatgaagataaactgcagaagaaaaccactctatgtattcaattatccattataacttggaagtttccctcacgccaagaactgaaacctacttaagtgacttataagtcaactattgtattaaaatgggtgtaataaaatgttactttagatgcacaactagtccattattacatgatagatgctactatcatattggaatatgctgtatgttgcttttatggataatcaacctctattttactttttaagataagaggaatcttcagcttgtacacaacaagaaccatttcaacagtttttgtatatatagaacaagtccaagtttggtgggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="97366" stop="96381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97066" g_stop="96675" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E308802" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97066" e_stop="96675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGACACTTCCG</genome_strand>
        <mrna_strand>GCCGAAGTTCTCAACAGAATTTTGACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713853" ref_strand="+" ref_description="SGN-E713853 [FB09DD03]">
      <seq>caaatctgatatactgttaatgacacaagttcttctgaaaaacatcactcatgaatggtccgatgatgttccatcttgggaagattgcaaggagatggtttgtcctgacccatatgcttctgaaagtatccgtttggcctgcaaatttgcctacagaaatgcaaccccgggaagcactttaacagacgattacttcctctctcgtcttcctgttgtggagaagaggttggcacaaggtggggtccgcttggccgaagttctcaacagaattttcactaaaaaaccatcagatgctgcacaatgaagataaactgcagaagaaaaccactctatgtattcaattatccattataacttggaagtttccctcacgccaagaactgaaacctacttaagtgacttataagtcaactattgtattaaaatgggtgtaataaaatgttactttagatgcacaactagtccattattacatgatagatgctactatcatattggaatatgctgtatgttgcttttatggataatcaacctctattttactttttaagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="102668" stop="96456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102368" g_stop="102320" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102319" i_stop="101812" i_length="508">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101811" g_stop="101750" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="111" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101749" i_stop="101686" i_length="64">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101685" g_stop="101612" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="185" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101611" i_stop="97132" i_length="4480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97131" g_stop="96754" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="563" r_length="378" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E713853" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102368" e_stop="102320"/>
          <exon e_start="101811" e_stop="101750"/>
          <exon e_start="101685" e_stop="101612"/>
          <exon e_start="97131" e_stop="96754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTGATATAATGTTAATGACACAAGTTCTTCTGAAAAACATCACTGTAAGTTTTAGTTGTTTTCTTCATTCACAGTATTACATATCCATTTCTTAGAGATCTGAACTTTACAATTCTTCAAGTGATGTTGGAAAATTGTTAAATGATGCATGAATATTGTGGGAGGATTTCATCATCCCATTGCCACAGTGCTCATTGGAAAGAATCTCACTGTCTTGTGTTCTCTTAAAGAAAATATTACTATGGTCGTAGCATAAATAGCAGTTAAAATCTGCCTCACATGGATTCCACTTTCCGATCCAGCAAGATGTAACAAATTGTTTTTCCTAGCTTATGCAGAAAATCTTTCTTCAATTATATGTGACATTGCAAGTTTCTTTTTGTTTTGGATGCATAAATAGCACCAACTCCTGAACTTGTTAAGCTTTAAAACCATTCAGTTTTAGTATGTCTATTTCACTAGCTTCTCAAGACTCGTGTGCATCCTGTCATTTCTTCTATTCTCTGTATTCCCATAATCACTTGTAACTAATGTACTTGTATCTGGATACAGCATGAATGGTCCGATGATGTTCCATCTTGGGAAGATTGCAAGGAGATGGTTTGTCCTGACCCGTAAGTGTATATATTCATACATACATAAAAAGAATGCACTATTTTGAGGAATTCGTTTTTACAGATATGCTTCTGAAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAGGTAAAAACCCTCACGTCCCTTATCCCTCTGAACAAATTTATACATCCAATATTCTATATATATACTCAAGCAAGAGAAACTGATAAGCAAAAGAGAAAGAAATTGAGAGGAAGAAACATGATTGGGAAAATTTAAAAAAAAAAAAGAGAGTTAGAAAGCAGAGTGCAAATCTGAGGGTTTAGGAAAAGAGTGTTCCGAGAATTGAGTAGAGTCGGAGGTTTTGTTTGCAGTTTCGAGTTCGTGTACCTGATTTGGAAATCTATAGATTGTACATTACGTTCCTTTGTTAATAGAAAGCAATTTGAAGGTTAGTTATCACCCTTACCTATTTTTTCGTAGAGTTAGGTAAGATATGTGTATAATGAGTTTCTCAAAGTAAAAAGTAACCAAAAAAAAAAAAGAGAGAGAAAGGAAGAGAGATAATTAAAAATTTATTTTACCATGTGTTTGTATTGTTTATGGGTGAATATTTTTTGTTATGGTTTCTATTTTTAGAGTTAAATTATAAAAAATTTAAGATGTACTTTTTCATCATATTAATATGCAAAAAGTTGTAATTTATAGTACTTTTCATATAGTTTTAAAATATCTAATTTTTTTGTTTAAAATATCGAATTAATGTGATCTAATTTAACTTTAAAGATTAGTCAAACTTTTGAAAAAGTGCAATATGAAAAACAATTTCGAATCAAGGGAATATTAATTATTGAAGTATGCTAAGAAATGAAGTTTTAAGCATAAAGAATGTTTCTAAACTTTAAAGTAACGTGAAAAACTAGTTTTTTTGTTTGTTTTGATTTCCAATCCATTCGGTCATTGCCCGAGCATATTCAATTGAGGCTATTGTTGTTTTTATAGTGTATAAATTTCTTAGAATTTGAATTTTGTACGGTATACAAAATATAAGTAATTTTACAAGTAAAATACAGTAACTTTCTTAAGTAATATTATTTACCTTTTTAAAACAAAACAAGTTACTACTAAAGAGTTGGTATTGGATAAAACATTTTCTTTTGTTTTACTGTAAAAAAAAATAAAAATCAAACTTTGCTCACCACTTTGATCTTTCATCAGAGCTATCATGATCATAGCTAAAATAGGTTTTTTACTCTTTAATAAAATAAGACAAATTTTAATGTGAATTTTAAAATAAATCAAAGAAATGGGACACAAGTAATTTCTAGGTTCATATGTATAATATATTTAAATATTAAGTCAAGTAATATATAAGTCAATAAAGCGATTTTATTAAAACTACGGGATTCCAATGATGTTTGATATTTTCTTCTCGGTCAATAGAATTTCTATCCAAAATTTTATTTCATAGACCAATAGAAGATAGAGTTAATTTTCTTTTTTCTTAACGATTTAAATTAAGTTACTTGAAATACCGAAAGTTAATTCTAAGTGGTGACTCTGAAATAAAATAATCCATTTTCAAAATAGTTATTTTAATTGGATATTTTTTCAAAATTTCATCGTTCTTTTAAGGGGTAAAAATCATCATGAAGAAGAGCCCATGATACCAAAACATGTTAATGATATAAGTTTTTTGAATTGTTACACATCAATCAAAACGAAATAGGTGGTGGTTGCCTTGATAATTATGAGTTCATTTAGAATTTTTATACATAAGATATGACTGAAAAGATGGGTTCGATTTATATGAAACGAGACTCTGTAATTATGATGTCTTTATAATATCTCTTTTAGGAATTATGATATTTCCAAAAAGAGAAGGAAAAATTAAAATAAATTTAGCTGCCGTCATTACAAATTTTGGGAAGAAGCCTTACATCACCCTTGAACAGATAGTTCTAGCATACATTTACCGTGCAGGAATGCTATATTTTATTGCAAATATGGATGATTGAGCACATTTGTTATTACCCTGTTATACTGAACTTCAAAGTAGATTGTAATGATTACATTGAGGGCCACAAGGAAAAAATAAAGATTAGATTTTTCCAAAGGACATTGAAAGCGGAAGATACTTCAATGTTGTAGCCACTGATAAGATTGTGTGAAATTATCATTGGTTCCCACCAGATGAGTTGATATACATGGGTCTTTGAGGTGTCCAGCCTTACATGCCGCTCAATAGTCATGTGGCAATTAGATCGATGTTGATTTTACGCTCAGCTTGATAAATACTGAAATGTTTTGCTCTTTCCTGTTTCATAAAAGCTTTTACTTGATTCTGAAGCCTAGATATGAGTGGGGTCTTTACTTTTTTAAACTTTTCCTGTTGTTGCGTCATAATACACAAGTCCTCTTGTAAGGTCAGAATGGTAGAAGATGTTCCTTCTCAACCCTTTTATCGAACCAACCTTACTCTAGATTCGAATGTTGGGTCAACTCTTCTTTAGGTCATTAGTTGAGACATCCAGAGTGAGTAGATCTATAATTTTCTTCAACCTCAAGTGGAGTTTGCTTGATTCTAACTTTTGTTTCTCGATCTATGGGTCCCTTCGCTGATCATTCTGACATAACCTTAGGGGGTGGTTGATCACGAAACCATCCTAAATATGAGTTGCCCGCCTCATCTTTGTCACGATCCTCCACCTTATCATGGGAACTTGAGAATATACTTTCTCCCAAAATCTTAAATATTTCTTATTCCCATTGAAGAGATCTTGAAACGAAACTCATACATGAATTCTTGCATATCTTCATTAAGAGGTAAAGCTGGTGCTGATCAAATTGCCGCATGACTCTGAGTGACATGTAAGACTGGACACCTCGAAGACCCCTTAGGACGATGAATGATAGACATGTATATCCCCTAGTTTGATAGGAACTAATGACAGTTCATCTTGTCAAAGCATTGAGGTATTTCTTTCAAGCTTCAATGTCCTTTGAAAAACTTTGATTTTTAATTCTTTTCTTGTGGCCCCAATGTAATCATTTCATTCTACTTTGAAGTTCACTACTTAAGGGTAATAACGAATGTGCTTATTCATCCACATTTGCAATAAGACATTGTATCCCTCAAAATAATCTTCTCCAGCCTTGTACCTTGTCAGAGTAGGTAAATGTTTGCTAGAACCTAGGTACGAGGGTGATGTTAGACTAACTGTCAAAAGTTGTAATGATTGTAGTCAAAATTATGTTGAACTTTCTTCCCCTTTTTTTGAAACACTATAATCCCAAAAAAGCTACTACAAAGACATCGTAACTGTGTGTTTTCCAGGTCAGGTGACACCCATCGTTGTGAAGTTTCGTTCCATATAAACCGAACTCATATTTTCAGCCATTTCTTTTGTATAAAAAGTCTAAAAGAACCCATATATTATTAAGGCAACCACCTATTTTGTTTTCATCGATGTACAACAACTCTAAAAACCTTTTACCATTAACATGATTTGGTATCATGGCTCTCTTTGTGAAGATTTTTACTCATTCCCATTAATAATGCGCCTATCTCTTTGAGAGTGGGGGTAAGTTGAAAGTTTGAAAAATGGAATGCATTATTTAACGAGTCCCAAAAATGTACTAGTTCTTCTATCAAATTCCTTTGTGGCTCAACAACAAGGCTTCATAAGAATCTCAAGCGTTTGAACACTATGCCTTTTTATAATTCGTCATATTTTCATATCATGTCCTTAAAAGTGTCGGGGCCTAATCCAAGGTCATTGATCATTCGTTAACCTCTTGTCTCCCTTTTCATATTAGCTCATATTTTCCTATAGGATGATGATACATTAGGACTTAACTATGTTTTAATTAAAATGGCTTTTTTTTTTGAAATAATAATTAAACAAAATAATAATCTTAGACTCGAGACAATCAAATTTTTTGAATAAGGATTTGATAGCGAACTTATTTTATAAAAAAAAAATGGACTTTATAGTACTCACAGTGTTTTCCTCCTATCATCCAATCATTTTTCCAAAATAATTTGAACTAATCTATAAAGTTGTGTCATTCTTGATTTCGTAATGTCTTTTTATCCCTTTTCTAATTAACTCTAAATCAATTAATATATAAAGTGTTAAAAAATCAGATTAAGAAAACGGATAGTAATAAAATTACTATCTTATTTTATTAAAATAAAAATATATTGTAATTAATTTCTTTTCATTTCTTTTTTCCTTTGAAAAAATTAATAAAACTTATACTTCAATGGGACTCTTTTCCTATAATTAATTTAGTTTTCATTATTGTAAACATGATCTTTAGATGGATCCATTTTCTTAACATTTCTTCCCTACAAATCAACAATCACCTATAAAATATACATGGAAAGCCAAGCTATGTACAGCTATGTTCTGTGTATATCAATAATTAGCTAACATTGAGAGAAGCCTCCATGTGCATCACAAAATATTACACAATATTGTATTCAATATATTTTCGGAAACAATTTCTCTACCTTCACGAGGTAATGGTAAAGTCTGTGTACACTTTTGCGGGATTTCAGCGGATATTTATTGTATTCAATGTATTTCTAATCTTCCATTATCTGTTTGTTTTCCAGACGATTACTTCCTCTCTCGTCTTCCTGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATC</genome_strand>
        <mrna_strand>CAAATCTGATATACTGTTAATGACACAAGTTCTTCTGAAAAACATCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAATGGTCCGATGATGTTCCATCTTGGGAAGATTGCAAGGAGATGGTTTGTCCTGACCC................................................................ATATGCTTCTGAAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTACTTCCTCTCTCGTCTTCCTGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702346" ref_strand="+" ref_description="SGN-E702346 [FA18BH05]">
      <seq>gtttattccacctcaaaaattattgtcattcttggatcttgaaccaccaaaacaacccctagctactggttgagtaatttgattggaaaagatgggtgggtttgagctcaaatggtttgtaggagtagctgttgttctgatgatggttcaaaatattcttggttgggggaaagagggacactatattatctgcaaaattgctgaggaatatctaacagaagatgctttagctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccactaccactaccgctggagctctccattacattatgtagatacacctgatttcttgtgcaattacaaatattgccgagactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaaaaatacaacttgactgaagcacttatgttcttgtctcattttgttggtgacgtacatcagcctctccatgttggtttcactggagatcttggtggaaacagtataattgttcgttggtacaggaggaagactaatttgcaccatgtatgggataacatgattattgaatctgcgttgaagacatactacaaatctgatataatgttaatgacacaagttcttctgaaaaacatcactcatgaatggtccgatgatgttccatcttgggaagattgcaaggagatggtttgtcctgacccatatgcttctgnaagtatccgtttggcctgcaaatttgcctacagaaatgcaaccccgggaagcactttaacagacgattacttcctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106510" stop="96815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106210" g_stop="106143" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="205" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="386" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="494" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="550" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="634" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102830" i_stop="102413" i_length="418">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102412" g_stop="102320" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="727" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102319" i_stop="101812" i_length="508">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101811" g_stop="101750" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="789" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="101749" i_stop="101686" i_length="64">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="101685" g_stop="101612" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="790" r_stop="863" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="101611" i_stop="97132" i_length="4480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="97131" g_stop="97115" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="880" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E702346" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106210" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102831"/>
          <exon e_start="102412" e_stop="102320"/>
          <exon e_start="101811" e_stop="101750"/>
          <exon e_start="101685" e_stop="101612"/>
          <exon e_start="97131" e_stop="97115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAGGTTGTGCGTTTCTTTGAGTTCCAATTCATTCTGATCTCATTCTTTTGGATCACTAAACAAAATTGTTGAAGTGTAACATCTTCGAGCAGACTTATTCACTTCATGTTACCATTAACTATACCAAGTGTCTATAATATATAGTCCTTTTCATTTGAAATATATTTAGATAATACCTTCTTTCTAACTCTCAAATTACGTATTCAATTTTCTCTACTTTGAAAACAAATGGAAAGTTCTGAGCATGTTTACCTCTAATCTTTCACCTGTCAAGAATACTTGAGAAGTAGTATATACTATATACATCTTAAACTGTATGCGTACAGGTGAAGGGTGTAAATTATTTAATGTGAGGCACACACAAATCAGATATCTATTAGAACCAGCCACTGTAACTTCTTGACTTAAAATTTTCAGGTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAATGTTAATGACACAAGTTCTTCTGAAAAACATCACTGTAAGTTTTAGTTGTTTTCTTCATTCACAGTATTACATATCCATTTCTTAGAGATCTGAACTTTACAATTCTTCAAGTGATGTTGGAAAATTGTTAAATGATGCATGAATATTGTGGGAGGATTTCATCATCCCATTGCCACAGTGCTCATTGGAAAGAATCTCACTGTCTTGTGTTCTCTTAAAGAAAATATTACTATGGTCGTAGCATAAATAGCAGTTAAAATCTGCCTCACATGGATTCCACTTTCCGATCCAGCAAGATGTAACAAATTGTTTTTCCTAGCTTATGCAGAAAATCTTTCTTCAATTATATGTGACATTGCAAGTTTCTTTTTGTTTTGGATGCATAAATAGCACCAACTCCTGAACTTGTTAAGCTTTAAAACCATTCAGTTTTAGTATGTCTATTTCACTAGCTTCTCAAGACTCGTGTGCATCCTGTCATTTCTTCTATTCTCTGTATTCCCATAATCACTTGTAACTAATGTACTTGTATCTGGATACAGCATGAATGGTCCGATGATGTTCCATCTTGGGAAGATTGCAAGGAGATGGTTTGTCCTGACCCGTAAGTGTATATATTCATACATACATAAAAAGAATGCACTATTTTGAGGAATTCGTTTTTACAGATATGCTTCTGAAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAGGTAAAAACCCTCACGTCCCTTATCCCTCTGAACAAATTTATACATCCAATATTCTATATATATACTCAAGCAAGAGAAACTGATAAGCAAAAGAGAAAGAAATTGAGAGGAAGAAACATGATTGGGAAAATTTAAAAAAAAAAAAGAGAGTTAGAAAGCAGAGTGCAAATCTGAGGGTTTAGGAAAAGAGTGTTCCGAGAATTGAGTAGAGTCGGAGGTTTTGTTTGCAGTTTCGAGTTCGTGTACCTGATTTGGAAATCTATAGATTGTACATTACGTTCCTTTGTTAATAGAAAGCAATTTGAAGGTTAGTTATCACCCTTACCTATTTTTTCGTAGAGTTAGGTAAGATATGTGTATAATGAGTTTCTCAAAGTAAAAAGTAACCAAAAAAAAAAAAGAGAGAGAAAGGAAGAGAGATAATTAAAAATTTATTTTACCATGTGTTTGTATTGTTTATGGGTGAATATTTTTTGTTATGGTTTCTATTTTTAGAGTTAAATTATAAAAAATTTAAGATGTACTTTTTCATCATATTAATATGCAAAAAGTTGTAATTTATAGTACTTTTCATATAGTTTTAAAATATCTAATTTTTTTGTTTAAAATATCGAATTAATGTGATCTAATTTAACTTTAAAGATTAGTCAAACTTTTGAAAAAGTGCAATATGAAAAACAATTTCGAATCAAGGGAATATTAATTATTGAAGTATGCTAAGAAATGAAGTTTTAAGCATAAAGAATGTTTCTAAACTTTAAAGTAACGTGAAAAACTAGTTTTTTTGTTTGTTTTGATTTCCAATCCATTCGGTCATTGCCCGAGCATATTCAATTGAGGCTATTGTTGTTTTTATAGTGTATAAATTTCTTAGAATTTGAATTTTGTACGGTATACAAAATATAAGTAATTTTACAAGTAAAATACAGTAACTTTCTTAAGTAATATTATTTACCTTTTTAAAACAAAACAAGTTACTACTAAAGAGTTGGTATTGGATAAAACATTTTCTTTTGTTTTACTGTAAAAAAAAATAAAAATCAAACTTTGCTCACCACTTTGATCTTTCATCAGAGCTATCATGATCATAGCTAAAATAGGTTTTTTACTCTTTAATAAAATAAGACAAATTTTAATGTGAATTTTAAAATAAATCAAAGAAATGGGACACAAGTAATTTCTAGGTTCATATGTATAATATATTTAAATATTAAGTCAAGTAATATATAAGTCAATAAAGCGATTTTATTAAAACTACGGGATTCCAATGATGTTTGATATTTTCTTCTCGGTCAATAGAATTTCTATCCAAAATTTTATTTCATAGACCAATAGAAGATAGAGTTAATTTTCTTTTTTCTTAACGATTTAAATTAAGTTACTTGAAATACCGAAAGTTAATTCTAAGTGGTGACTCTGAAATAAAATAATCCATTTTCAAAATAGTTATTTTAATTGGATATTTTTTCAAAATTTCATCGTTCTTTTAAGGGGTAAAAATCATCATGAAGAAGAGCCCATGATACCAAAACATGTTAATGATATAAGTTTTTTGAATTGTTACACATCAATCAAAACGAAATAGGTGGTGGTTGCCTTGATAATTATGAGTTCATTTAGAATTTTTATACATAAGATATGACTGAAAAGATGGGTTCGATTTATATGAAACGAGACTCTGTAATTATGATGTCTTTATAATATCTCTTTTAGGAATTATGATATTTCCAAAAAGAGAAGGAAAAATTAAAATAAATTTAGCTGCCGTCATTACAAATTTTGGGAAGAAGCCTTACATCACCCTTGAACAGATAGTTCTAGCATACATTTACCGTGCAGGAATGCTATATTTTATTGCAAATATGGATGATTGAGCACATTTGTTATTACCCTGTTATACTGAACTTCAAAGTAGATTGTAATGATTACATTGAGGGCCACAAGGAAAAAATAAAGATTAGATTTTTCCAAAGGACATTGAAAGCGGAAGATACTTCAATGTTGTAGCCACTGATAAGATTGTGTGAAATTATCATTGGTTCCCACCAGATGAGTTGATATACATGGGTCTTTGAGGTGTCCAGCCTTACATGCCGCTCAATAGTCATGTGGCAATTAGATCGATGTTGATTTTACGCTCAGCTTGATAAATACTGAAATGTTTTGCTCTTTCCTGTTTCATAAAAGCTTTTACTTGATTCTGAAGCCTAGATATGAGTGGGGTCTTTACTTTTTTAAACTTTTCCTGTTGTTGCGTCATAATACACAAGTCCTCTTGTAAGGTCAGAATGGTAGAAGATGTTCCTTCTCAACCCTTTTATCGAACCAACCTTACTCTAGATTCGAATGTTGGGTCAACTCTTCTTTAGGTCATTAGTTGAGACATCCAGAGTGAGTAGATCTATAATTTTCTTCAACCTCAAGTGGAGTTTGCTTGATTCTAACTTTTGTTTCTCGATCTATGGGTCCCTTCGCTGATCATTCTGACATAACCTTAGGGGGTGGTTGATCACGAAACCATCCTAAATATGAGTTGCCCGCCTCATCTTTGTCACGATCCTCCACCTTATCATGGGAACTTGAGAATATACTTTCTCCCAAAATCTTAAATATTTCTTATTCCCATTGAAGAGATCTTGAAACGAAACTCATACATGAATTCTTGCATATCTTCATTAAGAGGTAAAGCTGGTGCTGATCAAATTGCCGCATGACTCTGAGTGACATGTAAGACTGGACACCTCGAAGACCCCTTAGGACGATGAATGATAGACATGTATATCCCCTAGTTTGATAGGAACTAATGACAGTTCATCTTGTCAAAGCATTGAGGTATTTCTTTCAAGCTTCAATGTCCTTTGAAAAACTTTGATTTTTAATTCTTTTCTTGTGGCCCCAATGTAATCATTTCATTCTACTTTGAAGTTCACTACTTAAGGGTAATAACGAATGTGCTTATTCATCCACATTTGCAATAAGACATTGTATCCCTCAAAATAATCTTCTCCAGCCTTGTACCTTGTCAGAGTAGGTAAATGTTTGCTAGAACCTAGGTACGAGGGTGATGTTAGACTAACTGTCAAAAGTTGTAATGATTGTAGTCAAAATTATGTTGAACTTTCTTCCCCTTTTTTTGAAACACTATAATCCCAAAAAAGCTACTACAAAGACATCGTAACTGTGTGTTTTCCAGGTCAGGTGACACCCATCGTTGTGAAGTTTCGTTCCATATAAACCGAACTCATATTTTCAGCCATTTCTTTTGTATAAAAAGTCTAAAAGAACCCATATATTATTAAGGCAACCACCTATTTTGTTTTCATCGATGTACAACAACTCTAAAAACCTTTTACCATTAACATGATTTGGTATCATGGCTCTCTTTGTGAAGATTTTTACTCATTCCCATTAATAATGCGCCTATCTCTTTGAGAGTGGGGGTAAGTTGAAAGTTTGAAAAATGGAATGCATTATTTAACGAGTCCCAAAAATGTACTAGTTCTTCTATCAAATTCCTTTGTGGCTCAACAACAAGGCTTCATAAGAATCTCAAGCGTTTGAACACTATGCCTTTTTATAATTCGTCATATTTTCATATCATGTCCTTAAAAGTGTCGGGGCCTAATCCAAGGTCATTGATCATTCGTTAACCTCTTGTCTCCCTTTTCATATTAGCTCATATTTTCCTATAGGATGATGATACATTAGGACTTAACTATGTTTTAATTAAAATGGCTTTTTTTTTTGAAATAATAATTAAACAAAATAATAATCTTAGACTCGAGACAATCAAATTTTTTGAATAAGGATTTGATAGCGAACTTATTTTATAAAAAAAAAATGGACTTTATAGTACTCACAGTGTTTTCCTCCTATCATCCAATCATTTTTCCAAAATAATTTGAACTAATCTATAAAGTTGTGTCATTCTTGATTTCGTAATGTCTTTTTATCCCTTTTCTAATTAACTCTAAATCAATTAATATATAAAGTGTTAAAAAATCAGATTAAGAAAACGGATAGTAATAAAATTACTATCTTATTTTATTAAAATAAAAATATATTGTAATTAATTTCTTTTCATTTCTTTTTTCCTTTGAAAAAATTAATAAAACTTATACTTCAATGGGACTCTTTTCCTATAATTAATTTAGTTTTCATTATTGTAAACATGATCTTTAGATGGATCCATTTTCTTAACATTTCTTCCCTACAAATCAACAATCACCTATAAAATATACATGGAAAGCCAAGCTATGTACAGCTATGTTCTGTGTATATCAATAATTAGCTAACATTGAGAGAAGCCTCCATGTGCATCACAAAATATTACACAATATTGTATTCAATATATTTTCGGAAACAATTTCTCTACCTTCACGAGGTAATGGTAAAGTCTGTGTACACTTTTGCGGGATTTCAGCGGATATTTATTGTATTCAATGTATTTCTAATCTTCCATTATCTGTTTGTTTTCCAGACGATTACTTCCTCTCT</genome_strand>
        <mrna_strand>GTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTG........................................................................................GTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT.....................................................................ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAATGTTAATGACACAAGTTCTTCTGAAAAACATCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAATGGTCCGATGATGTTCCATCTTGGGAAGATTGCAAGGAGATGGTTTGTCCTGACCC................................................................ATATGCTTCTGNAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTACTTCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573819" ref_strand="+" ref_description="SGN-E573819 [33190]">
      <seq>tcacctcanaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaaaaatacaacttgactgaagcacttatgttcttgtctcattttattggtgatgtacatcagcctcttcatgttggtttcactggagatcttggtggaaacagtataatcgttcgttggtacaggaggaagactaatttgcaccatgtatgggataccatgattattgaatctgcgttaaagacatactataaatctgatataatgttaactgacacaagctcttctgaaaaaacatcactggtgaatggtcngatgatgttccatcttggggaaaatttggaaggagatggttgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106502" stop="101453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106203" g_stop="106143" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="198" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="379" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="487" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="543" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="627" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102830" i_stop="102413" i_length="418">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102412" g_stop="102320" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="722" r_length="95" r_score="0.914"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="102319" i_stop="101812" i_length="508">
            <donor d_prob="0.941" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="101811" g_stop="101763" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="773" r_length="51" r_score="0.816"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E573819" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106203" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102831"/>
          <exon e_start="102412" e_stop="102320"/>
          <exon e_start="101811" e_stop="101763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAGGTTGTGCGTTTCTTTGAGTTCCAATTCATTCTGATCTCATTCTTTTGGATCACTAAACAAAATTGTTGAAGTGTAACATCTTCGAGCAGACTTATTCACTTCATGTTACCATTAACTATACCAAGTGTCTATAATATATAGTCCTTTTCATTTGAAATATATTTAGATAATACCTTCTTTCTAACTCTCAAATTACGTATTCAATTTTCTCTACTTTGAAAACAAATGGAAAGTTCTGAGCATGTTTACCTCTAATCTTTCACCTGTCAAGAATACTTGAGAAGTAGTATATACTATATACATCTTAAACTGTATGCGTACAGGTGAAGGGTGTAAATTATTTAATGTGAGGCACACACAAATCAGATATCTATTAGAACCAGCCACTGTAACTTCTTGACTTAAAATTTTCAGGTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAATGTTAA-TGACACAAGTTCTTCTG-AAAAACATCACTGTAAGTTTTAGTTGTTTTCTTCATTCACAGTATTACATATCCATTTCTTAGAGATCTGAACTTTACAATTCTTCAAGTGATGTTGGAAAATTGTTAAATGATGCATGAATATTGTGGGAGGATTTCATCATCCCATTGCCACAGTGCTCATTGGAAAGAATCTCACTGTCTTGTGTTCTCTTAAAGAAAATATTACTATGGTCGTAGCATAAATAGCAGTTAAAATCTGCCTCACATGGATTCCACTTTCCGATCCAGCAAGATGTAACAAATTGTTTTTCCTAGCTTATGCAGAAAATCTTTCTTCAATTATATGTGACATTGCAAGTTTCTTTTTGTTTTGGATGCATAAATAGCACCAACTCCTGAACTTGTTAAGCTTTAAAACCATTCAGTTTTAGTATGTCTATTTCACTAGCTTCTCAAGACTCGTGTGCATCCTGTCATTTCTTCTATTCTCTGTATTCCCATAATCACTTGTAACTAATGTACTTGTATCTGGATACAGCATGAATGGTCCGATGATGTTCCATCTT-GGGAAGA-TTGCAAGGAGATGG</genome_strand>
        <mrna_strand>TCACCTCANAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT.....................................................................ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTATTGGTGATGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATCGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATACCATGATTATTGAATCTGCGTTAAAGACATACTATAAATCTGATATAATGTTAACTGACACAAGCTCTTCTGAAAAAACATCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATGGTCNGATGATGTTCCATCTTGGGGAAAATTTGGAAGGAGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559691" ref_strand="+" ref_description="SGN-E559691 [19229]">
      <seq>gtttattccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgcaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaaaaatacaattgactgaagcacttatgttcttgtctcattttattggtgatgtacatcagcctcttcatgttggtttcactggagatcttggtggaaacagtataatcgttcgttggtacaggaggaagactaatttgcaccatgtatgggataccatgattattgaatctggttaaagacatactataaatctgatataatgttaatgacacaagctcttctgaaaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106510" stop="102023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106210" g_stop="106143" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="205" r_length="137" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="386" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="494" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="549" r_length="55" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="633" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102830" i_stop="102413" i_length="418">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102412" g_stop="102323" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="722" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E559691" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106210" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102831"/>
          <exon e_start="102412" e_stop="102323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAGGTTGTGCGTTTCTTTGAGTTCCAATTCATTCTGATCTCATTCTTTTGGATCACTAAACAAAATTGTTGAAGTGTAACATCTTCGAGCAGACTTATTCACTTCATGTTACCATTAACTATACCAAGTGTCTATAATATATAGTCCTTTTCATTTGAAATATATTTAGATAATACCTTCTTTCTAACTCTCAAATTACGTATTCAATTTTCTCTACTTTGAAAACAAATGGAAAGTTCTGAGCATGTTTACCTCTAATCTTTCACCTGTCAAGAATACTTGAGAAGTAGTATATACTATATACATCTTAAACTGTATGCGTACAGGTGAAGGGTGTAAATTATTTAATGTGAGGCACACACAAATCAGATATCTATTAGAACCAGCCACTGTAACTTCTTGACTTAAAATTTTCAGGTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAATGTTAATGACACAAGTTCTTCTGAAAAACATC</genome_strand>
        <mrna_strand>GTTTATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGCAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT.....................................................................ACAA-TTGACTGAAGCACTTATGTTCTTGTCTCATTTTATTGGTGATGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATCGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATACCATGATTATTGAATCTG-GTTAAAGACATACTATAAATCTGATATAATGTTAATGACACAAGCTCTTCTGAAAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487341" ref_strand="+" ref_description="SGN-E487341 [cSTE-25-A10]">
      <seq>gtttattccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaagtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttactggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaagaatacgacttgactgaagcacttatgttcttgtctcattttattggtgatgtacatcagcctcttcatgttggtttcactggagatcttggcggaaacagtataatcgatcgttggtacaggacggatactaatttgcaccatgtatgggataccatgattattgaatctgcgttaaagacatactatacatctgatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106510" stop="102054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106210" g_stop="106143" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="205" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="386" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="494" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="0.98"/>
            <acceptor a_prob="0.424" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="550" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="634" r_length="84" r_score="0.917"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102830" i_stop="102413" i_length="418">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="102412" g_stop="102354" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="693" r_length="59" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E487341" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106210" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102831"/>
          <exon e_start="102412" e_stop="102354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAGGTTGTGCGTTTCTTTGAGTTCCAATTCATTCTGATCTCATTCTTTTGGATCACTAAACAAAATTGTTGAAGTGTAACATCTTCGAGCAGACTTATTCACTTCATGTTACCATTAACTATACCAAGTGTCTATAATATATAGTCCTTTTCATTTGAAATATATTTAGATAATACCTTCTTTCTAACTCTCAAATTACGTATTCAATTTTCTCTACTTTGAAAACAAATGGAAAGTTCTGAGCATGTTTACCTCTAATCTTTCACCTGTCAAGAATACTTGAGAAGTAGTATATACTATATACATCTTAAACTGTATGCGTACAGGTGAAGGGTGTAAATTATTTAATGTGAGGCACACACAAATCAGATATCTATTAGAACCAGCCACTGTAACTTCTTGACTTAAAATTTTCAGGTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAAT</genome_strand>
        <mrna_strand>GTTTATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAAGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACTGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAGAAT.....................................................................ACGACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTATTGGTGATGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCATGTTGGTTTCACTGGAGATCTTGGCGGAAACAGTATAATCGATCGTTGGTACAGGACGGATACTAATTTGCACCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGATACCATGATTATTGAATCTGCGTTAAAGACATACTATACATCTGATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575973" ref_strand="+" ref_description="SGN-E575973 [35680]">
      <seq>gtttattccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaaaaatacaacttgactgaagcacttatgttcttgtctcattttattggtgatgtacatcagcctcttcatgtaggtttcactggagatcttggtggaaacagtataatcgttcgttggtacaggaggaagactaatttgcaccatgtatgggataccatgattatcgaatctgcgttaaagacatactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106510" stop="102526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106210" g_stop="106143" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="206" r_length="138" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="387" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="495" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="551" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102827" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="639" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E575973" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106210" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTC-AAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAG</genome_strand>
        <mrna_strand>GTTTATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT.....................................................................ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTATTGGTGATGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCATGTAGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATCGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417371" ref_strand="+" ref_description="SGN-E417371 [STM-25-G10]">
      <seq>ttctagggtttattccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattcagaaaaatacaacttgactgaagcacttatgttcttgtctcattttattggtgatgtacatcagcctcttcatgttggtttcactggagatcttggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106517" stop="102576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106217" g_stop="106143" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="212" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="393" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104173" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="501" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.424" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104103" g_stop="104048" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="557" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102914" g_stop="102876" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="596" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E417371" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106217" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104173"/>
          <exon e_start="104103" e_stop="104048"/>
          <exon e_start="102914" e_stop="102876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGGGTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAATGTGAGGAAGACTGCCCCTCTGTGTTATTGATGCATTTATTGGACTGGAGCTAATTGTTTCTAGTGACAGACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAGGTCAGCTCACCTTTCTGGAACCTTGGTGTATGTAACTGTAAATAAACACAAATGTATGTGTCTGCATATAAATGTTTGGAACTATTTCGATAAGTTTCTTTCAGTCTTAAATACTTGATTAAAGAATAAGTTTCTTTAAGTCTTTAATAATGACGTCCATACTGCTATGCCTCTGGCATAGAAGTAAAAAGAAGGGCAGCATGCACAAAGCATCCTGCATCTGGGGAAGGGTCGCACTCTAAGGGGGTCTAATGTAGTAAGCCTACCTTGACGTATAAATGATGTGGGAGTTATCCACGGGAAATGGAATTGGACCGTTAGAAATGCCATCATTTCTGAGTAATATGCTTCCTTTTCCTGATATAATCTCCTTAAGTGGGTGATTGTACCATGCTCCAAATATATGCCCTCTCCTTTTCTGGAGGCCCACTCAGTTCAAACTTATTTTGGTTATGGAAATCCAGAATTAAATATTGTGGTATTTCCTCATGCGAGGACTATGTTATTATATGCTGACATTCTATTCAGGGGAACTCTTCTTCCTCTGTAGTTTTGTGCTTCTCTTATGAAAGGAGACTCTTTTATTACCTGCATTGTGCTTGGCTGGACATGAACTAGGAAGGTCCAGTCTAGTTTAATAGATTAAGTTCTTCCATCATTCAATGACACCTGAACCTTGTACTCAAGTGGGAAGCTACTTTTATTAGAACCCCCACAAACAGTTGTTTTTGACCTTGTTTCAATCATCTACTGGTCTTGTAAAAAAGTTGCTCGTCTGGGGAAGCATGTGACTGATAAGCCTGATTTTTGAGAAAAAAAATTCCAATCCCTGTAGGTCACACAACATGTTTACCTTTGTGTGTGTGTGTGTTTGTGTGTCTCCCTCCAACTATCTTTTATTGAACCAGTTGTATTTTTGCATTCTGTCGTGTGATCGTCTGAAATATGATCACAAGGCAGGATAACTGATAAAAAAAAAATATGATCATGAAACCGACTTCATCAAATTTAAAGCTTGTACAGCATATTTTTGATGTTTCTTAACTATCTAAAGTTGAGTGGTGATCAGGAAAAGAAAATGGAAGTCCTGGAAGGTAAATTCAGTTTTATCTTATTTTGTTTACTGTGTGCAGCCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAAC</genome_strand>
        <mrna_strand>TTCTAGGGTTTATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT.....................................................................ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTATTGGTGATGTACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCATGTTGGTTTCACTGGAGATCTTGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446041" ref_strand="+" ref_description="SGN-E446041 [cSTA-19-D4]">
      <seq>ttctagggtttattccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactcaatgcaactttcgcagggatattatgatttgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106517" stop="103881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106217" g_stop="106143" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="212" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="393" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104181" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="493" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E446041" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106217" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGGGTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTC</genome_strand>
        <mrna_strand>TTCTAGGGTTTATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367524" ref_strand="+" ref_description="SGN-E367524 [cLPT-7-M12]">
      <seq>aactaacacctcaaaaattattataattctgggatcttgaaccaccaaaacaacccctagctactggttgagtaatttgattagaaaagatgggtgggtttgagctcaaatggtttgtaggagtagctgttgttctgatgatggttcaaaatattcttggttgggggaaagagggacactatattatctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccggaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccactaccactaccgctggagttctccgttacattatgtagatacacctgattttttgtgtaattacaaatattgccgagactgccatgacgggcatgggctcaaggacaggtgtgttacgggagcaatatacaactactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106502" stop="103916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106208" g_stop="106143" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="203" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="384" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104216" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="449" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E367524" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106208" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCA</genome_strand>
        <mrna_strand>AACTAACACCTCAAAAATTATTATAATTCTGGGATCTTGAACCACCAAAACAACCCCTAGCTACTG........................................................................................GTTGAGTAATTTGATTAGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGGAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGTTCTCCGTTACATTATGTAGATACACCTGATTTTTTGTGTAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446045" ref_strand="+" ref_description="SGN-E446045 [cSTA-19-D14]">
      <seq>ttctagggtttattccattttaaaagatcttgtcattcttgaatcgtgaaccaccaaaagaacccctaccaactgcttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgctgttctgatgatggttcaaaaaattcttggttgcgggaaagaaggacactatgttgtctgcaaaattgctcaagaatatctaacataagatgcttttgctgcattcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttccgcgccacatccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgttactgccatgactggcatggactcaaggacaggtgtgttactggagcaatatacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106517" stop="103920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106217" g_stop="106143" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.84"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="212" r_length="137" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="393" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104220" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="454" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E446045" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106217" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAGGGTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTA</genome_strand>
        <mrna_strand>TTCTAGGGTTTATTCCATTTTAAAAGATCTTGTCATTCTTGAATCGTGAACCACCAAAAGAACCCCTACCAACTG........................................................................................CTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGCTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGCGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACATAAGATGCTTTTGCTGCATTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCCGCGCCACATCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTTACTGCCATGACTGGCATGGACTCAAGGACAGGTGTGTTACTGGAGCAATATACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559046" ref_strand="+" ref_description="SGN-E559046 [18482]">
      <seq>attccacctcaaaagatcttgtcattcttgaatcttgaaccaccaaaagaacccctagcaactggttgtgtaatttgattggaaaagatgggtggatttgagctcaaatggtttgtaagagtagctgttgttctgatgatggttcaaaaaattcttggttgggggaaagaaggacactatgttgtctgcaaaattgctgaggaatatctaacagaagatgctttggctgcagtcaaagcattactcccagatcaagccgaaggtgatcttgcagctgtctgctcctggcctgatgaggttcggcgccacgtccactaccgctggagttctccattacattatatagatacacctgatttcttgtgcaattacaaatattgccgtgactgccatgacgggcatgggctcaaggacaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="106506" stop="103944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106206" g_stop="106143" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106054" g_stop="105918" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="201" r_length="137" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104757" g_stop="104577" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="382" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296">
            <donor d_prob="0.311" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104280" g_stop="104244" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="419" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E559046" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106206" e_stop="106143"/>
          <exon e_start="106054" e_stop="105918"/>
          <exon e_start="104757" e_stop="104577"/>
          <exon e_start="104280" e_stop="104244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTGGTACAATTTATTTTTCCTTAGAATATGTTGTTTCTTTTTGTACTGTATGTGTACCTTTAAACTACAGAGTTATTTTCTTTTCTTGCAGGTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAGGTAAATTGAGTTTGTTTTTTTTTTGAAATGTTTGCTAAGCTATGTACTTTCTGAGTAAATTCTTGTGGAGATTGAGTGTTTAGAGTAATGGGGTGTTTAATGTTAATCTTTTTTGGTGGGTTTATTCATAAAGGTTGAATCTTTATGTATTCGCTTGCAAGAATTTGCGTTGACTAGTTATCTGATTTCCTATTTGGCATTGGCTGAAGTTTTTTTAGGGGTTTTATGGGTGTGCATCCATTGTTGCAGAATTGTAGGGTATAGTTGTTTGATAACCAACCCGAAATAGAACGAGCAAGTGCTCAGTAACCAAACCAAAGATTTAAGGAAATAAATAAAAGAAAAAAGCAAAATGGAGAAAGAAAAAGATAAAGACTTTCCTTCATTCATTAATGCTTTAATTTGTGGCTACAACTGGATATATCAGGAACAGCTGGACATTGTAGAAAACACCATCTTAACAAACTAGGGTACTAAAGAAATAAGAGAAAATTGGGACTACACTGTTGTTGATGGAAACTCAGAGATACTACTTGGAAGCTCATGATACTATCCGTTACATAGTAGGTAACTTGATCTGGCAATTATATAGTTACATCGAATCATAATGTTTATAAAAATAGATAGTCTTCGTGTGCTTCAAATGATGAAGGCATAATACATAGATAGATAGGCACTCAAATATGGCGTCAAATGGCAAGTTAACACTTCAACTTTAGTAGCGTACATCCAGACACCTCAACAACTCATCCCTACCGAGTCTCGTGGACACCCAATTCTAACGTGACACATAAATTTTGAAGATATGTGAATGATCATTTTGTAAGGTGGAGTGTTCAACTAACACACTAGAACGAGCTGAGGTGTCTAGATGTGCATTCTCAAAGTTGGAGTGTTTAGTTGTTAGTTGAAGACAAGTTAAGGTGTCATCTATGTATTATTATTGGAGGAAGATTCTTGAAATCCTTTTGAGATATTCCCAGAAACTTCTTATGGTGGACATATTTATGATTCTGACAGATTTTTATCAAATTAGGTGAAGTCTTTAATATTTTTCTTTGAGTGGAAGCAAGCATATGGAGAAGTACTGACAAAATAAAAATAAAAAATTGGTCGAGCTCTTCTTTTGGAAGCTTATGTGAATCTCTTGGGTTTTTCAGGAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCCGTAAGTGACACTACATATAATTGCTTCTGTAGAAAAATTTCTTTTGGTATCAAGTTCACTCCCTGGATATCGAATGAAAAGAGAAATATGGAAAAATATTTCTAGCTCGTGTCTGCATTTCCTATTGTTACTTGGTTCACTGAAGTCAAAGTAGCTGTACTTGATCCAACGTTTCATAGTTGGCATTTTTTCTTTAATAACAATAAACCCTGATATGGCATCTTCAGATGAACCTTTTAATGCACTTTTGTATCTTAGCTTTGAGCCACTAATGACCTTGGTCTACTTTCTGATAGGAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTG</genome_strand>
        <mrna_strand>ATTCCACCTCAAAAGATCTTGTCATTCTTGAATCTTGAACCACCAAAAGAACCCCTAGCAACTG........................................................................................GTTGTGTAATTTGATTGGAAAAGATGGGTGGATTTGAGCTCAAATGGTTTGTAAGAGTAGCTGTTGTTCTGATGATGGTTCAAAAAATTCTTGGTTGGGGGAAAGAAGGACACTATGTTGTCTGCAAAATTGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTAACAGAAGATGCTTTGGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACGTCCACTACCGCTGGAGTTCTCCATTACATTATATAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC........................................................................................................................................................................................................................................................................................................GTGACTGCCATGACGGGCATGGGCTCAAGGACAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745262" ref_strand="+" ref_description="SGN-E745262 [GI|47105816]">
      <seq>gagagcgttcaagaacaagaatggaaacaaaatacaagaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattttcttgttcttagtgttaaaatagcctgtacttacagccagtccctccccccccccccccctccaaacatctgctgcatgtacactttgcaatgtttccaataaagcaaaaccttttttatgatttctcataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="108968" stop="113890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109267" g_stop="109631" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="545" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="627" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="735" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="894" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113590" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="895" r_stop="1240" r_length="346" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1242" polyA_stop="1263"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E745262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1239</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109267" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCGTTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCT-CCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA</genome_strand>
        <mrna_strand>GAGAGCGTTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720088" ref_strand="+" ref_description="SGN-E720088 [FC09DB07]">
      <seq>gagcgttcaagaacaagaatggaaacaaaatacaagaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggtttatgggaggaacagtgacacaagtaaatcttggctgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="108969" stop="112106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109269" g_stop="109631" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="543" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="625" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="733" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="866" r_length="133" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E720088" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109269" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTG</genome_strand>
        <mrna_strand>GAGCGTTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGG-TTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304080" ref_strand="+" ref_description="SGN-E304080 [cLEX-6-F21]">
      <seq>ttcaagaactagaatggaaacaaaatacaagaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="108974" stop="111490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109274" g_stop="109631" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="538" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111190" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="566" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E304080" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109274" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTA</genome_strand>
        <mrna_strand>TTCAAGAACTAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705204" ref_strand="+" ref_description="SGN-E705204 [FA26BH03]">
      <seq>tggaaacaaaatacaagaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="108988" stop="112100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109288" g_stop="109631" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="524" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="606" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="714" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111800" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="842" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E705204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109288" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGC</genome_strand>
        <mrna_strand>TGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700150" ref_strand="+" ref_description="SGN-E700150 [FA12BB07]">
      <seq>caagaaagtcgtgtaaacctctccaactctctttccaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtangctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaagctgctggcttgcgtantaaagcccaaaaaacaaagctcaaattgtgagaaaagtggaaaaaatgtttggcctgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109001" stop="113626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109301" g_stop="109631" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="510" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="592" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="700" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="859" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113326" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="938" r_length="79" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E700150" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109301" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTG</genome_strand>
        <mrna_strand>CAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCC-AAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTANGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTANTA-AAGCCCAAAAAACAAAGCTCAAATTGTGAGAAAAGTGG-AAAAAATGTTTGGCCTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335023" ref_strand="+" ref_description="SGN-E335023 [cTOE-9-M3]">
      <seq>gaaagtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttctttctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttccttctgtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgctttgnagtcaaaagtttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcgggggctgatgtttgcatcaattacaagactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109004" stop="111683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109304" g_stop="109631" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="508" r_length="180" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="0.94"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="590" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.911" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111383" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="658" r_length="68" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E335023" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109304" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTC-GGGGCTGATGTTTGCATCAATTACAAGACTGA</genome_strand>
        <mrna_strand>GAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTTCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTTCTGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCTTTGNAGTCAAAAGTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGGCTGATGTTTGCATCAATTACAAGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703147" ref_strand="+" ref_description="SGN-E703147 [FA20CG07]">
      <seq>gtcgtgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagagccccaaaaacaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109008" stop="113583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109308" g_stop="109631" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="504" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="694" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="853" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113283" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="854" r_stop="890" r_length="37" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E703147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109308" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCT</genome_strand>
        <mrna_strand>GTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAG-AGCCCCAAAAACAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697209" ref_strand="+" ref_description="SGN-E697209 [FA01AE11]">
      <seq>tgtaaacctctccaactctctttccaaaaccttgttaactcagtgagtaaaattgattgtgattaaggatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtnttggtcgaccattttcatgacgagcaagctttcctctggtgnaacgtttctgatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109012" stop="111257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109312" g_stop="109631" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="501" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111169" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="508" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E697209" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109312" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGT-TTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATG</genome_strand>
        <mrna_strand>TGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTNTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGNAACGTTTCTG...............................................................................................................................................................................................................ATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702526" ref_strand="+" ref_description="SGN-E702526 [FA18DH04]">
      <seq>gatgaaggctgttgtaatcacaagccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaatgtttgggcctgcattgcagcagggaaagtgaaaccggtggtgtacaagtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109079" stop="113664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109379" g_stop="109631" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="433" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="515" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="623" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="782" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113364" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="900" r_length="118" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E702526" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109379" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTC</genome_strand>
        <mrna_strand>GATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAATGTTTGGGCCTGC-ATTGCAGCAGGGAAAGTGAAACCGGTGGTGTACAAGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268876" ref_strand="+" ref_description="SGN-E268876 [cLEM-4-D9]">
      <seq>ttgtaatcacaagccctggtggtccagaagtgttgaagctgcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctactggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109090" stop="111698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109390" g_stop="109631" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="422" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="504" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111398" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E268876" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109390" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACG</genome_strand>
        <mrna_strand>TTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTGCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTACTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700844" ref_strand="+" ref_description="SGN-E700844 [FA14BC11]">
      <seq>caccgtccctggtggtccagaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtanaagcccaaaaaacaaagcttcaattgtgagaaaagtggaaaaaaatgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109103" stop="113616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109397" g_stop="109631" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="415" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="497" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="605" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="764" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113246" g_stop="113316" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="835" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E700844" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109397" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGG</genome_strand>
        <mrna_strand>CACCGTCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTANAAGCCCAAAAAACAAAGCTTCAATTGTGAGAAAAGTGGAAAAAAATGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729407" ref_strand="+" ref_description="SGN-E729407 [LA20DH05]">
      <seq>gaagtgttgaagcttcaagaagtggaagacccacaaattaaagatgatgaaatcttgattaagatagcagctactgcccttaatagagctgatacccttcaacgccaaggtaaatacccaccccctaaaggcgacagtgaatacccaggtcttgaatgttctggaactgttgaagcagtcggcaaggaagttactcgctggaaaattggtgatcaggtatgtgctctcattggtggaggtggttatgcggagaaagtagctgtacctactggacaagttcttcctattccatcaggtgtgtctttacaagatgcggctagctttcctgaagtggtgtgcactgtttggtcgaccattttcatgacgagcaagctttcctctggtgaaacgtttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattaggttttatgggaggaacagtgacacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="109116" stop="112090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109416" g_stop="109631" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110776" g_stop="110955" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="396" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111163" g_stop="111244" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="478" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="586" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111673" g_stop="111790" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="705" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E729407" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109416" e_stop="109631"/>
          <exon e_start="110776" e_stop="110955"/>
          <exon e_start="111163" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAGGTTTGTCTGATTACAGTTTCCATTTTTTTAAAAAAAGATGTCAACTTTATAATTGAAATTGAGGCTTAATTGTTGATTGTTGTTTATTCTCTTCATGTTGGGTAATATGACAGTGAGGAAGTTATCTGAAAATGCACAAATCGTTGAATTTATGGGACTAGGCTAAGAACAGACAGGGAACAAAGGAATAAGATATCTGAAAATGTCTAATCTTTGGAATCTTACTAGCTCCATTTCAATTTATTTTGTGTGTGTGTTTTTTCACTTGGCATCAAGTTTAAGAAAGTAAAGAGATACTTTTAATTTTAATTTTGAGGTTTTAAACTAAAATAGGTAGAGTGAACTAAAGTGTCTTTGGAAAAAAAAAAACCAAAGTGTCGTTTAATCTTGTTGTCTTAAACAAGCCTTCTAAAAAGTTAGAACTAAGAGTTGCCAAAAGGGAAAAAAGACATTCTTTTTGAAACGGACTAAAAATGTAATTAAGATAAACAAATTGAAACAGATGGAGTGTTTTTGTTGGAGTTTTCTATGTCAGGCCTAGGAATAGGTAGGAATCAGAGAACCATTAACGAGTAATGGAATAAAATGAGCCCCAATAGAGAAGAACGGATAAAGGATTCATATGGCTTGACTCCACCTGGTTTGAGTTTTTGGGGTAGTTAACTCGTTATGTTGTTGTGTATGGAGTAAGATATTTCCATTTCATTTTGTGGTGCTTCGTTTGACATAAATTTGGTAGAATTTAATAGTGGTGGAAGTGGTGATAATTAAGTACAAGGAGGGGAACAATGTCTATATCTTGATAAGTAAAGATTAAGGGCTTTGGAGTCGGAGTAGAGTGCAAGATGACCTCTGCACATCAGGGACAAAAGGCTTCTTGTTTCAAGATGAAAGAATTTCCTTGAGTAGTAACCTGAATGATTCTGGATAGCCCTTGTTAGTTAGGGTAGCAGTTATCCATTAACTTCCTGAAGTGAAACTAGTACTGTTTTAAGTTCCTGTAAAGCCTTAGCAGGAGACAACAGTGATGTTTTTCTGATCTTTATGTTCTTTTTCTTTGTTGGTTGGGAGTTCACATTTCTATGTATTGTTTGAAAGGGAGTTTTGTTTAGTGCATTGATGATGTAAAAGCTTCACATAATAGGTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTGGTGATTAGACAGACCATAGCTATTCTTTAAAACAATTTGTTGTTTAGCAGTAGTTCCTTTTCTTTTATCTGTGCAGATTATCAGCCATTTAGTCAATTGGCAGAATCTTTTGGGTAGTATGTTCACAATTGAATCTTTATATCCCTGATTCCGGTCGACTAAGATCAAGTACGTGAAATAACTAATAGCTACATGTGTTACTTTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATT-GGTTTTATGGGAGGAACAGTGACACAAGT</genome_strand>
        <mrna_strand>GAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG...............................................................................................................................................................................................................ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTAGGTTTTATGGGAGGAACAGTGACACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369356" ref_strand="+" ref_description="SGN-E369356 [TUS-25-M2]">
      <seq>ttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattttcttgttcttagtgttaaaatagcctgtacttacagccagtccctcccccccccccccctccaaacatctgctgcatgtacactttgcaatgttttcaataaaagcaaacctttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="110858" stop="113883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111158" g_stop="111244" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="354" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113246" g_stop="113579" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="688" r_length="334" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="700"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E369356" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111158" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTT</genome_strand>
        <mrna_strand>TTCTGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTTCAATAAAAGCAAACCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369751" ref_strand="+" ref_description="SGN-E369751 [TUS-25-M1]">
      <seq>ttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaatggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattttcttgtttcttagtgttaaaatagcctgtacttacagccagtcccttccccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="110858" stop="113817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111158" g_stop="111244" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="354" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113246" g_stop="113517" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="627" r_length="273" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E369751" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111158" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTG-TTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCC</genome_strand>
        <mrna_strand>TTCTGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAATGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTTCCCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255274" ref_strand="+" ref_description="SGN-E255274 [cLEG-30-A1]">
      <seq>ttctgatacatggaggctctagtggaattggtacgtttgccattcaaatggctaagtgccttggagtcaaagttttcatcacagcaggaagtgaggaaaaactttccgcatgcaaagaactcggggctgatgtttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="110858" stop="113750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111158" g_stop="111244" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111317" g_stop="111424" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="354" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113246" g_stop="113450" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="559" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E255274" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111158" e_stop="111244"/>
          <exon e_start="111317" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAGGTTCATGATGATTTCTTATCTTATTATGGAACTGAAATCATTCAGCTAACCATGTCAAATCTTGTTAACCAGGAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTA</genome_strand>
        <mrna_strand>TTCTGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG........................................................................GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232263" ref_strand="+" ref_description="SGN-E232263 [cLEL-5-N18](-)">
      <seq>gggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtcaaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="114516" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113945" i_stop="111276" i_length="2670">
            <donor d_prob="0.442" d_score="1.00"/>
            <acceptor a_prob="0.468" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111275" g_stop="111253" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="294" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E232263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114216" e_stop="113946"/>
          <exon e_start="111275" e_stop="111253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAAGTCAACCTTTGCTCTTTTTTCAGCTCTGTTGTGTTCATGGCTTTTGTTCTATTACTGGAATGACATGCAAATTCATTCTCCAGTCTAGTTGCAATATCACGTCGATCTATAGTTTCTTTTAATAAATAATAACAACAAAAAATAAAGTTAAAGATTAGAGTATTGATTTACATTATCAAATGTTAATGCACAATTAAAGTTATGTCAAGTGGATATTATTTGAAGAAAAAAAAAACATGAAAATATTGTAGGGATAAAGATTCGTAGTTCAAATTTGTTTCTAAAAAATACTTTCAATTTCAAACATATACATCGAAAAATCGTCGAAAACTTAAAGCACTCAGAAGATGGAAAGTGAGAAATCATAAAAAAGGTTTTGCTTTATTGGAAACATTGCAAAGTGTACATGCAGCAGATGTTTGGAGGGGGGGGGGGGGGAGGGACTGGCTGTAAGTACAGGCTATTTTAACACTAAGAACAAGAAAATCTCTCTTTTACAACATTCAAACAGTGAGCAGAATCTTTCCAATGTGGTTGCTGCTTTCCATTAACTGGTGAGCCTCAGCAGCTTCTGCTAAGGGGAAGTACTTGTACACCACCGGTTTCACCTTCCCTGCTGCAATTGCAGGCCAAACATTTTTTTCCACTTCTCTCACAATTTGAGCTTTGTTTTTTGGGCTTCTACTACGCAAGCCAGCAGCTGTAGAAAAGTCACAAATCGACATAAAAACTACTGAAACACAATAAAAAATGAGGACCATGGCATTCATTCAGAGAAAAAAATCCATGAGACTAGATTTCAACATTCCAAAAGATTTTTCTCTCTCCAATTGTCTGTGCACTTCATTATAAAAAAAGAACTCCCTCAAAGTTCTTCAACTAAGAGAAGGATCAGCTAGAACATGGGAGGAAAAAGATACGTTGTATAGGATTATGCGAGAATGGGAGAGCTGGACTAATAATTTCCAAATTTCAATACTCAAACTAACCATAACAAGTACACCGGAGGAAGAGGCCGAGATTTGACCAAGTTGACGAAGAATTACTAAATGAGGATTGCAAAGACGATATATAGCTCAACTTCACATGAAAGCTGAATCACCTTCTCTTTTTTTTTCTTTTTTCTTTGAGAAGGTAAATATATGTGAAATGAATCGTAATATTTCAGTTCTCCTGATATTAAATTGAGACCTATACCATCTAATAAAAAAAGCCAGCAATATCAGTGGAAGCCTGTGTTGCCTTTGCTTCTGTTACACTATCTTATCTTTCCCTTCCTGAAATAAATTTAAGTATGTCAGTGCACTTAGAAGTCACCAGTTTATTATAAACCATGGTTGGTGGTTGGAAGCCAGGACTGTTATGAGATATTGGGGCTGATTACTGCAAGGAAATAAAGCTACGGAGGAACAGCAGTAGAAGTGAAGTGAGGAAAAGTAAAGAGGACAAAAATAAAGGAGCATGATTAGGATATGTTATAGAGCCTTATAAAAATGGAAGAAAGATACAAAAACATGGTTTCAACGTGTCACAAAAGTAAGCTTCTCACTCTGTCAAAATAAGGGATATCAACGAGGCAAATGAACACCGAGACTCAAGACAGTTCATTTGCGAAGTGGAGAACACTAGGACCTGGATACACACACACACATGAGAGAGAGAGAGAGAGAGAAACTTCTTTTATTTAAGCTCCGTTGAAGTAGAAGCAATTGCATGTACAAATAAGGTGCAGCATAAAGAGAAGTCAGAGAATATTAAGGCCAGGGTAAATTAAGATTGCTTTGCAGCTGCAATTGATAACCGTTGCTTCCCCATGGAATGAACCAACTGAATCTACACACTAAGCCCAACTGAACACTAGACCTTAGAAGTCATCTATTGGCATGTGCAACTATATGAATACATTCTCTGCCCCACTCATTGAGCTAGTCAGAGTGGGGTGGGAATAGAAAGAAAACTGGAATTACAGTAGCGTGTCTTAAGATATCTCTCTTCCAGTTGACTAACAGCATTCTTGTTCGAGTATTTGGTCAGACAAGTTCACCATATCAAGTTTAAGAATACATTTCACAGAAAAGTTCACTCAAAATATATCAGAGCACATCTGCACTTACCCTGCACTGTAAGGCGTCTTGCTAACAAACAGCCAAGATTTACTTGTGTCACTGTTCCTCCCATAAAACCAATAATGAAGAGCCTACCATCAACATTGAGGCTGTCAAGGTTCCGTTGGAAGTATGAACCTCCTATATTATCTAGTATGACATCAACACCTGTTTTGAACATTGAAGTTAGAATATCATCAATGTAAGACATGAAAAGAAATTGACTGCTTGCCCCTGTAGCCCCCAGAGATATATGATAACCATCATAATTTCTCCAGAAACATGCATATTCGAATTTTAATTGATATCACAAAGACCAAGTTTCCAACTTATTTGGAACTGAGGCGTAGTTGTAGTTTGTTTATCAAGAAGACCTAGTTTCTAATATAATAAATGATGCCTATGAGAATGATTACCTTTCCCTCCTGTTTCTTCCTTGATGCGTGTAACAAAGTCTTCAGTCTTGTAATTGATGCAAACATCAGCCCCGAGTTCTTTGCATGCGGAAAGTTTTTCCTCACTTCCTGGTTAACAAGATTTGACATGGTTAGCTGAATGATTTCAGTTCCATAATAAGATAAGAAATCA</genome_strand>
        <mrna_strand>GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300622" ref_strand="+" ref_description="SGN-E300622 [cLET-45-F23]">
      <seq>tttgcatcaattacaagactgaagactttgttacacgcatcaaggaagaaacaggagggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagcgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaagaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattatcttgttcttagtgttaaaatagcctgtacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="111062" stop="113796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111362" g_stop="111424" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="222" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113246" g_stop="113496" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="473" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E300622" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111362" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTAC</genome_strand>
        <mrna_strand>TTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGCGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAGAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTATCTTGTTCTTAGTGTTAAAATAGCCTGTACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339356" ref_strand="+" ref_description="SGN-E339356 [cTOF-4-C1]">
      <seq>ggaaaggtgttgatgtcatactagataatataggaggttcatacttccaacggaaccttgacagcctcaatgttgatggtaggctcttcattattggttttatgggaggaacagtgacacaagtaaatcttggctgtttgttagcaagacgccttacagtgcaggctgctggcttgcgtagtagaagcccaaaaaacaaagctcaaattgtgagagaagtggaaaaaaatgtttggcctgcaattgcagcagggaaggtgaaaccggtggtgtacaagtacttccccttagcagaagctgctgaggctcaccagttaatggaaagcagcaaccacattggaaagattctgctcactgtttgaatgttgtaaaagagagattttcttgttcttagtgttaaaatagcctgtacttacagccagtccctccccccccccccccctccaaacatctgctgcatgtacactttgcaatgtttccaataaagcaaaaccttttttatgatttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="111368" stop="113890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111419" g_stop="111424" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111673" g_stop="111831" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="165" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113246" g_stop="113590" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="511" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113591" i_stop="113830" i_length="240">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113831" g_stop="113840" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="521" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E339356" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111419" e_stop="111424"/>
          <exon e_start="111673" e_stop="111831"/>
          <exon e_start="113246" e_stop="113590"/>
          <exon e_start="113831" e_stop="113840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGTAATCATTCTCATAGGCATCATTTATTATATTAGAAACTAGGTCTTCTTGATAAACAAACTACAACTACGCCTCAGTTCCAAATAAGTTGGAAACTTGGTCTTTGTGATATCAATTAAAATTCGAATATGCATGTTTCTGGAGAAATTATGATGGTTATCATATATCTCTGGGGGCTACAGGGGCAAGCAGTCAATTTCTTTTCATGTCTTACATTGATGATATTCTAACTTCAATGTTCAAAACAGGTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGGGTAAGTGCAGATGTGCTCTGATATATTTTGAGTGAACTTTTCTGTGAAATGTATTCTTAAACTTGATATGGTGAACTTGTCTGACCAAATACTCGAACAAGAATGCTGTTAGTCAACTGGAAGAGAGATATCTTAAGACACGCTACTGTAATTCCAGTTTTCTTTCTATTCCCACCCCACTCTGACTAGCTCAATGAGTGGGGCAGAGAATGTATTCATATAGTTGCACATGCCAATAGATGACTTCTAAGGTCTAGTGTTCAGTTGGGCTTAGTGTGTAGATTCAGTTGGTTCATTCCATGGGGAAGCAACGGTTATCAATTGCAGCTGCAAAGCAATCTTAATTTACCCTGGCCTTAATATTCTCTGACTTCTCTTTATGCTGCACCTTATTTGTACATGCAATTGCTTCTACTTCAACGGAGCTTAAATAAAAGAAGTTTCTCTCTCTCTCTCTCTCTCATGTGTGTGTGTGTATCCAGGTCCTAGTGTTCTCCACTTCGCAAATGAACTGTCTTGAGTCTCGGTGTTCATTTGCCTCGTTGATATCCCTTATTTTGACAGAGTGAGAAGCTTACTTTTGTGACACGTTGAAACCATGTTTTTGTATCTTTCTTCCATTTTTATAAGGCTCTATAACATATCCTAATCATGCTCCTTTATTTTTGTCCTCTTTACTTTTCCTCACTTCACTTCTACTGCTGTTCCTCCGTAGCTTTATTTCCTTGCAGTAATCAGCCCCAATATCTCATAACAGTCCTGGCTTCCAACCACCAACCATGGTTTATAATAAACTGGTGACTTCTAAGTGCACTGACATACTTAAATTTATTTCAGGAAGGGAAAGATAAGATAGTGTAACAGAAGCAAAGGCAACACAGGCTTCCACTGATATTGCTGGCTTTTTTTATTAGATGGTATAGGTCTCAATTTAATATCAGGAGAACTGAAATATTACGATTCATTTCACATATATTTACCTTCTCAAAGAAAAAAGAAAAAAAAAGAGAAGGTGATTCAGCTTTCATGTGAAGTTGAGCTATATATCGTCTTTGCAATCCTCATTTAGTAATTCTTCGTCAACTTGGTCAAATCTCGGCCTCTTCCTCCGGTGTACTTGTTATGGTTAGTTTGAGTATTGAAATTTGGAAATTATTAGTCCAGCTCTCCCATTCTCGCATAATCCTATACAACGTATCTTTTTCCTCCCATGTTCTAGCTGATCCTTCTCTTAGTTGAAGAACTTTGAGGGAGTTCTTTTTTTATAATGAAGTGCACAGACAATTGGAGAGAGAAAAATCTTTTGGAATGTTGAAATCTAGTCTCATGGATTTTTTTCTCTGAATGAATGCCATGGTCCTCATTTTTTATTGTGTTTCAGTAGTTTTTATGTCGATTTGTGACTTTTCTACAGCTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCC-TCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCACTTTCCATCTTCTGAGTGCTTTAAGTTTTCGACGATTTTTCGATGTATATGTTTGAAATTGAAAGTATTTTTTAGAAACAAATTTGAACTACGAATCTTTATCCCTACAATATTTTCATGTTTTTTTTTTCTTCAAATAATATCCACTTGACATAACTTTAATTGTGCATTAACATTTGATAATGTAAATCAATACTCTAATCTTTAACTTTATTTTTTGTTGTTATTATTTATTAAAAGAAACTATAGA</genome_strand>
        <mrna_strand>GGAAAG........................................................................................................................................................................................................................................................GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA................................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232163" ref_strand="+" ref_description="SGN-E232163 [cLEL-5-H6](-)">
      <seq>agttaactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattggcatgtgttatccatagttcatcaggggtgtgtgggcaagtcagaatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttcaagccttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtccaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="114963" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114663" g_stop="114570" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="365" r_length="271" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113945" i_stop="113725" i_length="221">
            <donor d_prob="0.442" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113724" g_stop="113703" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="387" r_length="22" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E232163" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114663" e_stop="114570"/>
          <exon e_start="114216" e_stop="113946"/>
          <exon e_start="113724" e_stop="113703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAAGTCAACCTTTGCTCTTTTTTCAGCTCTGTTGTGTTCATGGCTTTTGTTCTATTACTGGAATGACATGCAAATTCATTCTCCAGTCTAGTTGCAATATCACGTCGATCTATAGTTTCTTTTAATAAATAATAACAACAAAAAATAAAGTTAAAGATTAGAGTATTGATTTACATTATCAAATGTTAATGCACAATTAAAGTTATGTCAAGTGGATATTATTTGAAGAAAAAAAAAACATGAAAA</genome_strand>
        <mrna_strand>AGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGCATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGAATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTCAAGCCTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCCAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA.............................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232619" ref_strand="+" ref_description="SGN-E232619 [cLEL-5-N18](-)">
      <seq>agttaactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattgggatgtgttatccatagttcatcaggggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtcaaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="114963" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114663" g_stop="114570" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="365" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113945" i_stop="113727" i_length="219">
            <donor d_prob="0.442" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113704" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="388" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E232619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114663" e_stop="114570"/>
          <exon e_start="114216" e_stop="113946"/>
          <exon e_start="113726" e_stop="113704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAAGTCAACCTTTGCTCTTTTTTCAGCTCTGTTGTGTTCATGGCTTTTGTTCTATTACTGGAATGACATGCAAATTCATTCTCCAGTCTAGTTGCAATATCACGTCGATCTATAGTTTCTTTTAATAAATAATAACAACAAAAAATAAAGTTAAAGATTAGAGTATTGATTTACATTATCAAATGTTAATGCACAATTAAAGTTATGTCAAGTGGATATTATTTGAAGAAAAAAAAAACATGAAA</genome_strand>
        <mrna_strand>AGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA...........................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232663" ref_strand="+" ref_description="SGN-E232663 [cLEL-5-H6](-)">
      <seq>aactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattgggatgtgttatccatagttcatcaggggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtcaaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="114959" stop="70034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114659" g_stop="114570" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="361" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113945" i_stop="113727" i_length="219">
            <donor d_prob="0.442" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113704" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="384" r_length="23" r_score="0.739"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E232663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114659" e_stop="114570"/>
          <exon e_start="114216" e_stop="113946"/>
          <exon e_start="113726" e_stop="113704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAAGTCAACCTTTGCTCTTTTTTCAGCTCTGTTGTGTTCATGGCTTTTGTTCTATTACTGGAATGACATGCAAATTCATTCTCCAGTCTAGTTGCAATATCACGTCGATCTATAGTTTCTTTTAATAAATAATAACAACAAAAAATAAAGTTAAAGATTAGAGTATTGATTTACATTATCAAATGTTAATGCACAATTAAAGTTATGTCAAGTGGATATTATTTGAAGAAAAAAAAAACATGAAA</genome_strand>
        <mrna_strand>AACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA...........................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372147" ref_strand="+" ref_description="SGN-E372147 [TUS-30-H6](-)">
      <seq>cttatgattcatggaaatgtttgaagaaatgtggtcaacctgctcaagtgttgtaccatgtaccacgcagttggttaaagccagaaaagaacttgcttgtgctgcatgaagagcttggtggtgacccttcaaaaatatctttctcaacgcgatctgggcaaacaatttgtgctcatgtatctgagttagatcctccacctgttgatacttggaagacagacaaagatcaaacatctcaagaaccttcattgcaactgaattgtgagcaaggatggactatcaccgcagttaactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattgggatgtgttatccatagttcatcaggggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtcaaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="115357" stop="113641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115057" g_stop="115006" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114897" g_stop="114570" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="380" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="651" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="655" polyA_stop="664"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E372147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115057" e_stop="115006"/>
          <exon e_start="114897" e_stop="114570"/>
          <exon e_start="114216" e_stop="113946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTTGTGAGTATATAGCTTTGGCTAGTGTATTTTATTCTTGATGCTTTGCGTTTTCCTGATCCTCCTTGCAAATAGATTTCACCGAGTACTGACCATTAAACCTTCATATAGGTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA</genome_strand>
        <mrna_strand>CTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT............................................................................................................GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372148" ref_strand="+" ref_description="SGN-E372148 [TUS-30-H6]">
      <seq>ttatgattcatggaaatgtttgaagaaatgtggtcaacctgctcaagtgttgtaccatgtaccacgcagttggttaaagccagaaaagaacttgcttgtgctgcatgaagagcttggtggtgacccttcaaaaatatctttctcaacgcgatctgggcaaacaatttgtgctcatgtatctgagttagatcctccacctgttgatacttggaagacagacaaagatcaaacatctcaagaaccttcattgcaactgaattgtgagcaaggatggactatcaccgcagttaactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattgggatgtgttatccatagttcatcaggggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatggttggtgtagtcattagcttagcgtggtaaccttctttgtcaaattttctgcttctagcaatcaaatgtactggtctttgttttagccagagccagctttacttcggtacagccctaatcttgatgatacaaaagagtttataagtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="115356" stop="113641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115056" g_stop="115006" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114897" g_stop="114570" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="379" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114216" g_stop="113946" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="650" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="664"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E372148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115056" e_stop="115006"/>
          <exon e_start="114897" e_stop="114570"/>
          <exon e_start="114216" e_stop="113946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTTGTGAGTATATAGCTTTGGCTAGTGTATTTTATTCTTGATGCTTTGCGTTTTCCTGATCCTCCTTGCAAATAGATTTCACCGAGTACTGACCATTAAACCTTCATATAGGTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA</genome_strand>
        <mrna_strand>TTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT............................................................................................................GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285834" ref_strand="+" ref_description="SGN-E285834 [cLES-5-B6]">
      <seq>ttatgattcatggaaatgtttgaagaaatgtggtcaacctgctcaagtgttgtaccatgtaccacgcagttggttaaagccagaaaagaacttgcttgtgctgcatgaagagcttggtggtgacccttcaaaaatatctttctcaacgcgatctgggcaaacaatttgtgctcatgtatctgagttagatcctccacctgttgatacttggaagacagacaaagatcaaacatctcaagaaccttcattgcaactgaattgtgagcaaggatggactatcaccgcagttaactttgctagctttggaactcctacaggagattgtggagcattcattgaagggagttgccattgggatgtgttatccatagttcatcaggggtgtgtgggcaagtcaggatgttccattcctatcaccatggctaaacttggtgacccatgtcctggagtacaaaaaagtctggctgttgaagctttttgcagtgtttgaatcatcaaattctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="115356" stop="113790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115056" g_stop="115006" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114897" g_stop="114570" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="379" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114216" g_stop="114090" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="506" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E285834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115056" e_stop="115006"/>
          <exon e_start="114897" e_stop="114570"/>
          <exon e_start="114216" e_stop="114090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTTGTGAGTATATAGCTTTGGCTAGTGTATTTTATTCTTGATGCTTTGCGTTTTCCTGATCCTCCTTGCAAATAGATTTCACCGAGTACTGACCATTAAACCTTCATATAGGTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAGGTAATATTATTAGCATTTCTTCATTTGTTTCTACTTATATTGGTGATAACTTTGGAAAATCCCCATATACTACTCAAAGTGTTGTTCATCAAGGCTTGAACTATCAAAGAATTATCAGATCCCACATTGGTTGAGGGAATGAAATTTGATCTCCTTGTTTTGACCCAGACAATCCTCATCCCATGAGCTAGATTTTGGGATTGAGTTAAACTTAATGTTCAATTTACTTCGCATGGTATCTCAGCCAGACCTATCGATTCTTGTTTCCTTCACAAGCTAGCTTTTGGATTTGAGTTAAGCCAAAGTCCATTTTATCGTATGTTTGGAACTGAAAATCTTGAACGACTACGCAGGGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATG</genome_strand>
        <mrna_strand>TTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT............................................................................................................GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG.................................................................................................................................................................................................................................................................................................................................................................GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273070" ref_strand="+" ref_description="SGN-E273070 [cLEM-25-P20]">
      <seq>ttctctgtggattcaggggagttctgtcccagtacatcagagtttgatatggtacaagacaagtttttctcctccagaaggaagaggccctatatcgctaaatctgtcaagtatgggtaaaggtcaggcatgggtaaatgggcagcatatagggagatactggtcttcttatcgttcaccctcaacaggctgttctgataattgtgactacagaggagcttatgattcatggaaatgtttgaagaaatgtggtcaacctgctcaagtgttgtaccatgtaccacgcagttggttaaagccagaaaagaacttgcttgtgctgcatgaagagcttggtggtgacccttcaaaaatatctttctcaacgcgatctgggcaaacaatttgtgctcatgtatctgagttagatcctccacctgttgatacttggaagacagacaaagatcaaacatctcaagaaccttcattgcaactgaattgtgagcaaggatggactatcaccgcagttaactttgctagctttggaactcctacaggagattgtggagcattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="115761" stop="114312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115461" g_stop="115404" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115217" g_stop="115006" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="270" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114897" g_stop="114612" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="556" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E273070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115461" e_stop="115404"/>
          <exon e_start="115217" e_stop="115006"/>
          <exon e_start="114897" e_stop="114612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAGGTGTGTAGAATTGCTTGGTTCACTTGTTTTATGTCAACTGCTTATCATTTAGGTACCTTTCTTCCGACAACAAAAGAAAAAAATACCTTTCTAGGAATAGAGTGGCAGTTAATGTCAATGCTGGTGCTAAGATAATTTGTTGCATCTGTTGTATTCTTCTCTTGATTCTGGATATCTTATTTCCAGACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTTGTGAGTATATAGCTTTGGCTAGTGTATTTTATTCTTGATGCTTTGCGTTTTCCTGATCCTCCTTGCAAATAGATTTCACCGAGTACTGACCATTAAACCTTCATATAGGTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATT</genome_strand>
        <mrna_strand>TTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG..........................................................................................................................................................................................ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT............................................................................................................GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698137" ref_strand="+" ref_description="SGN-E698137 [FA05BE06]">
      <seq>cggaactatggaccatggtttgacatctctggagcaggtgtattttctgttatcttcagtgatttgaagaattccaagaatttttcttctacagaatggatctaccaggtaggtcttgaaggtgagtatcttggacttgataaagttagtcttgcaaatagttctctgtggattcaggggagttctgtcccagtacatcagagtttgatatggtacaagacaagtttttctcctccagaaggaagaggccctatatcgctaaatctgtcaagtatgggtaaaggtcaggcatgggtaaatgggcagcatatagggagatactggtcttcttatcgttcaccctcaacaggctgttctgataattgtgactacagaggagcttatgattcatggaaatgtttgaagaaatgtggtcaacctgctcaagtgttgtaccatgtaccacgcagttggttaaagccagaaaagaacttgcttgtgctgcatgaagagcttggtggtgacccttcaaaaatatctttctcaacgcgatctgggcaaacaatttgtgctcatgtatctgagttagatcctccacctgttgatacttggaagacagacaaagatcaaacatctcaagaaccttcattgcaactgaattgtgagccaggatggactatcaccgcagttaactttgctagctttggaactcctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="116345" stop="114333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116045" g_stop="115938" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115514" g_stop="115404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="219" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115217" g_stop="115006" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="431" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114897" g_stop="114633" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="696" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E698137" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116045" e_stop="115938"/>
          <exon e_start="115514" e_stop="115404"/>
          <exon e_start="115217" e_stop="115006"/>
          <exon e_start="114897" e_stop="114633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAGGTTCTTGATGTGACAAACAAATCCTTTTTATTATGTCCATTTCGTGCGGTCTTCATGTTCTTGTTTAAATATGATTTCACATTCCTAACTATAAAGTTAACAGTACAAGTAAATCAAATGCCAAAAAGAAACTCTAAGAGTACTTGAAGCAAACTAGGTAATATGAAAAGGGACAAAGGAAGTAACAAGTCAGTGAAAATATAAAGATGTGTGACAGTATCTTCTAACAAGAACATTAGAGGACTTTGTGTAAAGGAATAATGAAGCAGCATAACTATTGGTATAAATTTGAAGACTTCCTTTTCTTTTTCCGAATTCTCTTGGGGGTGAGGGGTTGATTCATTTTCGTCTCTGTAATCTCAGAAGGTTATGGCTTTGTTCTTGTAAGATCACAAGGATAATATGAAACTTGTCTTACTTCAGGTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAGGTGTGTAGAATTGCTTGGTTCACTTGTTTTATGTCAACTGCTTATCATTTAGGTACCTTTCTTCCGACAACAAAAGAAAAAAATACCTTTCTAGGAATAGAGTGGCAGTTAATGTCAATGCTGGTGCTAAGATAATTTGTTGCATCTGTTGTATTCTTCTCTTGATTCTGGATATCTTATTTCCAGACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTTGTGAGTATATAGCTTTGGCTAGTGTATTTTATTCTTGATGCTTTGCGTTTTCCTGATCCTCCTTGCAAATAGATTTCACCGAGTACTGACCATTAAACCTTCATATAGGTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACA</genome_strand>
        <mrna_strand>CGGAACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG..........................................................................................................................................................................................ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT............................................................................................................GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCCAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252450" ref_strand="+" ref_description="SGN-E252450 [cLEG-12-N20]">
      <seq>gtcttctttaaccgtgtttaataacttagataggaactccaatttgatcataacaacaaagtaaaagtatagtttttctgatcggttaagttttttgatgaggcggttcacacaactcaacggatccaagaagaagactaatatgcttcagtttttaccttgaacattacttaagactacagagaattgctaagatagctgatttggagccttctttaggatttggctatggtaatcatgatgatgcaagctttgtgctaagtaagaaaatccatcttaagcaaggaaacaacacagtggacatattgagcatgatggttggtttgcagaactatggaccatggtttgacatctctggagcaggtgtattttctgttatcttcagtgatttgaagaattccaagaatttttcttctacagaatggatctaccaggtaggtcttgaaggtgagtatcttggacttgataaagttagtcttgcaaatagttctctgtggattcaggggagttctgtcccagtacatcagagtttgatatggtacaagacaagtttttctcctccaaaatgaagaggccctatatcgctaaatctgtcaagtatgggtaaaggtcaggcatgggtaaatgggcagcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="116792" stop="114825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116492" g_stop="116164" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116163" i_stop="116043" i_length="121">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116042" g_stop="115938" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="434" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115514" g_stop="115404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="545" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115217" g_stop="115125" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="638" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E252450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116492" e_stop="116164"/>
          <exon e_start="116042" e_stop="115938"/>
          <exon e_start="115514" e_stop="115404"/>
          <exon e_start="115217" e_stop="115125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAGGTAAGTCCATCTCAGTAAATAGCCTATTCCAATGCTTTGCCTATTGAAGCACATATTATTGAAGTCATTGCTTCCACTTCAATTACATTAATTCTTACTCATTTTTCATGTGATTCTCCAGAACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAGGTTCTTGATGTGACAAACAAATCCTTTTTATTATGTCCATTTCGTGCGGTCTTCATGTTCTTGTTTAAATATGATTTCACATTCCTAACTATAAAGTTAACAGTACAAGTAAATCAAATGCCAAAAAGAAACTCTAAGAGTACTTGAAGCAAACTAGGTAATATGAAAAGGGACAAAGGAAGTAACAAGTCAGTGAAAATATAAAGATGTGTGACAGTATCTTCTAACAAGAACATTAGAGGACTTTGTGTAAAGGAATAATGAAGCAGCATAACTATTGGTATAAATTTGAAGACTTCCTTTTCTTTTTCCGAATTCTCTTGGGGGTGAGGGGTTGATTCATTTTCGTCTCTGTAATCTCAGAAGGTTATGGCTTTGTTCTTGTAAGATCACAAGGATAATATGAAACTTGTCTTACTTCAGGTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAGGTGTGTAGAATTGCTTGGTTCACTTGTTTTATGTCAACTGCTTATCATTTAGGTACCTTTCTTCCGACAACAAAAGAAAAAAATACCTTTCTAGGAATAGAGTGGCAGTTAATGTCAATGCTGGTGCTAAGATAATTTGTTGCATCTGTTGTATTCTTCTCTTGATTCTGGATATCTTATTTCCAGACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATA</genome_strand>
        <mrna_strand>GTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAG.........................................................................................................................AACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG..........................................................................................................................................................................................ACAAGTTTTTCTCCTCCAAAATGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325902" ref_strand="+" ref_description="SGN-E325902 [cTOC-12-K21]">
      <seq>gaaaattcgctggagtcagatccttggggctggtaccgagaggaagttggcatcgcgaataatcattcgtttgcatcaccgcgcttactagagcagataaatacaacaaaggataccagtgatttcctttggtatacaacaagtataaatgtggaggagaacatcaagaagaggaaagccaaagaattgcagttaatggttggaagcttaggacatgcagctcttgtttttgtaaacaagaaaccagttggtaactagctcatctaatctcgtcttctttaaccgtgtttaataacttagataggaactccaatttgatcataacaacaaagtaaaagtatagtttttctgatcggttaagttttttgatgaggcggttcacacaactcaacggatccaagaagaagactaatatgcttcagtttttaccttgaacattacttaagactacagagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="117260" stop="116005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116960" g_stop="116818" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116620" g_stop="116305" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="459" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E325902" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116960" e_stop="116818"/>
          <exon e_start="116620" e_stop="116305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAGGTAAATCCATTTTCCTTCACTTGTCATTGTTATGTTACATTTCTTTACGGAAGAAGCTGATCTGTAGCTGCTAATATTTTGCTTCCATGAGAAACTAAAGGGCATACCCCACCTTGGTTCTCTGGTTTAATCATTTGTTCAATATGATAAGCTATTTACTTCATTGATGTAATATCTCTTTTTCTTTCTCTTGCCAGTATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATT</genome_strand>
        <mrna_strand>GAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCGAGAGGAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG.....................................................................................................................................................................................................TATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313611" ref_strand="+" ref_description="SGN-E313611 [cTOA-12-M3]">
      <seq>aattttggtcgaacagctggaggtcctctagtagcaacaagctacgactatgatgcccccatagatgagtatggtttcataagtcagccaaagtggggccacctacgcgatttacacaaggctataaaacactgtgaagaatatttggtcaatgcagatccaattcatttgtcccttggtctgaaacttgaggcacatgtatattacaagagctccaatgactgtgcagccttccttgctaactatggtaacagttcagatgcaaatgttacatttaatgggaagtcatattttcttcatgcttggtctgttagcatccttccagactgtaagaatgtcatattcaacacggcgaaggttgtttcacaaaaaacgacaggaagtacagcatttactcacaacacggttactattgaaaattcgctggagtcagatccttggggctggtaccaagaaaaagttggcatcgcgaataatcattcgtttgcatcaccgcgcttactagagcagataaatacaacaaaggataccagtgatttcctttggtatacaacaagtataaatgtggaggagaacatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="118313" stop="116296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118013" g_stop="117941" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117836" g_stop="117718" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="192" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117390" g_stop="117226" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="357" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117017" g_stop="116818" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="557" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116620" g_stop="116596" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="582" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E313611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118013" e_stop="117941"/>
          <exon e_start="117836" e_stop="117718"/>
          <exon e_start="117390" e_stop="117226"/>
          <exon e_start="117017" e_stop="116818"/>
          <exon e_start="116620" e_stop="116596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATGGTAATGATATCTTAAATATAAGAGGAAGCATTTGATCTATTTAAGAATATCCTGAAGCTGCTTTTTGAATGCTATTCTAATCTAATCATACGTACTTGATACAGGTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAGGTAAATGACACATAGTGAGATGTCTTCGATCCAGATTTCAGCTGTTTAATAGATTAGAGGTAGATAACACACAAGTTTGAATCTAAAAAAACCGTAAAGAAAGTGTACAAGAAGCTAACTAAAAGGTGAGGATTGTCTAAGTTCATATAAGAAAACTTCAGCTCGTACCCTTAATCTATATGGGGTTGTACACCTCCTGCATGCTAGATATCTTATTTTTCCTCATCTGAATTAGCTTTTTTGTCAGCCTGTGAGTAACTATATTCTTTAATGTTGGATCAATGTCTCGTGTTCTTTTGATTTTGACACATCAGAAATGTCTAACAGGCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAGGTACTGACTGCAGTCACATAAGTACATCAATTCTTCCTACTCATTTACTAGAAATGCATAGAATAAATATCCTGATCACCTTGCTTATAACATTAAAACTGTGAAAGTGTAACTCATTTTTAAGAAACTTTACAGAAGTCTATTTTGCCTCAATTTTTGTTACTGCTAATCTAACAGACTTTTTTGCCTTTACTCATAATGAATAAAGGTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAGGTAAATCCATTTTCCTTCACTTGTCATTGTTATGTTACATTTCTTTACGGAAGAAGCTGATCTGTAGCTGCTAATATTTTGCTTCCATGAGAAACTAAAGGGCATACCCCACCTTGGTTCTCTGGTTTAATCATTTGTTCAATATGATAAGCTATTTACTTCATTGATGTAATATCTCTTTTTCTTTCTCTTGCCAGTATAAATGTGGAGGAGAACATCAAG</genome_strand>
        <mrna_strand>AATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG........................................................................................................GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG.......................................................................................................................................................................................................................................................................................................................................GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG................................................................................................................................................................................................................GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG.....................................................................................................................................................................................................TATAAATGTGGAGGAGAACATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313506" ref_strand="+" ref_description="SGN-E313506 [cTOA-12-K11]">
      <seq>aattttggtcgaacagctgtgtaggtcctctagtancaacaagctacgactatgatgcccccatagatgagtatgggggcgtgggtcagccaaagtggggccacctacncgatttacacaaggctataaaacactgtgaagaatatttggtcaatgcagatccaattcatttgtcccttggtctgaaacttgaggcacatgtatattacaagagctccaatgactgtgcagccttccttgctaactatggtaacagttcagatgcaaatgttacatttaatgggaagtcatattttcttcatgcttggtctgttagcatccttccagactgtaagaatgtcatattcaacacggcgaaggttgtttcacaaaaaacgacaggaagtacagcatttactcacaacacggttactattgaaaattcgctggagtcagatccttggggctggtaccaagaaaaagttggcatcgcgaataatcattcggttgcatcaccgcgcttactagagcagataaatacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="118313" stop="116552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118013" g_stop="117941" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117836" g_stop="117718" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="194" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117390" g_stop="117226" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="359" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117017" g_stop="116852" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="525" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E313506" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118013" e_stop="117941"/>
          <exon e_start="117836" e_stop="117718"/>
          <exon e_start="117390" e_stop="117226"/>
          <exon e_start="117017" e_stop="116852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGTCGAACAGCTG-G-AGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATGGTAATGATATCTTAAATATAAGAGGAAGCATTTGATCTATTTAAGAATATCCTGAAGCTGCTTTTTGAATGCTATTCTAATCTAATCATACGTACTTGATACAGGTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAGGTAAATGACACATAGTGAGATGTCTTCGATCCAGATTTCAGCTGTTTAATAGATTAGAGGTAGATAACACACAAGTTTGAATCTAAAAAAACCGTAAAGAAAGTGTACAAGAAGCTAACTAAAAGGTGAGGATTGTCTAAGTTCATATAAGAAAACTTCAGCTCGTACCCTTAATCTATATGGGGTTGTACACCTCCTGCATGCTAGATATCTTATTTTTCCTCATCTGAATTAGCTTTTTTGTCAGCCTGTGAGTAACTATATTCTTTAATGTTGGATCAATGTCTCGTGTTCTTTTGATTTTGACACATCAGAAATGTCTAACAGGCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAGGTACTGACTGCAGTCACATAAGTACATCAATTCTTCCTACTCATTTACTAGAAATGCATAGAATAAATATCCTGATCACCTTGCTTATAACATTAAAACTGTGAAAGTGTAACTCATTTTTAAGAAACTTTACAGAAGTCTATTTTGCCTCAATTTTTGTTACTGCTAATCTAACAGACTTTTTTGCCTTTACTCATAATGAATAAAGGTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAA</genome_strand>
        <mrna_strand>AATTTTGGTCGAACAGCTGTGTAGGTCCTCTAGTANCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG........................................................................................................GGGGCGTGGGTCAGCCAAAGTGGGGCCACCTACNCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG.......................................................................................................................................................................................................................................................................................................................................GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG................................................................................................................................................................................................................GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGGTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313612" ref_strand="+" ref_description="SGN-E313612 [cTOA-12-M7]">
      <seq>aattttggtcgaacagctggaggtcctctagtagcaacaagctacgactatgatgcccccatagatgagtatggtttcataagtcagccaaagtggggccacctacgcgatttacacaaggctataaaacactgtgaagaatatttggtcaatgcagatccaattcatttgtcccttggtctgaaacttgaggcacatgtatattacaagagctccaatgactgtgcagccttccttgctaactatggtaacagttcagatgcaaatgttacatttaatgggaagtcatattttcttcatgcttggtctgttagcatccttccagactgtaagaatgtcatattcaacacggcgaaggttgtttcacaaaaaacgacaggaagtacagcatttactcacaacacggttactattgaaaattcgctggagtcagatccttggggctggtaccaagaaaaagttggcatcgcgaataatcattcgtttgcatcaccgcgcttactagagcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="118313" stop="116562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118013" g_stop="117941" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117836" g_stop="117718" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="192" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.727" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117390" g_stop="117226" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="357" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117017" g_stop="116862" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="513" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E313612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118013" e_stop="117941"/>
          <exon e_start="117836" e_stop="117718"/>
          <exon e_start="117390" e_stop="117226"/>
          <exon e_start="117017" e_stop="116862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATGGTAATGATATCTTAAATATAAGAGGAAGCATTTGATCTATTTAAGAATATCCTGAAGCTGCTTTTTGAATGCTATTCTAATCTAATCATACGTACTTGATACAGGTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAGGTAAATGACACATAGTGAGATGTCTTCGATCCAGATTTCAGCTGTTTAATAGATTAGAGGTAGATAACACACAAGTTTGAATCTAAAAAAACCGTAAAGAAAGTGTACAAGAAGCTAACTAAAAGGTGAGGATTGTCTAAGTTCATATAAGAAAACTTCAGCTCGTACCCTTAATCTATATGGGGTTGTACACCTCCTGCATGCTAGATATCTTATTTTTCCTCATCTGAATTAGCTTTTTTGTCAGCCTGTGAGTAACTATATTCTTTAATGTTGGATCAATGTCTCGTGTTCTTTTGATTTTGACACATCAGAAATGTCTAACAGGCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAGGTACTGACTGCAGTCACATAAGTACATCAATTCTTCCTACTCATTTACTAGAAATGCATAGAATAAATATCCTGATCACCTTGCTTATAACATTAAAACTGTGAAAGTGTAACTCATTTTTAAGAAACTTTACAGAAGTCTATTTTGCCTCAATTTTTGTTACTGCTAATCTAACAGACTTTTTTGCCTTTACTCATAATGAATAAAGGTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATA</genome_strand>
        <mrna_strand>AATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG........................................................................................................GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG.......................................................................................................................................................................................................................................................................................................................................GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG................................................................................................................................................................................................................GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477292" ref_strand="+" ref_description="SGN-E477292 [cSTB-47-D14]">
      <seq>cctgattcagttataaacacatgtaatggattctattgtgatcgcttcactccaaattccccatccaagccaaagatgtggacagaaaactacgttggatggttccttgcatttggttatcctgttccttatcgacctgttgaagacttagcttttgctgttgcacgtttttttgaaactggtggtacatttcaaaactattacatgtattttggtggcaccaattttggtcgaacagcacgaggtcctctagtagcaacaagctaccactatgatgcccccatagatgagtatggtttcataagtcagccaaagtggggtcacctacgcgacttacacagggcaataaaacactgtgaagagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="118695" stop="117463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118603" g_stop="118592" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196">
            <donor d_prob="0.293" d_score="0.00"/>
            <acceptor a_prob="0.818" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118395" g_stop="118307" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="101" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118212" g_stop="118107" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="207" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118028" g_stop="117941" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="295" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117836" g_stop="117763" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="369" r_length="74" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E477292" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118603" e_stop="118592"/>
          <exon e_start="118395" e_stop="118307"/>
          <exon e_start="118212" e_stop="118107"/>
          <exon e_start="118028" e_stop="117941"/>
          <exon e_start="117836" e_stop="117763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTCAGTTGTAAGGGGGTTATGGTATTCATTTGCAGTATATCAGAAGCATTTTTGTTAGTATGTTACAAAATGCAGTCATCTCAAGACCCTTTTGCACTAAACTTCCTGCTGATGTTACCATTGATAGTTTTGCTTCTCAAAATCAACAGTGAAAGGACTCCAAAATTAGTGAAGTGATAACTGCAAACCTGTTGATTATGCAGATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATGGTAAATCTTCTTCCTCTTTTATTATCATCGGGAGCTCTGACTCATGACATGTTTTTTTCCTTCATCACTTGCAAGGTGTTGTTTTGTTTTGCAGGTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATGGTAAATACGTGTTACTATTCACATGTTGTTCTTGATCTTGTTAGTTCTGGGATAAGTAATGCCATCTATTTTGTTTAGTATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATGGTAATGATATCTTAAATATAAGAGGAAGCATTTGATCTATTTAAGAATATCCTGAAGCTGCTTTTTGAATGCTATTCTAATCTAATCATACGTACTTGATACAGGTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTG</genome_strand>
        <mrna_strand>CCTGATTCAGTT....................................................................................................................................................................................................ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCCATCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG..............................................................................................GTTCCTTGCATTTGGTTATCCTGTTCCTTATCGACCTGTTGAAGACTTAGCTTTTGCTGTTGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAACTATTACATG..............................................................................TATTTTGGTGGCACCAATTTTGGTCGAACAGCACGAGGTCCTCTAGTAGCAACAAGCTACCACTATGATGCCCCCATAGATGAGTATG........................................................................................................GTTTCATAAGTCAGCCAAAGTGGGGTCACCTACGCGACTTACACAGGGCAATAAAACACTGTGAAGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312358" ref_strand="+" ref_description="SGN-E312358 [cTOA-5-H13]">
      <seq>ctacacaaggaggtccaatcatactcgcgcaggtagaaaatgagtatggaaatgttgaatgggcatatggagtcagcggagagctatatgtaaaatgggctgcagaaactgctgttaatcttaatacgaccgtcccttgggtgatgtgtgcacaagaagatgcacctgattcagttataaacacatgtaatggattctattgtgatcgcttcactccaaattccctgtccaagccaaagatgtggacagaaaactacgttggatggttccttgcatttggttatcctgttccttttcgacctgttgaagacttggcttttgctgtagcacgtttttttgaaactggtggtacatttcaaaattattacatgtattttggtggcaccaattttggtcgaacagctggaggtcctctagtagcaacaagctacgactatgatgcccccatagatgagtatggtttcataagtcagccaaagtggggccacctacgcgatttacacaaggctataaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="119222" stop="117477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118922" g_stop="118891" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118890" i_stop="118736" i_length="155">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118735" g_stop="118592" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="176" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196">
            <donor d_prob="0.293" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118395" g_stop="118307" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118212" g_stop="118107" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="371" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118028" g_stop="117941" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="459" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="117836" g_stop="117777" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="519" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E312358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118922" e_stop="118891"/>
          <exon e_start="118735" e_stop="118592"/>
          <exon e_start="118395" e_stop="118307"/>
          <exon e_start="118212" e_stop="118107"/>
          <exon e_start="118028" e_stop="117941"/>
          <exon e_start="117836" e_stop="117777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTTGTAAGGGGGTTATGGTATTCATTTGCAGTATATCAGAAGCATTTTTGTTAGTATGTTACAAAATGCAGTCATCTCAAGACCCTTTTGCACTAAACTTCCTGCTGATGTTACCATTGATAGTTTTGCTTCTCAAAATCAACAGTGAAAGGACTCCAAAATTAGTGAAGTGATAACTGCAAACCTGTTGATTATGCAGATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATGGTAAATCTTCTTCCTCTTTTATTATCATCGGGAGCTCTGACTCATGACATGTTTTTTTCCTTCATCACTTGCAAGGTGTTGTTTTGTTTTGCAGGTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATGGTAAATACGTGTTACTATTCACATGTTGTTCTTGATCTTGTTAGTTCTGGGATAAGTAATGCCATCTATTTTGTTTAGTATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATGGTAATGATATCTTAAATATAAGAGGAAGCATTTGATCTATTTAAGAATATCCTGAAGCTGCTTTTTGAATGCTATTCTAATCTAATCATACGTACTTGATACAGGTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACT</genome_strand>
        <mrna_strand>CTACACAAGGAGGTCCAATCATACTCGCGCAG...........................................................................................................................................................GTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTT....................................................................................................................................................................................................ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG..............................................................................................GTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATG..............................................................................TATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG........................................................................................................GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476169" ref_strand="+" ref_description="SGN-E476169 [cSTB-43-F15]">
      <seq>gtaaaatgggctgcagaaactgctgttagtcttaatacgactgttccttgggtgatgtgtgcacaagaagatgcacctgattcagtgataaacacatgtaatggattctattgtgatcgcttcactccaaattccccatccaagccaaagatgtggacagaaaactacgttggatggttccttgcatttggttatcctgttccttatcgacctgttgaagacttagcttttgctgttgcacgtttttttgaaactggtggcacatttcaaaattattacatgtattttggtggcaccaattttggtcgaacagccggaggtcctctagtagcaacaagctacgactatgatgcccccatagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="118978" stop="117645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118678" g_stop="118592" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196">
            <donor d_prob="0.293" d_score="0.94"/>
            <acceptor a_prob="0.818" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118395" g_stop="118307" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="176" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118212" g_stop="118107" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="282" r_length="106" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118028" g_stop="117946" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="365" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E476169" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118678" e_stop="118592"/>
          <exon e_start="118395" e_stop="118307"/>
          <exon e_start="118212" e_stop="118107"/>
          <exon e_start="118028" e_stop="117946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTTGTAAGGGGGTTATGGTATTCATTTGCAGTATATCAGAAGCATTTTTGTTAGTATGTTACAAAATGCAGTCATCTCAAGACCCTTTTGCACTAAACTTCCTGCTGATGTTACCATTGATAGTTTTGCTTCTCAAAATCAACAGTGAAAGGACTCCAAAATTAGTGAAGTGATAACTGCAAACCTGTTGATTATGCAGATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATGGTAAATCTTCTTCCTCTTTTATTATCATCGGGAGCTCTGACTCATGACATGTTTTTTTCCTTCATCACTTGCAAGGTGTTGTTTTGTTTTGCAGGTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATGGTAAATACGTGTTACTATTCACATGTTGTTCTTGATCTTGTTAGTTCTGGGATAAGTAATGCCATCTATTTTGTTTAGTATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGA</genome_strand>
        <mrna_strand>GTAAAATGGGCTGCAGAAACTGCTGTTAGTCTTAATACGACTGTTCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTG....................................................................................................................................................................................................ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCCATCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG..............................................................................................GTTCCTTGCATTTGGTTATCCTGTTCCTTATCGACCTGTTGAAGACTTAGCTTTTGCTGTTGCACGTTTTTTTGAAACTGGTGGCACATTTCAAAATTATTACATG..............................................................................TATTTTGGTGGCACCAATTTTGGTCGAACAGCCGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735623" ref_strand="+" ref_description="SGN-E735623 [LC02BD06]">
      <seq>cttaactatggaaagtaagaaattgttgttggtaataatattgtctatgcttttagtttttgaaaaaggggcgtcgacgacagtaacttatgatcacaaggcattggttattgatggaaagaggagaattttgcaatcaggatcaatacattatccaagaactacacctgaaatatggccagagatcattagaaaggctaaggaaggcggattggacgtgatagagagttatgttttctggaattatcatgaacctgtcaaaggagagtactactttgaaggcaggtttgaccttgtacggtttgtgaagacagtacaagaagctggcctatacgtgcatctccgtataggtccatatgcctgtgctgaatggaactatgggggcttccctatgtggctacactttatccctggaataaagtttcgaacaacaaatgaactttttaagaatgaaatgaaactctttcttgccaagattgttgatcttatgaaggatgagaacctcttcgctacacaaggaggtccaatcatactcgctcaggttgtttctttcatctttgtgatgatggatgtctttgtggtagtttaaatcttcttccttgaatctacactcttattacttgatagtgcaccttcttcttttcaattttagttgttgcattttttgtgttaatcagtgatctatcctcttaacaggtagaaaatgagtatggaaatgttgaatgggcatatggagtcagcggagagctatatgtaaaatgggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="120219" stop="118365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119919" g_stop="119748" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119747" i_stop="119633" i_length="115">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119632" g_stop="119537" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="268" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119536" i_stop="119359" i_length="178">
            <donor d_prob="0.768" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119358" g_stop="119246" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="381" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119245" i_stop="119146" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.766" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119145" g_stop="119079" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="448" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119078" i_stop="118984" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118983" g_stop="118665" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="767" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E735623" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119919" e_stop="119748"/>
          <exon e_start="119632" e_stop="119537"/>
          <exon e_start="119358" e_stop="119246"/>
          <exon e_start="119145" e_stop="119079"/>
          <exon e_start="118983" e_stop="118665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACTATGGAAAGTAAGAAATTGTTGTTGGTAATAATATTGTCTATGCTTTTAGTTTTTGAAAAAGGGGCGTCGACGACAGTAACTTATGATCACAAGGCATTGGTTATTGATGGAAAGAGGAGAATTTTGCAATCAGGATCAATACATTATCCAAGAACTACACCTGAAGTGAGTGTTTTCTTCTTATGTATGGCAATGTGGGGTTTTCTCTTTTCTTCTTGATTTTCAGTTTGAGAATATGTAACATGGATTATAAAGGGGTTCGATCTCTTGTTGAATGTAGATATGGCCAGAGATCATTAGAAAGGCTAAGGAAGGCGGATTGGACGTGATAGAGAGTTATGTTTTCTGGAATTATCATGAACCTGTCAAAGGAGAGGTATGAAGTCATTTCAAGTTTGTGTTTTTACGCGAGTTTGATTGGTCTCCCCCCTTGCGATGCTCACTAGTTGGAATTTTTATCTGTCAATTTAGCCCATAGGAAGTTGTTTTACCTCATTTTTGGGCAATGCAATTAGAGCAGTGTCAATTTTAATTATCACTTCCTACTCTTGCAGTACTACTTTGAAGGCAGGTTTGACCTTGTACGGTTTGTGAAGACAGTACAAGAAGCTGGCCTATACGTGCATCTCCGTATAGGTCCATATGCCTGTGCTGAATGGAACTATGGGTTAGTTCATCATAGCTAACTCATTTTCTTATTTTATCATGTACATCCTAATGGGGTCTTAACTTTTCGTTTTACTATCTCCGTCCTGTTCTCTGAGCAGGGGCTTCCCTATGTGGCTACACTTTATCCCTGGAATAAAGTTTCGAACAACAAATGAACTTTTTAAGGAAAGTGTTGACCAGTCTGTGTTTTTTTTTTCTTCTATTTTTTGGTCCTATTAAATGTTCAATAGTTGAAGAAACCTGTATTGTTTTCAATGCAGAATGAAATGAAACTCTTTCTTGCCAAGATTGTTGATCTTATGAAGGATGAGAACCTCTTCGCTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGC</genome_strand>
        <mrna_strand>CTTAACTATGGAAAGTAAGAAATTGTTGTTGGTAATAATATTGTCTATGCTTTTAGTTTTTGAAAAAGGGGCGTCGACGACAGTAACTTATGATCACAAGGCATTGGTTATTGATGGAAAGAGGAGAATTTTGCAATCAGGATCAATACATTATCCAAGAACTACACCTGAA...................................................................................................................ATATGGCCAGAGATCATTAGAAAGGCTAAGGAAGGCGGATTGGACGTGATAGAGAGTTATGTTTTCTGGAATTATCATGAACCTGTCAAAGGAGAG..................................................................................................................................................................................TACTACTTTGAAGGCAGGTTTGACCTTGTACGGTTTGTGAAGACAGTACAAGAAGCTGGCCTATACGTGCATCTCCGTATAGGTCCATATGCCTGTGCTGAATGGAACTATGG....................................................................................................GGGCTTCCCTATGTGGCTACACTTTATCCCTGGAATAAAGTTTCGAACAACAAATGAACTTTTTAAG...............................................................................................AATGAAATGAAACTCTTTCTTGCCAAGATTGTTGATCTTATGAAGGATGAGAACCTCTTCGCTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706771" ref_strand="+" ref_description="SGN-E706771 [FA30DE07]">
      <seq>cgaatacatttttcatgtttctagactcagttaaagaatgctatgaggctgtggcaattgccaaatttttggctttgatgtatagttatttgaatatatccatcagcaaaaacattgtgcctgatgaaatcaaggggagggaaattcatcattcctttccgatgactctatttcagcctcgcactgctcacttagatcaccggacactgaaacttctcaagcattggacatggcagtttgtcattatccgtccagcatgctctatcttgatgatcacgttgcagattcttgggttgtatccgaattggctcagctggacgtttaccatcattctcaatatttcattctcagtggccatgtactccttggttgttttctaccatgttttctcaaaggaactgcagccacacaaaccactttcaaagttcatctgcattaaagggatagttttcttcagcttttggcaggggttgctggttaaaattctagtctcgtggggaattatcaaatctcaccatttttggttggatgtggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="127238" stop="131108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127538" g_stop="127590" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127591" i_stop="127712" i_length="122">
            <donor d_prob="0.409" d_score="0.98"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127713" g_stop="127835" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="176" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127836" i_stop="128498" i_length="663">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128499" g_stop="128789" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="467" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128790" i_stop="130429" i_length="1640">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130430" g_stop="130808" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="846" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E706771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127538" e_stop="127590"/>
          <exon e_start="127713" e_stop="127835"/>
          <exon e_start="128499" e_stop="128789"/>
          <exon e_start="130430" e_stop="130808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTGGTAAGTTGCTACCGTGTGATTGACATGCCTTTGTTAATGGCGCATACGCTGTCTAATCGTATGCTTTCTAGTTTGACAGAAAAAATAAAGCAAAACATGTTTCATTTGATGTCTTTTTTCAGGCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAGGTGTGATTATACTTATGTTTAGCTTTCCTCTCAATATGTGCCAGATGATTATGCATTCAATGTATTTATAACTGATATCAAAATTAGTCTCCCTACCCCACAAAGGTAGGGTAAGGTTTGTGTACATCCTACCCCCTCCCCAAACCCCACTTGTGGGATTACGCTAGGTATGTTGTTGTAACCATTGCGTTTGAATCTAACCACTATTGGACTTTCCCCCTTTAGTGTTTACTGTGTGATAATATCATTTTGAAGAACTTTAGGGGCAAGGGGAAGTCTATCCCCCAGTATATTTCTTTTTATTCTGAAGCACATGGCTTCTAGTCGTCTAAGATAGACAACCAAGTTATTTGAGTTATTACCTAATGTAACCAATTAATTATAATGACTCTATATCCTAAAGAAATTATATTAATCAGATCCAGTCTAAGTGCAGATATAAACTGCTTGCTCTTTCATATCCGGATGACTTGGAGGCTTGGCTTGCTAACACTTACATAAGTTTTCTTGTAATCTGGGTGATGTGAGATATTAGGTTGAAGTTTGTCAGTTGTTTAATTGAGCTTATGCCTTTCTTACTCAATTTCACTAGAGTGATTGATAAAGTAGTATTAGAATGGTGTATTTTAACCATGCATCTAATGTTCTTCCTGCCAATTGCAGCCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAGGTAGAGACTCCAACTCATCTCCTCTTACCCCCCCCCCCCCCCCAAAATCTAGAAATAAAATTAATCCTTATCCGTCTCTTGAAGTTTTGGTCAAGGTAAGTGAATGCAACTATTTGTTTTACATATGTGATAATTATTTATGCTAAGATCGACATCCTGTCAGCGATGGCTTTCTTTGCTTTTCACTTTTTAAAGCGTTAATTGAAAGAAAGGATGAAAATATTTGTAATCTATAGAGGCAGGCAGGCAGCATAAGGTTATAGTAGCCCTACTCCCAAGGGCATGATTGACTGGTTGAGGTGTAAGAGTAGCGAGGTTTGAATACCCAGTACGAAGCGTAAAACCAAATCCAAAATATGTCAAGTCTTGCAATTCATAACTAGTTATAGAAGTCCCTTAATGAGTTTCTCGTTACATGTACTGAAATGGAGCCAAGCCTTTAAGGGACTTCTATTACTAATTATAAATCAAAAGACTTGACTTATTTTAGATTTGGTTTTACCTACGTGTAAGTTTCTGCTAATTTTGACCAACAATCAATACTTATTAAGTTCCTCTGATGCTGTTTCCTCACTGCGTCTTTGTGGGAGTGGTATTGGGCAGGAGGCACAGATTTTGCTTATTTGCAGGGATGGACTTCATTTGGGTTTTGCCTCATGCCAAACCTTTTACTGTTATCCTCTACATCTGTGTGTAAACCTGTAATGGAACCAAAACACACCAAGGGACACTGAACTATCTATGTACTTCTAGGTTTATCTGTAGCTTGGGAAAATGATTTCTATATGGAGGACTCGGTTTCATTATTTCATTATTTAGACAAACAATATGTAAAAATCTGTGTTGCTCGGACTCTTCAAAAATGTTGCGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGTAATGTGACGCGGGTGCAACATCGAAAGTGAATAGTCCATGCAACTTAGGTCAGGATGATTGAGACATAGAAGAGTGCACAGATGGGTTCTGCGGTTGAGCTCACATTTTATCTGGCCAAACAAGTGAAAATTAAAGGTCTTTAATATGTCTGCCTCCAACCTCCTCTAAAAGGTTGTCATTAGGAGTAGATAGCTGTTAATCTCTTACAATAATCTCCTCTGAAGTTTGATTGGTGGATGGATATCCATTGTGTGAGTTTGAGGCATGGAATCACTGCAATGAACTGATCATAGGATAATATAAGTGAATCCTGTTAGTTGCTGCAGGGAAACGTGATGTAAAGGTTAGCCTCATGTCACGAGTTCAAACCCTGACGCAGACCAACGGCAAGGTATTTAAGTGGAGAAAGGTCTAGAGCAGATCCATTATCCACTGAGATTCAAATCACGAGCCACTGACTCTCGGGATTTCTAGGTTATAAAAAAAATGGTGTGTCCTGCTAGCCAACAATCATCATCAAGCAAAGGATACAAACTACCACCACTAAAATATTGAATCCTCTTGACTTGCATGCCATTACTTTTGAAATTCTTTCAACTTCTCAAAAAGGAGGTATTGGTTTCTTTGTTATGTTGTTTCTGTGAGGAAGCCTCTCTCCGTTCGATGCTTTGCTTGACTGAGATATGTTTTTGCCACCACTGGTGCAATAAACTATTCATCTCTGAATTTTGCAGGGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTA</genome_strand>
        <mrna_strand>CGAATACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTG..........................................................................................................................GCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706577" ref_strand="+" ref_description="SGN-E706577 [FA30BD08]">
      <seq>aaacatttttcatgtttctagactcagttaaagaatgctatgaggctgtggcaattgccaaatttttggctttgatgtatagttatttgaatatatccatcagcaaaaacattgtgcctgatgaaatcaaggggagggaaattcatcattcctttccgatgactctatttcagcctcgcactgctcacttagatcaccggacactgaaacttctcaagcattggacatggcagtttgtcattatccgtccagcatgctctatcttgatgatcacgttgcagattcttgggttgtatccgaattggctcagctggacgtttaccatcattctcaatatttcattctcagtggccatgtactccttggttgttttctaccatgttttctcaaaggaactgcagccacacaaaccactttcaaagttcatctgcattaaagggatagttttcttcagcttttggcaggggttgctggttaaaattctagtctcgtggggaattatcaaatctcaccatttttggttggatgtggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="127241" stop="131135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127541" g_stop="127590" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127591" i_stop="127712" i_length="122">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127713" g_stop="127835" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="173" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127836" i_stop="128498" i_length="663">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128499" g_stop="128789" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="464" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128790" i_stop="130429" i_length="1640">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130430" g_stop="130835" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="870" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E706577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127541" e_stop="127590"/>
          <exon e_start="127713" e_stop="127835"/>
          <exon e_start="128499" e_stop="128789"/>
          <exon e_start="130430" e_stop="130835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTGGTAAGTTGCTACCGTGTGATTGACATGCCTTTGTTAATGGCGCATACGCTGTCTAATCGTATGCTTTCTAGTTTGACAGAAAAAATAAAGCAAAACATGTTTCATTTGATGTCTTTTTTCAGGCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAGGTGTGATTATACTTATGTTTAGCTTTCCTCTCAATATGTGCCAGATGATTATGCATTCAATGTATTTATAACTGATATCAAAATTAGTCTCCCTACCCCACAAAGGTAGGGTAAGGTTTGTGTACATCCTACCCCCTCCCCAAACCCCACTTGTGGGATTACGCTAGGTATGTTGTTGTAACCATTGCGTTTGAATCTAACCACTATTGGACTTTCCCCCTTTAGTGTTTACTGTGTGATAATATCATTTTGAAGAACTTTAGGGGCAAGGGGAAGTCTATCCCCCAGTATATTTCTTTTTATTCTGAAGCACATGGCTTCTAGTCGTCTAAGATAGACAACCAAGTTATTTGAGTTATTACCTAATGTAACCAATTAATTATAATGACTCTATATCCTAAAGAAATTATATTAATCAGATCCAGTCTAAGTGCAGATATAAACTGCTTGCTCTTTCATATCCGGATGACTTGGAGGCTTGGCTTGCTAACACTTACATAAGTTTTCTTGTAATCTGGGTGATGTGAGATATTAGGTTGAAGTTTGTCAGTTGTTTAATTGAGCTTATGCCTTTCTTACTCAATTTCACTAGAGTGATTGATAAAGTAGTATTAGAATGGTGTATTTTAACCATGCATCTAATGTTCTTCCTGCCAATTGCAGCCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAGGTAGAGACTCCAACTCATCTCCTCTTACCCCCCCCCCCCCCCCAAAATCTAGAAATAAAATTAATCCTTATCCGTCTCTTGAAGTTTTGGTCAAGGTAAGTGAATGCAACTATTTGTTTTACATATGTGATAATTATTTATGCTAAGATCGACATCCTGTCAGCGATGGCTTTCTTTGCTTTTCACTTTTTAAAGCGTTAATTGAAAGAAAGGATGAAAATATTTGTAATCTATAGAGGCAGGCAGGCAGCATAAGGTTATAGTAGCCCTACTCCCAAGGGCATGATTGACTGGTTGAGGTGTAAGAGTAGCGAGGTTTGAATACCCAGTACGAAGCGTAAAACCAAATCCAAAATATGTCAAGTCTTGCAATTCATAACTAGTTATAGAAGTCCCTTAATGAGTTTCTCGTTACATGTACTGAAATGGAGCCAAGCCTTTAAGGGACTTCTATTACTAATTATAAATCAAAAGACTTGACTTATTTTAGATTTGGTTTTACCTACGTGTAAGTTTCTGCTAATTTTGACCAACAATCAATACTTATTAAGTTCCTCTGATGCTGTTTCCTCACTGCGTCTTTGTGGGAGTGGTATTGGGCAGGAGGCACAGATTTTGCTTATTTGCAGGGATGGACTTCATTTGGGTTTTGCCTCATGCCAAACCTTTTACTGTTATCCTCTACATCTGTGTGTAAACCTGTAATGGAACCAAAACACACCAAGGGACACTGAACTATCTATGTACTTCTAGGTTTATCTGTAGCTTGGGAAAATGATTTCTATATGGAGGACTCGGTTTCATTATTTCATTATTTAGACAAACAATATGTAAAAATCTGTGTTGCTCGGACTCTTCAAAAATGTTGCGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGTAATGTGACGCGGGTGCAACATCGAAAGTGAATAGTCCATGCAACTTAGGTCAGGATGATTGAGACATAGAAGAGTGCACAGATGGGTTCTGCGGTTGAGCTCACATTTTATCTGGCCAAACAAGTGAAAATTAAAGGTCTTTAATATGTCTGCCTCCAACCTCCTCTAAAAGGTTGTCATTAGGAGTAGATAGCTGTTAATCTCTTACAATAATCTCCTCTGAAGTTTGATTGGTGGATGGATATCCATTGTGTGAGTTTGAGGCATGGAATCACTGCAATGAACTGATCATAGGATAATATAAGTGAATCCTGTTAGTTGCTGCAGGGAAACGTGATGTAAAGGTTAGCCTCATGTCACGAGTTCAAACCCTGACGCAGACCAACGGCAAGGTATTTAAGTGGAGAAAGGTCTAGAGCAGATCCATTATCCACTGAGATTCAAATCACGAGCCACTGACTCTCGGGATTTCTAGGTTATAAAAAAAATGGTGTGTCCTGCTAGCCAACAATCATCATCAAGCAAAGGATACAAACTACCACCACTAAAATATTGAATCCTCTTGACTTGCATGCCATTACTTTTGAAATTCTTTCAACTTCTCAAAAAGGAGGTATTGGTTTCTTTGTTATGTTGTTTCTGTGAGGAAGCCTCTCTCCGTTCGATGCTTTGCTTGACTGAGATATGTTTTTGCCACCACTGGTGCAATAAACTATTCATCTCTGAATTTTGCAGGGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTAC</genome_strand>
        <mrna_strand>AAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTG..........................................................................................................................GCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592389" ref_strand="-" ref_description="SGN-E592389 [46122]">
      <seq>gtccagcatgctctatcttgatgatcacgttacagattcttgggttgtatccgagttggctcagctggacgtttaccatcattctcaatatttcattctcagtggccatgtactccttggttgttttctaccatgttttctcaaaggaactgcagccacacaaaccactttcaaagttcatctgcatcaaagggatagttttcttcagcttttggcaggggttgctggttaaaattctagtctcgtggggaattatcaaatctcaccatttttggttggatgtggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccatgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagttgatgcacaagacattggtgtgaatagacacttcctctgtgatcttgcatttaccaccagtaacagtgtgtaatgcaagtttttgttgttgtgtaacctattgatacgattcagagaggtctcaagataattaattttcgtgtgttagtaaagaagatagaaatttctttcattttctctgacaaccagtttttactcatttgtggttgggacttcttaaagttgcatcagtcgtttttcttcatgagaggctggtgtncctggcggcacctgcaacaagcttgattgtgactttgtaagtatatattttcttgagaatatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="128272" stop="131260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128572" g_stop="128789" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128790" i_stop="130429" i_length="1640">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130430" g_stop="130933" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="722" r_length="504" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E592389" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592389" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128572" e_stop="128789"/>
          <exon e_start="130430" e_stop="130933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAGGTAGAGACTCCAACTCATCTCCTCTTACCCCCCCCCCCCCCCCAAAATCTAGAAATAAAATTAATCCTTATCCGTCTCTTGAAGTTTTGGTCAAGGTAAGTGAATGCAACTATTTGTTTTACATATGTGATAATTATTTATGCTAAGATCGACATCCTGTCAGCGATGGCTTTCTTTGCTTTTCACTTTTTAAAGCGTTAATTGAAAGAAAGGATGAAAATATTTGTAATCTATAGAGGCAGGCAGGCAGCATAAGGTTATAGTAGCCCTACTCCCAAGGGCATGATTGACTGGTTGAGGTGTAAGAGTAGCGAGGTTTGAATACCCAGTACGAAGCGTAAAACCAAATCCAAAATATGTCAAGTCTTGCAATTCATAACTAGTTATAGAAGTCCCTTAATGAGTTTCTCGTTACATGTACTGAAATGGAGCCAAGCCTTTAAGGGACTTCTATTACTAATTATAAATCAAAAGACTTGACTTATTTTAGATTTGGTTTTACCTACGTGTAAGTTTCTGCTAATTTTGACCAACAATCAATACTTATTAAGTTCCTCTGATGCTGTTTCCTCACTGCGTCTTTGTGGGAGTGGTATTGGGCAGGAGGCACAGATTTTGCTTATTTGCAGGGATGGACTTCATTTGGGTTTTGCCTCATGCCAAACCTTTTACTGTTATCCTCTACATCTGTGTGTAAACCTGTAATGGAACCAAAACACACCAAGGGACACTGAACTATCTATGTACTTCTAGGTTTATCTGTAGCTTGGGAAAATGATTTCTATATGGAGGACTCGGTTTCATTATTTCATTATTTAGACAAACAATATGTAAAAATCTGTGTTGCTCGGACTCTTCAAAAATGTTGCGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGTAATGTGACGCGGGTGCAACATCGAAAGTGAATAGTCCATGCAACTTAGGTCAGGATGATTGAGACATAGAAGAGTGCACAGATGGGTTCTGCGGTTGAGCTCACATTTTATCTGGCCAAACAAGTGAAAATTAAAGGTCTTTAATATGTCTGCCTCCAACCTCCTCTAAAAGGTTGTCATTAGGAGTAGATAGCTGTTAATCTCTTACAATAATCTCCTCTGAAGTTTGATTGGTGGATGGATATCCATTGTGTGAGTTTGAGGCATGGAATCACTGCAATGAACTGATCATAGGATAATATAAGTGAATCCTGTTAGTTGCTGCAGGGAAACGTGATGTAAAGGTTAGCCTCATGTCACGAGTTCAAACCCTGACGCAGACCAACGGCAAGGTATTTAAGTGGAGAAAGGTCTAGAGCAGATCCATTATCCACTGAGATTCAAATCACGAGCCACTGACTCTCGGGATTTCTAGGTTATAAAAAAAATGGTGTGTCCTGCTAGCCAACAATCATCATCAAGCAAAGGATACAAACTACCACCACTAAAATATTGAATCCTCTTGACTTGCATGCCATTACTTTTGAAATTCTTTCAACTTCTCAAAAAGGAGGTATTGGTTTCTTTGTTATGTTGTTTCTGTGAGGAAGCCTCTCTCCGTTCGATGCTTTGCTTGACTGAGATATGTTTTTGCCACCACTGGTGCAATAAACTATTCATCTCTGAATTTTGCAGGGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAG---GAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTT-AGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTT</genome_strand>
        <mrna_strand>GTCCAGCATGCTCTATCTTGATGATCACGTTACAGATTCTTGGGTTGTATCCGAGTTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATCAAAGGGATAGTTTTCTTCAGCTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCATGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTTGATGCACAAGACATTGGTGTGAATAGACAC--TTCCTCTGTGATCTTGCATTTACCACCAGTAACAGTGTGTAATGCAAGTTTTTGTTGTTGTGTAACCTATTGATACGATTCAGAGAGGTCTCAAGATAATTAATTTT--CGTGTGTTAGTAAAGAAGATAGAAATTTCTTTCATTTTCTCTGACAACCAGTTTTTACTCATTTGTGGTTGGGACTTCTTAAAGTTGCATCAGTCGTTTTTCTTCATGAGAGGCTGGTGTNCCTGGCGGCACCTGCAACAAGCTTGATTGTGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614185" ref_strand="+" ref_description="SGN-E614185 [63968]">
      <seq>tcaaatctcaccatttttggttggatgtggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccatgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagttgatgcacaagacattggtgtgaatagacacttcctctgtgatcttgcatttaccactagtaacagtgtgtaatgcaagtttttgttgttgtgtaacctattgatacgattcagagaggtcttaagataattaattttcatgtgttagttagcaaagaagatagaaatttctatcattttctctgacaaccagttttactcatttgtggttggacttcttctagttgcatcagagtaatttttcttcacgagaggctggtgcccctgccggcacctgcaacaagcttgattgcaactttgtaagtatacattttcttaattatcgtgagaatatcatgactatggtctgagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130167" stop="131284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130467" g_stop="130977" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="535"/>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E614185" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130467" e_stop="130977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTG-T-GTTAGCAAAGAAG---GAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATC--AGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTAT</genome_strand>
        <mrna_strand>TCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCATGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTTGATGCACAAGACATTGGTGTGAATAGACAC--TTCCTCTGTGATCTTGCATTTACCACTAGTAACAGTGTGTAATGCAAGTTTTTGTTGTTGTGTAACCTATTGATACGATTCAGAGAGGTCTTAAGATAATTAATTTTCATGTGTTAGTTAGCAAAGAAGATAGAAATTTCTATCATTTTCTCTGACAACCAG-TTTTACTCATTTGTGGTTGGACTTCTTCTAGTTGCATCAGAGTAATTTTTCTTCACGAGAGGCTGGTGCCCCTGCCGGCACCTGCAACAAGCTTGATTGCAACTTTGTAAGTATACATTTTCTTAATTATCGTGAGAATATCATGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349930" ref_strand="+" ref_description="SGN-E349930 [cTOS-3-L15]">
      <seq>tggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130194" stop="131290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130494" g_stop="131001" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E349930" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130494" e_stop="131001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</genome_strand>
        <mrna_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350316" ref_strand="+" ref_description="SGN-E350316 [cTOS-5-G11]">
      <seq>tggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130194" stop="131290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130494" g_stop="131001" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E350316" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130494" e_stop="131001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</genome_strand>
        <mrna_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350441" ref_strand="+" ref_description="SGN-E350441 [cTOS-5-D18]">
      <seq>tggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130194" stop="131290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130494" g_stop="131001" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E350441" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130494" e_stop="131001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</genome_strand>
        <mrna_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350637" ref_strand="+" ref_description="SGN-E350637 [cTOS-7-A13]">
      <seq>tggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130194" stop="131290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130494" g_stop="131001" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E350637" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130494" e_stop="131001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</genome_strand>
        <mrna_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356276" ref_strand="+" ref_description="SGN-E356276 [cTOS-20-P8]">
      <seq>tggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="130194" stop="131290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130494" g_stop="131001" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E356276" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130494" e_stop="131001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</genome_strand>
        <mrna_strand>TGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435023" ref_strand="+" ref_description="SGN-E435023 [STM-60-J10]">
      <seq>gtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgtacttttggccggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttctccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgatggacggtttgtcttctcaggagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcagaactctncagtgtcatgacggggtctgtattggtgcagagtggcatcctctggaacaaagtaaagttgctacttgtggttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="135382" stop="134105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135082" g_stop="134405" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E435023" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135082" e_stop="134405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGA</genome_strand>
        <mrna_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACCTTCACGACAGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGTACTTTTGGCCGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCTCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTATAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTNCAGTGTCATGACGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408807" ref_strand="+" ref_description="SGN-E408807 [PPI-12-C12]">
      <seq>gtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaaccttcacgacaggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgtacttttggccggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataataggaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttctccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagtacgcgagagagatttcagctgaaataaaagaaagatttgctggacacattgtcgctggttatgcctgccaggtcaatttctcacctgatggacggnttgtcttctcangagatggtgaaggcagatgctggttttgggaatggaaatcgtgtaaggcttcagaactctcagtgtcatgacggggtctgtattggtgcagagtggcatcctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="135382" stop="134136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135082" g_stop="134436" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E408807" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135082" e_stop="134436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGG</genome_strand>
        <mrna_strand>GTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACCTTCACGACAGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAGGATAAGCAGAATGTACTTTTGGCCGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAATAGGAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCTCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTATAGTACGCGAGAGAGATTTCAGCTGAAATAAAAG-AAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGNTTGTCTTCTCANGAGATGGTGAAGGCAGATGCTGGTTTTGGGAATGGAAATCGTGTAAGG-CTTCAGAACTCTC-AGTGTCATGACGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710509" ref_strand="+" ref_description="SGN-E710509 [FA55CF08]">
      <seq>gtttttccctaagcatggtcatttgattttgtcagctgggatggatacaaaggtgaaaatttgggatgtttacaattccggtaaatgtatgaggacttacatggggcatacaaaggcagtgagggatatttggtttagcaatgacgggacgaagtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaacgttcacgacgggtaagataccctatgtggtgaggcttaatcctgatgaagataagcagaatgtacttttggctggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataacagaaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttcgccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttacagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgccctgccaggtcaatttctcacctgatggacggtttgtcttctcaagagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcaaaactctcaagtgtcatgatggggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="135535" stop="134163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135235" g_stop="134463" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E710509" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135235" e_stop="134463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATG-CCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCT</genome_strand>
        <mrna_strand>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAAGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAAAACTCTCAAGTGTCATGATGGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341300" ref_strand="+" ref_description="SGN-E341300 [cTOE-22-L9]">
      <seq>ttttacaatcttcatacgaggatgaatcgccggattcttccccaatacgcatgcttccttctaaatccgccgcccctaaagtcgacgacaccatgctagccctaacagtcgccggcgaagctgccagagctcaatccaaaccccttgacccgacccagcacgttgttggattcaacccgacgtacgaacaactatgggcaccaatttgtggtccagctcacccgtacgcaaaggacgggttagctcaaggactcagaaatcacaagttagggttcgtagaggacgcgtctattgagccctttgtattcgatgagcagtacaatacttttcagaagtatgggtacgctgttgatccctctgaaaatagctacatcggtgatttggaaaaaatgaaggaatgtgatgcaatttctgtgtataacataccacagcatgaacagaagaagaggaagttagagaagaagaaggaaaaaatggaggaggagggtgatgagcangatgtggatatgacggaagttgaaaatccgtccaccgacacatggttgatgaagaacaggaagagtccatgggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="-" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="136385" stop="135212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136085" g_stop="135512" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="-" ref_id="SGN-E341300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136085" e_stop="135512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCAGGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGG</genome_strand>
        <mrna_strand>TTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCANGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0090O01-CLZi5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0090O01.2" temp_strand="+" temp_description="C02HBa0090O01.2  AC215380.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0090O01 sequenced_by:kribb upload_account_name:korea">
        <position start="139337" stop="140089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139637" g_stop="139789" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0090O01.2" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0090O01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139637" e_stop="139789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTTTCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAGAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>184</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="31" PGL_stop="850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31" e_stop="573"/>
            <exon e_start="759" e_stop="850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31" e_stop="573" e_length="543"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="574" i_stop="758" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="759" e_stop="850" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31" stop="506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38" stop="573"/>
              <exon start="759" stop="844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="314" stop="573"/>
              <exon start="759" stop="850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGAGCTGATTGCAGAGAAACCACATCAAAGGAAGTGAAATTGTCAAATGTTCATCTAAATATACTTAGCAAGCTTTCTGATTGGAAAGCAGATGGTAATGGCTCCATACCCTGTCCACCAAAGCAATATGGGGGCTGCAGTTCCTCGGTCTTATCATTGAAACGAATCTTCAAGATGAATTGGGTCGCGAAACTGGTGAAAAATGTTGAAGAAATGGTTAGTGGATGTAAAGTATGTGATTCTGGCGATCTAGAGAATATGTCTGAAGGGAAGTTGTTCCAAGCTGCTCATAGAGAAAATGGGGATGATAACATTTTGTACCATCCATTATCTGAAGATATTAGAAGTGAAGGGATCGAGGACTTCAGAAAGCAATGGAGTAGAGGTAAACCTGTTATCATCAAGGATATATATGATGTATCATCAATGTCAAACTGGGATCCCATTGAGATATGGAGAGGGGTAAGGGAGACAACAGAGGAGAAAACAAAAGATGATAACAGAACTGTGAAGGCCATTGATTGTTTTGATGGGAGTGAG : ATTGATATTCAGATTGGTCAATTTATCAGAGGATACTCAGAGGGAAGAATTCATGAGAATGGTTGGCCAGAAATGCTCAAATTGAAAGACTG</gDNA_template>
            <first_frame> E  R  A  D  C  R  E  T  T  S  K  E  V  K  L  S  N  V  H  L  N  I  L  S  K  L  S  D  W  K  A  D  G  N  G  S  I  P  C  P  P  K  Q  Y  G  G  C  S  S  S  V  L  S  L  K  R  I  F  K  M  N  W  V  A  K  L  V  K  N  V  E  E  M  V  S  G  C  K  V  C  D  S  G  D  L  E  N  M  S  E  G  K  L  F  Q  A  A  H  R  E  N  G  D  D  N  I  L  Y  H  P  L  S  E  D  I  R  S  E  G  I  E  D  F  R  K  Q  W  S  R  G  K  P  V  I  I  K  D  I  Y  D  V  S  S  M  S  N  W  D  P  I  E  I  W  R  G  V  R  E  T  T  E  E  K  T  K  D  D  N  R  T  V  K  A  I  D  C  F  D  G  S  E  :  I  D  I  Q  I  G  Q  F  I  R  G  Y  S  E  G  R  I  H  E  N  G  W  P  E  M  L  K  L  K  D   </first_frame>
            <second_frame>  K  E  L  I  A  E  K  P  H  Q  R  K  *  N  C  Q  M  F  I  *  I  Y  L  A  S  F  L  I  G  K  Q  M  V  M  A  P  Y  P  V  H  Q  S  N  M  G  A  A  V  P  R  S  Y  H  *  N  E  S  S  R  *  I  G  S  R  N  W  *  K  M  L  K  K  W  L  V  D  V  K  Y  V  I  L  A  I  *  R  I  C  L  K  G  S  C  S  K  L  L  I  E  K  M  G  M  I  T  F  C  T  I  H  Y  L  K  I  L  E  V  K  G  S  R  T  S  E  S  N  G  V  E  V  N  L  L  S  S  R  I  Y  M  M  Y  H  Q  C  Q  T  G  I  P  L  R  Y  G  E  G  *  G  R  Q  Q  R  R  K  Q  K  M  I  T  E  L  *  R  P  L  I  V  L  M  G  V  R :   L  I  F  R  L  V  N  L  S  E  D  T  Q  R  E  E  F  M  R  M  V  G  Q  K  C  S  N  *  K  T  </second_frame>
            <third_frame>   K  S  *  L  Q  R  N  H  I  K  G  S  E  I  V  K  C  S  S  K  Y  T  *  Q  A  F  *  L  E  S  R  W  *  W  L  H  T  L  S  T  K  A  I  W  G  L  Q  F  L  G  L  I  I  E  T  N  L  Q  D  E  L  G  R  E  T  G  E  K  C  *  R  N  G  *  W  M  *  S  M  *  F  W  R  S  R  E  Y  V  *  R  E  V  V  P  S  C  S  *  R  K  W  G  *  *  H  F  V  P  S  I  I  *  R  Y  *  K  *  R  D  R  G  L  Q  K  A  M  E  *  R  *  T  C  Y  H  Q  G  Y  I  *  C  I  I  N  V  K  L  G  S  H  *  D  M  E  R  G  K  G  D  N  R  G  E  N  K  R  *  *  Q  N  C  E  G  H  *  L  F  *  W  E  *   : D  *  Y  S  D  W  S  I  Y  Q  R  I  L  R  G  K  N  S  *  E  W  L  A  R  N  A  Q  I  E  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31" stop="573"/>
                    <exon start="759" stop="848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERADCRETTSKEVKLSNVHLNILSKLSDWKADGNGSIPCPPKQYGGCSSSVLSLKRIFKMNWVAKLVKNVEEMVSGCKVCDSGDLENMSEGKLFQAAHRENGDDNILYHPLSEDIRSEGIEDFRKQWSRGKPVIIKDIYDVSSMSNWDPIEIWRGVRETTEEKTKDDNRTVKAIDCFDGSEIDIQIGQFIRGYSEGRIHENGWPEMLKLKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="980" PGL_stop="5481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="980" e_stop="1088"/>
            <exon e_start="2136" e_stop="2564"/>
            <exon e_start="2659" e_stop="2731"/>
            <exon e_start="3102" e_stop="3187"/>
            <exon e_start="3798" e_stop="3917"/>
            <exon e_start="4000" e_stop="4070"/>
            <exon e_start="4493" e_stop="4985"/>
            <exon e_start="5165" e_stop="5178"/>
            <exon e_start="5475" e_stop="5481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.029" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.584" acc_prob="0.984" e_score="0.953"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.504" e_score="0.992"/>
          <exon-intron don_prob="0.521" acc_prob="0.961" e_score="0.643"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="980" e_stop="1088" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.948">
            <gDNA_intron_boundary i_start="1089" i_stop="2135" i_length="1047"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2136" e_stop="2564" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2565" i_stop="2658" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="2659" e_stop="2731" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.029" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2732" i_stop="3101" i_length="370"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="3102" e_stop="3187" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.584" acc_prob="0.984">
            <gDNA_intron_boundary i_start="3188" i_stop="3797" i_length="610"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3798" e_stop="3917" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4000" e_stop="4070" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4071" i_stop="4492" i_length="422"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="4493" e_stop="4985" e_length="493"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.504">
            <gDNA_intron_boundary i_start="4986" i_stop="5164" i_length="179"/>
          </intron>
          <exon e_serial="8" e_score="0.643">
            <gDNA_exon_boundary e_start="5165" e_stop="5178" e_length="14"/>
          </exon>
          <intron i_serial="8" don_prob="0.521" acc_prob="0.961">
            <gDNA_intron_boundary i_start="5179" i_stop="5474" i_length="296"/>
          </intron>
          <exon e_serial="9" e_score="0.429">
            <gDNA_exon_boundary e_start="5475" e_stop="5481" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="980" stop="1088"/>
              <exon start="2136" stop="2564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2243" stop="2564"/>
              <exon start="2659" stop="2731"/>
              <exon start="3102" stop="3187"/>
              <exon start="3798" stop="3917"/>
              <exon start="4000" stop="4070"/>
              <exon start="4493" stop="4615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3163" stop="3187"/>
              <exon start="3798" stop="3917"/>
              <exon start="4000" stop="4070"/>
              <exon start="4493" stop="4985"/>
              <exon start="5165" stop="5178"/>
              <exon start="5475" stop="5481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3163" stop="3187"/>
              <exon start="3798" stop="3917"/>
              <exon start="4000" stop="4070"/>
              <exon start="4493" stop="4985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3163" stop="3187"/>
              <exon start="3798" stop="3917"/>
              <exon start="4000" stop="4070"/>
              <exon start="4493" stop="4938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3164" stop="3187"/>
              <exon start="3798" stop="3917"/>
              <exon start="4000" stop="4070"/>
              <exon start="4493" stop="4897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCCTGCAGAATGATGTTGGTCCTAAGATCTTTCTTTCTTATGGGATGTATGAAGAACTTGGTAAAGGTGACTCAGTGAACAATCTGCATACCAACATGCGTGACCTA : GTATTCCTTTTGGTTCATATCAGTGAGGTCAAACTGAAAGGTTGGCAGAAGACGAAGATAGGAAAGATGCAGAAAATCTTTGCTGAATCTGATCACAAAGGAATTTCTGGCGATGCACTAAATGTTTCAAGCGAAGGGGATTTCTCCAAATTCTCGCCTGTTGGCGATAGAGGGGATGGTCAGTATGCTGATACGGATTCAAATGCCAATGAAATGTTGGTCGACCCAGAGAGCAGAGTTACTTCCCAGATTGGTGTAGATAACTTGAGTCATGAAGATCTGAATGGTTCCAGTCTAAACAGCTCCGACAGTAGTCATTCTGGAGCTCTTTGGGATGTCTTCCGGAGGCAGGATGTGCCGATGCTTATCGAGTATCTAAGATTTCATTGGAAGAAACACGGAGATTCAGACCATGTAACGGATGATTCT : GTGCCAAGTCCTCTTTACGATGGAATAGTATATCTGAATGAGCATCATAAGAGAAAGTTGAAAGAGTTATTTG : GAATTGAGCCTTGGTCGTTTGAACAGCATTTAGGCGAAGCTATTTTCGTTCCTGCTGGTTGTCCTTTCCAAGTGAGGAATCTTCAG : TCCACTGTCCAATTGGGCCTTGATTTTCTTTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG : GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAA : AGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTGCATCGGAGTACTTGATTTTGTTCTGCTAAATGCTAGAACGCTCTCAGGGGATGTGCATTGTTACCGCTTACTTTGGTCTCCCATAATCTCATAGGTTGTAGCCTGTGATATCTATCTATCTATTATCTTATGAAGAAATCAACAGCTGTGTGCTCCCATAGTCTTGTAGTAGAAGATATCAATAGGTCTTATTGTAATTGTAATTTCATAGGTGGAATGAAACATCAATTCAAGATATCATTTTTTGATAGATATTCAAGGTTAACAATCCTATGTAGCCTTCATATGATTATATAAAAAGCTTCTTTCTTTTA : GAGAAAGACAAAAG : GGCAAAG</gDNA_template>
            <first_frame> F  P  A  E  *  C  W  S  *  D  L  S  F  L  W  D  V  *  R  T  W  *  R  *  L  S  E  Q  S  A  Y  Q  H  A  *  P   : S  I  P  F  G  S  Y  Q  *  G  Q  T  E  R  L  A  E  D  E  D  R  K  D  A  E  N  L  C  *  I  *  S  Q  R  N  F  W  R  C  T  K  C  F  K  R  R  G  F  L  Q  I  L  A  C  W  R  *  R  G  W  S  V  C  *  Y  G  F  K  C  Q  *  N  V  G  R  P  R  E  Q  S  Y  F  P  D  W  C  R  *  L  E  S  *  R  S  E  W  F  Q  S  K  Q  L  R  Q  *  S  F  W  S  S  L  G  C  L  P  E  A  G  C  A  D  A  Y  R  V  S  K  I  S  L  E  E  T  R  R  F  R  P  C  N  G  *  F   : C  A  K  S  S  L  R  W  N  S  I  S  E  *  A  S  *  E  K  V  E  R  V  I  W :   N  *  A  L  V  V  *  T  A  F  R  R  S  Y  F  R  S  C  W  L  S  F  P  S  E  E  S  S   : V  H  C  P  I  G  P  *  F  S  F  S  R  K  L  R  *  G  C  *  N  G  *  R  N  P  W  P  S  *  Y  S  *  C  E  A  A  N  V  G   : G  G  K  D  I  T  L  C  S  K  L  S  H  Q  R  S  S  E  V  G  S  G  S  *  :  S  W  S  *  A  W  I  *  G  S  Q  F  D  R  I  G  V  R  E  F  G  E  N  D  E  E  T  S  G  T  L  N  I  N  Q  C  R  E  V  C  I  R  V  C  L  N  S  Y  V  Q  K  K  Q  Q  N  P  *  G  M  C  I  G  V  L  D  F  V  L  L  N  A  R  T  L  S  G  D  V  H  C  Y  R  L  L  W  S  P  I  I  S  *  V  V  A  C  D  I  Y  L  S  I  I  L  *  R  N  Q  Q  L  C  A  P  I  V  L  *  *  K  I  S  I  G  L  I  V  I  V  I  S  *  V  E  *  N  I  N  S  R  Y  H  F  L  I  D  I  Q  G  *  Q  S  Y  V  A  F  I  *  L  Y  K  K  L  L  S  F   : R  E  R  Q  K  :  G  K  </first_frame>
            <second_frame>  S  L  Q  N  D  V  G  P  K  I  F  L  S  Y  G  M  Y  E  E  L  G  K  G  D  S  V  N  N  L  H  T  N  M  R  D  L  :  V  F  L  L  V  H  I  S  E  V  K  L  K  G  W  Q  K  T  K  I  G  K  M  Q  K  I  F  A  E  S  D  H  K  G  I  S  G  D  A  L  N  V  S  S  E  G  D  F  S  K  F  S  P  V  G  D  R  G  D  G  Q  Y  A  D  T  D  S  N  A  N  E  M  L  V  D  P  E  S  R  V  T  S  Q  I  G  V  D  N  L  S  H  E  D  L  N  G  S  S  L  N  S  S  D  S  S  H  S  G  A  L  W  D  V  F  R  R  Q  D  V  P  M  L  I  E  Y  L  R  F  H  W  K  K  H  G  D  S  D  H  V  T  D  D  S  :  V  P  S  P  L  Y  D  G  I  V  Y  L  N  E  H  H  K  R  K  L  K  E  L  F   : G  I  E  P  W  S  F  E  Q  H  L  G  E  A  I  F  V  P  A  G  C  P  F  Q  V  R  N  L  Q  :  S  T  V  Q  L  G  L  D  F  L  S  P  E  S  L  G  E  A  V  R  M  A  E  E  I  R  G  L  P  N  T  H  D  A  K  L  Q  M  L  E  :  V  G  K  I  S  L  Y  A  A  S  S  A  I  K  E  V  Q  K  L  V  L  D  P  K :   V  G  P  E  L  G  F  E  D  P  N  L  T  A  L  V  S  E  N  L  E  K  M  M  K  R  R  Q  V  P  *  T  *  T  S  A  E  R  F  V  S  E  Y  V  *  I  H  M  Y  R  R  N  S  K  T  P  R  E  C  A  S  E  Y  L  I  L  F  C  *  M  L  E  R  S  Q  G  M  C  I  V  T  A  Y  F  G  L  P  *  S  H  R  L  *  P  V  I  S  I  Y  L  L  S  Y  E  E  I  N  S  C  V  L  P  *  S  C  S  R  R  Y  Q  *  V  L  L  *  L  *  F  H  R  W  N  E  T  S  I  Q  D  I  I  F  *  *  I  F  K  V  N  N  P  M  *  P  S  Y  D  Y  I  K  S  F  F  L  L  :  E  K  D  K  R :   A  K </second_frame>
            <third_frame>   P  C  R  M  M  L  V  L  R  S  F  F  L  M  G  C  M  K  N  L  V  K  V  T  Q  *  T  I  C  I  P  T  C  V  T  * :   Y  S  F  W  F  I  S  V  R  S  N  *  K  V  G  R  R  R  R  *  E  R  C  R  K  S  L  L  N  L  I  T  K  E  F  L  A  M  H  *  M  F  Q  A  K  G  I  S  P  N  S  R  L  L  A  I  E  G  M  V  S  M  L  I  R  I  Q  M  P  M  K  C  W  S  T  Q  R  A  E  L  L  P  R  L  V  *  I  T  *  V  M  K  I  *  M  V  P  V  *  T  A  P  T  V  V  I  L  E  L  F  G  M  S  S  G  G  R  M  C  R  C  L  S  S  I  *  D  F  I  G  R  N  T  E  I  Q  T  M  *  R  M  I  L :   C  Q  V  L  F  T  M  E  *  Y  I  *  M  S  I  I  R  E  S  *  K  S  Y  L  :  E  L  S  L  G  R  L  N  S  I  *  A  K  L  F  S  F  L  L  V  V  L  S  K  *  G  I  F  S :   P  L  S  N  W  A  L  I  F  F  L  Q  K  A  *  V  R  L  L  E  W  L  K  K  S  V  A  F  L  I  L  M  M  R  S  C  K  C  W  R :   W  E  R  Y  H  F  M  Q  Q  A  Q  P  S  K  K  F  R  S  W  F  W  I  L   : K  L  V  L  S  L  D  L  R  I  P  I  *  P  H  W  C  Q  R  I  W  R  K  *  *  R  D  V  R  Y  L  E  H  K  P  V  Q  R  G  L  Y  P  S  M  S  E  F  I  C  T  E  E  T  A  K  P  L  G  N  V  H  R  S  T  *  F  C  S  A  K  C  *  N  A  L  R  G  C  A  L  L  P  L  T  L  V  S  H  N  L  I  G  C  S  L  *  Y  L  S  I  Y  Y  L  M  K  K  S  T  A  V  C  S  H  S  L  V  V  E  D  I  N  R  S  Y  C  N  C  N  F  I  G  G  M  K  H  Q  F  K  I  S  F  F  D  R  Y  S  R  L  T  I  L  C  S  L  H  M  I  I  *  K  A  S  F  F  * :   R  K  T  K   : G  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="981" stop="1088"/>
                    <exon start="2136" stop="2564"/>
                    <exon start="2659" stop="2731"/>
                    <exon start="3102" stop="3187"/>
                    <exon start="3798" stop="3917"/>
                    <exon start="4000" stop="4070"/>
                    <exon start="4493" stop="4586"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLQNDVGPKIFLSYGMYEELGKGDSVNNLHTNMRDLVFLLVHISEVKLKGWQKTKIGKMQKIFAESDHKGISGDALNVSSEGDFSKFSPVGDRGDGQYADTDSNANEMLVDPESRVTSQIGVDNLSHEDLNGSSLNSSDSSHSGALWDVFRRQDVPMLIEYLRFHWKKHGDSDHVTDDSVPSPLYDGIVYLNEHHKRKLKELFGIEPWSFEQHLGEAIFVPAGCPFQVRNLQSTVQLGLDFLSPESLGEAVRMAEEIRGLPNTHDAKLQMLEVGKISLYAASSAIKEVQKLVLDPKVGPELGFEDPNLTALVSENLEKMMKRRQVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3827" e_stop="3917"/>
            <exon e_start="4000" e_stop="4383"/>
            <exon e_start="4434" e_stop="4671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.967"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.924"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="3827" e_stop="3917" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="3918" i_stop="3999" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="4000" e_stop="4383" e_length="384"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4384" i_stop="4433" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.903">
            <gDNA_exon_boundary e_start="4434" e_stop="4671" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3827" stop="3917"/>
              <exon start="4000" stop="4383"/>
              <exon start="4434" stop="4671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCCAGAAAGCTTAGGTGAGGCTGTTAGAATGGCTGAAGAAATCCGTGGCCTTCCTAATACTCATGATGCGAAGCTGCAAATGTTGGAG : GTGGGAAAGATATCACTTTATGCAGCAAGCTCAGCCATCAAAGAAGTTCAGAAGTTGGTTCTGGATCCTAAGTAAGCTGTTTTGCATGTTATTCTTTCTTTATGGCTTCTCTATACTTCCTTGTAAGATAGGATGTCTATGACATTTCTTATGTGGAGGTTCTAGGTTGAGGGGTAGAAAAACTATATTGACTTGTTGAATAAATCCTACTGCTGAGCTATGTATCTGTCAAAGTTGGGGCTGATCTCGACTACTTATACCATCTAGAGGCTTCTAAAGGCCTCTTTGGTTAATTTCAACAGGAATGTACAGTAAACTACAACCATTATAATCCTTCCATAAGTTGTTTCTCCGATTGTTATAGGGATGGATCCATTTGCTTTG : CACTCTCTTTCTGATGAATTCATTTACTATATCATTTCCTTGTGTTATTGTGTGTGCAGAGTTGGTCCTGAGCTTGGATTTGAGGATCCCAATTTGACCGCATTGGTGTCAGAGAATTTGGAGAAAATGATGAAGAGACGTCAGGTACCTTGAACATAAACCAGTGCAGAGAGGTTTGTATCCGAGTATGTCTGAATTCATATGTACAGAAGAAACAGCAAAACCCCTAGGGAATGTG</gDNA_template>
            <first_frame> F  S  R  K  L  R  *  G  C  *  N  G  *  R  N  P  W  P  S  *  Y  S  *  C  E  A  A  N  V  G   : G  G  K  D  I  T  L  C  S  K  L  S  H  Q  R  S  S  E  V  G  S  G  S  *  V  S  C  F  A  C  Y  S  F  F  M  A  S  L  Y  F  L  V  R  *  D  V  Y  D  I  S  Y  V  E  V  L  G  *  G  V  E  K  L  Y  *  L  V  E  *  I  L  L  L  S  Y  V  S  V  K  V  G  A  D  L  D  Y  L  Y  H  L  E  A  S  K  G  L  F  G  *  F  Q  Q  E  C  T  V  N  Y  N  H  Y  N  P  S  I  S  C  F  S  D  C  Y  R  D  G  S  I  C  F   : A  L  S  F  *  *  I  H  L  L  Y  H  F  L  V  L  L  C  V  Q  S  W  S  *  A  W  I  *  G  S  Q  F  D  R  I  G  V  R  E  F  G  E  N  D  E  E  T  S  G  T  L  N  I  N  Q  C  R  E  V  C  I  R  V  C  L  N  S  Y  V  Q  K  K  Q  Q  N  P  *  G  M   </first_frame>
            <second_frame>  S  P  E  S  L  G  E  A  V  R  M  A  E  E  I  R  G  L  P  N  T  H  D  A  K  L  Q  M  L  E  :  V  G  K  I  S  L  Y  A  A  S  S  A  I  K  E  V  Q  K  L  V  L  D  P  K  *  A  V  L  H  V  I  L  S  L  W  L  L  Y  T  S  L  *  D  R  M  S  M  T  F  L  M  W  R  F  *  V  E  G  *  K  N  Y  I  D  L  L  N  K  S  Y  C  *  A  M  Y  L  S  K  L  G  L  I  S  T  T  Y  T  I  *  R  L  L  K  A  S  L  V  N  F  N  R  N  V  Q  *  T  T  T  I  I  I  L  P  *  V  V  S  P  I  V  I  G  M  D  P  F  A  L  :  H  S  L  S  D  E  F  I  Y  Y  I  I  S  L  C  Y  C  V  C  R  V  G  P  E  L  G  F  E  D  P  N  L  T  A  L  V  S  E  N  L  E  K  M  M  K  R  R  Q  V  P  *  T  *  T  S  A  E  R  F  V  S  E  Y  V  *  I  H  M  Y  R  R  N  S  K  T  P  R  E  C  </second_frame>
            <third_frame>   L  Q  K  A  *  V  R  L  L  E  W  L  K  K  S  V  A  F  L  I  L  M  M  R  S  C  K  C  W  R :   W  E  R  Y  H  F  M  Q  Q  A  Q  P  S  K  K  F  R  S  W  F  W  I  L  S  K  L  F  C  M  L  F  F  L  Y  G  F  S  I  L  P  C  K  I  G  C  L  *  H  F  L  C  G  G  S  R  L  R  G  R  K  T  I  L  T  C  *  I  N  P  T  A  E  L  C  I  C  Q  S  W  G  *  S  R  L  L  I  P  S  R  G  F  *  R  P  L  W  L  I  S  T  G  M  Y  S  K  L  Q  P  L  *  S  F  H  K  L  F  L  R  L  L  *  G  W  I  H  L  L  C :   T  L  F  L  M  N  S  F  T  I  S  F  P  C  V  I  V  C  A  E  L  V  L  S  L  D  L  R  I  P  I  *  P  H  W  C  Q  R  I  W  R  K  *  *  R  D  V  R  Y  L  E  H  K  P  V  Q  R  G  L  Y  P  S  M  S  E  F  I  C  T  E  E  T  A  K  P  L  G  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3844" stop="3917"/>
                    <exon start="4000" stop="4141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRLLEWLKKSVAFLILMMRSCKCWRWERYHFMQQAQPSKKFRSWFWILSKLFCMLFFLYGFSILPCKIGCL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4342" stop="4383"/>
                    <exon start="4434" stop="4586"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVSPIVIGMDPFALHSLSDEFIYYIISLCYCVCRVGPELGFEDPNLTALVSENLEKMMKRRQVP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14274" PGL_stop="20806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14274" e_stop="14524"/>
            <exon e_start="15066" e_stop="15196"/>
            <exon e_start="15874" e_stop="15991"/>
            <exon e_start="19247" e_stop="19473"/>
            <exon e_start="19553" e_stop="19655"/>
            <exon e_start="20766" e_stop="20806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.426" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14274" e_stop="14524" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.948">
            <gDNA_intron_boundary i_start="14525" i_stop="15065" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15066" e_stop="15196" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15197" i_stop="15873" i_length="677"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15874" e_stop="15991" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.426">
            <gDNA_intron_boundary i_start="15992" i_stop="19246" i_length="3255"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19247" e_stop="19473" e_length="227"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.787">
            <gDNA_intron_boundary i_start="19474" i_stop="19552" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19553" e_stop="19655" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.915">
            <gDNA_intron_boundary i_start="19656" i_stop="20765" i_length="1110"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="20766" e_stop="20806" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14274" stop="14524"/>
              <exon start="15066" stop="15196"/>
              <exon start="15874" stop="15991"/>
              <exon start="19247" stop="19473"/>
              <exon start="19553" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14275" stop="14524"/>
              <exon start="15066" stop="15196"/>
              <exon start="15874" stop="15991"/>
              <exon start="19247" stop="19395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14289" stop="14524"/>
              <exon start="15066" stop="15196"/>
              <exon start="15874" stop="15991"/>
              <exon start="19247" stop="19473"/>
              <exon start="19553" stop="19655"/>
              <exon start="20766" stop="20806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14299" stop="14524"/>
              <exon start="15066" stop="15196"/>
              <exon start="15874" stop="15991"/>
              <exon start="19247" stop="19470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14327" stop="14524"/>
              <exon start="15066" stop="15196"/>
              <exon start="15874" stop="15991"/>
              <exon start="19247" stop="19473"/>
              <exon start="19553" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTCCCCTTTCCCTTTTTAGCTTTTTCACTTTTCTTCAACAAAATTTGATTCCTAACTTTCTCTGTAGATTTTGCACTCACTCTCCCTTCCTTTCTTCCCCTCTCTGTCATCCACAATCGGAAGTTTTTCTTCTCTCTGTTGACGACGGACGGTGACTTTTGTCGGTGCTTCTTATCTTATGCTTTGTTGTTTTCCGGCGAGTTATCCGATTTGCGGTGCAGAATGGCTAATCGTGGCTACAAATTGC : AGGAATTTGTGGCGCATTCGGGGAATGTAAACTGTTTAAGGTTTGGGAAGAAGACGCGTAGACAGTTTCTCACTGGTGGAGATGATCAGAATGTGAATCTTTGGTCCATTGGTAAACCAACATCCACCACG : AGCCTAAGTGGGCATACGAGTCCAATAGAATCTGTAGCTTTTGACTCAGCAGAGGTTCTAGTGCTTGCTGGAGCTTCATCAGGTGTAATAAAGCTATGGGATCTGGAAGAAACAAAAA : TGGTTCGCACTCTTACGGGACACAGATCATATTGCACTGCCTGTGAATTCCATCCTTTTGGTGAATTTTTTGCATCTGGATCTATGGATACTAATCTTAAGATATGGGATATAAGAAAAAAAGGATGCATCCACACATACAAAGGTCATACTCGAGGAATAAGTACCATACGATTCTCCCCTGATGGCCGCTGGGTGGTTTCTGGCGGATTTGACAATGTTGTGAAG : GTATGGGACCTAACAGCTGGAAAGCTCTTGCACGACTTTAAGTTCCATGAAGGGCACATTCGATCCATAGATTTCCATCCACTTGAGTTTCTTTTGGCAACAG : GTTCAGCTGACCGCACCGTGAACTTTTGGGATTTGGAAACA</gDNA_template>
            <first_frame> S  L  P  L  S  L  F  S  F  F  T  F  L  Q  Q  N  L  I  P  N  F  L  C  R  F  C  T  H  S  P  F  L  S  S  P  L  C  H  P  Q  S  E  V  F  L  L  S  V  D  D  G  R  *  L  L  S  V  L  L  I  L  C  F  V  V  F  R  R  V  I  R  F  A  V  Q  N  G  *  S  W  L  Q  I  A :   G  I  C  G  A  F  G  E  C  K  L  F  K  V  W  E  E  D  A  *  T  V  S  H  W  W  R  *  S  E  C  E  S  L  V  H  W  *  T  N  I  H  H   : E  P  K  W  A  Y  E  S  N  R  I  C  S  F  *  L  S  R  G  S  S  A  C  W  S  F  I  R  C  N  K  A  M  G  S  G  R  N  K  N :   G  S  H  S  Y  G  T  Q  I  I  L  H  C  L  *  I  P  S  F  W  *  I  F  C  I  W  I  Y  G  Y  *  S  *  D  M  G  Y  K  K  K  R  M  H  P  H  I  Q  R  S  Y  S  R  N  K  Y  H  T  I  L  P  *  W  P  L  G  G  F  W  R  I  *  Q  C  C  E   : G  M  G  P  N  S  W  K  A  L  A  R  L  *  V  P  *  R  A  H  S  I  H  R  F  P  S  T  *  V  S  F  G  N  R :   F  S  *  P  H  R  E  L  L  G  F  G  N  </first_frame>
            <second_frame>  L  F  P  F  P  F  L  A  F  S  L  F  F  N  K  I  *  F  L  T  F  S  V  D  F  A  L  T  L  P  S  F  L  P  L  S  V  I  H  N  R  K  F  F  F  S  L  L  T  T  D  G  D  F  C  R  C  F  L  S  Y  A  L  L  F  S  G  E  L  S  D  L  R  C  R  M  A  N  R  G  Y  K  L   : Q  E  F  V  A  H  S  G  N  V  N  C  L  R  F  G  K  K  T  R  R  Q  F  L  T  G  G  D  D  Q  N  V  N  L  W  S  I  G  K  P  T  S  T  T  :  S  L  S  G  H  T  S  P  I  E  S  V  A  F  D  S  A  E  V  L  V  L  A  G  A  S  S  G  V  I  K  L  W  D  L  E  E  T  K   : M  V  R  T  L  T  G  H  R  S  Y  C  T  A  C  E  F  H  P  F  G  E  F  F  A  S  G  S  M  D  T  N  L  K  I  W  D  I  R  K  K  G  C  I  H  T  Y  K  G  H  T  R  G  I  S  T  I  R  F  S  P  D  G  R  W  V  V  S  G  G  F  D  N  V  V  K  :  V  W  D  L  T  A  G  K  L  L  H  D  F  K  F  H  E  G  H  I  R  S  I  D  F  H  P  L  E  F  L  L  A  T   : G  S  A  D  R  T  V  N  F  W  D  L  E  T </second_frame>
            <third_frame>   S  S  P  F  P  F  *  L  F  H  F  S  S  T  K  F  D  S  *  L  S  L  *  I  L  H  S  L  S  L  P  F  F  P  S  L  S  S  T  I  G  S  F  S  S  L  C  *  R  R  T  V  T  F  V  G  A  S  Y  L  M  L  C  C  F  P  A  S  Y  P  I  C  G  A  E  W  L  I  V  A  T  N  C  :  R  N  L  W  R  I  R  G  M  *  T  V  *  G  L  G  R  R  R  V  D  S  F  S  L  V  E  M  I  R  M  *  I  F  G  P  L  V  N  Q  H  P  P  R :   A  *  V  G  I  R  V  Q  *  N  L  *  L  L  T  Q  Q  R  F  *  C  L  L  E  L  H  Q  V  *  *  S  Y  G  I  W  K  K  Q  K  :  W  F  A  L  L  R  D  T  D  H  I  A  L  P  V  N  S  I  L  L  V  N  F  L  H  L  D  L  W  I  L  I  L  R  Y  G  I  *  E  K  K  D  A  S  T  H  T  K  V  I  L  E  E  *  V  P  Y  D  S  P  L  M  A  A  G  W  F  L  A  D  L  T  M  L  *  R :   Y  G  T  *  Q  L  E  S  S  C  T  T  L  S  S  M  K  G  T  F  D  P  *  I  S  I  H  L  S  F  F  W  Q  Q  :  V  Q  L  T  A  P  *  T  F  G  I  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14326" stop="14524"/>
                    <exon start="15066" stop="15196"/>
                    <exon start="15874" stop="15991"/>
                    <exon start="19247" stop="19473"/>
                    <exon start="19553" stop="19655"/>
                    <exon start="20766" stop="20806"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLTFSVDFALTLPSFLPLSVIHNRKFFFSLLTTDGDFCRCFLSYALLFSGELSDLRCRMANRGYKLQEFVAHSGNVNCLRFGKKTRRQFLTGGDDQNVNLWSIGKPTSTTSLSGHTSPIESVAFDSAEVLVLAGASSGVIKLWDLEETKMVRTLTGHRSYCTACEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHTRGISTIRFSPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKFHEGHIRSIDFHPLEFLLATGSADRTVNFWDLET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21903" PGL_stop="24698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21903" e_stop="22050"/>
            <exon e_start="22173" e_stop="22350"/>
            <exon e_start="22809" e_stop="23324"/>
            <exon e_start="23856" e_stop="23912"/>
            <exon e_start="24019" e_stop="24698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.117" acc_prob="0.996" e_score="0.973"/>
          <exon-intron don_prob="0.775" acc_prob="0.992" e_score="0.978"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="0.953"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="21903" e_stop="22050" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.117" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22051" i_stop="22172" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="22173" e_stop="22350" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.775" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22351" i_stop="22808" i_length="458"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="22809" e_stop="23324" e_length="516"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23325" i_stop="23855" i_length="531"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23856" e_stop="23912" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23913" i_stop="24018" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24019" e_stop="24698" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21903" stop="22050"/>
              <exon start="22173" stop="22350"/>
              <exon start="22809" stop="23214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21903" stop="22050"/>
              <exon start="22173" stop="22350"/>
              <exon start="22809" stop="23190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23195" stop="23324"/>
              <exon start="23856" stop="23912"/>
              <exon start="24019" stop="24535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24135" stop="24698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTTTATTCATGGGAGCCTGTAAATTGTCATGACTCTGTTGAAATGGGATGGTCGACTTTAAGCGATCTCTGCATACATGATGGGAAGCTTGTAGGTGGTGCTTATTACCAAAACTATGTTGGAGTTTGGGTTGCAGATATTTCG : CTTATTGATCCCCATGGAGCTGGTTCAACTCCAGATAGACAAAGTAACTTGGAGCAGAAACAGGACCATGTGGAGAGTCGTTTAGAAAGAATAGGAAGCAACAGAAGTTCTAATTCAAATCTTCGCTGCACATCACCTGATATTGATTCCAAGGAAATAAAGAATATATATGTGGACT : GTGAAAATCCTGTAACCATTAAGAAAGTTACTTCTCCTTCTCCAAAAGTGGTTCCTCCTTTAAATTCTAAGGAAAACAAGAATCAGTTGAGTCAGAAGCTTAATTCTGTTGTAGGTTTACCTGCAAAAATTAATGGATTGCCAGTAGGTAAATCATTTGTCGTCCCCAGTGTGGTACCTCGTGATATTCCAGAGGAGAAGAAATTGGATACTTGTAGAAGGGAATCTGTTTCTGCAACCAGTGCAAGTAGTGGTATACCACAAAAGCCGTCTCACATAAAGTGCCCATCCAGCAACAACTTTGATATGGAGAAGATCTCTGTGGCTCTTCAGTCTGAAATTGCAGACAACTTGCTGCATACAGTAGATAGTAAGAAGGAATCAGATATTAATAGCAGGCTTATGGCAGATAATGATTCCAGAGAACGTTCCGAGGCAAAAGATTCTGCTGGCAAGCATGGTGGAGAAAAGCTAGAGAAAACTTCATTGCAACCACCGCTGAATAGTCGGGAGAACC : GTAATGTGGGTTCAGAAGGTAGGAAAGAGTTGCATCCAGTTAGATTTGTGAATGGAG : TGGCGGTAGTGCGAGGAAGGACGCGCAGTTTGGTTGAGAGGTTTGAGAAAAGAGAAGGGTTGAACATAGATGATGTCCATAAGCTGGATGTGGTGTCTCATTCTAAAACTGAGGAAACAGATGTATCCCCTTTGCCACCTTCTTGTTGTAAAGATGAGGAACTAGAAACCTTTTCCACAAAATTTGAAGAAGAACCAGAAACATCACCTTTGACAGCTTCTCGTTTTAAAACAGAGGAAGCAATGCGCCCCATGCCTCTAGCTCATTCGAAAGTTGAGGAAACAAATTCATCTGCTTTGCCAGCTTCTCAATATGAAGTTGAGGACTTAGAAGCATCCCATAAGCCAGCTTCTAAATCTAAATCTGAGGAAGTAAGAAAAAACCATTTACCAGCTTCTCATTCTGAAGCTGAGAAATTAGAGGCATCCCTTATGCTAGCTTCTCAGTTTAAATACGAGGAAGTTAGAGAATCCCATTTACCAGCTTCTTGTTCTAAAGCTGAGGAATTTGAAGCATCCCCTATCCTAGCTTCACAGGTTAAATCTGAGGATGTAAGGAAGTCTCGTTTGCCAACTTCTCGTTCTAGAACTGGGGAATTAGGAGCATCCTCTATACCAGCTTCACAGCTTAAACCTGAGAATGTAAGAAGATCCCGTTTATCAGCTTCTCGTTCTAAAGCT</gDNA_template>
            <first_frame> E  G  L  F  M  G  A  C  K  L  S  *  L  C  *  N  G  M  V  D  F  K  R  S  L  H  T  *  W  E  A  C  R  W  C  L  L  P  K  L  C  W  S  L  G  C  R  Y  F   : A  Y  *  S  P  W  S  W  F  N  S  R  *  T  K  *  L  G  A  E  T  G  P  C  G  E  S  F  R  K  N  R  K  Q  Q  K  F  *  F  K  S  S  L  H  I  T  *  Y  *  F  Q  G  N  K  E  Y  I  C  G  L :   *  K  S  C  N  H  *  E  S  Y  F  S  F  S  K  S  G  S  S  F  K  F  *  G  K  Q  E  S  V  E  S  E  A  *  F  C  C  R  F  T  C  K  N  *  W  I  A  S  R  *  I  I  C  R  P  Q  C  G  T  S  *  Y  S  R  G  E  E  I  G  Y  L  *  K  G  I  C  F  C  N  Q  C  K  *  W  Y  T  T  K  A  V  S  H  K  V  P  I  Q  Q  Q  L  *  Y  G  E  D  L  C  G  S  S  V  *  N  C  R  Q  L  A  A  Y  S  R  *  *  E  G  I  R  Y  *  *  Q  A  Y  G  R  *  *  F  Q  R  T  F  R  G  K  R  F  C  W  Q  A  W  W  R  K  A  R  E  N  F  I  A  T  T  A  E  *  S  G  E  P :   *  C  G  F  R  R  *  E  R  V  A  S  S  *  I  C  E  W  S :   G  G  S  A  R  K  D  A  Q  F  G  *  E  V  *  E  K  R  R  V  E  H  R  *  C  P  *  A  G  C  G  V  S  F  *  N  *  G  N  R  C  I  P  F  A  T  F  L  L  *  R  *  G  T  R  N  L  F  H  K  I  *  R  R  T  R  N  I  T  F  D  S  F  S  F  *  N  R  G  S  N  A  P  H  A  S  S  S  F  E  S  *  G  N  K  F  I  C  F  A  S  F  S  I  *  S  *  G  L  R  S  I  P  *  A  S  F  *  I  *  I  *  G  S  K  K  K  P  F  T  S  F  S  F  *  S  *  E  I  R  G  I  P  Y  A  S  F  S  V  *  I  R  G  S  *  R  I  P  F  T  S  F  L  F  *  S  *  G  I  *  S  I  P  Y  P  S  F  T  G  *  I  *  G  C  K  E  V  S  F  A  N  F  S  F  *  N  W  G  I  R  S  I  L  Y  T  S  F  T  A  *  T  *  E  C  K  K  I  P  F  I  S  F  S  F  *  S  </first_frame>
            <second_frame>  K  V  Y  S  W  E  P  V  N  C  H  D  S  V  E  M  G  W  S  T  L  S  D  L  C  I  H  D  G  K  L  V  G  G  A  Y  Y  Q  N  Y  V  G  V  W  V  A  D  I  S  :  L  I  D  P  H  G  A  G  S  T  P  D  R  Q  S  N  L  E  Q  K  Q  D  H  V  E  S  R  L  E  R  I  G  S  N  R  S  S  N  S  N  L  R  C  T  S  P  D  I  D  S  K  E  I  K  N  I  Y  V  D   : C  E  N  P  V  T  I  K  K  V  T  S  P  S  P  K  V  V  P  P  L  N  S  K  E  N  K  N  Q  L  S  Q  K  L  N  S  V  V  G  L  P  A  K  I  N  G  L  P  V  G  K  S  F  V  V  P  S  V  V  P  R  D  I  P  E  E  K  K  L  D  T  C  R  R  E  S  V  S  A  T  S  A  S  S  G  I  P  Q  K  P  S  H  I  K  C  P  S  S  N  N  F  D  M  E  K  I  S  V  A  L  Q  S  E  I  A  D  N  L  L  H  T  V  D  S  K  K  E  S  D  I  N  S  R  L  M  A  D  N  D  S  R  E  R  S  E  A  K  D  S  A  G  K  H  G  G  E  K  L  E  K  T  S  L  Q  P  P  L  N  S  R  E  N   : R  N  V  G  S  E  G  R  K  E  L  H  P  V  R  F  V  N  G   : V  A  V  V  R  G  R  T  R  S  L  V  E  R  F  E  K  R  E  G  L  N  I  D  D  V  H  K  L  D  V  V  S  H  S  K  T  E  E  T  D  V  S  P  L  P  P  S  C  C  K  D  E  E  L  E  T  F  S  T  K  F  E  E  E  P  E  T  S  P  L  T  A  S  R  F  K  T  E  E  A  M  R  P  M  P  L  A  H  S  K  V  E  E  T  N  S  S  A  L  P  A  S  Q  Y  E  V  E  D  L  E  A  S  H  K  P  A  S  K  S  K  S  E  E  V  R  K  N  H  L  P  A  S  H  S  E  A  E  K  L  E  A  S  L  M  L  A  S  Q  F  K  Y  E  E  V  R  E  S  H  L  P  A  S  C  S  K  A  E  E  F  E  A  S  P  I  L  A  S  Q  V  K  S  E  D  V  R  K  S  R  L  P  T  S  R  S  R  T  G  E  L  G  A  S  S  I  P  A  S  Q  L  K  P  E  N  V  R  R  S  R  L  S  A  S  R  S  K  A </second_frame>
            <third_frame>   R  F  I  H  G  S  L  *  I  V  M  T  L  L  K  W  D  G  R  L  *  A  I  S  A  Y  M  M  G  S  L  *  V  V  L  I  T  K  T  M  L  E  F  G  L  Q  I  F  R :   L  L  I  P  M  E  L  V  Q  L  Q  I  D  K  V  T  W  S  R  N  R  T  M  W  R  V  V  *  K  E  *  E  A  T  E  V  L  I  Q  I  F  A  A  H  H  L  I  L  I  P  R  K  *  R  I  Y  M  W  T  :  V  K  I  L  *  P  L  R  K  L  L  L  L  L  Q  K  W  F  L  L  *  I  L  R  K  T  R  I  S  *  V  R  S  L  I  L  L  *  V  Y  L  Q  K  L  M  D  C  Q  *  V  N  H  L  S  S  P  V  W  Y  L  V  I  F  Q  R  R  R  N  W  I  L  V  E  G  N  L  F  L  Q  P  V  Q  V  V  V  Y  H  K  S  R  L  T  *  S  A  H  P  A  T  T  L  I  W  R  R  S  L  W  L  F  S  L  K  L  Q  T  T  C  C  I  Q  *  I  V  R  R  N  Q  I  L  I  A  G  L  W  Q  I  M  I  P  E  N  V  P  R  Q  K  I  L  L  A  S  M  V  E  K  S  *  R  K  L  H  C  N  H  R  *  I  V  G  R  T  :  V  M  W  V  Q  K  V  G  K  S  C  I  Q  L  D  L  *  M  E  :  W  R  *  C  E  E  G  R  A  V  W  L  R  G  L  R  K  E  K  G  *  T  *  M  M  S  I  S  W  M  W  C  L  I  L  K  L  R  K  Q  M  Y  P  L  C  H  L  L  V  V  K  M  R  N  *  K  P  F  P  Q  N  L  K  K  N  Q  K  H  H  L  *  Q  L  L  V  L  K  Q  R  K  Q  C  A  P  C  L  *  L  I  R  K  L  R  K  Q  I  H  L  L  C  Q  L  L  N  M  K  L  R  T  *  K  H  P  I  S  Q  L  L  N  L  N  L  R  K  *  E  K  T  I  Y  Q  L  L  I  L  K  L  R  N  *  R  H  P  L  C  *  L  L  S  L  N  T  R  K  L  E  N  P  I  Y  Q  L  L  V  L  K  L  R  N  L  K  H  P  L  S  *  L  H  R  L  N  L  R  M  *  G  S  L  V  C  Q  L  L  V  L  E  L  G  N  *  E  H  P  L  Y  Q  L  H  S  L  N  L  R  M  *  E  D  P  V  Y  Q  L  L  V  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21904" stop="22050"/>
                    <exon start="22173" stop="22350"/>
                    <exon start="22809" stop="23324"/>
                    <exon start="23856" stop="23912"/>
                    <exon start="24019" stop="24698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVYSWEPVNCHDSVEMGWSTLSDLCIHDGKLVGGAYYQNYVGVWVADISLIDPHGAGSTPDRQSNLEQKQDHVESRLERIGSNRSSNSNLRCTSPDIDSKEIKNIYVDCENPVTIKKVTSPSPKVVPPLNSKENKNQLSQKLNSVVGLPAKINGLPVGKSFVVPSVVPRDIPEEKKLDTCRRESVSATSASSGIPQKPSHIKCPSSNNFDMEKISVALQSEIADNLLHTVDSKKESDINSRLMADNDSRERSEAKDSAGKHGGEKLEKTSLQPPLNSRENRNVGSEGRKELHPVRFVNGVAVVRGRTRSLVERFEKREGLNIDDVHKLDVVSHSKTEETDVSPLPPSCCKDEELETFSTKFEEEPETSPLTASRFKTEEAMRPMPLAHSKVEETNSSALPASQYEVEDLEASHKPASKSKSEEVRKNHLPASHSEAEKLEASLMLASQFKYEEVRESHLPASCSKAEEFEASPILASQVKSEDVRKSRLPTSRSRTGELGASSIPASQLKPENVRRSRLSASRSKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="24724" PGL_stop="29507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24724" e_stop="24902"/>
            <exon e_start="25414" e_stop="25539"/>
            <exon e_start="25794" e_stop="25868"/>
            <exon e_start="25963" e_stop="26075"/>
            <exon e_start="26642" e_stop="26758"/>
            <exon e_start="26864" e_stop="26932"/>
            <exon e_start="27576" e_stop="28112"/>
            <exon e_start="29463" e_stop="29507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.897" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.970" e_score="0.998"/>
          <exon-only e_score="0.489"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24724" e_stop="24902" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24903" i_stop="25413" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25414" e_stop="25539" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.972">
            <gDNA_intron_boundary i_start="25540" i_stop="25793" i_length="254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25794" e_stop="25868" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25869" i_stop="25962" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25963" e_stop="26075" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26076" i_stop="26641" i_length="566"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="26642" e_stop="26758" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.897">
            <gDNA_intron_boundary i_start="26759" i_stop="26863" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26864" e_stop="26932" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26933" i_stop="27575" i_length="643"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="27576" e_stop="28112" e_length="537"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="28113" i_stop="29462" i_length="1350"/>
          </intron>
          <exon e_serial="8" e_score="0.489">
            <gDNA_exon_boundary e_start="29463" e_stop="29507" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24724" stop="24902"/>
              <exon start="25414" stop="25539"/>
              <exon start="25794" stop="25868"/>
              <exon start="25963" stop="26075"/>
              <exon start="26642" stop="26758"/>
              <exon start="26864" stop="26932"/>
              <exon start="27576" stop="27605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24725" stop="24902"/>
              <exon start="25414" stop="25539"/>
              <exon start="25794" stop="25868"/>
              <exon start="25963" stop="26075"/>
              <exon start="26642" stop="26705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25971" stop="26075"/>
              <exon start="26642" stop="26758"/>
              <exon start="26864" stop="26932"/>
              <exon start="27576" stop="27801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26716" stop="26758"/>
              <exon start="26864" stop="26932"/>
              <exon start="27576" stop="28112"/>
              <exon start="29463" stop="29507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTCTAAGTTTAGAAGTGGAACAAGAACATCCCGTTTGTCGGCTTTTCGTTCAAAAGCTGAGGAAGCTAAAACATCACGATTATTAGCTTCTCGTTCTAAAGCTGAGGAGGCACAAACATTGCGCCTGTTGTCTTCTGGTTCTAATGCTGAGCAACCACAAATAGCTCCTTTGCCG : GATGCTAATCAGCAGATCATTGCACGGTGTGAGCCAGTGCAGAATGATGATATCATTATTGAAGATCTTATGCAACGCCATGATGTGCTGCTAAATTCGTTTAGATCTCGTTTGACAAAGCTGCAG : GTAGTTCGTCACTACTGGGAACGGAATGACATCAGGGGTGCTTTTGAGGCCTTGAGGAAGTTGTCAGATTATTCT : GTGCAAGCTGATGTTGTGAGTGTCCTCGTAGATAAAATGGAGATTATCACTTTGGATTTGTTTTCCTTCTTGTTGCCTGTACTGTTAGCCTTACTTGAAACTAAGATAGAAAG : GCATGCAAATGTTTCCCTGGAGCTGTTGTTGAAACTTGTTGCAGTCTTTGGACCAGTAGTTCGCTCAGCCGCTTCAGCACGTCCATCTGTTGGGGTTGATCTTCATGCAGAAGCAAG : AATTAAGTGCTGCAGGCAGTGCTTTGCCTACCTCCAAGATATACAGAAAACACTTCCTGAACTTATAAG : GGGAGGGGGTCAGCCGGCAAAAGGTGCAGTACAATTAAATCTCCTACTTCAAGAATCATAGTCCAGTTTATGATATATGCTTTTCCTAATGGCTAAAGCGAGACAACGGAATGGGAAGTTAGCTACTATACAATGTTCTCAAACTTATGTCTCTTTATGGACACCCACAATTTTGCTCCTCGGGTTTCCGTCCTTGCTACCATTTTCACCAACCTTGTAACAGCGGAAAATTGGCAAGATGGAAATGCAGTGTCTGTCCTCCGCCACTGCAACTGGGTTGGGAGGCAAAGGTAAAAACTCTCGACATAATATATCCTTTTGTTGGAGAGTAGCATCGCTATCTTCATTCAGATACGCGGCTTGAACATATTCAAAGTTCCTGGCTGTATGTGTCCATCCATATGTAAGTTGTGTACATGTATCTGCAATAGTAAAAAAAAATTGGATGAGATGTGTACATCATTTGATCAATGAAACAGAGATTCATACACACACCTTCTCTTGCTATCAAAACTCAATATTGAACTTTCTTCTCAA : TGAAAAAGAGAGAAAGCCAAAAGAAAACTGAGCAGGGAAAGATCG</gDNA_template>
            <first_frame> L  F  L  S  L  E  V  E  Q  E  H  P  V  C  R  L  F  V  Q  K  L  R  K  L  K  H  H  D  Y  *  L  L  V  L  K  L  R  R  H  K  H  C  A  C  C  L  L  V  L  M  L  S  N  H  K  *  L  L  C  R :   M  L  I  S  R  S  L  H  G  V  S  Q  C  R  M  M  I  S  L  L  K  I  L  C  N  A  M  M  C  C  *  I  R  L  D  L  V  *  Q  S  C  R :   *  F  V  T  T  G  N  G  M  T  S  G  V  L  L  R  P  *  G  S  C  Q  I  I  L :   C  K  L  M  L  *  V  S  S  *  I  K  W  R  L  S  L  W  I  C  F  P  S  C  C  L  Y  C  *  P  Y  L  K  L  R  *  K   : G  M  Q  M  F  P  W  S  C  C  *  N  L  L  Q  S  L  D  Q  *  F  A  Q  P  L  Q  H  V  H  L  L  G  L  I  F  M  Q  K  Q   : E  L  S  A  A  G  S  A  L  P  T  S  K  I  Y  R  K  H  F  L  N  L  *   : G  E  G  V  S  R  Q  K  V  Q  Y  N  *  I  S  Y  F  K  N  H  S  P  V  Y  D  I  C  F  S  *  W  L  K  R  D  N  G  M  G  S  *  L  L  Y  N  V  L  K  L  M  S  L  Y  G  H  P  Q  F  C  S  S  G  F  R  P  C  Y  H  F  H  Q  P  C  N  S  G  K  L  A  R  W  K  C  S  V  C  P  P  P  L  Q  L  G  W  E  A  K  V  K  T  L  D  I  I  Y  P  F  V  G  E  *  H  R  Y  L  H  S  D  T  R  L  E  H  I  Q  S  S  W  L  Y  V  S  I  H  M  *  V  V  Y  M  Y  L  Q  *  *  K  K  I  G  *  D  V  Y  I  I  *  S  M  K  Q  R  F  I  H  T  P  S  L  A  I  K  T  Q  Y  *  T  F  F  S   : M  K  K  R  E  S  Q  K  K  T  E  Q  G  K  I  </first_frame>
            <second_frame>  C  F  *  V  *  K  W  N  K  N  I  P  F  V  G  F  S  F  K  S  *  G  S  *  N  I  T  I  I  S  F  S  F  *  S  *  G  G  T  N  I  A  P  V  V  F  W  F  *  C  *  A  T  T  N  S  S  F  A   : G  C  *  S  A  D  H  C  T  V  *  A  S  A  E  *  *  Y  H  Y  *  R  S  Y  A  T  P  *  C  A  A  K  F  V  *  I  S  F  D  K  A  A   : G  S  S  S  L  L  G  T  E  *  H  Q  G  C  F  *  G  L  E  E  V  V  R  L  F   : C  A  S  *  C  C  E  C  P  R  R  *  N  G  D  Y  H  F  G  F  V  F  L  L  V  A  C  T  V  S  L  T  *  N  *  D  R  K  :  A  C  K  C  F  P  G  A  V  V  E  T  C  C  S  L  W  T  S  S  S  L  S  R  F  S  T  S  I  C  W  G  *  S  S  C  R  S  K  :  N  *  V  L  Q  A  V  L  C  L  P  P  R  Y  T  E  N  T  S  *  T  Y  K  :  G  R  G  S  A  G  K  R  C  S  T  I  K  S  P  T  S  R  I  I  V  Q  F  M  I  Y  A  F  P  N  G  *  S  E  T  T  E  W  E  V  S  Y  Y  T  M  F  S  N  L  C  L  F  M  D  T  H  N  F  A  P  R  V  S  V  L  A  T  I  F  T  N  L  V  T  A  E  N  W  Q  D  G  N  A  V  S  V  L  R  H  C  N  W  V  G  R  Q  R  *  K  L  S  T  *  Y  I  L  L  L  E  S  S  I  A  I  F  I  Q  I  R  G  L  N  I  F  K  V  P  G  C  M  C  P  S  I  C  K  L  C  T  C  I  C  N  S  K  K  K  L  D  E  M  C  T  S  F  D  Q  *  N  R  D  S  Y  T  H  L  L  L  L  S  K  L  N  I  E  L  S  S  Q  :  *  K  R  E  K  A  K  R  K  L  S  R  E  R  S </second_frame>
            <third_frame>   V  S  K  F  R  S  G  T  R  T  S  R  L  S  A  F  R  S  K  A  E  E  A  K  T  S  R  L  L  A  S  R  S  K  A  E  E  A  Q  T  L  R  L  L  S  S  G  S  N  A  E  Q  P  Q  I  A  P  L  P  :  D  A  N  Q  Q  I  I  A  R  C  E  P  V  Q  N  D  D  I  I  I  E  D  L  M  Q  R  H  D  V  L  L  N  S  F  R  S  R  L  T  K  L  Q  :  V  V  R  H  Y  W  E  R  N  D  I  R  G  A  F  E  A  L  R  K  L  S  D  Y  S  :  V  Q  A  D  V  V  S  V  L  V  D  K  M  E  I  I  T  L  D  L  F  S  F  L  L  P  V  L  L  A  L  L  E  T  K  I  E  R :   H  A  N  V  S  L  E  L  L  L  K  L  V  A  V  F  G  P  V  V  R  S  A  A  S  A  R  P  S  V  G  V  D  L  H  A  E  A  R :   I  K  C  C  R  Q  C  F  A  Y  L  Q  D  I  Q  K  T  L  P  E  L  I  R :   G  G  G  Q  P  A  K  G  A  V  Q  L  N  L  L  L  Q  E  S  *  S  S  L  *  Y  M  L  F  L  M  A  K  A  R  Q  R  N  G  K  L  A  T  I  Q  C  S  Q  T  Y  V  S  L  W  T  P  T  I  L  L  L  G  F  P  S  L  L  P  F  S  P  T  L  *  Q  R  K  I  G  K  M  E  M  Q  C  L  S  S  A  T  A  T  G  L  G  G  K  G  K  N  S  R  H  N  I  S  F  C  W  R  V  A  S  L  S  S  F  R  Y  A  A  *  T  Y  S  K  F  L  A  V  C  V  H  P  Y  V  S  C  V  H  V  S  A  I  V  K  K  N  W  M  R  C  V  H  H  L  I  N  E  T  E  I  H  T  H  T  F  S  C  Y  Q  N  S  I  L  N  F  L  L  N :   E  K  E  R  K  P  K  E  N  *  A  G  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24726" stop="24902"/>
                    <exon start="25414" stop="25539"/>
                    <exon start="25794" stop="25868"/>
                    <exon start="25963" stop="26075"/>
                    <exon start="26642" stop="26758"/>
                    <exon start="26864" stop="26932"/>
                    <exon start="27576" stop="27636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSKFRSGTRTSRLSAFRSKAEEAKTSRLLASRSKAEEAQTLRLLSSGSNAEQPQIAPLPDANQQIIARCEPVQNDDIIIEDLMQRHDVLLNSFRSRLTKLQVVRHYWERNDIRGAFEALRKLSDYSVQADVVSVLVDKMEIITLDLFSFLLPVLLALLETKIERHANVSLELLLKLVAVFGPVVRSAASARPSVGVDLHAEARIKCCRQCFAYLQDIQKTLPELIRGGGQPAKGAVQLNLLLQES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27698" stop="27907"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLYNVLKLMSLYGHPQFCSSGFRPCYHFHQPCNSGKLARWKCSVCPPPLQLGWEAKVKTLDIIYPFVGE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27940" stop="28112"/>
                    <exon start="29463" stop="29493"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYSKFLAVCVHPYVSCVHVSAIVKKNWMRCVHHLINETEIHTHTFSCYQNSILNFLLNEKERKPKEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28075" PGL_stop="27564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28075" e_stop="27564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="28075" e_stop="27564" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28075" stop="27564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGGTGTGTGTATGAATCTCTGTTTCATTGATCAAATGATGTACACATCTCATCCAATTTTTTTTTACTATTGCAGATACATGTACACAACTTACATATGGATGGACACATACAGCCAGGAACTTTGAATATGTTCAAGCCGCGTATCTGAATGAAGATAGCGATGCTACTCTCCAACAAAAGGATATATTATGTCGAGAGTTTTTACCTTTGCCTCCCAACCCAGTTGCAGTGGCGGAGGACAGACACTGCATTTCCATCTTGCCAATTTTCCGCTGTTACAAGGTTGGTGAAAATGGTAGCAAGGACGGAAACCCGAGGAGCAAAATTGTGGGTGTCCATAAAGAGACATAAGTTTGAGAACATTGTATAGTAGCTAACTTCCCATTCCGTTGTCTCGCTTTAGCCATTAGGAAAAGCATATATCATAAACTGGACTATGATTCTTGAAGTAGGAGATTTAATTGTACTGCACCTTTTGCCGGCTGACCCCCTCCCCTACAACAGAGC</gDNA_template>
            <first_frame> R  R  C  V  Y  E  S  L  F  H  *  S  N  D  V  H  I  S  S  N  F  F  L  L  L  Q  I  H  V  H  N  L  H  M  D  G  H  I  Q  P  G  T  L  N  M  F  K  P  R  I  *  M  K  I  A  M  L  L  S  N  K  R  I  Y  Y  V  E  S  F  Y  L  C  L  P  T  Q  L  Q  W  R  R  T  D  T  A  F  P  S  C  Q  F  S  A  V  T  R  L  V  K  M  V  A  R  T  E  T  R  G  A  K  L  W  V  S  I  K  R  H  K  F  E  N  I  V  *  *  L  T  S  H  S  V  V  S  L  *  P  L  G  K  A  Y  I  I  N  W  T  M  I  L  E  V  G  D  L  I  V  L  H  L  L  P  A  D  P  L  P  Y  N  R   </first_frame>
            <second_frame>  E  G  V  C  M  N  L  C  F  I  D  Q  M  M  Y  T  S  H  P  I  F  F  Y  Y  C  R  Y  M  Y  T  T  Y  I  W  M  D  T  Y  S  Q  E  L  *  I  C  S  S  R  V  S  E  *  R  *  R  C  Y  S  P  T  K  G  Y  I  M  S  R  V  F  T  F  A  S  Q  P  S  C  S  G  G  G  Q  T  L  H  F  H  L  A  N  F  P  L  L  Q  G  W  *  K  W  *  Q  G  R  K  P  E  E  Q  N  C  G  C  P  *  R  D  I  S  L  R  T  L  Y  S  S  *  L  P  I  P  L  S  R  F  S  H  *  E  K  H  I  S  *  T  G  L  *  F  L  K  *  E  I  *  L  Y  C  T  F  C  R  L  T  P  S  P  T  T  E  </second_frame>
            <third_frame>   K  V  C  V  *  I  S  V  S  L  I  K  *  C  T  H  L  I  Q  F  F  F  T  I  A  D  T  C  T  Q  L  T  Y  G  W  T  H  T  A  R  N  F  E  Y  V  Q  A  A  Y  L  N  E  D  S  D  A  T  L  Q  Q  K  D  I  L  C  R  E  F  L  P  L  P  P  N  P  V  A  V  A  E  D  R  H  C  I  S  I  L  P  I  F  R  C  Y  K  V  G  E  N  G  S  K  D  G  N  P  R  S  K  I  V  G  V  H  K  E  T  *  V  *  E  H  C  I  V  A  N  F  P  F  R  C  L  A  L  A  I  R  K  S  I  Y  H  K  L  D  Y  D  S  *  S  R  R  F  N  C  T  A  P  F  A  G  *  P  P  P  L  Q  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28034" stop="27720"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTHLIQFFFTIADTCTQLTYGWTHTARNFEYVQAAYLNEDSDATLQQKDILCREFLPLPPNPVAVAEDRHCISILPIFRCYKVGENGSKDGNPRSKIVGVHKET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="34276" PGL_stop="35189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34276" e_stop="34293"/>
            <exon e_start="34554" e_stop="34631"/>
            <exon e_start="34858" e_stop="35189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.960" e_score="0.962"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34276" e_stop="34293" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.914">
            <gDNA_intron_boundary i_start="34294" i_stop="34553" i_length="260"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="34554" e_stop="34631" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.960">
            <gDNA_intron_boundary i_start="34632" i_stop="34857" i_length="226"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="34858" e_stop="35189" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34276" stop="34293"/>
              <exon start="34554" stop="34631"/>
              <exon start="34858" stop="35189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGCTACTCTGGATGCAC : TGCTTTGTTTGAAGAGTTGCGGAAACGACGAGTGGAAGAATTGAAGCGGGAATTGGTGAGATCTGAGAGCTCCATTGG : GTCACTTGAGTCAAAGATTGAAAGGCTACAGGCTGAGAGAGAGCGATCTGATCAGATAGACCACGGTTTGAGTCGCACTAAATCTCCTGCTCCTCAGACAAAATCAGAAGATATCGAGTCTTCTGTGAAAGAAGAAGCAAAGGATGGGTTGTCTGCTGGCAGCTTCACGCTTGATATTAGAACAAACGGGTCCTCCGAGTCTCAGGTTCCCACCATACCCTCAGCTACAGAGGCAGTCGTGAAGCTAGAACTTTCAGAGTTTTGGGGACGGGACAAAGCTCCAAGTACAAGCAAGGTTCCAGAGTCTGCGAATGGAAATGGTGGGGCTGTGA</gDNA_template>
            <first_frame> A  L  L  W  M  H  :  C  F  V  *  R  V  A  E  T  T  S  G  R  I  E  A  G  I  G  E  I  *  E  L  H  W  :  V  T  *  V  K  D  *  K  A  T  G  *  E  R  A  I  *  S  D  R  P  R  F  E  S  H  *  I  S  C  S  S  D  K  I  R  R  Y  R  V  F  C  E  R  R  S  K  G  W  V  V  C  W  Q  L  H  A  *  Y  *  N  K  R  V  L  R  V  S  G  S  H  H  T  L  S  Y  R  G  S  R  E  A  R  T  F  R  V  L  G  T  G  Q  S  S  K  Y  K  Q  G  S  R  V  C  E  W  K  W  W  G  C   </first_frame>
            <second_frame>  R  Y  S  G  C  T :   A  L  F  E  E  L  R  K  R  R  V  E  E  L  K  R  E  L  V  R  S  E  S  S  I  G :   S  L  E  S  K  I  E  R  L  Q  A  E  R  E  R  S  D  Q  I  D  H  G  L  S  R  T  K  S  P  A  P  Q  T  K  S  E  D  I  E  S  S  V  K  E  E  A  K  D  G  L  S  A  G  S  F  T  L  D  I  R  T  N  G  S  S  E  S  Q  V  P  T  I  P  S  A  T  E  A  V  V  K  L  E  L  S  E  F  W  G  R  D  K  A  P  S  T  S  K  V  P  E  S  A  N  G  N  G  G  A  V  </second_frame>
            <third_frame>   A  T  L  D  A   : L  L  C  L  K  S  C  G  N  D  E  W  K  N  *  S  G  N  W  *  D  L  R  A  P  L   : G  H  L  S  Q  R  L  K  G  Y  R  L  R  E  S  D  L  I  R  *  T  T  V  *  V  A  L  N  L  L  L  L  R  Q  N  Q  K  I  S  S  L  L  *  K  K  K  Q  R  M  G  C  L  L  A  A  S  R  L  I  L  E  Q  T  G  P  P  S  L  R  F  P  P  Y  P  Q  L  Q  R  Q  S  *  S  *  N  F  Q  S  F  G  D  G  T  K  L  Q  V  Q  A  R  F  Q  S  L  R  M  E  M  V  G  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34277" stop="34293"/>
                    <exon start="34554" stop="34631"/>
                    <exon start="34858" stop="35188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYSGCTALFEELRKRRVEELKRELVRSESSIGSLESKIERLQAERERSDQIDHGLSRTKSPAPQTKSEDIESSVKEEAKDGLSAGSFTLDIRTNGSSESQVPTIPSATEAVVKLELSEFWGRDKAPSTSKVPESANGNGGAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44547" PGL_stop="51805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44547" e_stop="44859"/>
            <exon e_start="46556" e_stop="46654"/>
            <exon e_start="46754" e_stop="46861"/>
            <exon e_start="47100" e_stop="47135"/>
            <exon e_start="47422" e_stop="47538"/>
            <exon e_start="47690" e_stop="47773"/>
            <exon e_start="47877" e_stop="47995"/>
            <exon e_start="48622" e_stop="48723"/>
            <exon e_start="49297" e_stop="49413"/>
            <exon e_start="49503" e_stop="49568"/>
            <exon e_start="49821" e_stop="49887"/>
            <exon e_start="50591" e_stop="50644"/>
            <exon e_start="50829" e_stop="50918"/>
            <exon e_start="51097" e_stop="51123"/>
            <exon e_start="51244" e_stop="51270"/>
            <exon e_start="51402" e_stop="51805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.659" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44547" e_stop="44859" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46556" e_stop="46654" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46754" e_stop="46861" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.935">
            <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47100" e_stop="47135" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.659">
            <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="47422" e_stop="47538" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.828" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47690" e_stop="47773" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47877" e_stop="47995" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48622" e_stop="48723" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49297" e_stop="49413" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.950">
            <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49503" e_stop="49568" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.963" acc_prob="0.952">
            <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49821" e_stop="49887" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.689">
            <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="50591" e_stop="50644" e_length="54"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="50829" e_stop="50918" e_length="90"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50919" i_stop="51096" i_length="178"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="51097" e_stop="51123" e_length="27"/>
          </exon>
          <intron i_serial="14" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="51124" i_stop="51243" i_length="120"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="51244" e_stop="51270" e_length="27"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51271" i_stop="51401" i_length="131"/>
          </intron>
          <exon e_serial="16" e_score="0.990">
            <gDNA_exon_boundary e_start="51402" e_stop="51805" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44547" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44554" stop="44821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44560" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44572" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44627" stop="44845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44735" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48704" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTCCAACAATTTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAG : TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGG : GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG : ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG : GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG : GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG : TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG : GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG : GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG : AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG : ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG : AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG : GGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG : GATTCAAATTCTGAAGAGTCTGTGAAG : AGGCACGTTGTTGATGTGCGATCTGAG : ATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAATACATT</gDNA_template>
            <first_frame> T  F  Q  Q  F  R  L  S  Q  R  L  F  L  L  P  N  P  P  P  P  S  L  T  P  P  P  P  T  P  P  T  P  P  T  A  T  L  C  S  L  L  S  I  S  I  L  Y  L  Y  A  Y  L  Y  I  Y  V  D  L  S  H  F  L  F  C  F  C  *  *  R  L  E  L  V  L  Q  G  S  L  F  F  S  L  F  K  I  L  E  L  L  G  C  Y  F  A  T  N  P  C  W  V  F  S  S  *   : V  F  D  E  N  F  F  C  F  I  F  A  C  N  R  Q  L  N  Y  G  G  V  S  A  E  E  K  E  C  S  P  *  R   : G  N  M  W  S  K  D  E  T  A  T  I  Y  V  D  H  L  Y  S  Y  V  V  Y  C  I  *  D  H  Q  L  S  V  S  T  D  R   : D  G  V  K  V  G  S  V  L  F  F  K   : G  L  *  Y  G  Y  E  K  L  A  Q  F  T  A  W  Y  Y  P  S  K  I  R  S  G  V  K  A  S  V  V  N  N  *  F  K  V  K  G  K   : G  *  Q  F  *  L  S  *  F  I  G  S  S  S  W  H  Q  T  E  E  Q  C  *  C  S  R  P  K   : V  S  F  S  K  F  Y  C  H  S  I  P  L  *  W  *  C  *  W  V  G  R  P  P  M  E  *  R  C  H  S  H  C  C  S  Q  S  D  K  M  :  V  V  C  E  E  I  F  T  S  C  S  C  F  N  L  *  L  H  F  P  L  G  *  R  F  G  C  G  E  F  P  S  W  K  :  V  P  *  N  S  K  I  *  R  T  G  N  F  S  A  S  F  R  P  E  F  N  W  Y  P  S  *  N  H  N  K  K  Q  N  K  *  V  P  Q  :  K  G  L  R  Y  *  R  *  Y  E  V  F  R  R  K  R  R  S  P  M  H  R  :  I  C  G  G  N  G  S  G  L  F  Q  I  C  M  A  L  C  L  A  S  Y  T   : E  *  S  C  S  W  M  G  N  G  H  E  T  W  L  L  C  T   : G  R  S  I  Q  K  G  G  S  S  *  *  *  I  C  S  A  P  E  H  P  N  F  G  R  T  I  T  E  K   : G  F  K  F  *  R  V  C  E   : E  A  R  C  *  C  A  I  *   : D  S  E  T  I  N  L  *  A  A  N  I  Q  G  S  M  G  T  S  C  E  A  G  Q  E  L  G  R  S  V  *  S  *  P  E  T  *  T  A  V  *  T  K  A  K  I  K  G  E  E  A  E  I  S  N  G  I  D  K  T  K  G  S  *  V  E  P  C  N  L  F  F  L  F  R  P  H  E  S  H  H  *  F  I  T  Y  I  G  L  V  S  P  N  F  S  S  F  *  L  Y  F  F  S  L  L  I  Y  V  H  Q  F  F  F  L  *  L  A  F  G  Y  H  T  V  S  F  D  F  K  F  Q  F  L  Q  Y  I </first_frame>
            <second_frame>  L  S  N  N  F  V  S  L  K  D  S  F  F  C  L  T  L  L  L  L  L  *  P  H  P  H  L  H  P  L  P  P  P  L  L  P  F  V  H  F  F  Q  Y  L  Y  C  I  Y  M  L  T  Y  T  Y  M  *  I  C  P  I  F  C  S  V  F  A  D  K  D  L  N  L  F  F  K  V  H  F  F  F  H  F  S  R  F  W  S  C  W  V  A  I  L  L  Q  T  L  V  G  F  S  V  L  E  :  C  S  M  R  T  F  S  V  S  Y  S  P  A  T  G  N  *  I  M  A  V  F  L  L  K  K  R  S  V  L  L  D  G  :  G  T  C  G  V  K  M  R  Q  L  P  F  M  W  I  I  C  I  V  M  L  F  I  V  Y  R  T  T  N  Y  Q  Y  Q  Q  T  E  :  M  E  S  R  L  D  P  F  Y  S  S  K  :  D  S  S  M  D  M  R  S  L  H  S  L  P  R  G  I  I  Q  A  R  S  D  L  E  L  K  P  L  W  S  T  T  S  S  K  S  K  A  K  :  A  S  N  S  S  S  H  N  L  L  A  V  P  V  G  I  K  Q  K  S  N  V  D  A  L  V  Q  K  :  F  L  S  A  N  F  T  V  I  L  F  H  Y  D  G  N  V  D  G  W  E  D  L  Q  W  S  K  D  A  I  H  I  V  A  H  N  Q  T  K  W :   W  F  A  K  R  F  L  H  P  A  V  V  S  I  Y  D  Y  I  F  L  W  D  E  D  L  G  V  E  N  F  H  P  G  R :   Y  L  E  I  V  K  S  E  G  L  E  I  S  Q  P  A  L  D  P  N  S  T  G  I  H  H  R  I  T  I  R  S  R  T  N  R  F  H  R :   R  V  Y  D  I  R  G  S  T  K  C  S  D  E  S  E  G  P  P  C  T  G :   F  V  E  G  M  A  P  V  F  S  R  S  A  W  L  C  A  W  H  L  I  Q  :  N  D  L  V  H  G  W  G  M  D  M  K  L  G  Y  C  A  Q  :  G  D  R  S  K  K  V  G  V  V  D  S  E  Y  V  V  H  Q  S  I  Q  T  L  G  G  Q  S  L  K  K  :  D  S  N  S  E  E  S  V  K  :  R  H  V  V  D  V  R  S  E  :  I  R  R  Q  S  T  Y  E  L  Q  I  F  K  D  R  W  E  R  A  V  K  Q  D  K  N  W  A  D  P  F  K  A  S  Q  R  R  R  Q  L  Y  K  Q  R  R  K  S  K  V  K  K  L  R  *  A  M  G  *  I  K  Q  K  V  H  R  L  S  L  V  I  C  S  F  F  L  G  P  M  N  L  I  I  S  S  L  H  I  *  V  *  F  L  L  I  F  L  L  F  N  F  I  F  F  H  F  S  F  M  Y  I  N  F  F  F  C  N  *  P  S  V  T  T  L  F  L  L  I  L  S  S  S  F  F  N  T   </second_frame>
            <third_frame>   F  P  T  I  S  S  L  S  K  T  L  S  F  A  *  P  S  S  S  F  F  N  P  T  P  T  Y  T  P  Y  P  P  H  C  Y  P  L  F  T  S  F  N  I  Y  T  V  S  I  C  L  P  I  H  I  C  R  F  V  P  F  S  V  L  F  L  L  I  K  T  *  T  C  S  S  R  F  T  F  F  F  T  F  Q  D  S  G  A  V  G  L  L  F  C  Y  K  P  L  L  G  F  Q  F  L  S :   V  R  *  E  L  F  L  F  H  I  R  L  Q  Q  A  I  K  L  W  R  C  F  C  *  R  K  G  V  F  S  L  T  G :   E  H  V  E  *  R  *  D  S  Y  H  L  C  G  S  S  V  *  L  C  C  L  L  Y  I  G  P  P  I  I  S  I  N  R  Q  R :   W  S  Q  G  W  I  R  F  I  L  Q  R :   T  L  V  W  I  *  E  A  C  T  V  Y  R  V  V  L  S  K  Q  D  Q  I  W  S  *  S  L  C  G  Q  Q  L  V  Q  S  Q  R  Q  R :   L  A  I  L  A  L  I  I  Y  W  Q  F  Q  L  A  S  N  R  R  A  M  L  M  L  S  S  K  S :   F  F  Q  Q  I  L  L  S  F  Y  S  T  M  M  V  M  L  M  G  G  K  T  S  N  G  V  K  M  P  F  T  L  L  L  T  I  R  Q  N   : G  G  L  R  R  D  F  Y  I  L  Q  L  F  Q  F  M  I  T  F  S  F  G  M  K  I  W  V  W  R  I  S  I  L  E   : G  T  L  K  *  *  N  L  K  D  W  K  F  L  S  Q  L  *  T  R  I  Q  L  V  S  I  I  E  S  Q  *  E  A  E  Q  I  G  S  T   : E  G  S  T  I  L  E  V  V  R  S  V  Q  T  K  A  K  V  P  H  A  P   : D  L  W  R  E  W  L  R  S  F  P  D  L  H  G  F  V  P  G  I  L  Y  R :   M  I  L  F  M  D  G  E  W  T  *  N  L  V  I  V  H  R :   E  I  D  P  K  R  W  E  *  L  I  V  N  M  *  C  T  R  A  S  K  L  W  A  D  N  H  *  K  R :   I  Q  I  L  K  S  L  *  R :   G  T  L  L  M  C  D  L  R :   F  G  D  N  Q  L  M  S  C  K  Y  S  R  I  D  G  N  E  L  *  S  R  T  R  T  G  Q  I  R  L  K  L  A  R  D  V  D  S  C  I  N  K  G  E  N  Q  R  *  R  S  *  D  K  Q  W  D  R  *  N  K  R  F  I  G  *  A  L  *  F  V  L  S  F  *  A  P  *  I  S  S  L  V  H  Y  I  Y  R  F  S  F  S  *  F  F  F  F  L  T  L  F  F  F  T  S  H  L  C  T  S  I  F  F  F  V  T  S  L  R  L  P  H  C  F  F  *  F  *  V  P  V  S  S  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46607" stop="46654"/>
                    <exon start="46754" stop="46861"/>
                    <exon start="47100" stop="47135"/>
                    <exon start="47422" stop="47538"/>
                    <exon start="47690" stop="47773"/>
                    <exon start="47877" stop="47995"/>
                    <exon start="48622" stop="48723"/>
                    <exon start="49297" stop="49413"/>
                    <exon start="49503" stop="49568"/>
                    <exon start="49821" stop="49887"/>
                    <exon start="50591" stop="50644"/>
                    <exon start="50829" stop="50918"/>
                    <exon start="51097" stop="51123"/>
                    <exon start="51244" stop="51270"/>
                    <exon start="51402" stop="51560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAVFLLKKRSVLLDGGTCGVKMRQLPFMWIICIVMLFIVYRTTNYQYQQTEMESRLDPFYSSKDSSMDMRSLHSLPRGIIQARSDLELKPLWSTTSSKSKAKASNSSSHNLLAVPVGIKQKSNVDALVQKFLSANFTVILFHYDGNVDGWEDLQWSKDAIHIVAHNQTKWWFAKRFLHPAVVSIYDYIFLWDEDLGVENFHPGRYLEIVKSEGLEISQPALDPNSTGIHHRITIRSRTNRFHRRVYDIRGSTKCSDESEGPPCTGFVEGMAPVFSRSAWLCAWHLIQNDLVHGWGMDMKLGYCAQGDRSKKVGVVDSEYVVHQSIQTLGGQSLKKDSNSEESVKRHVVDVRSEIRRQSTYELQIFKDRWERAVKQDKNWADPFKASQRRRQLYKQRRKSKVKKLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44547" stop="44747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFQQFRLSQRLFLLPNPPPPSLTPPPPTPPTPPTATLCSLLSISILYLYAYLYIYVDLSHFLFCFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44716" stop="44859"/>
                    <exon start="46556" stop="46606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICPIFCSVFADKDLNLFFKVHFFFHFSRFWSCWVAILLQTLVGFSVLECSMRTFSVSYSPATGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44547" e_stop="44859"/>
            <exon e_start="46556" e_stop="46654"/>
            <exon e_start="46754" e_stop="46861"/>
            <exon e_start="47100" e_stop="47135"/>
            <exon e_start="47422" e_stop="47538"/>
            <exon e_start="47690" e_stop="47773"/>
            <exon e_start="47877" e_stop="47995"/>
            <exon e_start="48622" e_stop="48723"/>
            <exon e_start="49297" e_stop="49413"/>
            <exon e_start="49503" e_stop="49711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.659" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.981" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44547" e_stop="44859" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44860" i_stop="46555" i_length="1696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46556" e_stop="46654" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46754" e_stop="46861" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.935">
            <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47100" e_stop="47135" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.659">
            <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="47422" e_stop="47538" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.828" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47690" e_stop="47773" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47877" e_stop="47995" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48622" e_stop="48723" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49297" e_stop="49413" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.950">
            <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="0.971">
            <gDNA_exon_boundary e_start="49503" e_stop="49711" e_length="209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44547" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44554" stop="44821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44560" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44572" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44627" stop="44845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44735" stop="44859"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48625" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTTCCAACAATTTCGTCTCTCTCAAAGACTCTTTCTTTTGCCTAACCCTCCTCCTCCTTCTTTAACCCCACCCCCACCTACACCCCCTACCCCCCCCACTGCTACCCTTTGTTCACTTCTTTCAATATCTATACTGTATCTATATGCTTACCTATACATATATGTAGATTTGTCCCATTTTCTGTTCTGTTTTTGCTGATAAAGACTTGAACTTGTTCTTCAAGGTTCACTTTTTTTTTCACTTTTCAAGATTCTGGAGCTGTTGGGTTGCTATTTTGCTACAAACCCTTGTTGGGTTTTCAGTTCTTGAG : TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGG : GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG : ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG : GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG : GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG : TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG : GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG : GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG : AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGGGTAAGTGTAACACAATTACTGGATAAGACTGTTATGAGACTTTGGGCATTGGTTGGTCAGGATAAGTTTTTGCATCAGTTCCTGATGTTCAAGTTGACCCTGTTATATATTCTCTTCCTACAATTTTGTTCTACAAAAAAAAA</gDNA_template>
            <first_frame> T  F  Q  Q  F  R  L  S  Q  R  L  F  L  L  P  N  P  P  P  P  S  L  T  P  P  P  P  T  P  P  T  P  P  T  A  T  L  C  S  L  L  S  I  S  I  L  Y  L  Y  A  Y  L  Y  I  Y  V  D  L  S  H  F  L  F  C  F  C  *  *  R  L  E  L  V  L  Q  G  S  L  F  F  S  L  F  K  I  L  E  L  L  G  C  Y  F  A  T  N  P  C  W  V  F  S  S  *   : V  F  D  E  N  F  F  C  F  I  F  A  C  N  R  Q  L  N  Y  G  G  V  S  A  E  E  K  E  C  S  P  *  R   : G  N  M  W  S  K  D  E  T  A  T  I  Y  V  D  H  L  Y  S  Y  V  V  Y  C  I  *  D  H  Q  L  S  V  S  T  D  R   : D  G  V  K  V  G  S  V  L  F  F  K   : G  L  *  Y  G  Y  E  K  L  A  Q  F  T  A  W  Y  Y  P  S  K  I  R  S  G  V  K  A  S  V  V  N  N  *  F  K  V  K  G  K   : G  *  Q  F  *  L  S  *  F  I  G  S  S  S  W  H  Q  T  E  E  Q  C  *  C  S  R  P  K   : V  S  F  S  K  F  Y  C  H  S  I  P  L  *  W  *  C  *  W  V  G  R  P  P  M  E  *  R  C  H  S  H  C  C  S  Q  S  D  K  M  :  V  V  C  E  E  I  F  T  S  C  S  C  F  N  L  *  L  H  F  P  L  G  *  R  F  G  C  G  E  F  P  S  W  K  :  V  P  *  N  S  K  I  *  R  T  G  N  F  S  A  S  F  R  P  E  F  N  W  Y  P  S  *  N  H  N  K  K  Q  N  K  *  V  P  Q  :  K  G  L  R  Y  *  R  *  Y  E  V  F  R  R  K  R  R  S  P  M  H  R  V  S  V  T  Q  L  L  D  K  T  V  M  R  L  W  A  L  V  G  Q  D  K  F  L  H  Q  F  L  M  F  K  L  T  L  L  Y  I  L  F  L  Q  F  C  S  T  K  K   </first_frame>
            <second_frame>  L  S  N  N  F  V  S  L  K  D  S  F  F  C  L  T  L  L  L  L  L  *  P  H  P  H  L  H  P  L  P  P  P  L  L  P  F  V  H  F  F  Q  Y  L  Y  C  I  Y  M  L  T  Y  T  Y  M  *  I  C  P  I  F  C  S  V  F  A  D  K  D  L  N  L  F  F  K  V  H  F  F  F  H  F  S  R  F  W  S  C  W  V  A  I  L  L  Q  T  L  V  G  F  S  V  L  E  :  C  S  M  R  T  F  S  V  S  Y  S  P  A  T  G  N  *  I  M  A  V  F  L  L  K  K  R  S  V  L  L  D  G  :  G  T  C  G  V  K  M  R  Q  L  P  F  M  W  I  I  C  I  V  M  L  F  I  V  Y  R  T  T  N  Y  Q  Y  Q  Q  T  E  :  M  E  S  R  L  D  P  F  Y  S  S  K  :  D  S  S  M  D  M  R  S  L  H  S  L  P  R  G  I  I  Q  A  R  S  D  L  E  L  K  P  L  W  S  T  T  S  S  K  S  K  A  K  :  A  S  N  S  S  S  H  N  L  L  A  V  P  V  G  I  K  Q  K  S  N  V  D  A  L  V  Q  K  :  F  L  S  A  N  F  T  V  I  L  F  H  Y  D  G  N  V  D  G  W  E  D  L  Q  W  S  K  D  A  I  H  I  V  A  H  N  Q  T  K  W :   W  F  A  K  R  F  L  H  P  A  V  V  S  I  Y  D  Y  I  F  L  W  D  E  D  L  G  V  E  N  F  H  P  G  R :   Y  L  E  I  V  K  S  E  G  L  E  I  S  Q  P  A  L  D  P  N  S  T  G  I  H  H  R  I  T  I  R  S  R  T  N  R  F  H  R :   R  V  Y  D  I  R  G  S  T  K  C  S  D  E  S  E  G  P  P  C  T  G  *  V  *  H  N  Y  W  I  R  L  L  *  D  F  G  H  W  L  V  R  I  S  F  C  I  S  S  *  C  S  S  *  P  C  Y  I  F  S  S  Y  N  F  V  L  Q  K  K  </second_frame>
            <third_frame>   F  P  T  I  S  S  L  S  K  T  L  S  F  A  *  P  S  S  S  F  F  N  P  T  P  T  Y  T  P  Y  P  P  H  C  Y  P  L  F  T  S  F  N  I  Y  T  V  S  I  C  L  P  I  H  I  C  R  F  V  P  F  S  V  L  F  L  L  I  K  T  *  T  C  S  S  R  F  T  F  F  F  T  F  Q  D  S  G  A  V  G  L  L  F  C  Y  K  P  L  L  G  F  Q  F  L  S :   V  R  *  E  L  F  L  F  H  I  R  L  Q  Q  A  I  K  L  W  R  C  F  C  *  R  K  G  V  F  S  L  T  G :   E  H  V  E  *  R  *  D  S  Y  H  L  C  G  S  S  V  *  L  C  C  L  L  Y  I  G  P  P  I  I  S  I  N  R  Q  R :   W  S  Q  G  W  I  R  F  I  L  Q  R :   T  L  V  W  I  *  E  A  C  T  V  Y  R  V  V  L  S  K  Q  D  Q  I  W  S  *  S  L  C  G  Q  Q  L  V  Q  S  Q  R  Q  R :   L  A  I  L  A  L  I  I  Y  W  Q  F  Q  L  A  S  N  R  R  A  M  L  M  L  S  S  K  S :   F  F  Q  Q  I  L  L  S  F  Y  S  T  M  M  V  M  L  M  G  G  K  T  S  N  G  V  K  M  P  F  T  L  L  L  T  I  R  Q  N   : G  G  L  R  R  D  F  Y  I  L  Q  L  F  Q  F  M  I  T  F  S  F  G  M  K  I  W  V  W  R  I  S  I  L  E   : G  T  L  K  *  *  N  L  K  D  W  K  F  L  S  Q  L  *  T  R  I  Q  L  V  S  I  I  E  S  Q  *  E  A  E  Q  I  G  S  T   : E  G  S  T  I  L  E  V  V  R  S  V  Q  T  K  A  K  V  P  H  A  P  G  K  C  N  T  I  T  G  *  D  C  Y  E  T  L  G  I  G  W  S  G  *  V  F  A  S  V  P  D  V  Q  V  D  P  V  I  Y  S  L  P  T  I  L  F  Y  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46607" stop="46654"/>
                    <exon start="46754" stop="46861"/>
                    <exon start="47100" stop="47135"/>
                    <exon start="47422" stop="47538"/>
                    <exon start="47690" stop="47773"/>
                    <exon start="47877" stop="47995"/>
                    <exon start="48622" stop="48723"/>
                    <exon start="49297" stop="49413"/>
                    <exon start="49503" stop="49572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAVFLLKKRSVLLDGGTCGVKMRQLPFMWIICIVMLFIVYRTTNYQYQQTEMESRLDPFYSSKDSSMDMRSLHSLPRGIIQARSDLELKPLWSTTSSKSKAKASNSSSHNLLAVPVGIKQKSNVDALVQKFLSANFTVILFHYDGNVDGWEDLQWSKDAIHIVAHNQTKWWFAKRFLHPAVVSIYDYIFLWDEDLGVENFHPGRYLEIVKSEGLEISQPALDPNSTGIHHRITIRSRTNRFHRRVYDIRGSTKCSDESEGPPCTG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44547" stop="44747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFQQFRLSQRLFLLPNPPPPSLTPPPPTPPTPPTATLCSLLSISILYLYAYLYIYVDLSHFLFCFC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44716" stop="44859"/>
                    <exon start="46556" stop="46606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICPIFCSVFADKDLNLFFKVHFFFHFSRFWSCWVAILLQTLVGFSVLECSMRTFSVSYSPATGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45680" e_stop="45840"/>
            <exon e_start="46556" e_stop="46654"/>
            <exon e_start="46754" e_stop="46861"/>
            <exon e_start="47100" e_stop="47135"/>
            <exon e_start="47422" e_stop="47538"/>
            <exon e_start="47690" e_stop="47773"/>
            <exon e_start="47877" e_stop="47995"/>
            <exon e_start="48622" e_stop="48723"/>
            <exon e_start="49297" e_stop="49413"/>
            <exon e_start="49503" e_stop="49568"/>
            <exon e_start="49821" e_stop="49887"/>
            <exon e_start="50591" e_stop="50644"/>
            <exon e_start="50829" e_stop="50918"/>
            <exon e_start="51097" e_stop="51123"/>
            <exon e_start="51244" e_stop="51270"/>
            <exon e_start="51402" e_stop="51805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.991" e_score="0.994"/>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.659" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.732" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.689" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="45680" e_stop="45840" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45841" i_stop="46555" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46556" e_stop="46654" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46655" i_stop="46753" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46754" e_stop="46861" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.935">
            <gDNA_intron_boundary i_start="46862" i_stop="47099" i_length="238"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47100" e_stop="47135" e_length="36"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.659">
            <gDNA_intron_boundary i_start="47136" i_stop="47421" i_length="286"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47422" e_stop="47538" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.828" acc_prob="0.981">
            <gDNA_intron_boundary i_start="47539" i_stop="47689" i_length="151"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47690" e_stop="47773" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.732">
            <gDNA_intron_boundary i_start="47774" i_stop="47876" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47877" e_stop="47995" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47996" i_stop="48621" i_length="626"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="48622" e_stop="48723" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48724" i_stop="49296" i_length="573"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49297" e_stop="49413" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.950">
            <gDNA_intron_boundary i_start="49414" i_stop="49502" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="49503" e_stop="49568" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.963" acc_prob="0.952">
            <gDNA_intron_boundary i_start="49569" i_stop="49820" i_length="252"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="49821" e_stop="49887" e_length="67"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.689">
            <gDNA_intron_boundary i_start="49888" i_stop="50590" i_length="703"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="50591" e_stop="50644" e_length="54"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.989">
            <gDNA_intron_boundary i_start="50645" i_stop="50828" i_length="184"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="50829" e_stop="50918" e_length="90"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50919" i_stop="51096" i_length="178"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="51097" e_stop="51123" e_length="27"/>
          </exon>
          <intron i_serial="14" don_prob="0.992" acc_prob="0.981">
            <gDNA_intron_boundary i_start="51124" i_stop="51243" i_length="120"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="51244" e_stop="51270" e_length="27"/>
          </exon>
          <intron i_serial="15" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="51271" i_stop="51401" i_length="131"/>
          </intron>
          <exon e_serial="16" e_score="0.990">
            <gDNA_exon_boundary e_start="51402" e_stop="51805" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45680" stop="45840"/>
              <exon start="46556" stop="46654"/>
              <exon start="46754" stop="46861"/>
              <exon start="47100" stop="47135"/>
              <exon start="47422" stop="47499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47489" stop="47538"/>
              <exon start="47690" stop="47773"/>
              <exon start="47877" stop="47995"/>
              <exon start="48622" stop="48723"/>
              <exon start="49297" stop="49328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48704" stop="48723"/>
              <exon start="49297" stop="49413"/>
              <exon start="49503" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49535" stop="49568"/>
              <exon start="49821" stop="49887"/>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="50644"/>
              <exon start="50829" stop="50918"/>
              <exon start="51097" stop="51123"/>
              <exon start="51244" stop="51270"/>
              <exon start="51402" stop="51805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375104" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTCGGTCGGTTTGTTGGTGGGGATGGAAAGAGGCAAAGAATGAGTTGTCTTGGAATAGCTTACTGAACTTGCAACTGCTTTCCTTTTGTTGATAAGGGCGTGGTCTACAATTAATTTGCTCACACCTCAGCCATAACACTTGCTATCTTTCACTAG : TGTTCGATGAGAACTTTTTCTGTTTCATATTCGCCTGCAACAGGCAATTAAATTATGGCGGTGTTTCTGCTGAAGAAAAGGAGTGTTCTCCTTGACGGG : GGAACATGTGGAGTAAAGATGAGACAGCTACCATTTATGTGGATCATCTGTATAGTTATGTTGTTTATTGTATATAGGACCACCAATTATCAGTATCAACAGACAGAG : ATGGAGTCAAGGTTGGATCCGTTTTATTCTTCAAAG : GACTCTAGTATGGATATGAGAAGCTTGCACAGTTTACCGCGTGGTATTATCCAAGCAAGATCAGATCTGGAGTTAAAGCCTCTGTGGTCAACAACTAGTTCAAAGTCAAAGGCAAAG : GCTAGCAATTCTAGCTCTCATAATTTATTGGCAGTTCCAGTTGGCATCAAACAGAAGAGCAATGTTGATGCTCTCGTCCAAAAG : TTTCTTTCAGCAAATTTTACTGTCATTCTATTCCACTATGATGGTAATGTTGATGGGTGGGAAGACCTCCAATGGAGTAAAGATGCCATTCACATTGTTGCTCACAATCAGACAAAATG : GTGGTTTGCGAAGAGATTTTTACATCCTGCAGTTGTTTCAATTTATGATTACATTTTCCTTTGGGATGAAGATTTGGGTGTGGAGAATTTCCATCCTGGAAG : GTACCTTGAAATAGTAAAATCTGAAGGACTGGAAATTTCTCAGCCAGCTTTAGACCCGAATTCAACTGGTATCCATCATAGAATCACAATAAGAAGCAGAACAAATAGGTTCCACAG : AAGGGTCTACGATATTAGAGGTAGTACGAAGTGTTCAGACGAAAGCGAAGGTCCCCCATGCACCGG : ATTTGTGGAGGGAATGGCTCCGGTCTTTTCCAGATCTGCATGGCTTTGTGCCTGGCATCTTATACAG : AATGATCTTGTTCATGGATGGGGAATGGACATGAAACTTGGTTATTGTGCACAG : GGAGATCGATCCAAAAAGGTGGGAGTAGTTGATAGTGAATATGTAGTGCACCAGAGCATCCAAACTTTGGGCGGACAATCACTGAAAAAG : GATTCAAATTCTGAAGAGTCTGTGAAG : AGGCACGTTGTTGATGTGCGATCTGAG : ATTCGGAGACAATCAACTTATGAGCTGCAAATATTCAAGGATCGATGGGAACGAGCTGTGAAGCAGGACAAGAACTGGGCAGATCCGTTTAAAGCTAGCCAGAGACGTAGACAGCTGTATAAACAAAGGCGAAAATCAAAGGTGAAGAAGCTGAGATAAGCAATGGGATAGATAAAACAAAAGGTTCATAGGTTGAGCCTTGTAATTTGTTCTTTCTTTTTAGGCCCCATGAATCTCATCATTAGTTCATTACATATATAGGTTTAGTTTCTCCTAATTTTTCTTCTTTTTAACTTTATTTTTTTTCACTTCTCATTTATGTACATCAATTTTTTTTTTTGTAACTAGCCTTCGGTTACCACACTGTTTCTTTTGATTTTAAGTTCCAGTTTCTTCAATACATT</gDNA_template>
            <first_frame> I  F  S  V  G  L  L  V  G  M  E  R  G  K  E  *  V  V  L  E  *  L  T  E  L  A  T  A  F  L  L  L  I  R  A  W  S  T  I  N  L  L  T  P  Q  P  *  H  L  L  S  F  T  S :   V  R  *  E  L  F  L  F  H  I  R  L  Q  Q  A  I  K  L  W  R  C  F  C  *  R  K  G  V  F  S  L  T  G :   E  H  V  E  *  R  *  D  S  Y  H  L  C  G  S  S  V  *  L  C  C  L  L  Y  I  G  P  P  I  I  S  I  N  R  Q  R :   W  S  Q  G  W  I  R  F  I  L  Q  R :   T  L  V  W  I  *  E  A  C  T  V  Y  R  V  V  L  S  K  Q  D  Q  I  W  S  *  S  L  C  G  Q  Q  L  V  Q  S  Q  R  Q  R :   L  A  I  L  A  L  I  I  Y  W  Q  F  Q  L  A  S  N  R  R  A  M  L  M  L  S  S  K  S :   F  F  Q  Q  I  L  L  S  F  Y  S  T  M  M  V  M  L  M  G  G  K  T  S  N  G  V  K  M  P  F  T  L  L  L  T  I  R  Q  N   : G  G  L  R  R  D  F  Y  I  L  Q  L  F  Q  F  M  I  T  F  S  F  G  M  K  I  W  V  W  R  I  S  I  L  E   : G  T  L  K  *  *  N  L  K  D  W  K  F  L  S  Q  L  *  T  R  I  Q  L  V  S  I  I  E  S  Q  *  E  A  E  Q  I  G  S  T   : E  G  S  T  I  L  E  V  V  R  S  V  Q  T  K  A  K  V  P  H  A  P   : D  L  W  R  E  W  L  R  S  F  P  D  L  H  G  F  V  P  G  I  L  Y  R :   M  I  L  F  M  D  G  E  W  T  *  N  L  V  I  V  H  R :   E  I  D  P  K  R  W  E  *  L  I  V  N  M  *  C  T  R  A  S  K  L  W  A  D  N  H  *  K  R :   I  Q  I  L  K  S  L  *  R :   G  T  L  L  M  C  D  L  R :   F  G  D  N  Q  L  M  S  C  K  Y  S  R  I  D  G  N  E  L  *  S  R  T  R  T  G  Q  I  R  L  K  L  A  R  D  V  D  S  C  I  N  K  G  E  N  Q  R  *  R  S  *  D  K  Q  W  D  R  *  N  K  R  F  I  G  *  A  L  *  F  V  L  S  F  *  A  P  *  I  S  S  L  V  H  Y  I  Y  R  F  S  F  S  *  F  F  F  F  L  T  L  F  F  F  T  S  H  L  C  T  S  I  F  F  F  V  T  S  L  R  L  P  H  C  F  F  *  F  *  V  P  V  S  S  I  H  </first_frame>
            <second_frame>  F  F  R  S  V  C  W  W  G  W  K  E  A  K  N  E  L  S  W  N  S  L  L  N  L  Q  L  L  S  F  C  *  *  G  R  G  L  Q  L  I  C  S  H  L  S  H  N  T  C  Y  L  S  L   : V  F  D  E  N  F  F  C  F  I  F  A  C  N  R  Q  L  N  Y  G  G  V  S  A  E  E  K  E  C  S  P  *  R   : G  N  M  W  S  K  D  E  T  A  T  I  Y  V  D  H  L  Y  S  Y  V  V  Y  C  I  *  D  H  Q  L  S  V  S  T  D  R   : D  G  V  K  V  G  S  V  L  F  F  K   : G  L  *  Y  G  Y  E  K  L  A  Q  F  T  A  W  Y  Y  P  S  K  I  R  S  G  V  K  A  S  V  V  N  N  *  F  K  V  K  G  K   : G  *  Q  F  *  L  S  *  F  I  G  S  S  S  W  H  Q  T  E  E  Q  C  *  C  S  R  P  K   : V  S  F  S  K  F  Y  C  H  S  I  P  L  *  W  *  C  *  W  V  G  R  P  P  M  E  *  R  C  H  S  H  C  C  S  Q  S  D  K  M  :  V  V  C  E  E  I  F  T  S  C  S  C  F  N  L  *  L  H  F  P  L  G  *  R  F  G  C  G  E  F  P  S  W  K  :  V  P  *  N  S  K  I  *  R  T  G  N  F  S  A  S  F  R  P  E  F  N  W  Y  P  S  *  N  H  N  K  K  Q  N  K  *  V  P  Q  :  K  G  L  R  Y  *  R  *  Y  E  V  F  R  R  K  R  R  S  P  M  H  R  :  I  C  G  G  N  G  S  G  L  F  Q  I  C  M  A  L  C  L  A  S  Y  T   : E  *  S  C  S  W  M  G  N  G  H  E  T  W  L  L  C  T   : G  R  S  I  Q  K  G  G  S  S  *  *  *  I  C  S  A  P  E  H  P  N  F  G  R  T  I  T  E  K   : G  F  K  F  *  R  V  C  E   : E  A  R  C  *  C  A  I  *   : D  S  E  T  I  N  L  *  A  A  N  I  Q  G  S  M  G  T  S  C  E  A  G  Q  E  L  G  R  S  V  *  S  *  P  E  T  *  T  A  V  *  T  K  A  K  I  K  G  E  E  A  E  I  S  N  G  I  D  K  T  K  G  S  *  V  E  P  C  N  L  F  F  L  F  R  P  H  E  S  H  H  *  F  I  T  Y  I  G  L  V  S  P  N  F  S  S  F  *  L  Y  F  F  S  L  L  I  Y  V  H  Q  F  F  F  L  *  L  A  F  G  Y  H  T  V  S  F  D  F  K  F  Q  F  L  Q  Y  I </second_frame>
            <third_frame>   F  F  G  R  F  V  G  G  D  G  K  R  Q  R  M  S  C  L  G  I  A  Y  *  T  C  N  C  F  P  F  V  D  K  G  V  V  Y  N  *  F  A  H  T  S  A  I  T  L  A  I  F  H  *  :  C  S  M  R  T  F  S  V  S  Y  S  P  A  T  G  N  *  I  M  A  V  F  L  L  K  K  R  S  V  L  L  D  G  :  G  T  C  G  V  K  M  R  Q  L  P  F  M  W  I  I  C  I  V  M  L  F  I  V  Y  R  T  T  N  Y  Q  Y  Q  Q  T  E  :  M  E  S  R  L  D  P  F  Y  S  S  K  :  D  S  S  M  D  M  R  S  L  H  S  L  P  R  G  I  I  Q  A  R  S  D  L  E  L  K  P  L  W  S  T  T  S  S  K  S  K  A  K  :  A  S  N  S  S  S  H  N  L  L  A  V  P  V  G  I  K  Q  K  S  N  V  D  A  L  V  Q  K  :  F  L  S  A  N  F  T  V  I  L  F  H  Y  D  G  N  V  D  G  W  E  D  L  Q  W  S  K  D  A  I  H  I  V  A  H  N  Q  T  K  W :   W  F  A  K  R  F  L  H  P  A  V  V  S  I  Y  D  Y  I  F  L  W  D  E  D  L  G  V  E  N  F  H  P  G  R :   Y  L  E  I  V  K  S  E  G  L  E  I  S  Q  P  A  L  D  P  N  S  T  G  I  H  H  R  I  T  I  R  S  R  T  N  R  F  H  R :   R  V  Y  D  I  R  G  S  T  K  C  S  D  E  S  E  G  P  P  C  T  G :   F  V  E  G  M  A  P  V  F  S  R  S  A  W  L  C  A  W  H  L  I  Q  :  N  D  L  V  H  G  W  G  M  D  M  K  L  G  Y  C  A  Q  :  G  D  R  S  K  K  V  G  V  V  D  S  E  Y  V  V  H  Q  S  I  Q  T  L  G  G  Q  S  L  K  K  :  D  S  N  S  E  E  S  V  K  :  R  H  V  V  D  V  R  S  E  :  I  R  R  Q  S  T  Y  E  L  Q  I  F  K  D  R  W  E  R  A  V  K  Q  D  K  N  W  A  D  P  F  K  A  S  Q  R  R  R  Q  L  Y  K  Q  R  R  K  S  K  V  K  K  L  R  *  A  M  G  *  I  K  Q  K  V  H  R  L  S  L  V  I  C  S  F  F  L  G  P  M  N  L  I  I  S  S  L  H  I  *  V  *  F  L  L  I  F  L  L  F  N  F  I  F  F  H  F  S  F  M  Y  I  N  F  F  F  C  N  *  P  S  V  T  T  L  F  L  L  I  L  S  S  S  F  F  N  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46607" stop="46654"/>
                    <exon start="46754" stop="46861"/>
                    <exon start="47100" stop="47135"/>
                    <exon start="47422" stop="47538"/>
                    <exon start="47690" stop="47773"/>
                    <exon start="47877" stop="47995"/>
                    <exon start="48622" stop="48723"/>
                    <exon start="49297" stop="49413"/>
                    <exon start="49503" stop="49568"/>
                    <exon start="49821" stop="49887"/>
                    <exon start="50591" stop="50644"/>
                    <exon start="50829" stop="50918"/>
                    <exon start="51097" stop="51123"/>
                    <exon start="51244" stop="51270"/>
                    <exon start="51402" stop="51560"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMAVFLLKKRSVLLDGGTCGVKMRQLPFMWIICIVMLFIVYRTTNYQYQQTEMESRLDPFYSSKDSSMDMRSLHSLPRGIIQARSDLELKPLWSTTSSKSKAKASNSSSHNLLAVPVGIKQKSNVDALVQKFLSANFTVILFHYDGNVDGWEDLQWSKDAIHIVAHNQTKWWFAKRFLHPAVVSIYDYIFLWDEDLGVENFHPGRYLEIVKSEGLEISQPALDPNSTGIHHRITIRSRTNRFHRRVYDIRGSTKCSDESEGPPCTGFVEGMAPVFSRSAWLCAWHLIQNDLVHGWGMDMKLGYCAQGDRSKKVGVVDSEYVVHQSIQTLGGQSLKKDSNSEESVKRHVVDVRSEIRRQSTYELQIFKDRWERAVKQDKNWADPFKASQRRRQLYKQRRKSKVKKLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52759" PGL_stop="55829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52759" e_stop="53458"/>
            <exon e_start="54692" e_stop="54989"/>
            <exon e_start="55584" e_stop="55829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.757" e_score="0.964"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="52759" e_stop="53458" e_length="700"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.757">
            <gDNA_intron_boundary i_start="53459" i_stop="54691" i_length="1233"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54692" e_stop="54989" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54990" i_stop="55583" i_length="594"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55584" e_stop="55829" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52759" stop="53326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52769" stop="53168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52769" stop="53106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52778" stop="53458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52778" stop="53238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52785" stop="53088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52786" stop="53458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52786" stop="53261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52801" stop="53458"/>
              <exon start="54692" stop="54753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52801" stop="53458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52807" stop="53458"/>
              <exon start="54692" stop="54772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52807" stop="53422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52811" stop="53458"/>
              <exon start="54692" stop="54828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52818" stop="53263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53458"/>
              <exon start="54692" stop="54796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52905" stop="53283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53277" stop="53458"/>
              <exon start="54692" stop="54989"/>
              <exon start="55584" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547962" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53310" stop="53458"/>
              <exon start="54692" stop="54913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53316" stop="53458"/>
              <exon start="54692" stop="54989"/>
              <exon start="55584" stop="55754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53316" stop="53458"/>
              <exon start="54692" stop="54989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53335" stop="53458"/>
              <exon start="54692" stop="54855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53346" stop="53458"/>
              <exon start="54692" stop="54989"/>
              <exon start="55584" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578434" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54754" stop="54989"/>
              <exon start="55584" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265408" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54785" stop="54989"/>
              <exon start="55584" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54947" stop="54989"/>
              <exon start="55584" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGGGTTTAACATAAACCCCTTTTTTTCTCTCTCTCTCATCGCTGCGTAAAGCTATGAGTTTAATTGCAGGTTCATACGAGAGATTCATTTGGGGATTCAAGTTGAGATCCCTCAAAAACGATCAGAATTACGAACTAACCCCTCTATTCTCCTTCCCTTCACATCTCTCACCAATTAAATGCACCGCCGTCGCCGGTTCTGCCGCTGTATCCGGCGGCGCCGATGACACTATCAAAATCTATGACCTTTCTACTTGCTCAGAAATTGGGTCACTACACCACTCCGCCACCGTTACTTCACTTTCCTTTTTTACCCCTTCTTCATTCTCCTTCCCTCGTAACCTTATTGCCGCGTCTGAAGATGGTTCGGTTTCCATATATGATGCTGATCCTTTTGTTCATCTCAAGACGGTTAAAGTGCATCGTAAGGCAGTGAATTCTATATGCATTCATCCGTCGGGGAGGTTGGCATTGACTGTTGGAAGAGATGAATGTATGGCTATGGTTAATTTGGTTAGAGGAAGGAGAAGTTTTTATTGTAGGTTGGGAAAAGAAGCTTCTTTAGTTAATTTTAGTGATGGTGGTGAAAAGTTTTTTATGGTTATGGATGATAAGATTTCTGTACATGAATCTGAAGATGCCAAAGCTATTCTAGAGCTTGACAGTAAGAAGAGGGTGCTTTGTGCCACTTATGGGATG : CATGGTATTTTGTTTACTGGGGGAGAGGACCGGAGTATTAAAGCTTGGGACATTACTAGTGGAAAACTTGCATATAGCATTGAAGATGCACATTCTACCCGTGTGAAAGGCATTGTTGTGCTACACAAAAACAGTGATGGTGATGCTGAAGATCATCAACACATAGTAGCATCAGCATCATCAGATGGGGTCATACGTGTTTGGGATGTTCGCATGACTAACAAAGATAAGCCAAATCCACTGGCTGAGGTCAATACAAAATCCAGGCTGACTTGTCTGGCTGGATCATCCATCAAAT : CTATGAAAAGACCACAGGTTGGAAATACTACTTCAAATGGACAACAGCTCGACGCAGGTGAAGAATCATAGTGCTGTAATTTGGTAATGACAATCACATAGTGTATCTGCCATATTTTTCCTTTAGATTCCCCCTCCCCCTGAAGTTGTTGGAATCATATCAATTTTGTTAGTTAAAAGTTGATCACTCGAAATCTATTTTGTAAGGCGTGTGTATTATTTAATTAATGAATATGAGCAGTTATTT</gDNA_template>
            <first_frame> L  G  F  N  I  N  P  F  F  S  L  S  L  I  A  A  *  S  Y  E  F  N  C  R  F  I  R  E  I  H  L  G  I  Q  V  E  I  P  Q  K  R  S  E  L  R  T  N  P  S  I  L  L  P  F  T  S  L  T  N  *  M  H  R  R  R  R  F  C  R  C  I  R  R  R  R  *  H  Y  Q  N  L  *  P  F  Y  L  L  R  N  W  V  T  T  P  L  R  H  R  Y  F  T  F  L  F  Y  P  F  F  I  L  L  P  S  *  P  Y  C  R  V  *  R  W  F  G  F  H  I  *  C  *  S  F  C  S  S  Q  D  G  *  S  A  S  *  G  S  E  F  Y  M  H  S  S  V  G  E  V  G  I  D  C  W  K  R  *  M  Y  G  Y  G  *  F  G  *  R  K  E  K  F  L  L  *  V  G  K  R  S  F  F  S  *  F  *  *  W  W  *  K  V  F  Y  G  Y  G  *  *  D  F  C  T  *  I  *  R  C  Q  S  Y  S  R  A  *  Q  *  E  E  G  A  L  C  H  L  W  D   : A  W  Y  F  V  Y  W  G  R  G  P  E  Y  *  S  L  G  H  Y  *  W  K  T  C  I  *  H  *  R  C  T  F  Y  P  C  E  R  H  C  C  A  T  Q  K  Q  *  W  *  C  *  R  S  S  T  H  S  S  I  S  I  I  R  W  G  H  T  C  L  G  C  S  H  D  *  Q  R  *  A  K  S  T  G  *  G  Q  Y  K  I  Q  A  D  L  S  G  W  I  I  H  Q  I :   Y  E  K  T  T  G  W  K  Y  Y  F  K  W  T  T  A  R  R  R  *  R  I  I  V  L  *  F  G  N  D  N  H  I  V  Y  L  P  Y  F  S  F  R  F  P  L  P  L  K  L  L  E  S  Y  Q  F  C  *  L  K  V  D  H  S  K  S  I  L  *  G  V  C  I  I  *  L  M  N  M  S  S  Y   </first_frame>
            <second_frame>  *  G  L  T  *  T  P  F  F  L  S  L  S  S  L  R  K  A  M  S  L  I  A  G  S  Y  E  R  F  I  W  G  F  K  L  R  S  L  K  N  D  Q  N  Y  E  L  T  P  L  F  S  F  P  S  H  L  S  P  I  K  C  T  A  V  A  G  S  A  A  V  S  G  G  A  D  D  T  I  K  I  Y  D  L  S  T  C  S  E  I  G  S  L  H  H  S  A  T  V  T  S  L  S  F  F  T  P  S  S  F  S  F  P  R  N  L  I  A  A  S  E  D  G  S  V  S  I  Y  D  A  D  P  F  V  H  L  K  T  V  K  V  H  R  K  A  V  N  S  I  C  I  H  P  S  G  R  L  A  L  T  V  G  R  D  E  C  M  A  M  V  N  L  V  R  G  R  R  S  F  Y  C  R  L  G  K  E  A  S  L  V  N  F  S  D  G  G  E  K  F  F  M  V  M  D  D  K  I  S  V  H  E  S  E  D  A  K  A  I  L  E  L  D  S  K  K  R  V  L  C  A  T  Y  G  M  :  H  G  I  L  F  T  G  G  E  D  R  S  I  K  A  W  D  I  T  S  G  K  L  A  Y  S  I  E  D  A  H  S  T  R  V  K  G  I  V  V  L  H  K  N  S  D  G  D  A  E  D  H  Q  H  I  V  A  S  A  S  S  D  G  V  I  R  V  W  D  V  R  M  T  N  K  D  K  P  N  P  L  A  E  V  N  T  K  S  R  L  T  C  L  A  G  S  S  I  K   : S  M  K  R  P  Q  V  G  N  T  T  S  N  G  Q  Q  L  D  A  G  E  E  S  *  C  C  N  L  V  M  T  I  T  *  C  I  C  H  I  F  P  L  D  S  P  S  P  *  S  C  W  N  H  I  N  F  V  S  *  K  L  I  T  R  N  L  F  C  K  A  C  V  L  F  N  *  *  I  *  A  V  I  </second_frame>
            <third_frame>   R  V  *  H  K  P  L  F  F  S  L  S  H  R  C  V  K  L  *  V  *  L  Q  V  H  T  R  D  S  F  G  D  S  S  *  D  P  S  K  T  I  R  I  T  N  *  P  L  Y  S  P  S  L  H  I  S  H  Q  L  N  A  P  P  S  P  V  L  P  L  Y  P  A  A  P  M  T  L  S  K  S  M  T  F  L  L  A  Q  K  L  G  H  Y  T  T  P  P  P  L  L  H  F  P  F  L  P  L  L  H  S  P  S  L  V  T  L  L  P  R  L  K  M  V  R  F  P  Y  M  M  L  I  L  L  F  I  S  R  R  L  K  C  I  V  R  Q  *  I  L  Y  A  F  I  R  R  G  G  W  H  *  L  L  E  E  M  N  V  W  L  W  L  I  W  L  E  E  G  E  V  F  I  V  G  W  E  K  K  L  L  *  L  I  L  V  M  V  V  K  S  F  L  W  L  W  M  I  R  F  L  Y  M  N  L  K  M  P  K  L  F  *  S  L  T  V  R  R  G  C  F  V  P  L  M  G  C :   M  V  F  C  L  L  G  E  R  T  G  V  L  K  L  G  T  L  L  V  E  N  L  H  I  A  L  K  M  H  I  L  P  V  *  K  A  L  L  C  Y  T  K  T  V  M  V  M  L  K  I  I  N  T  *  *  H  Q  H  H  Q  M  G  S  Y  V  F  G  M  F  A  *  L  T  K  I  S  Q  I  H  W  L  R  S  I  Q  N  P  G  *  L  V  W  L  D  H  P  S  N  :  L  *  K  D  H  R  L  E  I  L  L  Q  M  D  N  S  S  T  Q  V  K  N  H  S  A  V  I  W  *  *  Q  S  H  S  V  S  A  I  F  F  L  *  I  P  P  P  P  E  V  V  G  I  I  S  I  L  L  V  K  S  *  S  L  E  I  Y  F  V  R  R  V  Y  Y  L  I  N  E  Y  E  Q  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52775" stop="53458"/>
                    <exon start="54692" stop="54989"/>
                    <exon start="55584" stop="55654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFFLSLSSLRKAMSLIAGSYERFIWGFKLRSLKNDQNYELTPLFSFPSHLSPIKCTAVAGSAAVSGGADDTIKIYDLSTCSEIGSLHHSATVTSLSFFTPSSFSFPRNLIAASEDGSVSIYDADPFVHLKTVKVHRKAVNSICIHPSGRLALTVGRDECMAMVNLVRGRRSFYCRLGKEASLVNFSDGGEKFFMVMDDKISVHESEDAKAILELDSKKRVLCATYGMHGILFTGGEDRSIKAWDITSGKLAYSIEDAHSTRVKGIVVLHKNSDGDAEDHQHIVASASSDGVIRVWDVRMTNKDKPNPLAEVNTKSRLTCLAGSSIKSMKRPQVGNTTSNGQQLDAGEES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="53286" PGL_stop="52777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53286" e_stop="52777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="53286" e_stop="52777" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53286" stop="52777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTTCCTCTAACCAAATTAACCATAGCCATACATTCATCTCTTCCAACAGTCAATGCCAACCTCCCCGACGGATGAATGCATATAGAATTCACTGCCTTACGATGCACTTTAACCGTCTTGAGATGAACAAAAGGATCAGCATCATATATGGAAACCGAACCATCTTCAGACGCGGCAATAAGGTTACGAGGGAAGGAGAATGAAGAAGGGGTAAAAAAGGAAAGTGAAGTAACGGTGGCGGAGTGGTGTAGTGACCCAATTTCTGAGCAAGTAGAAAGGTCATAGATTTTGATAGTGTCATCGGCGCCGCCGGATACAGCGGCAGAACCGGCGACGGCGGTGCATTTAATTGGTGAGAGATGTGAAGGGAAGGAGAATAGAGGGGTTAGTTCGTAATTCTGATCGTTTTTGAGGGATCTCAACTTGAATCCCCAAATGAATCTCTCGTATGAACCTGCAATTAAACTCATAGCTTTACGCAGCGATGAGAGAGAGAGAAAAAAAGGG</gDNA_template>
            <first_frame> L  L  P  L  T  K  L  T  I  A  I  H  S  S  L  P  T  V  N  A  N  L  P  D  G  *  M  H  I  E  F  T  A  L  R  C  T  L  T  V  L  R  *  T  K  G  S  A  S  Y  M  E  T  E  P  S  S  D  A  A  I  R  L  R  G  K  E  N  E  E  G  V  K  K  E  S  E  V  T  V  A  E  W  C  S  D  P  I  S  E  Q  V  E  R  S  *  I  L  I  V  S  S  A  P  P  D  T  A  A  E  P  A  T  A  V  H  L  I  G  E  R  C  E  G  K  E  N  R  G  V  S  S  *  F  *  S  F  L  R  D  L  N  L  N  P  Q  M  N  L  S  Y  E  P  A  I  K  L  I  A  L  R  S  D  E  R  E  R  K  K  G </first_frame>
            <second_frame>  S  F  L  *  P  N  *  P  *  P  Y  I  H  L  F  Q  Q  S  M  P  T  S  P  T  D  E  C  I  *  N  S  L  P  Y  D  A  L  *  P  S  *  D  E  Q  K  D  Q  H  H  I  W  K  P  N  H  L  Q  T  R  Q  *  G  Y  E  G  R  R  M  K  K  G  *  K  R  K  V  K  *  R  W  R  S  G  V  V  T  Q  F  L  S  K  *  K  G  H  R  F  *  *  C  H  R  R  R  R  I  Q  R  Q  N  R  R  R  R  C  I  *  L  V  R  D  V  K  G  R  R  I  E  G  L  V  R  N  S  D  R  F  *  G  I  S  T  *  I  P  K  *  I  S  R  M  N  L  Q  L  N  S  *  L  Y  A  A  M  R  E  R  E  K  K   </second_frame>
            <third_frame>   P  S  S  N  Q  I  N  H  S  H  T  F  I  S  S  N  S  Q  C  Q  P  P  R  R  M  N  A  Y  R  I  H  C  L  T  M  H  F  N  R  L  E  M  N  K  R  I  S  I  I  Y  G  N  R  T  I  F  R  R  G  N  K  V  T  R  E  G  E  *  R  R  G  K  K  G  K  *  S  N  G  G  G  V  V  *  *  P  N  F  *  A  S  R  K  V  I  D  F  D  S  V  I  G  A  A  G  Y  S  G  R  T  G  D  G  G  A  F  N  W  *  E  M  *  R  E  G  E  *  R  G  *  F  V  I  L  I  V  F  E  G  S  Q  L  E  S  P  N  E  S  L  V  *  T  C  N  *  T  H  S  F  T  Q  R  *  E  R  E  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53284" stop="53081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSSNQINHSHTFISSNSQCQPPRRMNAYRIHCLTMHFNRLEMNKRISIIYGNRTIFRRGNKVTREGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="57532" PGL_stop="64555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57532" e_stop="57782"/>
            <exon e_start="59005" e_stop="59070"/>
            <exon e_start="59445" e_stop="59555"/>
            <exon e_start="59658" e_stop="59720"/>
            <exon e_start="60585" e_stop="60618"/>
            <exon e_start="61043" e_stop="61165"/>
            <exon e_start="62021" e_stop="62083"/>
            <exon e_start="62171" e_stop="62264"/>
            <exon e_start="62520" e_stop="62565"/>
            <exon e_start="62822" e_stop="62889"/>
            <exon e_start="63132" e_stop="63180"/>
            <exon e_start="63374" e_stop="63439"/>
            <exon e_start="63536" e_stop="63847"/>
            <exon e_start="64519" e_stop="64555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.224" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.615" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.595"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="57532" e_stop="57782" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59005" e_stop="59070" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59445" e_stop="59555" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.977">
            <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59658" e_stop="59720" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60585" e_stop="60618" e_length="34"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.966">
            <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61043" e_stop="61165" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.909" acc_prob="0.876">
            <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62021" e_stop="62083" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.224">
            <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62171" e_stop="62264" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.615">
            <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62520" e_stop="62565" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="62822" e_stop="62889" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63132" e_stop="63180" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="63374" e_stop="63439" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.936" acc_prob="0.877">
            <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="63536" e_stop="63847" e_length="312"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63848" i_stop="64518" i_length="671"/>
          </intron>
          <exon e_serial="14" e_score="0.595">
            <gDNA_exon_boundary e_start="64519" e_stop="64555" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57532" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57545" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57574" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57574" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57575" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57605" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57605" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57611" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59459" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59517" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61139" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62252" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63847"/>
              <exon start="64519" stop="64555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244376" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTTTCTTTCTTCTTGTTTTTCTCATTCAAACTACTATAGTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT : GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA : TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG : GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG : GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG : CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG : GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG : ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG : AACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTG : GTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC : AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGG : ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAG : CAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTC : AAAATTTTAAATTCAAAAAACGATTCAACAATACTAA</gDNA_template>
            <first_frame> G  I  F  F  L  L  V  F  L  I  Q  T  T  I  V  F  K  T  L  P  F  S  P  F  S  A  *  P  F  P  P  I  F  C  Y  S  D  L  K  F  Y  T  L  L  S  L  C  K  F  L  V  L  W  Q  N  S  E  S  S  K  V  F  L  K  W  P  A  V  M  I  I  T  L  L  K  K  K  K  K  L  T  L  L  L :   M  A  E  A  E  G  N  L  Q  G  N  Q  N  L  V  E  V  H  F  I  P  H :   P  G  V  C  L  Q  Q  Q  T  P  D  F  H  P  F  R  Q  N  Q  L  I  S  M  T  A  M  R  Q  L  I  F  L  L  T  V  L  R :   T  *  K  R  K  K  K  N  Y  S  L  R  R  M  N  C  G  G  G  N  R :   I  *  K  G  E  K  M  L  L  H  E  :  P  A  L  F  S  R  R  K  I  G  L  R  S  S  Q  S  S  I  M  I  L  Q  M  K  Y  Q  F  I  F  K  S  Y  N  M  L  H  L  Q  R  S  W  :  D  L  L  H  A  Y  Y  G  T  L  *  L  Q  L  Q  H  G  L  K  K  E  :  M  *  R  S  G  S  F  L  S  Y  T  S  Y  Q  V  F  L  E  P  T  S  C  G  I  V  L  C  I  V  R  L   : E  L  R  V  P  *  S  L  R  G  F  S  C  F  T  W :   F  T  L  Y  F  A  S  L  L  L  L  L  L  Q  *  S  S  E  E  N  P  L   : Q  A  S  C  L  R  W  I  S  S  A  K  M  Y  L  L  G :   F  S  T  S  S  V  L  G  Y  F  V  S  S  H  C  *  A  F  G  L  F  S :   K  Y  T  C  I  S  E  E  V  V  K  P  R  R  *  S  K  K  L  L  E  V  P  L  E  Q  Q  Y  N  *  K  K  C  S  W  *  K  A  V  K  Y  A  F  G  D  Y  M  F  *  L  V  Q  F  D  I  Y  A  A  C  F  A  Y  A  F  G  D  Y  A  F  I  Y  D  Y  L  D  Q  S  A  V  R  K  K  I  *  N  S  F  C  L  I  G  D  T  I  Y  I  M  F  I  L  L  F  L  S :   K  F  *  I  Q  K  T  I  Q  Q  Y  * </first_frame>
            <second_frame>  E  F  S  F  F  L  F  F  S  F  K  L  L  *  F  S  R  L  C  L  F  P  P  S  L  L  S  L  F  H  L  F  F  A  I  Q  I  S  S  F  T  L  C  F  P  S  V  N  F  L  F  C  G  K  I  Q  K  V  A  K  F  S  *  N  G  R  P  L  *  S  *  P  F  *  R  R  R  R  S  *  P  F  C   : *  W  R  R  Q  R  E  I  F  R  A  I  K  I  *  W  R  C  I  L  Y  H   : I  R  E  C  A  S  S  N  K  L  Q  T  F  T  P  S  A  R  T  S  *  F  L  *  P  Q  C  V  N  *  Y  S  S  *  Q  C  F   : G  P  E  K  E  R  K  R  I  T  V  *  G  E  *  I  A  E  E  G  T   : G  S  K  K  E  R  R  C  C  C  T  S :   R  H  C  S  R  G  E  K  L  A  S  V  L  P  N  H  P  S  *  Y  C  K  *  N  T  N  S  S  S  K  A  T  I  C  C  I  Y  N  V  L  G :   T  Y  C  M  P  I  M  E  H  C  S  Y  N  Y  S  M  D  *  R  R  R :   C  E  D  L  V  P  F  Y  H  I  L  H  I  R  C  S  W  S  L  L  H  V  V  S  S  S  V  S  C  V  *  :  N  *  G  C  H  E  V  C  V  V  F  L  V  L  L   : G  S  H  C  I  L  R  L  C  C  C  C  S  S  S  S  L  Q  R  K  I  P  Y  :  R  H  P  A  C  G  G  S  H  R  Q  K  C  T  C  W   : D  F  L  L  H  R  F  W  V  I  L  S  R  V  I  A  E  H  L  G  Y  S   : A  S  I  H  V  F  P  R  K  W  *  S  R  A  D  E  A  R  S  C  *  R  C  P  *  S  S  N  I  I  E  R  N  V  L  G  R  R  L  L  N  M  L  L  V  I  I  C  F  S  *  F  N  L  T  Y  M  L  L  V  L  H  M  L  L  V  I  M  L  L  F  M  T  T  *  T  K  V  L  L  G  K  R  F  R  I  P  F  V  *  L  E  T  Q  S  I  L  C  L  Y  C  Y  F  C   : Q  N  F  K  F  K  K  R  F  N  N  T   </second_frame>
            <third_frame>   N  F  L  S  S  C  F  S  H  S  N  Y  Y  S  F  Q  D  S  A  F  F  P  L  L  C  L  A  F  S  T  Y  F  L  L  F  R  S  Q  V  L  H  F  A  F  P  L  *  I  S  C  F  V  A  K  F  R  K  *  Q  S  F  L  E  M  A  G  R  Y  D  H  N  P  F  E  E  E  E  E  V  N  P  F  A  :  D  G  G  G  R  G  K  S  S  G  Q  S  K  F  S  G  G  A  F  Y  T  T  :  S  G  S  V  P  P  A  T  N  S  R  L  S  P  L  P  P  E  P  A  D  F  Y  D  R  N  A  S  I  D  I  P  L  D  S  A  S  :  D  L  K  K  K  E  K  E  L  Q  S  K  E  N  E  L  R  R  R  E  Q  :  D  L  K  R  R  E  D  A  A  A  R   : A  G  I  V  L  E  E  K  N  W  P  P  F  F  P  I  I  H  H  D  I  A  N  E  I  P  I  H  L  Q  K  L  Q  Y  V  A  F  T  T  F  L   : G  L  I  A  C  L  L  W  N  I  V  A  T  T  T  A  W  I  K  E  G   : D  V  K  I  W  F  L  S  I  I  Y  F  I  S  G  V  P  G  A  Y  F  M  W  Y  R  P  L  Y  R  A  F  R :   T  E  G  A  M  K  F  A  W  F  F  L  F  Y  L  :  V  H  I  V  F  C  V  F  A  A  V  A  P  P  V  V  F  R  G  K  S  L  T :   G  I  L  P  A  V  D  L  I  G  K  N  V  L  V  G  :  I  F  Y  F  I  G  F  G  L  F  C  L  E  S  L  L  S  I  W  V  I  Q  :  Q  V  Y  M  Y  F  R  G  S  G  K  A  A  Q  M  K  Q  E  A  A  R  G  A  L  R  A  A  I  *  L  K  E  M  F  L  V  E  G  C  *  I  C  F  W  *  L  Y  V  L  V  S  S  I  *  H  I  C  C  L  F  C  I  C  F  W  *  L  C  F  Y  L  *  L  L  R  P  K  C  C  *  E  K  D  L  E  F  L  L  F  N  W  R  H  N  L  Y  Y  V  Y  I  A  I  F  V  :  K  I  L  N  S  K  N  D  S  T  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57708" stop="57782"/>
                    <exon start="59005" stop="59070"/>
                    <exon start="59445" stop="59555"/>
                    <exon start="59658" stop="59720"/>
                    <exon start="60585" stop="60618"/>
                    <exon start="61043" stop="61165"/>
                    <exon start="62021" stop="62083"/>
                    <exon start="62171" stop="62264"/>
                    <exon start="62520" stop="62565"/>
                    <exon start="62822" stop="62889"/>
                    <exon start="63132" stop="63180"/>
                    <exon start="63374" stop="63439"/>
                    <exon start="63536" stop="63622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFLEMAGRYDHNPFEEEEEVNPFADGGGRGKSSGQSKFSGGAFYTTSGSVPPATNSRLSPLPPEPADFYDRNASIDIPLDSASDLKKKEKELQSKENELRRREQDLKRREDAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQKLQYVAFTTFLGLIACLLWNIVATTTAWIKEGDVKIWFLSIIYFISGVPGAYFMWYRPLYRAFRTEGAMKFAWFFLFYLVHIVFCVFAAVAPPVVFRGKSLTGILPAVDLIGKNVLVGIFYFIGFGLFCLESLLSIWVIQQVYMYFRGSGKAAQMKQEAARGALRAAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57532" e_stop="57782"/>
            <exon e_start="59005" e_stop="59070"/>
            <exon e_start="59445" e_stop="59555"/>
            <exon e_start="59658" e_stop="59720"/>
            <exon e_start="60585" e_stop="60618"/>
            <exon e_start="61043" e_stop="61165"/>
            <exon e_start="62021" e_stop="62083"/>
            <exon e_start="62171" e_stop="62264"/>
            <exon e_start="62520" e_stop="62565"/>
            <exon e_start="62822" e_stop="62889"/>
            <exon e_start="63132" e_stop="63180"/>
            <exon e_start="63374" e_stop="63439"/>
            <exon e_start="63536" e_stop="63908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.224" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.615" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="57532" e_stop="57782" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57783" i_stop="59004" i_length="1222"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59005" e_stop="59070" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="59071" i_stop="59444" i_length="374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59445" e_stop="59555" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.977">
            <gDNA_intron_boundary i_start="59556" i_stop="59657" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59658" e_stop="59720" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.812" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59721" i_stop="60584" i_length="864"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60585" e_stop="60618" e_length="34"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.966">
            <gDNA_intron_boundary i_start="60619" i_stop="61042" i_length="424"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61043" e_stop="61165" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.909" acc_prob="0.876">
            <gDNA_intron_boundary i_start="61166" i_stop="62020" i_length="855"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62021" e_stop="62083" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.224">
            <gDNA_intron_boundary i_start="62084" i_stop="62170" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62171" e_stop="62264" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.972" acc_prob="0.615">
            <gDNA_intron_boundary i_start="62265" i_stop="62519" i_length="255"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62520" e_stop="62565" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="62566" i_stop="62821" i_length="256"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="62822" e_stop="62889" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62890" i_stop="63131" i_length="242"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63132" e_stop="63180" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63181" i_stop="63373" i_length="193"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="63374" e_stop="63439" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.936" acc_prob="0.877">
            <gDNA_intron_boundary i_start="63440" i_stop="63535" i_length="96"/>
          </intron>
          <exon e_serial="13" e_score="0.984">
            <gDNA_exon_boundary e_start="63536" e_stop="63908" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57532" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57545" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57574" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57574" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57575" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57605" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57605" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57611" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57651" stop="57782"/>
              <exon start="59005" stop="59070"/>
              <exon start="59445" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59459" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59517" stop="59555"/>
              <exon start="59658" stop="59720"/>
              <exon start="60585" stop="60618"/>
              <exon start="61043" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61139" stop="61165"/>
              <exon start="62021" stop="62083"/>
              <exon start="62171" stop="62264"/>
              <exon start="62520" stop="62565"/>
              <exon start="62822" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62832" stop="62889"/>
              <exon start="63132" stop="63180"/>
              <exon start="63374" stop="63439"/>
              <exon start="63536" stop="63908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATTTTCTTTCTTCTTGTTTTTCTCATTCAAACTACTATAGTTTTCAAGACTCTGCCTTTTTCCCCCTTCTCTGCTTAGCCTTTTCCACCTATTTTTTGCTATTCAGATCTCAAGTTTTACACTTTGCTTTCCCTCTGTAAATTTCTTGTTTTGTGGCAAAATTCAGAAAGTAGCAAAGTTTTCTTGAAATGGCCGGCCGTTATGATCATAACCCTTTTGAAGAAGAAGAAGAAGTTAACCCTTTTGCT : GATGGCGGAGGCAGAGGGAAATCTTCAGGGCAATCAAAATTTAGTGGAGGTGCATTTTATACCACA : TCCGGGAGTGTGCCTCCAGCAACAAACTCCAGACTTTCACCCCTTCCGCCAGAACCAGCTGATTTCTATGACCGCAATGCGTCAATTGATATTCCTCTTGACAGTGCTTCG : GACCTGAAAAAGAAAGAAAAAGAATTACAGTCTAAGGAGAATGAATTGCGGAGGAGGGAACAG : GATCTAAAAAGGAGAGAAGATGCTGCTGCACGAG : CCGGCATTGTTCTCGAGGAGAAAAATTGGCCTCCGTTCTTCCCAATCATCCATCATGATATTGCAAATGAAATACCAATTCATCTTCAAAAGCTACAATATGTTGCATTTACAACGTTCTTGG : GACTTATTGCATGCCTATTATGGAACATTGTAGCTACAACTACAGCATGGATTAAAGAAGGAG : ATGTGAAGATCTGGTTCCTTTCTATCATATACTTCATATCAGGTGTTCCTGGAGCCTACTTCATGTGGTATCGTCCTCTGTATCGTGCGTTTAG : AACTGAGGGTGCCATGAAGTTTGCGTGGTTTTTCTTGTTTTACTTG : GTTCACATTGTATTTTGCGTCTTTGCTGCTGTTGCTCCTCCAGTAGTCTTCAGAGGAAAATCCCTTAC : AGGCATCCTGCCTGCGGTGGATCTCATCGGCAAAAATGTACTTGTTGGG : ATTTTCTACTTCATCGGTTTTGGGTTATTTTGTCTCGAGTCATTGCTGAGCATTTGGGTTATTCAG : CAAGTATACATGTATTTCCGAGGAAGTGGTAAAGCCGCGCAGATGAAGCAAGAAGCTGCTAGAGGTGCCCTTAGAGCAGCAATATAATTGAAAGAAATGTTCTTGGTAGAAGGCTGTTAAATATGCTTTTGGTGATTATATGTTTTAGTTAGTTCAATTTGACATATATGCTGCTTGTTTTGCATATGCTTTTGGTGATTATGCTTTTATTTATGACTACTTAGACCAAAGTGCTGTTAGGAAAAAGATTTAGAATTCCTTTTGTTTAATTGGAGACACAATCTATATTATGTTTATATTGCTATTTTTGTCATACTCATTTCTTGTAATATGTTTCTTCTGAAAATCAAACATTCTTCTCCAATAACATCTT</gDNA_template>
            <first_frame> G  I  F  F  L  L  V  F  L  I  Q  T  T  I  V  F  K  T  L  P  F  S  P  F  S  A  *  P  F  P  P  I  F  C  Y  S  D  L  K  F  Y  T  L  L  S  L  C  K  F  L  V  L  W  Q  N  S  E  S  S  K  V  F  L  K  W  P  A  V  M  I  I  T  L  L  K  K  K  K  K  L  T  L  L  L :   M  A  E  A  E  G  N  L  Q  G  N  Q  N  L  V  E  V  H  F  I  P  H :   P  G  V  C  L  Q  Q  Q  T  P  D  F  H  P  F  R  Q  N  Q  L  I  S  M  T  A  M  R  Q  L  I  F  L  L  T  V  L  R :   T  *  K  R  K  K  K  N  Y  S  L  R  R  M  N  C  G  G  G  N  R :   I  *  K  G  E  K  M  L  L  H  E  :  P  A  L  F  S  R  R  K  I  G  L  R  S  S  Q  S  S  I  M  I  L  Q  M  K  Y  Q  F  I  F  K  S  Y  N  M  L  H  L  Q  R  S  W  :  D  L  L  H  A  Y  Y  G  T  L  *  L  Q  L  Q  H  G  L  K  K  E  :  M  *  R  S  G  S  F  L  S  Y  T  S  Y  Q  V  F  L  E  P  T  S  C  G  I  V  L  C  I  V  R  L   : E  L  R  V  P  *  S  L  R  G  F  S  C  F  T  W :   F  T  L  Y  F  A  S  L  L  L  L  L  L  Q  *  S  S  E  E  N  P  L   : Q  A  S  C  L  R  W  I  S  S  A  K  M  Y  L  L  G :   F  S  T  S  S  V  L  G  Y  F  V  S  S  H  C  *  A  F  G  L  F  S :   K  Y  T  C  I  S  E  E  V  V  K  P  R  R  *  S  K  K  L  L  E  V  P  L  E  Q  Q  Y  N  *  K  K  C  S  W  *  K  A  V  K  Y  A  F  G  D  Y  M  F  *  L  V  Q  F  D  I  Y  A  A  C  F  A  Y  A  F  G  D  Y  A  F  I  Y  D  Y  L  D  Q  S  A  V  R  K  K  I  *  N  S  F  C  L  I  G  D  T  I  Y  I  M  F  I  L  L  F  L  S  Y  S  F  L  V  I  C  F  F  *  K  S  N  I  L  L  Q  *  H  L </first_frame>
            <second_frame>  E  F  S  F  F  L  F  F  S  F  K  L  L  *  F  S  R  L  C  L  F  P  P  S  L  L  S  L  F  H  L  F  F  A  I  Q  I  S  S  F  T  L  C  F  P  S  V  N  F  L  F  C  G  K  I  Q  K  V  A  K  F  S  *  N  G  R  P  L  *  S  *  P  F  *  R  R  R  R  S  *  P  F  C   : *  W  R  R  Q  R  E  I  F  R  A  I  K  I  *  W  R  C  I  L  Y  H   : I  R  E  C  A  S  S  N  K  L  Q  T  F  T  P  S  A  R  T  S  *  F  L  *  P  Q  C  V  N  *  Y  S  S  *  Q  C  F   : G  P  E  K  E  R  K  R  I  T  V  *  G  E  *  I  A  E  E  G  T   : G  S  K  K  E  R  R  C  C  C  T  S :   R  H  C  S  R  G  E  K  L  A  S  V  L  P  N  H  P  S  *  Y  C  K  *  N  T  N  S  S  S  K  A  T  I  C  C  I  Y  N  V  L  G :   T  Y  C  M  P  I  M  E  H  C  S  Y  N  Y  S  M  D  *  R  R  R :   C  E  D  L  V  P  F  Y  H  I  L  H  I  R  C  S  W  S  L  L  H  V  V  S  S  S  V  S  C  V  *  :  N  *  G  C  H  E  V  C  V  V  F  L  V  L  L   : G  S  H  C  I  L  R  L  C  C  C  C  S  S  S  S  L  Q  R  K  I  P  Y  :  R  H  P  A  C  G  G  S  H  R  Q  K  C  T  C  W   : D  F  L  L  H  R  F  W  V  I  L  S  R  V  I  A  E  H  L  G  Y  S   : A  S  I  H  V  F  P  R  K  W  *  S  R  A  D  E  A  R  S  C  *  R  C  P  *  S  S  N  I  I  E  R  N  V  L  G  R  R  L  L  N  M  L  L  V  I  I  C  F  S  *  F  N  L  T  Y  M  L  L  V  L  H  M  L  L  V  I  M  L  L  F  M  T  T  *  T  K  V  L  L  G  K  R  F  R  I  P  F  V  *  L  E  T  Q  S  I  L  C  L  Y  C  Y  F  C  H  T  H  F  L  *  Y  V  S  S  E  N  Q  T  F  F  S  N  N  I   </second_frame>
            <third_frame>   N  F  L  S  S  C  F  S  H  S  N  Y  Y  S  F  Q  D  S  A  F  F  P  L  L  C  L  A  F  S  T  Y  F  L  L  F  R  S  Q  V  L  H  F  A  F  P  L  *  I  S  C  F  V  A  K  F  R  K  *  Q  S  F  L  E  M  A  G  R  Y  D  H  N  P  F  E  E  E  E  E  V  N  P  F  A  :  D  G  G  G  R  G  K  S  S  G  Q  S  K  F  S  G  G  A  F  Y  T  T  :  S  G  S  V  P  P  A  T  N  S  R  L  S  P  L  P  P  E  P  A  D  F  Y  D  R  N  A  S  I  D  I  P  L  D  S  A  S  :  D  L  K  K  K  E  K  E  L  Q  S  K  E  N  E  L  R  R  R  E  Q  :  D  L  K  R  R  E  D  A  A  A  R   : A  G  I  V  L  E  E  K  N  W  P  P  F  F  P  I  I  H  H  D  I  A  N  E  I  P  I  H  L  Q  K  L  Q  Y  V  A  F  T  T  F  L   : G  L  I  A  C  L  L  W  N  I  V  A  T  T  T  A  W  I  K  E  G   : D  V  K  I  W  F  L  S  I  I  Y  F  I  S  G  V  P  G  A  Y  F  M  W  Y  R  P  L  Y  R  A  F  R :   T  E  G  A  M  K  F  A  W  F  F  L  F  Y  L  :  V  H  I  V  F  C  V  F  A  A  V  A  P  P  V  V  F  R  G  K  S  L  T :   G  I  L  P  A  V  D  L  I  G  K  N  V  L  V  G  :  I  F  Y  F  I  G  F  G  L  F  C  L  E  S  L  L  S  I  W  V  I  Q  :  Q  V  Y  M  Y  F  R  G  S  G  K  A  A  Q  M  K  Q  E  A  A  R  G  A  L  R  A  A  I  *  L  K  E  M  F  L  V  E  G  C  *  I  C  F  W  *  L  Y  V  L  V  S  S  I  *  H  I  C  C  L  F  C  I  C  F  W  *  L  C  F  Y  L  *  L  L  R  P  K  C  C  *  E  K  D  L  E  F  L  L  F  N  W  R  H  N  L  Y  Y  V  Y  I  A  I  F  V  I  L  I  S  C  N  M  F  L  L  K  I  K  H  S  S  P  I  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57708" stop="57782"/>
                    <exon start="59005" stop="59070"/>
                    <exon start="59445" stop="59555"/>
                    <exon start="59658" stop="59720"/>
                    <exon start="60585" stop="60618"/>
                    <exon start="61043" stop="61165"/>
                    <exon start="62021" stop="62083"/>
                    <exon start="62171" stop="62264"/>
                    <exon start="62520" stop="62565"/>
                    <exon start="62822" stop="62889"/>
                    <exon start="63132" stop="63180"/>
                    <exon start="63374" stop="63439"/>
                    <exon start="63536" stop="63622"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSFLEMAGRYDHNPFEEEEEVNPFADGGGRGKSSGQSKFSGGAFYTTSGSVPPATNSRLSPLPPEPADFYDRNASIDIPLDSASDLKKKEKELQSKENELRRREQDLKRREDAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQKLQYVAFTTFLGLIACLLWNIVATTTAWIKEGDVKIWFLSIIYFISGVPGAYFMWYRPLYRAFRTEGAMKFAWFFLFYLVHIVFCVFAAVAPPVVFRGKSLTGILPAVDLIGKNVLVGIFYFIGFGLFCLESLLSIWVIQQVYMYFRGSGKAAQMKQEAARGALRAAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="65065" PGL_stop="64606"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65065" e_stop="64606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="65065" e_stop="64606" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65065" stop="64606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65019" stop="64606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64936" stop="64613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGGTTTTGGTGGGATATTTGGGCCTGGTGGAGGGTTTAATATTCCTGGGCTTGGTGGTGGAGTATTTGGTGGTGGATTTGGAGGCCCAAAAGGTGGATATGGAAAAGGTGGAGTCATAAGGTCTAGTGTTGTGTGTAAAGTAAAAGGCCCATGTTTTGGTATGAAATTAATATGTCCAGCAAAATGTTATAAATCATATTCTAGTGCTGGAAAAGGTTATGGTTTTGGTGGTGGATCTGGTGGATGTACTATGGATTGCAAGAAGAAATGTCTTGCTTATTGTTAACCCCACCCCACCCAAAAAAAAAATAAAATATACCTAAGTAAGTTATTTGTTATATTTATATTACTTATAATATGTGTTGTTTGGTTGTATTTGTTTTGTCATGTGGAACAATATATTATGTTAGCTAAGTTCTACATTTTTATGATACAAGTAATAGAATTCATGGTGAAAA</gDNA_template>
            <first_frame> V  G  F  G  G  I  F  G  P  G  G  G  F  N  I  P  G  L  G  G  G  V  F  G  G  G  F  G  G  P  K  G  G  Y  G  K  G  G  V  I  R  S  S  V  V  C  K  V  K  G  P  C  F  G  M  K  L  I  C  P  A  K  C  Y  K  S  Y  S  S  A  G  K  G  Y  G  F  G  G  G  S  G  G  C  T  M  D  C  K  K  K  C  L  A  Y  C  *  P  H  P  T  Q  K  K  N  K  I  Y  L  S  K  L  F  V  I  F  I  L  L  I  I  C  V  V  W  L  Y  L  F  C  H  V  E  Q  Y  I  M  L  A  K  F  Y  I  F  M  I  Q  V  I  E  F  M  V  K  </first_frame>
            <second_frame>  W  V  L  V  G  Y  L  G  L  V  E  G  L  I  F  L  G  L  V  V  E  Y  L  V  V  D  L  E  A  Q  K  V  D  M  E  K  V  E  S  *  G  L  V  L  C  V  K  *  K  A  H  V  L  V  *  N  *  Y  V  Q  Q  N  V  I  N  H  I  L  V  L  E  K  V  M  V  L  V  V  D  L  V  D  V  L  W  I  A  R  R  N  V  L  L  I  V  N  P  T  P  P  K  K  K  I  K  Y  T  *  V  S  Y  L  L  Y  L  Y  Y  L  *  Y  V  L  F  G  C  I  C  F  V  M  W  N  N  I  L  C  *  L  S  S  T  F  L  *  Y  K  *  *  N  S  W  *  K </second_frame>
            <third_frame>   G  F  W  W  D  I  W  A  W  W  R  V  *  Y  S  W  A  W  W  W  S  I  W  W  W  I  W  R  P  K  R  W  I  W  K  R  W  S  H  K  V  *  C  C  V  *  S  K  R  P  M  F  W  Y  E  I  N  M  S  S  K  M  L  *  I  I  F  *  C  W  K  R  L  W  F  W  W  W  I  W  W  M  Y  Y  G  L  Q  E  E  M  S  C  L  L  L  T  P  P  H  P  K  K  K  *  N  I  P  K  *  V  I  C  Y  I  Y  I  T  Y  N  M  C  C  L  V  V  F  V  L  S  C  G  T  I  Y  Y  V  S  *  V  L  H  F  Y  D  T  S  N  R  I  H  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65065" stop="64778"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFGGIFGPGGGFNIPGLGGGVFGGGFGGPKGGYGKGGVIRSSVVCKVKGPCFGMKLICPAKCYKSYSSAGKGYGFGGGSGGCTMDCKKKCLAYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="70246" PGL_stop="67592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70246" e_stop="69923"/>
            <exon e_start="68585" e_stop="67901"/>
            <exon e_start="67664" e_stop="67592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="0.997"/>
          <exon-intron don_prob="0.990" acc_prob="0.619" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70246" e_stop="69923" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="69922" i_stop="68586" i_length="1337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68585" e_stop="67901" e_length="685"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.619">
            <gDNA_intron_boundary i_start="67900" i_stop="67665" i_length="236"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="67664" e_stop="67592" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70246" stop="69923"/>
              <exon start="68585" stop="68384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70031" stop="69923"/>
              <exon start="68585" stop="68368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69966" stop="69923"/>
              <exon start="68585" stop="68198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68430" stop="67901"/>
              <exon start="67664" stop="67592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCACCAACTTTTAGGAAGAATGATATTTTCCTGAAAAAACAAATGTTGGGAACTATTTCTTTTTCTTCCAAGAAAGATTCTTACTTGGGTTTCACTGCCCAAACTAGTAGTCAAACAGATTTTGTGTCTGCAATGGATGAAGATTGTAAATTGGAATTGAAATCGAATTATATATCAGATGGGTATTGTAAAGAATTGGAGATTGCTGTAAGAGCTGTTCATATGGCTTGTTTGCTCTGCCAGAGGGTTCAAGAAAATTTGTTATCTGAAACCTCTGAACATGTTCATTCTAAGGAGGATGACTCTCCTGTCACAATTGCTG : ATTGGAGCGTCCAAGCAATTGTCAGCTGGGTACTGTCCGAGGCTTATGGCAGTAACGTCTCTATTGTTGCTGAAGAAGATGTAGAAGCTCTTTCCAAGGCTAGCGCAGCTGGTCTGTTAGAAGCAGTAGTAAGAACTGTGAATGAGTGTCTAGCCGATGCTCCTCGTTTTGGACTGAAAGGTCCTGGTACTGATCTGGATGCTAAAGCTGTTCTTGAGGCCATAAGTCGTTGCAGCTTAGCAGGTGCCAGAGGTAGCAAGTTTTGGGTACTGGATCCTGTTGATGGCACGTTGGGTTTCGTGCGTGGAGATCAATATGCCATTGCTTTGGCATTGATAGAAGACGGAGAACCTGTGCTTGGGGTTCTCGGATGTCCAAATTATCCTATGAAGAAGGAATGGCTTAGTTATCAAAATGGTTATAGGAGAATCTTATCTAGGTTGAGCTCCTCTACATCTGAATCTTCGGATAGAGGTTCTGTACTTTATGCAAGGAAAGGTGGCGGCAGGGCCTGGATGCAACCGTTACTGCGCGGAGAAAGTAAGTTTGTGTGGCCAAACGCTGCAAGGGAAATTAGAGTATCCTCCATCGATAACCCAGCACTAGCTACCTTTTGTGAACCAGTTGAGAAGGCAAATTCAAGCCATTCATTCACAGCAGGACTGGCTCATAGTGTTGGACTTCG : GAACCAGCCGTTACGTGTATACAGCATGGTAAAGTATGCAGCCATAGCTCGAGGAGATGCTGAGATATACATG</gDNA_template>
            <first_frame> C  H  Q  L  L  G  R  M  I  F  S  *  K  N  K  C  W  E  L  F  L  F  L  P  R  K  I  L  T  W  V  S  L  P  K  L  V  V  K  Q  I  L  C  L  Q  W  M  K  I  V  N  W  N  *  N  R  I  I  Y  Q  M  G  I  V  K  N  W  R  L  L  *  E  L  F  I  W  L  V  C  S  A  R  G  F  K  K  I  C  Y  L  K  P  L  N  M  F  I  L  R  R  M  T  L  L  S  Q  L  L  :  I  G  A  S  K  Q  L  S  A  G  Y  C  P  R  L  M  A  V  T  S  L  L  L  L  K  K  M  *  K  L  F  P  R  L  A  Q  L  V  C  *  K  Q  *  *  E  L  *  M  S  V  *  P  M  L  L  V  L  D  *  K  V  L  V  L  I  W  M  L  K  L  F  L  R  P  *  V  V  A  A  *  Q  V  P  E  V  A  S  F  G  Y  W  I  L  L  M  A  R  W  V  S  C  V  E  I  N  M  P  L  L  W  H  *  *  K  T  E  N  L  C  L  G  F  S  D  V  Q  I  I  L  *  R  R  N  G  L  V  I  K  M  V  I  G  E  S  Y  L  G  *  A  P  L  H  L  N  L  R  I  E  V  L  Y  F  M  Q  G  K  V  A  A  G  P  G  C  N  R  Y  C  A  E  K  V  S  L  C  G  Q  T  L  Q  G  K  L  E  Y  P  P  S  I  T  Q  H  *  L  P  F  V  N  Q  L  R  R  Q  I  Q  A  I  H  S  Q  Q  D  W  L  I  V  L  D  F   : G  T  S  R  Y  V  Y  T  A  W  *  S  M  Q  P  *  L  E  E  M  L  R  Y  T   </first_frame>
            <second_frame>  V  T  N  F  *  E  E  *  Y  F  P  E  K  T  N  V  G  N  Y  F  F  F  F  Q  E  R  F  L  L  G  F  H  C  P  N  *  *  S  N  R  F  C  V  C  N  G  *  R  L  *  I  G  I  E  I  E  L  Y  I  R  W  V  L  *  R  I  G  D  C  C  K  S  C  S  Y  G  L  F  A  L  P  E  G  S  R  K  F  V  I  *  N  L  *  T  C  S  F  *  G  G  *  L  S  C  H  N  C  * :   L  E  R  P  S  N  C  Q  L  G  T  V  R  G  L  W  Q  *  R  L  Y  C  C  *  R  R  C  R  S  S  F  Q  G  *  R  S  W  S  V  R  S  S  S  K  N  C  E  *  V  S  S  R  C  S  S  F  W  T  E  R  S  W  Y  *  S  G  C  *  S  C  S  *  G  H  K  S  L  Q  L  S  R  C  Q  R  *  Q  V  L  G  T  G  S  C  *  W  H  V  G  F  R  A  W  R  S  I  C  H  C  F  G  I  D  R  R  R  R  T  C  A  W  G  S  R  M  S  K  L  S  Y  E  E  G  M  A  *  L  S  K  W  L  *  E  N  L  I  *  V  E  L  L  Y  I  *  I  F  G  *  R  F  C  T  L  C  K  E  R  W  R  Q  G  L  D  A  T  V  T  A  R  R  K  *  V  C  V  A  K  R  C  K  G  N  *  S  I  L  H  R  *  P  S  T  S  Y  L  L  *  T  S  *  E  G  K  F  K  P  F  I  H  S  R  T  G  S  *  C  W  T  S  :  E  P  A  V  T  C  I  Q  H  G  K  V  C  S  H  S  S  R  R  C  *  D  I  H  </second_frame>
            <third_frame>   S  P  T  F  R  K  N  D  I  F  L  K  K  Q  M  L  G  T  I  S  F  S  S  K  K  D  S  Y  L  G  F  T  A  Q  T  S  S  Q  T  D  F  V  S  A  M  D  E  D  C  K  L  E  L  K  S  N  Y  I  S  D  G  Y  C  K  E  L  E  I  A  V  R  A  V  H  M  A  C  L  L  C  Q  R  V  Q  E  N  L  L  S  E  T  S  E  H  V  H  S  K  E  D  D  S  P  V  T  I  A   : D  W  S  V  Q  A  I  V  S  W  V  L  S  E  A  Y  G  S  N  V  S  I  V  A  E  E  D  V  E  A  L  S  K  A  S  A  A  G  L  L  E  A  V  V  R  T  V  N  E  C  L  A  D  A  P  R  F  G  L  K  G  P  G  T  D  L  D  A  K  A  V  L  E  A  I  S  R  C  S  L  A  G  A  R  G  S  K  F  W  V  L  D  P  V  D  G  T  L  G  F  V  R  G  D  Q  Y  A  I  A  L  A  L  I  E  D  G  E  P  V  L  G  V  L  G  C  P  N  Y  P  M  K  K  E  W  L  S  Y  Q  N  G  Y  R  R  I  L  S  R  L  S  S  S  T  S  E  S  S  D  R  G  S  V  L  Y  A  R  K  G  G  G  R  A  W  M  Q  P  L  L  R  G  E  S  K  F  V  W  P  N  A  A  R  E  I  R  V  S  S  I  D  N  P  A  L  A  T  F  C  E  P  V  E  K  A  N  S  S  H  S  F  T  A  G  L  A  H  S  V  G  L  R :   N  Q  P  L  R  V  Y  S  M  V  K  Y  A  A  I  A  R  G  D  A  E  I  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70244" stop="69923"/>
                    <exon start="68585" stop="67901"/>
                    <exon start="67664" stop="67592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1080</number_coding_nucleotides>
                  <number_encoded_amino_acids>360</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPTFRKNDIFLKKQMLGTISFSSKKDSYLGFTAQTSSQTDFVSAMDEDCKLELKSNYISDGYCKELEIAVRAVHMACLLCQRVQENLLSETSEHVHSKEDDSPVTIADWSVQAIVSWVLSEAYGSNVSIVAEEDVEALSKASAAGLLEAVVRTVNECLADAPRFGLKGPGTDLDAKAVLEAISRCSLAGARGSKFWVLDPVDGTLGFVRGDQYAIALALIEDGEPVLGVLGCPNYPMKKEWLSYQNGYRRILSRLSSSTSESSDRGSVLYARKGGGRAWMQPLLRGESKFVWPNAAREIRVSSIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRNQPLRVYSMVKYAAIARGDAEIYM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="77736" PGL_stop="75870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77736" e_stop="77570"/>
            <exon e_start="76715" e_stop="76609"/>
            <exon e_start="76530" e_stop="76387"/>
            <exon e_start="76294" e_stop="75870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.970"/>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="77736" e_stop="77570" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77569" i_stop="76716" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="76715" e_stop="76609" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76608" i_stop="76531" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76530" e_stop="76387" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76294" e_stop="75870" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77736" stop="77570"/>
              <exon start="76715" stop="76609"/>
              <exon start="76530" stop="76387"/>
              <exon start="76294" stop="76192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424986" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76678" stop="76609"/>
              <exon start="76530" stop="76387"/>
              <exon start="76294" stop="76102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76449" stop="76387"/>
              <exon start="76294" stop="75870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76449" stop="76387"/>
              <exon start="76294" stop="75962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76253" stop="75983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTGTTTGGATATAGTCTCTATCAGGGTTACTCCAAACTTACTTATTAACTATGATATGTCTTGGTCTTTTTAGGAGGAAGCATATGTGGAGTTCTTGCGTATAAAAGACGTTTTCTTAGAAGAGGGAGAATGTGCCTCTGATGCTCCTGATATTATAGATGAA : ATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAG : GTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA : GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTGGTGGTGATTGCAGATGTTACACTAGTTACCAAGCAAAGAAAGATAAGTATATGTCTGGTCTGGTCACCCAGAAACTGAATTTCATCAAGCA</gDNA_template>
            <first_frame> K  V  V  W  I  *  S  L  S  G  L  L  Q  T  Y  L  L  T  M  I  C  L  G  L  F  R  R  K  H  M  W  S  S  C  V  *  K  T  F  S  *  K  R  E  N  V  P  L  M  L  L  I  L  *  M  K :   Y  D  Q  Q  Q  R  K  I  V  M  *  W  R  K  D  S  E  P  L  Y  H  T  S  V  H  I  K  S  T  T  A  L  T  S  *   : G  G  R  S  L  R  S  G  S  W  A  W  D  M  V  F  C  S  F  L  L  C  L  M  *  N  I  I  L  F  L  Q  R  D  S  L  L  L  K  I  S  T  W  T  T  S  S  L   : R  T  S  R  E  R  S  K  E  R  K  I  Y  K  *  K  K  L  Q  W  H  N  N  K  N  R  R  H  R  D  L  K  K  K  Q  T  L  Q  Q  V  P  *  E  R  E  L  P  N  K  D  V  L  H  S  W  L  K  M  K  M  R  S  H  G  S  T  G  Y  *  K  S  *  K  R  E  L  S  M  R  M  S  L  Q  N  *  L  A  Q  K  T  C  F  L  T  Y  D  L  N  I  *  A  Q  I  L  L  V  *  C  I  H  M  W  W  *  L  Q  M  L  H  *  L  P  S  K  E  R  *  V  Y  V  W  S  G  H  P  E  T  E  F  H  Q  A </first_frame>
            <second_frame>  R  L  F  G  Y  S  L  Y  Q  G  Y  S  K  L  T  Y  *  L  *  Y  V  L  V  F  L  G  G  S  I  C  G  V  L  A  Y  K  R  R  F  L  R  R  G  R  M  C  L  *  C  S  *  Y  Y  R  *   : N  T  I  S  S  K  E  R  S  *  C  N  G  E  R  T  Q  S  L  C  I  I  H  P  C  I  *  R  A  P  L  L  L  H  L  K  :  V  E  G  A  *  D  R  E  A  G  H  G  I  W  S  S  A  A  S  F  C  A  *  C  E  T  S  F  S  F  Y  K  G  I  H  C  C  *  R  Y  Q  P  G  Q  H  Q  V  *  :  G  Q  V  E  R  E  A  K  K  E  K  F  T  S  E  K  S  C  N  G  T  T  T  R  T  E  D  T  E  T  *  K  R  S  K  L  Y  S  K  C  L  E  K  E  N  C  Q  T  K  T  C  Y  T  V  G  *  R  *  R  *  D  H  T  G  V  P  V  I  E  K  A  K  K  G  S  Y  R  *  E  *  V  C  K  I  D  W  H  R  R  L  A  F  *  H  M  I  *  T  S  R  H  K  F  C  W  S  N  A  F  I  C  G  G  D  C  R  C  Y  T  S  Y  Q  A  K  K  D  K  Y  M  S  G  L  V  T  Q  K  L  N  F  I  K   </second_frame>
            <third_frame>   G  C  L  D  I  V  S  I  R  V  T  P  N  L  L  I  N  Y  D  M  S  W  S  F  *  E  E  A  Y  V  E  F  L  R  I  K  D  V  F  L  E  E  G  E  C  A  S  D  A  P  D  I  I  D  E  :  I  R  S  A  A  K  K  D  R  D  V  M  E  K  G  L  R  A  F  V  S  Y  I  R  A  Y  K  E  H  H  C  S  Y  I  L  R :   W  K  E  L  E  I  G  K  L  G  M  G  Y  G  L  L  Q  L  P  S  V  P  D  V  K  H  H  S  L  S  T  K  G  F  T  A  V  E  D  I  N  L  D  N  I  K  F  K :   D  K  S  R  E  K  Q  R  K  K  N  L  Q  V  K  K  A  A  M  A  Q  Q  Q  E  Q  K  T  Q  R  L  K  K  E  A  N  S  T  A  S  A  L  R  K  R  T  A  K  Q  R  R  A  T  Q  L  V  E  D  E  D  E  I  T  R  E  Y  R  L  L  K  K  L  K  K  G  A  I  D  E  N  E  F  A  K  L  T  G  T  E  D  L  L  S  D  I  *  F  K  H  L  G  T  N  S  A  G  L  M  H  S  Y  V  V  V  I  A  D  V  T  L  V  T  K  Q  R  K  I  S  I  C  L  V  W  S  P  R  N  *  I  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77659" stop="77570"/>
                    <exon start="76715" stop="76609"/>
                    <exon start="76530" stop="76387"/>
                    <exon start="76294" stop="76009"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEAYVEFLRIKDVFLEEGECASDAPDIIDEIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYILRWKELEIGKLGMGYGLLQLPSVPDVKHHSLSTKGFTAVEDINLDNIKFKDKSREKQRKKNLQVKKAAMAQQQEQKTQRLKKEANSTASALRKRTAKQRRATQLVEDEDEITREYRLLKKLKKGAIDENEFAKLTGTEDLLSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76757" e_stop="76609"/>
            <exon e_start="76530" e_stop="76387"/>
            <exon e_start="76294" e_stop="75870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.991" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="76757" e_stop="76609" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76608" i_stop="76531" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76530" e_stop="76387" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76386" i_stop="76295" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76294" e_stop="75870" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76757" stop="76609"/>
              <exon start="76530" stop="76387"/>
              <exon start="76294" stop="75961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76678" stop="76609"/>
              <exon start="76530" stop="76387"/>
              <exon start="76294" stop="76102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76449" stop="76387"/>
              <exon start="76294" stop="75870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76449" stop="76387"/>
              <exon start="76294" stop="75962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76253" stop="75983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353298" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTAATGAATTCTGTCTGTTACTGATGTTCCTTTTTTCTAGATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAG : GTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAA : GGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTGGTGGTGATTGCAGATGTTACACTAGTTACCAAGCAAAGAAAGATAAGTATATGTCTGGTCTGGTCACCCAGAAACTGAATTTCATCAAGCA</gDNA_template>
            <first_frame> D  *  *  I  L  S  V  T  D  V  P  F  F  *  I  R  S  A  A  K  K  D  R  D  V  M  E  K  G  L  R  A  F  V  S  Y  I  R  A  Y  K  E  H  H  C  S  Y  I  L  R :   W  K  E  L  E  I  G  K  L  G  M  G  Y  G  L  L  Q  L  P  S  V  P  D  V  K  H  H  S  L  S  T  K  G  F  T  A  V  E  D  I  N  L  D  N  I  K  F  K :   D  K  S  R  E  K  Q  R  K  K  N  L  Q  V  K  K  A  A  M  A  Q  Q  Q  E  Q  K  T  Q  R  L  K  K  E  A  N  S  T  A  S  A  L  R  K  R  T  A  K  Q  R  R  A  T  Q  L  V  E  D  E  D  E  I  T  R  E  Y  R  L  L  K  K  L  K  K  G  A  I  D  E  N  E  F  A  K  L  T  G  T  E  D  L  L  S  D  I  *  F  K  H  L  G  T  N  S  A  G  L  M  H  S  Y  V  V  V  I  A  D  V  T  L  V  T  K  Q  R  K  I  S  I  C  L  V  W  S  P  R  N  *  I  S  S  S  </first_frame>
            <second_frame>  T  N  E  F  C  L  L  L  M  F  L  F  S  R  Y  D  Q  Q  Q  R  K  I  V  M  *  W  R  K  D  S  E  P  L  Y  H  T  S  V  H  I  K  S  T  T  A  L  T  S  *   : G  G  R  S  L  R  S  G  S  W  A  W  D  M  V  F  C  S  F  L  L  C  L  M  *  N  I  I  L  F  L  Q  R  D  S  L  L  L  K  I  S  T  W  T  T  S  S  L   : R  T  S  R  E  R  S  K  E  R  K  I  Y  K  *  K  K  L  Q  W  H  N  N  K  N  R  R  H  R  D  L  K  K  K  Q  T  L  Q  Q  V  P  *  E  R  E  L  P  N  K  D  V  L  H  S  W  L  K  M  K  M  R  S  H  G  S  T  G  Y  *  K  S  *  K  R  E  L  S  M  R  M  S  L  Q  N  *  L  A  Q  K  T  C  F  L  T  Y  D  L  N  I  *  A  Q  I  L  L  V  *  C  I  H  M  W  W  *  L  Q  M  L  H  *  L  P  S  K  E  R  *  V  Y  V  W  S  G  H  P  E  T  E  F  H  Q  A </second_frame>
            <third_frame>   L  M  N  S  V  C  Y  *  C  S  F  F  L  D  T  I  S  S  K  E  R  S  *  C  N  G  E  R  T  Q  S  L  C  I  I  H  P  C  I  *  R  A  P  L  L  L  H  L  K  :  V  E  G  A  *  D  R  E  A  G  H  G  I  W  S  S  A  A  S  F  C  A  *  C  E  T  S  F  S  F  Y  K  G  I  H  C  C  *  R  Y  Q  P  G  Q  H  Q  V  *  :  G  Q  V  E  R  E  A  K  K  E  K  F  T  S  E  K  S  C  N  G  T  T  T  R  T  E  D  T  E  T  *  K  R  S  K  L  Y  S  K  C  L  E  K  E  N  C  Q  T  K  T  C  Y  T  V  G  *  R  *  R  *  D  H  T  G  V  P  V  I  E  K  A  K  K  G  S  Y  R  *  E  *  V  C  K  I  D  W  H  R  R  L  A  F  *  H  M  I  *  T  S  R  H  K  F  C  W  S  N  A  F  I  C  G  G  D  C  R  C  Y  T  S  Y  Q  A  K  K  D  K  Y  M  S  G  L  V  T  Q  K  L  N  F  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76715" stop="76609"/>
                    <exon start="76530" stop="76387"/>
                    <exon start="76294" stop="76009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYILRWKELEIGKLGMGYGLLQLPSVPDVKHHSLSTKGFTAVEDINLDNIKFKDKSREKQRKKNLQVKKAAMAQQQEQKTQRLKKEANSTASALRKRTAKQRRATQLVEDEDEITREYRLLKKLKKGAIDENEFAKLTGTEDLLSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="79149" PGL_stop="78584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79149" e_stop="79134"/>
            <exon e_start="79035" e_stop="78738"/>
            <exon e_start="78617" e_stop="78584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.875" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79149" e_stop="79134" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="79133" i_stop="79036" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="79035" e_stop="78738" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.875">
            <gDNA_intron_boundary i_start="78737" i_stop="78618" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78617" e_stop="78584" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79149" stop="79134"/>
              <exon start="79035" stop="78738"/>
              <exon start="78617" stop="78584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCCTTCATATTGAG : TATTTGGAATGTGAAGCGGACAAGAAATCATCGCAGCTTGTACACCTCATAACAAAGAACAAGTCAAAAAAAATTATAGTGTGAGCTTACTTTCCTGGAATCTTGAATTGTATATCATATATTTTTACATACCTGCATAGATGGTAGGAGATCACGTTGGTGTTTAGTACTTGGTATTTTTTACTCCTGCAGTTATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAACTGTTCTTCCACGTCTCTCTTGTCTGAAAAGTTTTTCATTGATCTCTCTTCATGGAAGGATGAAGCAG : AGTGCAAGGGAGAAAGCACTAGCATCATTTACAT</gDNA_template>
            <first_frame> W  P  S  Y  *   : V  F  G  M  *  S  G  Q  E  I  I  A  A  C  T  P  H  N  K  E  Q  V  K  K  N  Y  S  V  S  L  L  S  W  N  L  E  L  Y  I  I  Y  F  Y  I  P  A  *  M  V  G  D  H  V  G  V  *  Y  L  V  F  F  T  P  A  V  I  S  *  L  V  L  V  L  I  I  G  E  L  F  F  H  V  S  L  V  *  K  V  F  H  *  S  L  F  M  E  G  *  S  R :   V  Q  G  R  K  H  *  H  H  L  H </first_frame>
            <second_frame>  G  L  H  I  E  :  Y  L  E  C  E  A  D  K  K  S  S  Q  L  V  H  L  I  T  K  N  K  S  K  K  I  I  V  *  A  Y  F  P  G  I  L  N  C  I  S  Y  I  F  T  Y  L  H  R  W  *  E  I  T  L  V  F  S  T  W  Y  F  L  L  L  Q  L  F  H  D  L  C  L  C  *  L  L  G  N  C  S  S  T  S  L  L  S  E  K  F  F  I  D  L  S  S  W  K  D  E  A   : E  C  K  G  E  S  T  S  I  I  Y   </second_frame>
            <third_frame>   A  F  I  L  S :   I  W  N  V  K  R  T  R  N  H  R  S  L  Y  T  S  *  Q  R  T  S  Q  K  K  L  *  C  E  L  T  F  L  E  S  *  I  V  Y  H  I  F  L  H  T  C  I  D  G  R  R  S  R  W  C  L  V  L  G  I  F  Y  S  C  S  Y  F  M  T  C  A  C  V  D  Y  W  G  T  V  L  P  R  L  S  C  L  K  S  F  S  L  I  S  L  H  G  R  M  K  Q  :  S  A  R  E  K  A  L  A  S  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78929" stop="78738"/>
                    <exon start="78617" stop="78585"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVYHIFLHTCIDGRRSRWCLVLGIFYSCSYFMTCACVDYWGTVLPRLSCLKSFSLISLHGRMKQSAREKALASFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="81517" PGL_stop="79197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81517" e_stop="81249"/>
            <exon e_start="80283" e_stop="80047"/>
            <exon e_start="79391" e_stop="79197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.964" acc_prob="0.767" e_score="0.979"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="81517" e_stop="81249" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81248" i_stop="80284" i_length="965"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="80283" e_stop="80047" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.767">
            <gDNA_intron_boundary i_start="80046" i_stop="79392" i_length="655"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="79391" e_stop="79197" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81517" stop="81249"/>
              <exon start="80283" stop="80047"/>
              <exon start="79391" stop="79197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81517" stop="81249"/>
              <exon start="80283" stop="80047"/>
              <exon start="79391" stop="79250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81517" stop="81249"/>
              <exon start="80283" stop="80047"/>
              <exon start="79391" stop="79251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCACGGCTTGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTTGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTCGTTTTACCTGTGGTTGAGATCATCCGTCGATCCTCTTCTAATCCCAAACCTCACAAG : GTAATGGGTATAATTATATCACCAACCAGGGAGTTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGGCCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCCTGGATATACTGGACTTTCGGGATCTTGAG : ATCCTGATATTAGACGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAAAGGCAGGATTGCGAAATCCTGTCAGGGTTGAAGTTCGGGCAGAAGCAAAACAG</gDNA_template>
            <first_frame> R  A  W  R  R  R  I  R  T  K  L  *  R  I  L  V  S  P  T  S  N  H  G  L  L  S  Q  F  W  K  P  *  P  T  P  A  S  S  S  V  L  L  F  R  P  P  P  Y  P  Y  S  A  A  T  R  M  S  P  L  T  P  P  L  A  L  V  K  P  *  P  S  F  Y  L  W  L  R  S  S  V  D  P  L  L  I  P  N  L  T  R :   *  W  V  *  L  Y  H  Q  P  G  S  C  R  H  K  Y  F  M  L  L  S  H  S  F  P  H  *  Q  M  L  G  L  C  F  L  L  E  D  *  K  *  R  Q  I  S  K  R  *  R  R  K  E  Q  I  C  *  L  G  H  L  G  G  Y  M  T  *  W  S  A  W  I  Y  W  T  F  G  I  L  R :   S  *  Y  *  T  R  L  I  G  Y  *  A  W  D  S  R  S  S  *  I  Q  S  F  L  V  Y  L  S  F  V  E  R  V  S  S  L  L  L  K  L  K  Q  L  K  N  Y  Q  R  Q  D  C  E  I  L  S  G  L  K  F  G  Q  K  Q  N   </first_frame>
            <second_frame>  G  H  G  V  G  E  S  E  Q  S  F  N  E  Y  S  F  L  R  P  R  T  T  A  C  *  A  S  F  G  S  P  N  Q  L  R  L  R  V  L  Y  S  C  S  G  R  H  H  T  L  T  L  Q  L  Q  G  C  H  R  *  R  R  H  W  L  W  *  N  P  S  L  R  F  T  C  G  *  D  H  P  S  I  L  F  *  S  Q  T  S  Q   : G  N  G  Y  N  Y  I  T  N  Q  G  V  V  V  T  N  I  S  C  C  S  A  I  H  F  H  I  S  K  C  *  A  Y  A  S  C  W  R  I  R  S  K  G  R  Y  Q  K  D  R  G  G  R  S  K  F  V  D  W  D  T  W  E  A  I  *  H  N  G  A  P  G  Y  T  G  L  S  G  S  *   : D  P  D  I  R  R  G  *  *  A  I  R  H  G  I  R  E  A  A  K  F  N  H  F  S  F  T  *  A  S  *  N  G  S  L  L  C  Y  S  N  *  S  S  *  R  T  I  K  G  R  I  A  K  S  C  Q  G  *  S  S  G  R  S  K  T  </second_frame>
            <third_frame>   G  M  A  S  A  N  Q  N  K  A  L  T  N  T  R  F  S  D  L  E  P  R  L  A  E  P  V  L  E  A  L  T  N  S  G  F  E  F  C  T  P  V  Q  A  A  T  I  P  L  L  C  S  Y  K  D  V  T  V  D  A  A  T  G  S  G  K  T  L  A  F  V  L  P  V  V  E  I  I  R  R  S  S  S  N  P  K  P  H  K  :  V  M  G  I  I  I  S  P  T  R  E  L  S  S  Q  I  F  H  V  A  Q  P  F  I  S  T  L  A  N  V  R  P  M  L  L  V  G  G  L  E  V  K  A  D  I  K  K  I  E  E  E  G  A  N  L  L  I  G  T  P  G  R  L  Y  D  I  M  E  R  L  D  I  L  D  F  R  D  L  E  :  I  L  I  L  D  E  A  D  R  L  L  G  M  G  F  E  K  Q  L  N  S  I  I  S  R  L  P  K  L  R  R  T  G  L  F  S  A  T  Q  T  E  A  V  E  E  L  S  K  A  G  L  R  N  P  V  R  V  E  V  R  A  E  A  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81515" stop="81249"/>
                    <exon start="80283" stop="80047"/>
                    <exon start="79391" stop="79197"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMASANQNKALTNTRFSDLEPRLAEPVLEALTNSGFEFCTPVQAATIPLLCSYKDVTVDAATGSGKTLAFVLPVVEIIRRSSSNPKPHKVMGIIISPTRELSSQIFHVAQPFISTLANVRPMLLVGGLEVKADIKKIEEEGANLLIGTPGRLYDIMERLDILDFRDLEILILDEADRLLGMGFEKQLNSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="81392" PGL_stop="81675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81392" e_stop="81675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81392" e_stop="81675" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81392" stop="81675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215910" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGAGTACAGAACTCGAAGCCGGAGTTGGTTAGGGCTTCCAAAACTGGCTCAGCAAGCCGTGGTTCGAGGTCGGAGAAACGAGTATTCGTTAAAGCTTTGTTCTGATTCGCCGACGCCATGCCCGCCGCACTCGCTAGTTTTTCTTCAACCCAACTGTGCTAGTAATTACAACCGACCGAGTCGAATAAGAACCGATTTACAAAGTTTTTCCGGTCCGGTTTGGCTGCTACCCGGTTTACTCTTGTATATTAAAAATAATTTCTACTTTCCCATCAACAAAAA</gDNA_template>
            <first_frame> Q  E  Y  R  T  R  S  R  S  W  L  G  L  P  K  L  A  Q  Q  A  V  V  R  G  R  R  N  E  Y  S  L  K  L  C  S  D  S  P  T  P  C  P  P  H  S  L  V  F  L  Q  P  N  C  A  S  N  Y  N  R  P  S  R  I  R  T  D  L  Q  S  F  S  G  P  V  W  L  L  P  G  L  L  L  Y  I  K  N  N  F  Y  F  P  I  N  K   </first_frame>
            <second_frame>  R  S  T  E  L  E  A  G  V  G  *  G  F  Q  N  W  L  S  K  P  W  F  E  V  G  E  T  S  I  R  *  S  F  V  L  I  R  R  R  H  A  R  R  T  R  *  F  F  F  N  P  T  V  L  V  I  T  T  D  R  V  E  *  E  P  I  Y  K  V  F  P  V  R  F  G  C  Y  P  V  Y  S  C  I  L  K  I  I  S  T  F  P  S  T  K  </second_frame>
            <third_frame>   G  V  Q  N  S  K  P  E  L  V  R  A  S  K  T  G  S  A  S  R  G  S  R  S  E  K  R  V  F  V  K  A  L  F  *  F  A  D  A  M  P  A  A  L  A  S  F  S  S  T  Q  L  C  *  *  L  Q  P  T  E  S  N  K  N  R  F  T  K  F  F  R  S  G  L  A  A  T  R  F  T  L  V  Y  *  K  *  F  L  L  S  H  Q  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81392" stop="81673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEYRTRSRSWLGLPKLAQQAVVRGRRNEYSLKLCSDSPTPCPPHSLVFLQPNCASNYNRPSRIRTDLQSFSGPVWLLPGLLLYIKNNFYFPINK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="84703" PGL_stop="84990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84703" e_stop="84990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="84703" e_stop="84990" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84703" stop="84990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATCTCCCTTGAGTTCGCCGATGGAGACGGAGTGTATCAGTTTTGGTAAATTTAGATAGTTTTGAAGGGTATTATAGTCCTTGTAGGAAGCTCAAATCTTTCTTGTGTACAACTTTTTCTTAATTTTACAAGTTCCGTCTGTACATACTAATTTTAGTTGTTAGGTCCATTGTCGTGTATATACTTTGGGAGTCAATTTTCATTTATTCGAGAACTAGGCGTTGATCATGTCATATTATATCACTATATAATATTATGAAATGAAATTAGTATTTGTATACGCGATT</gDNA_template>
            <first_frame> A  S  P  L  S  S  P  M  E  T  E  C  I  S  F  G  K  F  R  *  F  *  R  V  L  *  S  L  *  E  A  Q  I  F  L  V  Y  N  F  F  L  I  L  Q  V  P  S  V  H  T  N  F  S  C  *  V  H  C  R  V  Y  T  L  G  V  N  F  H  L  F  E  N  *  A  L  I  M  S  Y  Y  I  T  I  *  Y  Y  E  M  K  L  V  F  V  Y  A  I </first_frame>
            <second_frame>  H  L  P  *  V  R  R  W  R  R  S  V  S  V  L  V  N  L  D  S  F  E  G  Y  Y  S  P  C  R  K  L  K  S  F  L  C  T  T  F  S  *  F  Y  K  F  R  L  Y  I  L  I  L  V  V  R  S  I  V  V  Y  I  L  W  E  S  I  F  I  Y  S  R  T  R  R  *  S  C  H  I  I  S  L  Y  N  I  M  K  *  N  *  Y  L  Y  T  R   </second_frame>
            <third_frame>   I  S  L  E  F  A  D  G  D  G  V  Y  Q  F  W  *  I  *  I  V  L  K  G  I  I  V  L  V  G  S  S  N  L  S  C  V  Q  L  F  L  N  F  T  S  S  V  C  T  Y  *  F  *  L  L  G  P  L  S  C  I  Y  F  G  S  Q  F  S  F  I  R  E  L  G  V  D  H  V  I  L  Y  H  Y  I  I  L  *  N  E  I  S  I  C  I  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0090O01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="91494" PGL_stop="86389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91494" e_stop="91185"/>
            <exon e_start="89748" e_stop="89063"/>
            <exon e_start="88764" e_stop="88551"/>
            <exon e_start="88406" e_stop="88246"/>
            <exon e_start="88148" e_stop="88083"/>
            <exon e_start="88005" e_stop="87842"/>
            <exon e_start="87747" e_stop="87633"/>
            <exon e_start="87187" e_stop="87008"/>
            <exon e_start="86824" e_stop="86762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.460" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="0.998"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.980" e_score="0.994"/>
          <exon-intron don_prob="0.988" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91494" e_stop="91185" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.460">
            <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="89748" e_stop="89063" e_length="686"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88764" e_stop="88551" e_length="214"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88550" i_stop="88407" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="88406" e_stop="88246" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.980">
            <gDNA_intron_boundary i_start="88245" i_stop="88149" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88148" e_stop="88083" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88082" i_stop="88006" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88005" e_stop="87842" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.907" acc_prob="0.905">
            <gDNA_intron_boundary i_start="87841" i_stop="87748" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87633" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="87187" e_stop="87008" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87007" i_stop="86825" i_length="183"/>
          </intron>
          <exon e_serial="9" e_score="0.921">
            <gDNA_exon_boundary e_start="86824" e_stop="86762" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91494" stop="91185"/>
              <exon start="89748" stop="89514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91494" stop="91185"/>
              <exon start="89748" stop="89564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="91185"/>
              <exon start="89748" stop="89570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91247" stop="91185"/>
              <exon start="89748" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89592" stop="89063"/>
              <exon start="88764" stop="88623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89415" stop="89063"/>
              <exon start="88764" stop="88568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89386" stop="89063"/>
              <exon start="88764" stop="88551"/>
              <exon start="88406" stop="88371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89381" stop="89063"/>
              <exon start="88764" stop="88730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89310" stop="89063"/>
              <exon start="88764" stop="88716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89277" stop="89063"/>
              <exon start="88764" stop="88551"/>
              <exon start="88406" stop="88246"/>
              <exon start="88148" stop="88140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88353" stop="88246"/>
              <exon start="88148" stop="88083"/>
              <exon start="88005" stop="87842"/>
              <exon start="87747" stop="87633"/>
              <exon start="87187" stop="87008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88146" stop="88083"/>
              <exon start="88005" stop="87842"/>
              <exon start="87747" stop="87633"/>
              <exon start="87187" stop="87020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87725" stop="87633"/>
              <exon start="87187" stop="87008"/>
              <exon start="86824" stop="86762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGTTGCATACATATTTTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG : TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA : GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAG : GCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAG : GCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAG : GTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAG : GATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG : GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTCCGTCAAGCTAAG : GGTGAGAAGGGTGTCTCATTAGCAGGCTTCACGAGCTGGCTTATTTGGCGGTCCGCGTATCTG</gDNA_template>
            <first_frame> R  N  G  R  V  A  S  F  I  L  P  S  S  T  V  A  Y  I  F  C  S  K  S  P  K  C  L  N  Y  S  S  R  E  L  V  F  V  I  S  P  Y  P  F  C  F  T  L  E  K  K  N  A  S  D  F  D  Q  Y  F  L  A  D  Q  G  F  V  Y  I  K  L  K  R  V  F  F  L  K  C  K  S  N  T  V  D  S  *  Y  P  G  K  F  L  M  G  F  H  L  L  L  *  I  P  K   : V  S  F  L  N  I  A  Y  H  L  *  S  K  Q  *  L  P  *  *  K  I  S  T  V  S  A  S  V  R  G  T  L  K  M  A  L  V  R  A  A  R  S  S  F  R  R  S  G  G  A  I  G  N  Y  A  S  E  R  N  I  F  C  E  G  I  S  P  F  R  H  P  A  P  V  F  E  K  A  V  T  G  F  N  S  S  Y  I  P  S  T  Q  M  I  N  Q  L  S  F  G  N  R  G  M  K  F  T  P  Q  Y  Q  F  P  H  A  A  A  E  T  V  G  G  A  D  S  K  N  E  R  S  S  Y  P  G  L  E  A  T  K  Q  G  E  K  P  R  V  V  V  L  G  S  G  W  A  A  C  R  F  L  K  G  I  D  T  S  M  Y  D  V  V  C  I  A  P  R  N  H  M  V  F  T  P  L  L  A  S  T  C  V  G  T  L  E  F  R  S  V  A  E  P  V  T  Q  I  Q  K  A  L  A  K  D  P  N  S  Y  F  F  L  A  S  C  T  G  V  D  A  D  K  H  E  :  V  Y  C  E  T  V  G  D  R  G  V  S  H  E  H  Y  R  F  K  V  A  Y  D  K  L  V  I  A  S  G  A  E  P  L  T  F  G  I  K  G  V  E  E  H  A  F  F  L  R  E  V  Q  N  A  Q  E  I  R  K  K  L  L  M  N  L  M  V  S  E  T  P   : G  I  S  E  E  E  K  E  R  L  L  H  C  V  V  I  G  G  G  P  T  G  V  E  F  S  G  E  L  S  D  F  I  M  R  D  V  R  E  R  Y  A  H  V  K  N  Y  I  H  V  T  L  I  E  :  A  N  E  I  L  S  S  F  D  V  G  L  R  E  Y  A  T  K  H  L  T  K  :  V  G  V  R  L  V  H  G  V  V  K  E  V  H  P  D  K  I  V  L  S  D  G  S  D  V  P  Y  G  L  L  V  W  S  T  G  V  G  P  S  N  F  V  K  S  L  N  V  P  K  S  P  G  G  R :   I  G  I  D  E  W  L  R  V  P  S  V  E  D  V  F  A  I  G  D  C  A  G  F  L  E  Q  T  G  K  P  V  L  P  A  L  A  Q  :  V  A  E  R  Q  G  K  Y  L  V  K  L  F  T  D  I  G  K  Q  N  G  G  K  A  L  S  A  K  D  I  T  L  G  D  P  F  V  Y  K  H  L  G  S  M  A  T  V  G  R  Y  K  A  L  V  D  L  R  Q  A  K  :  G  E  K  G  V  S  L  A  G  F  T  S  W  L  I  W  R  S  A  Y  L </first_frame>
            <second_frame>  E  M  A  E  L  P  L  S  F  C  L  H  L  Q  L  H  T  Y  F  A  A  N  H  P  N  V  *  I  I  A  V  E  N  L  Y  L  *  F  L  H  T  L  F  V  L  H  *  K  K  K  M  H  Q  I  L  T  N  I  F  L  L  I  K  V  L  S  I  *  N  *  R  G  S  F  F  *  S  V  K  V  I  L  L  T  P  N  I  L  E  N  F  L  W  G  F  I  F  F  F  K  F  L  K  :  C  H  S  *  T  L  H  T  I  Y  S  P  N  S  N  C  L  N  K  K  F  Q  Q  Y  Q  L  R  *  G  V  L  *  K  W  H  W  *  G  L  Q  G  V  A  L  G  V  L  E  V  Q  S  E  T  M  Q  V  R  E  I  Y  S  V  K  A  Y  H  H  L  D  I  L  R  Q  F  L  K  K  L  *  Q  V  S  I  H  H  T  F  Q  V  P  R  *  *  I  N  *  V  S  G  T  E  E  *  S  L  P  L  N  I  S  F  H  M  Q  Q  L  R  R  L  G  V  L  I  Q  R  M  K  D  P  V  I  Q  A  L  K  Q  Q  N  R  A  K  N  L  E  *  L  F  L  D  L  V  G  P  L  A  D  S  S  K  E  *  T  L  V  C  M  M  L  F  V  *  H  Q  E  T  I  W  S  L  H  H  C  L  H  L  L  V  L  E  H  W  N  S  D  Q  L  L  N  Q  S  P  R  Y  R  K  H  W  Q  R  I  Q  I  H  I  S  S  *  H  P  A  L  V  L  M  L  I  N  M  K :   Y  T  V  K  R  L  A  I  V  E  S  L  M  S  I  T  D  L  R  L  H  M  T  S  L  S  L  L  L  E  L  N  L  *  P  L  A  *  R  E  W  R  N  M  P  S  F  S  V  K  Y  R  M  P  K  K  S  G  R  S  F  L  *  T  *  W  S  Q  K  L  Q  :  A  S  R  K  K  R  K  S  A  C  C  T  V  L  *  L  E  V  D  L  Q  G  L  N  S  A  G  S  *  V  I  L  L  *  E  M  Y  A  N  V  M  L  M  S  K  T  T  F  M  *  P  S  L  R :   L  M  R  F  C  L  H  L  M  L  G  C  G  S  M  R  Q  S  I  *  P  R :   L  V  S  A  L  F  M  V  L  *  K  K  Y  I  Q  I  K  *  F  S  V  M  E  V  M  F  H  M  A  F  S  F  G  L  L  E  L  V  L  P  I  L  L  N  H  *  M  F  P  S  L  L  V  E   : G  L  E  L  M  N  G  C  E  F  L  P  *  K  M  C  L  L  *  E  I  V  L  V  F  L  N  R  L  E  S  R  C  F  R  L  L  L  R :   L  L  K  G  K  G  S  I  L  L  N  C  S  P  T  L  G  N  R  M  E  A  K  L  S  Q  P  K  T  S  L  *  E  I  H  L  F  T  S  I  L  E  A  W  Q  L  W  G  V  T  R  L  L  L  I  S  V  K  L  R :   V  R  R  V  S  H  *  Q  A  S  R  A  G  L  F  G  G  P  R  I   </second_frame>
            <third_frame>   K  W  Q  S  C  L  F  H  F  A  F  I  Y  S  C  I  H  I  L  Q  Q  I  T  Q  M  F  K  L  *  Q  *  R  T  C  I  C  D  F  S  I  P  F  L  F  Y  I  R  K  K  K  C  I  R  F  *  P  I  F  S  C  *  S  R  F  C  L  Y  K  I  K  E  G  L  F  F  E  V  *  K  *  Y  C  *  L  L  I  S  W  K  I  S  Y  G  V  S  S  S  S  L  N  S  *  S :   V  I  L  K  H  C  I  P  S  I  V  Q  T  V  I  A  L  I  K  N  F  N  S  I  S  F  G  K  G  Y  S  E  N  G  I  G  K  G  C  K  E  *  L  *  A  F  W  R  C  N  R  K  L  C  K  *  E  K  Y  I  L  *  R  H  I  T  I  *  T  S  C  A  S  F  *  K  S  C  N  R  F  Q  F  I  I  H  S  K  Y  P  D  D  K  S  I  K  F  R  E  Q  R  N  E  V  Y  P  S  I  S  V  S  T  C  S  S  *  D  G  W  G  C  *  F  K  E  *  K  I  Q  L  S  R  P  *  S  N  K  T  G  R  K  T  *  S  S  C  S  W  I  W  L  G  R  L  Q  I  P  Q  R  N  R  H  *  Y  V  *  C  C  L  Y  S  T  K  K  P  Y  G  L  Y  T  I  A  C  I  Y  L  C  W  N  I  G  I  P  I  S  C  *  T  S  H  P  D  T  E  S  T  G  K  G  S  K  F  I  F  L  P  S  I  L  H  W  C  *  C  *  *  T  *   : S  I  L  *  N  G  W  R  S  W  S  L  S  *  A  L  Q  I  *  G  C  I  *  Q  A  C  H  C  F  W  S  *  T  F  D  L  W  H  K  G  S  G  G  T  C  L  L  S  P  *  S  T  E  C  P  R  N  Q  E  E  A  S  Y  E  L  D  G  L  R  N  S  R :   H  L  G  R  R  E  R  A  L  V  A  L  C  C  D  W  R  W  T  Y  R  G  *  I  Q  R  G  A  K  *  F  Y  Y  E  R  C  T  R  T  L  C  S  C  Q  K  L  H  S  C  D  P  H  *   : G  *  *  D  F  V  F  I  *  C  W  V  A  G  V  C  D  K  A  F  D  Q   : G  W  C  P  P  C  S  W  C  C  K  R  S  T  S  R  *  N  S  S  Q  *  W  K  *  C  S  I  W  P  S  R  L  V  Y  W  S  W  S  F  Q  F  C  *  I  T  K  C  S  Q  V  S  W  W  K  :  D  W  N  *  *  M  V  A  S  S  F  R  R  R  C  V  C  Y  R  R  L  C  W  F  S  *  T  D  W  K  A  G  A  S  G  S  C  S   : G  C  *  K  A  R  E  V  S  C  *  I  V  H  R  H  W  E  T  E  W  R  Q  S  S  L  S  Q  R  H  H  S  R  R  S  I  C  L  Q  A  S  W  K  H  G  N  C  G  A  L  Q  G  S  C  *  S  P  S  S  *   : G  *  E  G  C  L  I  S  R  L  H  E  L  A  Y  L  A  V  R  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89692" stop="89063"/>
                    <exon start="88764" stop="88551"/>
                    <exon start="88406" stop="88246"/>
                    <exon start="88148" stop="88083"/>
                    <exon start="88005" stop="87842"/>
                    <exon start="87747" stop="87633"/>
                    <exon start="87187" stop="87008"/>
                    <exon start="86824" stop="86762"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1593</number_coding_nucleotides>
                  <number_encoded_amino_acids>531</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISTVSASVRGTLKMALVRAARSSFRRSGGAIGNYASERNIFCEGISPFRHPAPVFEKAVTGFNSSYIPSTQMINQLSFGNRGMKFTPQYQFPHAAAETVGGADSKNERSSYPGLEATKQGEKPRVVVLGSGWAACRFLKGIDTSMYDVVCIAPRNHMVFTPLLASTCVGTLEFRSVAEPVTQIQKALAKDPNSYFFLASCTGVDADKHEVYCETVGDRGVSHEHYRFKVAYDKLVIASGAEPLTFGIKGVEEHAFFLREVQNAQEIRKKLLMNLMVSETPGISEEEKERLLHCVVIGGGPTGVEFSGELSDFIMRDVRERYAHVKNYIHVTLIEANEILSSFDVGLREYATKHLTKVGVRLVHGVVKEVHPDKIVLSDGSDVPYGLLVWSTGVGPSNFVKSLNVPKSPGGRIGIDEWLRVPSVEDVFAIGDCAGFLEQTGKPVLPALAQVAERQGKYLVKLFTDIGKQNGGKALSAKDITLGDPFVYKHLGSMATVGRYKALVDLRQAKGEKGVSLAGFTSWLIWRSAYL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91494" stop="91237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNGRVASFILPSSTVAYIFCSKSPKCLNYSSRELVFVISPYPFCFTLEKKNASDFDQYFLADQGFVYIKLKRVFFLKCKSNTVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91494" e_stop="91185"/>
            <exon e_start="89748" e_stop="89063"/>
            <exon e_start="88764" e_stop="88551"/>
            <exon e_start="88406" e_stop="88246"/>
            <exon e_start="88148" e_stop="87842"/>
            <exon e_start="87747" e_stop="87633"/>
            <exon e_start="87187" e_stop="87008"/>
            <exon e_start="86824" e_stop="86389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.460" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91494" e_stop="91185" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.460">
            <gDNA_intron_boundary i_start="91184" i_stop="89749" i_length="1436"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89748" e_stop="89063" e_length="686"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.949">
            <gDNA_intron_boundary i_start="89062" i_stop="88765" i_length="298"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88764" e_stop="88551" e_length="214"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88550" i_stop="88407" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88406" e_stop="88246" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.980">
            <gDNA_intron_boundary i_start="88245" i_stop="88149" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88148" e_stop="87842" e_length="307"/>
          </exon>
          <intron i_serial="5" don_prob="0.907" acc_prob="0.905">
            <gDNA_intron_boundary i_start="87841" i_stop="87748" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87747" e_stop="87633" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.963">
            <gDNA_intron_boundary i_start="87632" i_stop="87188" i_length="445"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87187" e_stop="87008" e_length="180"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87007" i_stop="86825" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86824" e_stop="86389" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91494" stop="91185"/>
              <exon start="89748" stop="89514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91494" stop="91185"/>
              <exon start="89748" stop="89564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91394" stop="91185"/>
              <exon start="89748" stop="89063"/>
              <exon start="88764" stop="88551"/>
              <exon start="88406" stop="88246"/>
              <exon start="88148" stop="87842"/>
              <exon start="87747" stop="87633"/>
              <exon start="87187" stop="87008"/>
              <exon start="86824" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91393" stop="91185"/>
              <exon start="89748" stop="89570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91247" stop="91185"/>
              <exon start="89748" stop="89156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89592" stop="89063"/>
              <exon start="88764" stop="88623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89415" stop="89063"/>
              <exon start="88764" stop="88568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89386" stop="89063"/>
              <exon start="88764" stop="88551"/>
              <exon start="88406" stop="88371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89381" stop="89063"/>
              <exon start="88764" stop="88730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89310" stop="89063"/>
              <exon start="88764" stop="88716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89277" stop="89063"/>
              <exon start="88764" stop="88551"/>
              <exon start="88406" stop="88246"/>
              <exon start="88148" stop="88140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87725" stop="87633"/>
              <exon start="87187" stop="87008"/>
              <exon start="86824" stop="86762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATGGCAGAGTTGCCTCTTTCATTTTGCCTTCATCTACAGTTGCATACATATTTTGCAGCAAATCACCCAAATGTTTAAATTATAGCAGTAGAGAACTTGTATTTGTGATTTCTCCATACCCTTTTTGTTTTACATTAGAAAAAAAAAATGCATCAGATTTTGACCAATATTTTCTTGCTGATCAAGGTTTTGTCTATATAAAATTAAAGAGGGTCTTTTTTTTGAAGTGTAAAAGTAATACTGTTGACTCCTAATATCCTGGAAAATTTCTTATGGGGTTTCATCTTCTTCTTTAAATTCCTAAAG : TGTCATTCTTAAACATTGCATACCATCTATAGTCCAAACAGTAATTGCCTTAATAAAAAATTTCAACAGTATCAGCTTCGGTAAGGGGTACTCTGAAAATGGCATTGGTAAGGGCTGCAAGGAGTAGCTTTAGGCGTTCTGGAGGTGCAATCGGAAACTATGCAAGTGAGAGAAATATATTCTGTGAAGGCATATCACCATTTAGACATCCTGCGCCAGTTTTTGAAAAAGCTGTAACAGGTTTCAATTCATCATACATTCCAAGTACCCAGATGATAAATCAATTAAGTTTCGGGAACAGAGGAATGAAGTTTACCCCTCAATATCAGTTTCCACATGCAGCAGCTGAGACGGTTGGGGGTGCTGATTCAAAGAATGAAAGATCCAGTTATCCAGGCCTTGAAGCAACAAAACAGGGCGAAAAACCTAGAGTAGTTGTTCTTGGATCTGGTTGGGCCGCTTGCAGATTCCTCAAAGGAATAGACACTAGTATGTATGATGTTGTTTGTATAGCACCAAGAAACCATATGGTCTTTACACCATTGCTTGCATCTACTTGTGTTGGAACATTGGAATTCCGATCAGTTGCTGAACCAGTCACCCAGATACAGAAAGCACTGGCAAAGGATCCAAATTCATATTTCTTCCTAGCATCCTGCACTGGTGTTGATGCTGATAAACATGAA : GTATACTGTGAAACGGTTGGCGATCGTGGAGTCTCTCATGAGCATTACAGATTTAAGGTTGCATATGACAAGCTTGTCATTGCTTCTGGAGCTGAACCTTTGACCTTTGGCATAAAGGGAGTGGAGGAACATGCCTTCTTTCTCCGTGAAGTACAGAATGCCCAAGAAATCAGGAAGAAGCTTCTTATGAACTTGATGGTCTCAGAAACTCCAG : GCATCTCGGAAGAAGAGAAAGAGCGCTTGTTGCACTGTGTTGTGATTGGAGGTGGACCTACAGGGGTTGAATTCAGCGGGGAGCTAAGTGATTTTATTATGAGAGATGTACGCGAACGTTATGCTCATGTCAAAAACTACATTCATGTGACCCTCATTGAG : GCTAATGAGATTTTGTCTTCATTTGATGTTGGGTTGCGGGAGTATGCGACAAAGCATTTGACCAAGGTAATGAATCCTTCAATTGCTTTGCATCAAGAAAGAAGTTTCTTCAGTTTCTGTGAGCAAAATTTCATACATATCAGGTTGGTGTCCGCCTTGTTCATGGTGTTGTAAAAGAAGTACATCCAGATAAAATAGTTCTCAGTGATGGAAGTGATGTTCCATATGGCCTTCTCGTTTGGTCTACTGGAGTTGGTCCTTCCAATTTTGTTAAATCACTAAATGTTCCCAAGTCTCCTGGTGGAAG : GATTGGAATTGATGAATGGTTGCGAGTTCCTTCCGTAGAAGATGTGTTTGCTATAGGAGATTGTGCTGGTTTTCTTGAACAGACTGGAAAGCCGGTGCTTCCGGCTCTTGCTCAG : GTTGCTGAAAGGCAAGGGAAGTATCTTGTTAAATTGTTCACCGACATTGGGAAACAGAATGGAGGCAAAGCTCTCTCAGCCAAAGACATCACTCTAGGAGATCCATTTGTTTACAAGCATCTTGGAAGCATGGCAACTGTGGGGCGTTACAAGGCTCTTGTTGATCTCCGTCAAGCTAAG : GGTGAGAAGGGTGTCTCATTAGCAGGCTTCACGAGCTGGCTTATTTGGCGGTCCGCGTATCTGACTCGAGTTATCAGCTGGAGGAACAGGTTTTACGTGGCTATGAACTGGGGAACAACGTTAATCTTTGGCAGAGACAATACTAAGATAGGATAAACTACCACTTCTAGTAGGATTTTCATGTTCTTGATCCATTTTTTGAACACTTCTAATAACCTACCTTGTAGTGTTATCAATAATGTTAATATCTTTGAGGATTGAAAAAGAAAAGGGGGAAAAAGTGCTTTGTCAAAATGGAATTATGAGGGTTGGGGCAAGGGATCTTTGACGACGTTAGAGTTATAATGTTACATCATTTCAAAACGTTATTAAATATTATGTCACATATTATTTTTGTTAAGTATTCATAACAATATTTCAAAGAACATGGAACATT</gDNA_template>
            <first_frame> R  N  G  R  V  A  S  F  I  L  P  S  S  T  V  A  Y  I  F  C  S  K  S  P  K  C  L  N  Y  S  S  R  E  L  V  F  V  I  S  P  Y  P  F  C  F  T  L  E  K  K  N  A  S  D  F  D  Q  Y  F  L  A  D  Q  G  F  V  Y  I  K  L  K  R  V  F  F  L  K  C  K  S  N  T  V  D  S  *  Y  P  G  K  F  L  M  G  F  H  L  L  L  *  I  P  K   : V  S  F  L  N  I  A  Y  H  L  *  S  K  Q  *  L  P  *  *  K  I  S  T  V  S  A  S  V  R  G  T  L  K  M  A  L  V  R  A  A  R  S  S  F  R  R  S  G  G  A  I  G  N  Y  A  S  E  R  N  I  F  C  E  G  I  S  P  F  R  H  P  A  P  V  F  E  K  A  V  T  G  F  N  S  S  Y  I  P  S  T  Q  M  I  N  Q  L  S  F  G  N  R  G  M  K  F  T  P  Q  Y  Q  F  P  H  A  A  A  E  T  V  G  G  A  D  S  K  N  E  R  S  S  Y  P  G  L  E  A  T  K  Q  G  E  K  P  R  V  V  V  L  G  S  G  W  A  A  C  R  F  L  K  G  I  D  T  S  M  Y  D  V  V  C  I  A  P  R  N  H  M  V  F  T  P  L  L  A  S  T  C  V  G  T  L  E  F  R  S  V  A  E  P  V  T  Q  I  Q  K  A  L  A  K  D  P  N  S  Y  F  F  L  A  S  C  T  G  V  D  A  D  K  H  E  :  V  Y  C  E  T  V  G  D  R  G  V  S  H  E  H  Y  R  F  K  V  A  Y  D  K  L  V  I  A  S  G  A  E  P  L  T  F  G  I  K  G  V  E  E  H  A  F  F  L  R  E  V  Q  N  A  Q  E  I  R  K  K  L  L  M  N  L  M  V  S  E  T  P   : G  I  S  E  E  E  K  E  R  L  L  H  C  V  V  I  G  G  G  P  T  G  V  E  F  S  G  E  L  S  D  F  I  M  R  D  V  R  E  R  Y  A  H  V  K  N  Y  I  H  V  T  L  I  E  :  A  N  E  I  L  S  S  F  D  V  G  L  R  E  Y  A  T  K  H  L  T  K  V  M  N  P  S  I  A  L  H  Q  E  R  S  F  F  S  F  C  E  Q  N  F  I  H  I  R  L  V  S  A  L  F  M  V  L  *  K  K  Y  I  Q  I  K  *  F  S  V  M  E  V  M  F  H  M  A  F  S  F  G  L  L  E  L  V  L  P  I  L  L  N  H  *  M  F  P  S  L  L  V  E   : G  L  E  L  M  N  G  C  E  F  L  P  *  K  M  C  L  L  *  E  I  V  L  V  F  L  N  R  L  E  S  R  C  F  R  L  L  L  R :   L  L  K  G  K  G  S  I  L  L  N  C  S  P  T  L  G  N  R  M  E  A  K  L  S  Q  P  K  T  S  L  *  E  I  H  L  F  T  S  I  L  E  A  W  Q  L  W  G  V  T  R  L  L  L  I  S  V  K  L  R :   V  R  R  V  S  H  *  Q  A  S  R  A  G  L  F  G  G  P  R  I  *  L  E  L  S  A  G  G  T  G  F  T  W  L  *  T  G  E  Q  R  *  S  L  A  E  T  I  L  R  *  D  K  L  P  L  L  V  G  F  S  C  S  *  S  I  F  *  T  L  L  I  T  Y  L  V  V  L  S  I  M  L  I  S  L  R  I  E  K  E  K  G  E  K  V  L  C  Q  N  G  I  M  R  V  G  A  R  D  L  *  R  R  *  S  Y  N  V  T  S  F  Q  N  V  I  K  Y  Y  V  T  Y  Y  F  C  *  V  F  I  T  I  F  Q  R  T  W  N  I </first_frame>
            <second_frame>  E  M  A  E  L  P  L  S  F  C  L  H  L  Q  L  H  T  Y  F  A  A  N  H  P  N  V  *  I  I  A  V  E  N  L  Y  L  *  F  L  H  T  L  F  V  L  H  *  K  K  K  M  H  Q  I  L  T  N  I  F  L  L  I  K  V  L  S  I  *  N  *  R  G  S  F  F  *  S  V  K  V  I  L  L  T  P  N  I  L  E  N  F  L  W  G  F  I  F  F  F  K  F  L  K  :  C  H  S  *  T  L  H  T  I  Y  S  P  N  S  N  C  L  N  K  K  F  Q  Q  Y  Q  L  R  *  G  V  L  *  K  W  H  W  *  G  L  Q  G  V  A  L  G  V  L  E  V  Q  S  E  T  M  Q  V  R  E  I  Y  S  V  K  A  Y  H  H  L  D  I  L  R  Q  F  L  K  K  L  *  Q  V  S  I  H  H  T  F  Q  V  P  R  *  *  I  N  *  V  S  G  T  E  E  *  S  L  P  L  N  I  S  F  H  M  Q  Q  L  R  R  L  G  V  L  I  Q  R  M  K  D  P  V  I  Q  A  L  K  Q  Q  N  R  A  K  N  L  E  *  L  F  L  D  L  V  G  P  L  A  D  S  S  K  E  *  T  L  V  C  M  M  L  F  V  *  H  Q  E  T  I  W  S  L  H  H  C  L  H  L  L  V  L  E  H  W  N  S  D  Q  L  L  N  Q  S  P  R  Y  R  K  H  W  Q  R  I  Q  I  H  I  S  S  *  H  P  A  L  V  L  M  L  I  N  M  K :   Y  T  V  K  R  L  A  I  V  E  S  L  M  S  I  T  D  L  R  L  H  M  T  S  L  S  L  L  L  E  L  N  L  *  P  L  A  *  R  E  W  R  N  M  P  S  F  S  V  K  Y  R  M  P  K  K  S  G  R  S  F  L  *  T  *  W  S  Q  K  L  Q  :  A  S  R  K  K  R  K  S  A  C  C  T  V  L  *  L  E  V  D  L  Q  G  L  N  S  A  G  S  *  V  I  L  L  *  E  M  Y  A  N  V  M  L  M  S  K  T  T  F  M  *  P  S  L  R :   L  M  R  F  C  L  H  L  M  L  G  C  G  S  M  R  Q  S  I  *  P  R  *  *  I  L  Q  L  L  C  I  K  K  E  V  S  S  V  S  V  S  K  I  S  Y  I  S  G  W  C  P  P  C  S  W  C  C  K  R  S  T  S  R  *  N  S  S  Q  *  W  K  *  C  S  I  W  P  S  R  L  V  Y  W  S  W  S  F  Q  F  C  *  I  T  K  C  S  Q  V  S  W  W  K  :  D  W  N  *  *  M  V  A  S  S  F  R  R  R  C  V  C  Y  R  R  L  C  W  F  S  *  T  D  W  K  A  G  A  S  G  S  C  S   : G  C  *  K  A  R  E  V  S  C  *  I  V  H  R  H  W  E  T  E  W  R  Q  S  S  L  S  Q  R  H  H  S  R  R  S  I  C  L  Q  A  S  W  K  H  G  N  C  G  A  L  Q  G  S  C  *  S  P  S  S  *   : G  *  E  G  C  L  I  S  R  L  H  E  L  A  Y  L  A  V  R  V  S  D  S  S  Y  Q  L  E  E  Q  V  L  R  G  Y  E  L  G  N  N  V  N  L  W  Q  R  Q  Y  *  D  R  I  N  Y  H  F  *  *  D  F  H  V  L  D  P  F  F  E  H  F  *  *  P  T  L  *  C  Y  Q  *  C  *  Y  L  *  G  L  K  K  K  R  G  K  K  C  F  V  K  M  E  L  *  G  L  G  Q  G  I  F  D  D  V  R  V  I  M  L  H  H  F  K  T  L  L  N  I  M  S  H  I  I  F  V  K  Y  S  *  Q  Y  F  K  E  H  G  T   </second_frame>
            <third_frame>   K  W  Q  S  C  L  F  H  F  A  F  I  Y  S  C  I  H  I  L  Q  Q  I  T  Q  M  F  K  L  *  Q  *  R  T  C  I  C  D  F  S  I  P  F  L  F  Y  I  R  K  K  K  C  I  R  F  *  P  I  F  S  C  *  S  R  F  C  L  Y  K  I  K  E  G  L  F  F  E  V  *  K  *  Y  C  *  L  L  I  S  W  K  I  S  Y  G  V  S  S  S  S  L  N  S  *  S :   V  I  L  K  H  C  I  P  S  I  V  Q  T  V  I  A  L  I  K  N  F  N  S  I  S  F  G  K  G  Y  S  E  N  G  I  G  K  G  C  K  E  *  L  *  A  F  W  R  C  N  R  K  L  C  K  *  E  K  Y  I  L  *  R  H  I  T  I  *  T  S  C  A  S  F  *  K  S  C  N  R  F  Q  F  I  I  H  S  K  Y  P  D  D  K  S  I  K  F  R  E  Q  R  N  E  V  Y  P  S  I  S  V  S  T  C  S  S  *  D  G  W  G  C  *  F  K  E  *  K  I  Q  L  S  R  P  *  S  N  K  T  G  R  K  T  *  S  S  C  S  W  I  W  L  G  R  L  Q  I  P  Q  R  N  R  H  *  Y  V  *  C  C  L  Y  S  T  K  K  P  Y  G  L  Y  T  I  A  C  I  Y  L  C  W  N  I  G  I  P  I  S  C  *  T  S  H  P  D  T  E  S  T  G  K  G  S  K  F  I  F  L  P  S  I  L  H  W  C  *  C  *  *  T  *   : S  I  L  *  N  G  W  R  S  W  S  L  S  *  A  L  Q  I  *  G  C  I  *  Q  A  C  H  C  F  W  S  *  T  F  D  L  W  H  K  G  S  G  G  T  C  L  L  S  P  *  S  T  E  C  P  R  N  Q  E  E  A  S  Y  E  L  D  G  L  R  N  S  R :   H  L  G  R  R  E  R  A  L  V  A  L  C  C  D  W  R  W  T  Y  R  G  *  I  Q  R  G  A  K  *  F  Y  Y  E  R  C  T  R  T  L  C  S  C  Q  K  L  H  S  C  D  P  H  *   : G  *  *  D  F  V  F  I  *  C  W  V  A  G  V  C  D  K  A  F  D  Q  G  N  E  S  F  N  C  F  A  S  R  K  K  F  L  Q  F  L  *  A  K  F  H  T  Y  Q  V  G  V  R  L  V  H  G  V  V  K  E  V  H  P  D  K  I  V  L  S  D  G  S  D  V  P  Y  G  L  L  V  W  S  T  G  V  G  P  S  N  F  V  K  S  L  N  V  P  K  S  P  G  G  R :   I  G  I  D  E  W  L  R  V  P  S  V  E  D  V  F  A  I  G  D  C  A  G  F  L  E  Q  T  G  K  P  V  L  P  A  L  A  Q  :  V  A  E  R  Q  G  K  Y  L  V  K  L  F  T  D  I  G  K  Q  N  G  G  K  A  L  S  A  K  D  I  T  L  G  D  P  F  V  Y  K  H  L  G  S  M  A  T  V  G  R  Y  K  A  L  V  D  L  R  Q  A  K  :  G  E  K  G  V  S  L  A  G  F  T  S  W  L  I  W  R  S  A  Y  L  T  R  V  I  S  W  R  N  R  F  Y  V  A  M  N  W  G  T  T  L  I  F  G  R  D  N  T  K  I  G  *  T  T  T  S  S  R  I  F  M  F  L  I  H  F  L  N  T  S  N  N  L  P  C  S  V  I  N  N  V  N  I  F  E  D  *  K  R  K  G  G  K  S  A  L  S  K  W  N  Y  E  G  W  G  K  G  S  L  T  T  L  E  L  *  C  Y  I  I  S  K  R  Y  *  I  L  C  H  I  L  F  L  L  S  I  H  N  N  I  S  K  N  M  E  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89692" stop="89063"/>
                    <exon start="88764" stop="88551"/>
                    <exon start="88406" stop="88246"/>
                    <exon start="88148" stop="87975"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISTVSASVRGTLKMALVRAARSSFRRSGGAIGNYASERNIFCEGISPFRHPAPVFEKAVTGFNSSYIPSTQMINQLSFGNRGMKFTPQYQFPHAAAETVGGADSKNERSSYPGLEATKQGEKPRVVVLGSGWAACRFLKGIDTSMYDVVCIAPRNHMVFTPLLASTCVGTLEFRSVAEPVTQIQKALAKDPNSYFFLASCTGVDADKHEVYCETVGDRGVSHEHYRFKVAYDKLVIASGAEPLTFGIKGVEEHAFFLREVQNAQEIRKKLLMNLMVSETPGISEEEKERLLHCVVIGGGPTGVEFSGELSDFIMRDVRERYAHVKNYIHVTLIEANEILSSFDVGLREYATKHLTKVMNPSIALHQERSFFSFCEQNFIHIRLVSALFMVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91494" stop="91237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNGRVASFILPSSTVAYIFCSKSPKCLNYSSRELVFVISPYPFCFTLEKKNASDFDQYFLADQGFVYIKLKRVFFLKCKSNTVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="106217" PGL_stop="94731"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106217" e_stop="106143"/>
            <exon e_start="106054" e_stop="105918"/>
            <exon e_start="104757" e_stop="104577"/>
            <exon e_start="104280" e_stop="104173"/>
            <exon e_start="104103" e_stop="104048"/>
            <exon e_start="102914" e_stop="102831"/>
            <exon e_start="102412" e_stop="102320"/>
            <exon e_start="101811" e_stop="101750"/>
            <exon e_start="101685" e_stop="101612"/>
            <exon e_start="97131" e_stop="96519"/>
            <exon e_start="96445" e_stop="96265"/>
            <exon e_start="96166" e_stop="96059"/>
            <exon e_start="95977" e_stop="95922"/>
            <exon e_start="95817" e_stop="95734"/>
            <exon e_start="95609" e_stop="95514"/>
            <exon e_start="95389" e_stop="95325"/>
            <exon e_start="95187" e_stop="95114"/>
            <exon e_start="95004" e_stop="94731"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.311" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.434" acc_prob="0.424" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.813" acc_prob="0.973" e_score="0.978"/>
          <exon-intron don_prob="0.882" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106217" e_stop="106143" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88"/>
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          <intron i_serial="3" don_prob="0.311" acc_prob="0.995">
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          </intron>
          <exon e_serial="4" e_score="1.000">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          <intron i_serial="5" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133"/>
          </intron>
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            <gDNA_exon_boundary e_start="102914" e_stop="102831" e_length="84"/>
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          <intron i_serial="6" don_prob="0.000" acc_prob="0.988">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          <intron i_serial="7" don_prob="0.941" acc_prob="0.994">
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          </intron>
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          <intron i_serial="9" don_prob="0.999" acc_prob="0.992">
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          <intron i_serial="15" don_prob="0.881" acc_prob="0.980">
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          </intron>
          <exon e_serial="16" e_score="1.000">
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          </exon>
          <intron i_serial="16" don_prob="0.935" acc_prob="0.999">
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          <intron i_serial="17" don_prob="0.997" acc_prob="0.986">
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          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="95004" e_stop="94731" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104173"/>
              <exon start="104103" stop="104048"/>
              <exon start="102914" stop="102876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446041" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446045" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="106210" stop="106143"/>
              <exon start="106054" stop="105918"/>
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              <exon start="102914" stop="102831"/>
              <exon start="102412" stop="102320"/>
              <exon start="101811" stop="101750"/>
              <exon start="101685" stop="101612"/>
              <exon start="97131" stop="97115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106210" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
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              <exon start="104103" stop="104048"/>
              <exon start="102914" stop="102831"/>
              <exon start="102412" stop="102323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106210" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
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              <exon start="104103" stop="104048"/>
              <exon start="102914" stop="102831"/>
              <exon start="102412" stop="102354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106208" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106206" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106203" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104173"/>
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              <exon start="102914" stop="102831"/>
              <exon start="102412" stop="102320"/>
              <exon start="101811" stop="101763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573819" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="102368" stop="102320"/>
              <exon start="101811" stop="101750"/>
              <exon start="101685" stop="101612"/>
              <exon start="97131" stop="96754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101770" stop="101750"/>
              <exon start="101685" stop="101612"/>
              <exon start="97131" stop="96655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97106" stop="96535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97066" stop="96675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96647" stop="96519"/>
              <exon start="96445" stop="96265"/>
              <exon start="96166" stop="96059"/>
              <exon start="95977" stop="95922"/>
              <exon start="95817" stop="95734"/>
              <exon start="95609" stop="95514"/>
              <exon start="95389" stop="95325"/>
              <exon start="95187" stop="95157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96638" stop="96519"/>
              <exon start="96445" stop="96265"/>
              <exon start="96166" stop="96059"/>
              <exon start="95977" stop="95922"/>
              <exon start="95817" stop="95734"/>
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              <exon start="95187" stop="95114"/>
              <exon start="95004" stop="94877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96352" stop="96265"/>
              <exon start="96166" stop="96059"/>
              <exon start="95977" stop="95922"/>
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              <exon start="95609" stop="95514"/>
              <exon start="95389" stop="95374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95806" stop="95734"/>
              <exon start="95609" stop="95514"/>
              <exon start="95389" stop="95325"/>
              <exon start="95187" stop="95114"/>
              <exon start="95004" stop="94731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAGGGTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTG : GTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG : GAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC : GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT : ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAG : CCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCAT : GTATGGGATAACATGATTATTGAATCTGCGTTGAAGACATACTACAAATCTGATATAATGTTAATGACACAAGTTCTTCTGAAAAACATCACT : CATGAATGGTCCGATGATGTTCCATCTTGGGAAGATTGCAAGGAGATGGTTTGTCCTGACCC : ATATGCTTCTGAAAGTATCCGTTTGGCCTGCAAATTTGCCTACAGAAATGCAACCCCGGGAAGCACTTTAACAG : ACGATTACTTCCTCTCTCGTCTTCCTGTTGTGGAGAAGAGGTTGGCACAAGGTGGGGTCCGCTTGGCCGAAGTTCTCAACAGAATTTTCACTAAAAAACCATCAGATGCTGCACAATGAAGATAAACTGCAGAAGAAAACCACTCTATGTATTCAATTATCCATTATAACTTGGAAGTTTCCCTCACGCCAAGAACTGAAACCTACTTAAGTGACTTATAAGTCAACTATTGTATTAAAATGGGTGTAATAAAATGTTACTTTAGATGCACAACTAGTCCATTATTACATGATAGATGCTACTATCATATTGGAATATGCTGTATGTTGCTTTTATGGATAATCAACCTCTATTTTACTTTTTAAGATAAGAGGAATCTTCAGCTTGTACACAACAAGAACCATTTCAACAGTTTTTGTATATATAGAACAAGTCCAAGTTTGGTGGGACACTTCCGGTTTTCGATATCTGTCAAGTTGTAGAACTTCTTTTGAGAATGTTGAGGTTAACTTCATTAAGCAGTATTTTCTTTCTCTGTGTTGCTTTTATCAACCAACATGGTGTTGAAGCATGGAGCAAAGAGGGGCATGTGATGACTTGTCGAATCGCGCAG : GGCTTGTTGAATGATGAGGCAGCTCATGCAGTCAAGATGTTGTTGCCGGAATATGTTAACGGTGACTTATCGGCCCTCTGTGTGTGGCCAGACCAAGTCAGGCACTGGTATAAGTATAAATGGACAAGCCCTCTACACTTCATTGATACACCAGATAAAGCTTGCAACTTTGATTATGAAA : GGGACTGTCATGATCAACATGGAGTAAAGGATATGTGTGTTGCTGGTGCAATTCAGAACTTTACTACTCAACTCTCTCATTACAGAGAGGGAACTTCTGATCGTCGAT : ATAATATGACAGAGGCTTTGCTGTTTTTGTCACATTTCATGGGAGATATCCATCAA : CCTATGCATGTTGGATTTACAAGTGATGCTGGAGGAAATTCTATTGATTTGCGCTGGTTTAGGCATAAATCAAACTTGCACCAT : GTGTGGGATAGGGAGATAATACTAACAGCTGCAAAAGACTACTATGCGAAGGATATAAACCTCCTTGAAGAAGACATTGAAGGGAACTTCACTGAC : GGAATTTGGTCTGATGATCTTGCTTCTTGGAGAGAATGTGGCAATGTCTTTTCTTGCGTAAACAA : GTTTGCAACGGAAAGTATAAATATAGCATGCAAATGGGGATACAAAGGTGTTGAAGCCGGTGAAACTTTATCAG : ATGATTACTTCAATTCAAGACTTCCAATAGTAATGAAACGAGTAGCACAAGGTGGAATAAGATTAGCGATGCTTTTAAACAACGTTTTTGGAGCTTCTCAACAAGAAGATTCAGTTGTTGCAACTTAATTACCAAATAATTTTAATAAAATAGTAATGAAAAACCATATATTACTTCATGTTTGACCAAAATAAAATAAAAACACTAAATTAGATGACACATCTTTGTTGTATTTAAATTCGTGTAAATTGTAATTACCCACAGAGATGTATTT</gDNA_template>
            <first_frame> F  *  G  L  F  H  L  K  N  Y  C  H  S  W  I  L  N  H  Q  N  N  P  *  L  L  :  V  E  *  F  D  W  K  R  W  V  G  L  S  S  N  G  L  *  E  *  L  L  F  *  *  W  F  K  I  F  L  V  G  G  K  R  D  T  I  L  S  A  K  L  L  R :   N  I  *  Q  K  M  L  *  L  Q  S  K  H  Y  S  Q  I  K  P  K  V  I  L  Q  L  S  A  P  G  L  M  R  F  G  A  T  T  T  T  A  G  A  L  H  Y  I  M  *  I  H  L  I  S  C  A  I  T  N  I  A  :  E  T  A  M  T  G  M  G  S  R  T  G  V  L  R  E  Q  Y  T  T  T  Q  C  N  F  R  R  D  I  M  I  *  I  Q  K  N  :  T  T  *  L  K  H  L  C  S  C  L  I  L  L  V  T  Y  I  S :   L  S  M  L  V  S  L  E  I  L  V  E  T  V  *  L  F  V  G  T  G  G  R  L  I  C  T  M :   Y  G  I  T  *  L  L  N  L  R  *  R  H  T  T  N  L  I  *  C  *  *  H  K  F  F  *  K  T  S  L :   M  N  G  P  M  M  F  H  L  G  K  I  A  R  R  W  F  V  L  T   : H  M  L  L  K  V  S  V  W  P  A  N  L  P  T  E  M  Q  P  R  E  A  L  *  Q  :  T  I  T  S  S  L  V  F  L  L  W  R  R  G  W  H  K  V  G  S  A  W  P  K  F  S  T  E  F  S  L  K  N  H  Q  M  L  H  N  E  D  K  L  Q  K  K  T  T  L  C  I  Q  L  S  I  I  T  W  K  F  P  S  R  Q  E  L  K  P  T  *  V  T  Y  K  S  T  I  V  L  K  W  V  *  *  N  V  T  L  D  A  Q  L  V  H  Y  Y  M  I  D  A  T  I  I  L  E  Y  A  V  C  C  F  Y  G  *  S  T  S  I  L  L  F  K  I  R  G  I  F  S  L  Y  T  T  R  T  I  S  T  V  F  V  Y  I  E  Q  V  Q  V  W  W  D  T  S  G  F  R  Y  L  S  S  C  R  T  S  F  E  N  V  E  V  N  F  I  K  Q  Y  F  L  S  L  C  C  F  Y  Q  P  T  W  C  *  S  M  E  Q  R  G  A  C  D  D  L  S  N  R  A   : G  L  V  E  *  *  G  S  S  C  S  Q  D  V  V  A  G  I  C  *  R  *  L  I  G  P  L  C  V  A  R  P  S  Q  A  L  V  *  V  *  M  D  K  P  S  T  L  H  *  Y  T  R  *  S  L  Q  L  *  L  *  K :   G  L  S  *  S  T  W  S  K  G  Y  V  C  C  W  C  N  S  E  L  Y  Y  S  T  L  S  L  Q  R  G  N  F  *  S  S  I :   *  Y  D  R  G  F  A  V  F  V  T  F  H  G  R  Y  P  S   : T  Y  A  C  W  I  Y  K  *  C  W  R  K  F  Y  *  F  A  L  V  *  A  *  I  K  L  A  P   : C  V  G  *  G  D  N  T  N  S  C  K  R  L  L  C  E  G  Y  K  P  P  *  R  R  H  *  R  E  L  H  *   : R  N  L  V  *  *  S  C  F  L  E  R  M  W  Q  C  L  F  L  R  K  Q  :  V  C  N  G  K  Y  K  Y  S  M  Q  M  G  I  Q  R  C  *  S  R  *  N  F  I  R :   *  L  L  Q  F  K  T  S  N  S  N  E  T  S  S  T  R  W  N  K  I  S  D  A  F  K  Q  R  F  W  S  F  S  T  R  R  F  S  C  C  N  L  I  T  K  *  F  *  *  N  S  N  E  K  P  Y  I  T  S  C  L  T  K  I  K  *  K  H  *  I  R  *  H  I  F  V  V  F  K  F  V  *  I  V  I  T  H  R  D  V  F </first_frame>
            <second_frame>  S  R  V  Y  S  T  S  K  I  I  V  I  L  G  S  *  T  T  K  T  T  P  S  Y  W :   L  S  N  L  I  G  K  D  G  W  V  *  A  Q  M  V  C  R  S  S  C  C  S  D  D  G  S  K  Y  S  W  L  G  E  R  G  T  L  Y  Y  L  Q  N  C  *   : G  I  S  N  R  R  C  F  S  C  S  Q  S  I  T  P  R  S  S  R  R  *  S  C  S  C  L  L  L  A  *  *  G  S  A  P  L  P  L  P  L  E  L  S  I  T  L  C  R  Y  T  *  F  L  V  Q  L  Q  I  L  P :   R  L  P  *  R  A  W  A  Q  G  Q  V  C  Y  G  S  N  I  Q  L  L  N  A  T  F  A  G  I  L  *  F  E  F  R  K  I :   Q  L  D  *  S  T  Y  V  L  V  S  F  C  W  *  R  T  S   : A  S  P  C  W  F  H  W  R  S  W  W  K  Q  Y  N  C  S  L  V  Q  E  E  D  *  F  A  P   : C  M  G  *  H  D  Y  *  I  C  V  E  D  I  L  Q  I  *  Y  N  V  N  D  T  S  S  S  E  K  H  H   : S  *  M  V  R  *  C  S  I  L  G  R  L  Q  G  D  G  L  S  *  P  :  I  C  F  *  K  Y  P  F  G  L  Q  I  C  L  Q  K  C  N  P  G  K  H  F  N  R :   R  L  L  P  L  S  S  S  C  C  G  E  E  V  G  T  R  W  G  P  L  G  R  S  S  Q  Q  N  F  H  *  K  T  I  R  C  C  T  M  K  I  N  C  R  R  K  P  L  Y  V  F  N  Y  P  L  *  L  G  S  F  P  H  A  K  N  *  N  L  L  K  *  L  I  S  Q  L  L  Y  *  N  G  C  N  K  M  L  L  *  M  H  N  *  S  I  I  T  *  *  M  L  L  S  Y  W  N  M  L  Y  V  A  F  M  D  N  Q  P  L  F  Y  F  L  R  *  E  E  S  S  A  C  T  Q  Q  E  P  F  Q  Q  F  L  Y  I  *  N  K  S  K  F  G  G  T  L  P  V  F  D  I  C  Q  V  V  E  L  L  L  R  M  L  R  L  T  S  L  S  S  I  F  F  L  C  V  A  F  I  N  Q  H  G  V  E  A  W  S  K  E  G  H  V  M  T  C  R  I  A  Q  :  G  L  L  N  D  E  A  A  H  A  V  K  M  L  L  P  E  Y  V  N  G  D  L  S  A  L  C  V  W  P  D  Q  V  R  H  W  Y  K  Y  K  W  T  S  P  L  H  F  I  D  T  P  D  K  A  C  N  F  D  Y  E   : R  D  C  H  D  Q  H  G  V  K  D  M  C  V  A  G  A  I  Q  N  F  T  T  Q  L  S  H  Y  R  E  G  T  S  D  R  R   : Y  N  M  T  E  A  L  L  F  L  S  H  F  M  G  D  I  H  Q  :  P  M  H  V  G  F  T  S  D  A  G  G  N  S  I  D  L  R  W  F  R  H  K  S  N  L  H  H  :  V  W  D  R  E  I  I  L  T  A  A  K  D  Y  Y  A  K  D  I  N  L  L  E  E  D  I  E  G  N  F  T  D  :  G  I  W  S  D  D  L  A  S  W  R  E  C  G  N  V  F  S  C  V  N  K :   F  A  T  E  S  I  N  I  A  C  K  W  G  Y  K  G  V  E  A  G  E  T  L  S   : D  D  Y  F  N  S  R  L  P  I  V  M  K  R  V  A  Q  G  G  I  R  L  A  M  L  L  N  N  V  F  G  A  S  Q  Q  E  D  S  V  V  A  T  *  L  P  N  N  F  N  K  I  V  M  K  N  H  I  L  L  H  V  *  P  K  *  N  K  N  T  K  L  D  D  T  S  L  L  Y  L  N  S  C  K  L  *  L  P  T  E  M  Y   </second_frame>
            <third_frame>   L  G  F  I  P  P  Q  K  L  L  S  F  L  D  L  E  P  P  K  Q  P  L  A  T   : G  *  V  I  *  L  E  K  M  G  G  F  E  L  K  W  F  V  G  V  A  V  V  L  M  M  V  Q  N  I  L  G  W  G  K  E  G  H  Y  I  I  C  K  I  A  E  :  E  Y  L  T  E  D  A  L  A  A  V  K  A  L  L  P  D  Q  A  E  G  D  L  A  A  V  C  S  W  P  D  E  V  R  R  H  Y  H  Y  R  W  S  S  P  L  H  Y  V  D  T  P  D  F  L  C  N  Y  K  Y  C   : R  D  C  H  D  G  H  G  L  K  D  R  C  V  T  G  A  I  Y  N  Y  S  M  Q  L  S  Q  G  Y  Y  D  L  N  S  E  K   : Y  N  L  T  E  A  L  M  F  L  S  H  F  V  G  D  V  H  Q  :  P  L  H  V  G  F  T  G  D  L  G  G  N  S  I  I  V  R  W  Y  R  R  K  T  N  L  H  H  :  V  W  D  N  M  I  I  E  S  A  L  K  T  Y  Y  K  S  D  I  M  L  M  T  Q  V  L  L  K  N  I  T  :  H  E  W  S  D  D  V  P  S  W  E  D  C  K  E  M  V  C  P  D  P :   Y  A  S  E  S  I  R  L  A  C  K  F  A  Y  R  N  A  T  P  G  S  T  L  T   : D  D  Y  F  L  S  R  L  P  V  V  E  K  R  L  A  Q  G  G  V  R  L  A  E  V  L  N  R  I  F  T  K  K  P  S  D  A  A  Q  *  R  *  T  A  E  E  N  H  S  M  Y  S  I  I  H  Y  N  L  E  V  S  L  T  P  R  T  E  T  Y  L  S  D  L  *  V  N  Y  C  I  K  M  G  V  I  K  C  Y  F  R  C  T  T  S  P  L  L  H  D  R  C  Y  Y  H  I  G  I  C  C  M  L  L  L  W  I  I  N  L  Y  F  T  F  *  D  K  R  N  L  Q  L  V  H  N  K  N  H  F  N  S  F  C  I  Y  R  T  S  P  S  L  V  G  H  F  R  F  S  I  S  V  K  L  *  N  F  F  *  E  C  *  G  *  L  H  *  A  V  F  S  F  S  V  L  L  L  S  T  N  M  V  L  K  H  G  A  K  R  G  M  *  *  L  V  E  S  R  R :   A  C  *  M  M  R  Q  L  M  Q  S  R  C  C  C  R  N  M  L  T  V  T  Y  R  P  S  V  C  G  Q  T  K  S  G  T  G  I  S  I  N  G  Q  A  L  Y  T  S  L  I  H  Q  I  K  L  A  T  L  I  M  K  :  G  T  V  M  I  N  M  E  *  R  I  C  V  L  L  V  Q  F  R  T  L  L  L  N  S  L  I  T  E  R  E  L  L  I  V  D  :  I  I  *  Q  R  L  C  C  F  C  H  I  S  W  E  I  S  I  N :   L  C  M  L  D  L  Q  V  M  L  E  E  I  L  L  I  C  A  G  L  G  I  N  Q  T  C  T  M :   C  G  I  G  R  *  Y  *  Q  L  Q  K  T  T  M  R  R  I  *  T  S  L  K  K  T  L  K  G  T  S  L  T :   E  F  G  L  M  I  L  L  L  G  E  N  V  A  M  S  F  L  A  *  T   : S  L  Q  R  K  V  *  I  *  H  A  N  G  D  T  K  V  L  K  P  V  K  L  Y  Q  :  M  I  T  S  I  Q  D  F  Q  *  *  *  N  E  *  H  K  V  E  *  D  *  R  C  F  *  T  T  F  L  E  L  L  N  K  K  I  Q  L  L  Q  L  N  Y  Q  I  I  L  I  K  *  *  *  K  T  I  Y  Y  F  M  F  D  Q  N  K  I  K  T  L  N  *  M  T  H  L  C  C  I  *  I  R  V  N  C  N  Y  P  Q  R  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96704" stop="96519"/>
                    <exon start="96445" stop="96265"/>
                    <exon start="96166" stop="96059"/>
                    <exon start="95977" stop="95922"/>
                    <exon start="95817" stop="95734"/>
                    <exon start="95609" stop="95514"/>
                    <exon start="95389" stop="95325"/>
                    <exon start="95187" stop="95114"/>
                    <exon start="95004" stop="94877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKSKFGGTLPVFDICQVVELLLRMLRLTSLSSIFFLCVAFINQHGVEAWSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQHGVKDMCVAGAIQNFTTQLSHYREGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGNVFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMKRVAQGGIRLAMLLNNVFGASQQEDSVVAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106040" stop="105918"/>
                    <exon start="104757" stop="104577"/>
                    <exon start="104280" stop="104173"/>
                    <exon start="104103" stop="104048"/>
                    <exon start="102914" stop="102831"/>
                    <exon start="102412" stop="102320"/>
                    <exon start="101811" stop="101750"/>
                    <exon start="101685" stop="101612"/>
                    <exon start="97131" stop="97013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKMGGFELKWFVGVAVVLMMVQNILGWGKEGHYIICKIAEEYLTEDALAAVKALLPDQAEGDLAAVCSWPDEVRRHYHYRWSSPLHYVDTPDFLCNYKYCRDCHDGHGLKDRCVTGAIYNYSMQLSQGYYDLNSEKYNLTEALMFLSHFVGDVHQPLHVGFTGDLGGNSIIVRWYRRKTNLHHVWDNMIIESALKTYYKSDIMLMTQVLLKNITHEWSDDVPSWEDCKEMVCPDPYASESIRLACKFAYRNATPGSTLTDDYFLSRLPVVEKRLAQGGVRLAEVLNRIFTKKPSDAAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="106217" e_stop="106143"/>
            <exon e_start="106054" e_stop="105918"/>
            <exon e_start="104757" e_stop="104577"/>
            <exon e_start="104280" e_stop="104173"/>
            <exon e_start="104103" e_stop="104048"/>
            <exon e_start="102914" e_stop="102827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="0.920"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.311" acc_prob="0.995" e_score="0.972"/>
          <exon-intron don_prob="0.434" acc_prob="0.424" e_score="0.991"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="0.964"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="106217" e_stop="106143" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106142" i_stop="106055" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="106054" e_stop="105918" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105917" i_stop="104758" i_length="1160"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="104757" e_stop="104577" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.311" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104576" i_stop="104281" i_length="296"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="104280" e_stop="104173" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.434" acc_prob="0.424">
            <gDNA_intron_boundary i_start="104172" i_stop="104104" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="104103" e_stop="104048" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104047" i_stop="102915" i_length="1133"/>
          </intron>
          <exon e_serial="6" e_score="0.955">
            <gDNA_exon_boundary e_start="102914" e_stop="102827" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104173"/>
              <exon start="104103" stop="104048"/>
              <exon start="102914" stop="102876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106210" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104173"/>
              <exon start="104103" stop="104048"/>
              <exon start="102914" stop="102827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106208" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106206" stop="106143"/>
              <exon start="106054" stop="105918"/>
              <exon start="104757" stop="104577"/>
              <exon start="104280" stop="104244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAGGGTTTATTCCACCTCAAAAATTATTGTCATTCTTGGATCTTGAACCACCAAAACAACCCCTAGCTACTG : GTTGAGTAATTTGATTGGAAAAGATGGGTGGGTTTGAGCTCAAATGGTTTGTAGGAGTAGCTGTTGTTCTGATGATGGTTCAAAATATTCTTGGTTGGGGGAAAGAGGGACACTATATTATCTGCAAAATTGCTGAG : GAATATCTAACAGAAGATGCTTTAGCTGCAGTCAAAGCATTACTCCCAGATCAAGCCGAAGGTGATCTTGCAGCTGTCTGCTCCTGGCCTGATGAGGTTCGGCGCCACTACCACTACCGCTGGAGCTCTCCATTACATTATGTAGATACACCTGATTTCTTGTGCAATTACAAATATTGCC : GAGACTGCCATGACGGGCATGGGCTCAAGGACAGGTGTGTTACGGGAGCAATATACAACTACTCAATGCAACTTTCGCAGGGATATTATGATTTGAATTCAGAAAAAT : ACAACTTGACTGAAGCACTTATGTTCTTGTCTCATTTTGTTGGTGACGTACATCAG : CCTCTCCATGTTGGTTTCACTGGAGATCTTGGTGGAAACAGTATAATTGTTCGTTGGTACAGGAGGAAGACTAATTTGCACCATGTAG</gDNA_template>
            <first_frame> F  *  G  L  F  H  L  K  N  Y  C  H  S  W  I  L  N  H  Q  N  N  P  *  L  L  :  V  E  *  F  D  W  K  R  W  V  G  L  S  S  N  G  L  *  E  *  L  L  F  *  *  W  F  K  I  F  L  V  G  G  K  R  D  T  I  L  S  A  K  L  L  R :   N  I  *  Q  K  M  L  *  L  Q  S  K  H  Y  S  Q  I  K  P  K  V  I  L  Q  L  S  A  P  G  L  M  R  F  G  A  T  T  T  T  A  G  A  L  H  Y  I  M  *  I  H  L  I  S  C  A  I  T  N  I  A  :  E  T  A  M  T  G  M  G  S  R  T  G  V  L  R  E  Q  Y  T  T  T  Q  C  N  F  R  R  D  I  M  I  *  I  Q  K  N  :  T  T  *  L  K  H  L  C  S  C  L  I  L  L  V  T  Y  I  S :   L  S  M  L  V  S  L  E  I  L  V  E  T  V  *  L  F  V  G  T  G  G  R  L  I  C  T  M  * </first_frame>
            <second_frame>  S  R  V  Y  S  T  S  K  I  I  V  I  L  G  S  *  T  T  K  T  T  P  S  Y  W :   L  S  N  L  I  G  K  D  G  W  V  *  A  Q  M  V  C  R  S  S  C  C  S  D  D  G  S  K  Y  S  W  L  G  E  R  G  T  L  Y  Y  L  Q  N  C  *   : G  I  S  N  R  R  C  F  S  C  S  Q  S  I  T  P  R  S  S  R  R  *  S  C  S  C  L  L  L  A  *  *  G  S  A  P  L  P  L  P  L  E  L  S  I  T  L  C  R  Y  T  *  F  L  V  Q  L  Q  I  L  P :   R  L  P  *  R  A  W  A  Q  G  Q  V  C  Y  G  S  N  I  Q  L  L  N  A  T  F  A  G  I  L  *  F  E  F  R  K  I :   Q  L  D  *  S  T  Y  V  L  V  S  F  C  W  *  R  T  S   : A  S  P  C  W  F  H  W  R  S  W  W  K  Q  Y  N  C  S  L  V  Q  E  E  D  *  F  A  P  C   </second_frame>
            <third_frame>   L  G  F  I  P  P  Q  K  L  L  S  F  L  D  L  E  P  P  K  Q  P  L  A  T   : G  *  V  I  *  L  E  K  M  G  G  F  E  L  K  W  F  V  G  V  A  V  V  L  M  M  V  Q  N  I  L  G  W  G  K  E  G  H  Y  I  I  C  K  I  A  E  :  E  Y  L  T  E  D  A  L  A  A  V  K  A  L  L  P  D  Q  A  E  G  D  L  A  A  V  C  S  W  P  D  E  V  R  R  H  Y  H  Y  R  W  S  S  P  L  H  Y  V  D  T  P  D  F  L  C  N  Y  K  Y  C   : R  D  C  H  D  G  H  G  L  K  D  R  C  V  T  G  A  I  Y  N  Y  S  M  Q  L  S  Q  G  Y  Y  D  L  N  S  E  K   : Y  N  L  T  E  A  L  M  F  L  S  H  F  V  G  D  V  H  Q  :  P  L  H  V  G  F  T  G  D  L  G  G  N  S  I  I  V  R  W  Y  R  R  K  T  N  L  H  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106040" stop="105918"/>
                    <exon start="104757" stop="104577"/>
                    <exon start="104280" stop="104173"/>
                    <exon start="104103" stop="104048"/>
                    <exon start="102914" stop="102828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEKMGGFELKWFVGVAVVLMMVQNILGWGKEGHYIICKIAEEYLTEDALAAVKALLPDQAEGDLAAVCSWPDEVRRHYHYRWSSPLHYVDTPDFLCNYKYCRDCHDGHGLKDRCVTGAIYNYSMQLSQGYYDLNSEKYNLTEALMFLSHFVGDVHQPLHVGFTGDLGGNSIIVRWYRRKTNLHHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="109267" PGL_stop="113840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109267" e_stop="109631"/>
            <exon e_start="110776" e_stop="110955"/>
            <exon e_start="111163" e_stop="111244"/>
            <exon e_start="111317" e_stop="111424"/>
            <exon e_start="111673" e_stop="111831"/>
            <exon e_start="113246" e_stop="113590"/>
            <exon e_start="113831" e_stop="113840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.915" e_score="0.994"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109267" e_stop="109631" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="109632" i_stop="110775" i_length="1144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110776" e_stop="110955" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.943">
            <gDNA_intron_boundary i_start="110956" i_stop="111162" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111163" e_stop="111244" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.911">
            <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111317" e_stop="111424" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111673" e_stop="111831" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="113246" e_stop="113590" e_length="345"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="113591" i_stop="113830" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="113831" e_stop="113840" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109267" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109269" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109274" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109288" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109301" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109304" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109308" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109312" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109379" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109390" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109397" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109416" stop="109631"/>
              <exon start="110776" stop="110955"/>
              <exon start="111163" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111419" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113590"/>
              <exon start="113831" stop="113840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGAGCGTTCAAGAACAAGAATGGAAACAAAATACAAGAAAGTCGTGTAAACCTCTCCAACTCTCTTTCCAAAACCTTGTTAACTCAGTGAGTAAAATTGATTGTGATTAAGGATGAAGGCTGTTGTAATCACAAGCCCTGGTGGTCCAGAAGTGTTGAAGCTTCAAGAAGTGGAAGACCCACAAATTAAAGATGATGAAATCTTGATTAAGATAGCAGCTACTGCCCTTAATAGAGCTGATACCCTTCAACGCCAAGGTAAATACCCACCCCCTAAAGGCGACAGTGAATACCCAGGTCTTGAATGTTCTGGAACTGTTGAAGCAGTCGGCAAGGAAGTTACTCGCTGGAAAATTGGTGATCAG : GTATGTGCTCTCATTGGTGGAGGTGGTTATGCGGAGAAAGTAGCTGTACCTACTGGACAAGTTCTTCCTATTCCATCAGGTGTGTCTTTACAAGATGCGGCTAGCTTTCCTGAAGTGGTGTGCACTGTTTGGTCGACCATTTTCATGACGAGCAAGCTTTCCTCTGGTGAAACGTTTCTG : ATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG : GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG : GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG : CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA : AAACTATAGA</gDNA_template>
            <first_frame> *  S  V  Q  E  Q  E  W  K  Q  N  T  R  K  S  C  K  P  L  Q  L  S  F  Q  N  L  V  N  S  V  S  K  I  D  C  D  *  G  *  R  L  L  *  S  Q  A  L  V  V  Q  K  C  *  S  F  K  K  W  K  T  H  K  L  K  M  M  K  S  *  L  R  *  Q  L  L  P  L  I  E  L  I  P  F  N  A  K  V  N  T  H  P  L  K  A  T  V  N  T  Q  V  L  N  V  L  E  L  L  K  Q  S  A  R  K  L  L  A  G  K  L  V  I  R :   Y  V  L  S  L  V  E  V  V  M  R  R  K  *  L  Y  L  L  D  K  F  F  L  F  H  Q  V  C  L  Y  K  M  R  L  A  F  L  K  W  C  A  L  F  G  R  P  F  S  *  R  A  S  F  P  L  V  K  R  F  * :   Y  M  E  A  L  V  E  L  V  R  L  P  F  K  W  L  S  A  L  E  S  K  F  S  S  Q  Q  :  E  V  R  K  N  F  P  H  A  K  N  S  G  L  M  F  A  S  I  T  R  L  K  T  L  L  H  A  S  R  K  K  Q  E  G  K  :  V  L  M  S  Y  *  I  I  *  E  V  H  T  S  N  G  T  L  T  A  S  M  L  M  V  G  S  S  L  L  V  L  W  E  E  Q  *  H  K  *  I  L  A  V  C  *  Q  D  A  L  Q  C  R  :  L  L  A  C  V  V  E  A  Q  K  T  K  L  K  L  *  E  K  W  K  K  M  F  G  L  Q  L  Q  Q  G  R  *  N  R  W  C  T  S  T  S  P  *  Q  K  L  L  R  L  T  S  *  W  K  A  A  T  T  L  E  R  F  C  S  L  F  E  C  C  K  R  E  I  F  L  F  L  V  L  K  *  P  V  L  T  A  S  P  S  P  P  P  P  S  K  H  L  L  H  V  H  F  A  M  F  P  I  K  Q  N  L  F  Y  D  F  S  :  K  L  *  </first_frame>
            <second_frame>  R  A  F  K  N  K  N  G  N  K  I  Q  E  S  R  V  N  L  S  N  S  L  S  K  T  L  L  T  Q  *  V  K  L  I  V  I  K  D  E  G  C  C  N  H  K  P  W  W  S  R  S  V  E  A  S  R  S  G  R  P  T  N  *  R  *  *  N  L  D  *  D  S  S  Y  C  P  *  *  S  *  Y  P  S  T  P  R  *  I  P  T  P  *  R  R  Q  *  I  P  R  S  *  M  F  W  N  C  *  S  S  R  Q  G  S  Y  S  L  E  N  W  *  S   : G  M  C  S  H  W  W  R  W  L  C  G  E  S  S  C  T  Y  W  T  S  S  S  Y  S  I  R  C  V  F  T  R  C  G  *  L  S  *  S  G  V  H  C  L  V  D  H  F  H  D  E  Q  A  F  L  W  *  N  V  S   : D  T  W  R  L  *  W  N  W  Y  V  C  H  S  N  G  *  V  P  W  S  Q  S  F  H  H  S  R :   K  *  G  K  T  F  R  M  Q  R  T  R  G  *  C  L  H  Q  L  Q  D  *  R  L  C  Y  T  H  Q  G  R  N  R  R  E  R :   C  *  C  H  T  R  *  Y  R  R  F  I  L  P  T  E  P  *  Q  P  Q  C  *  W  *  A  L  H  Y  W  F  Y  G  R  N  S  D  T  S  K  S  W  L  F  V  S  K  T  P  Y  S  A  G :   C  W  L  A  *  *  K  P  K  K  Q  S  S  N  C  E  R  S  G  K  K  C  L  A  C  N  C  S  R  E  G  E  T  G  G  V  Q  V  L  P  L  S  R  S  C  *  G  S  P  V  N  G  K  Q  Q  P  H  W  K  D  S  A  H  C  L  N  V  V  K  E  R  F  S  C  S  *  C  *  N  S  L  Y  L  Q  P  V  P  P  P  P  P  P  P  N  I  C  C  M  Y  T  L  Q  C  F  Q  *  S  K  T  F  F  M  I  S  Q :   N  Y  R </second_frame>
            <third_frame>   E  R  S  R  T  R  M  E  T  K  Y  K  K  V  V  *  T  S  P  T  L  F  P  K  P  C  *  L  S  E  *  N  *  L  *  L  R  M  K  A  V  V  I  T  S  P  G  G  P  E  V  L  K  L  Q  E  V  E  D  P  Q  I  K  D  D  E  I  L  I  K  I  A  A  T  A  L  N  R  A  D  T  L  Q  R  Q  G  K  Y  P  P  P  K  G  D  S  E  Y  P  G  L  E  C  S  G  T  V  E  A  V  G  K  E  V  T  R  W  K  I  G  D  Q  :  V  C  A  L  I  G  G  G  G  Y  A  E  K  V  A  V  P  T  G  Q  V  L  P  I  P  S  G  V  S  L  Q  D  A  A  S  F  P  E  V  V  C  T  V  W  S  T  I  F  M  T  S  K  L  S  S  G  E  T  F  L  :  I  H  G  G  S  S  G  I  G  T  F  A  I  Q  M  A  K  C  L  G  V  K  V  F  I  T  A   : G  S  E  E  K  L  S  A  C  K  E  L  G  A  D  V  C  I  N  Y  K  T  E  D  F  V  T  R  I  K  E  E  T  G  G  K   : G  V  D  V  I  L  D  N  I  G  G  S  Y  F  Q  R  N  L  D  S  L  N  V  D  G  R  L  F  I  I  G  F  M  G  G  T  V  T  Q  V  N  L  G  C  L  L  A  R  R  L  T  V  Q   : A  A  G  L  R  S  R  S  P  K  N  K  A  Q  I  V  R  E  V  E  K  N  V  W  P  A  I  A  A  G  K  V  K  P  V  V  Y  K  Y  F  P  L  A  E  A  A  E  A  H  Q  L  M  E  S  S  N  H  I  G  K  I  L  L  T  V  *  M  L  *  K  R  D  F  L  V  L  S  V  K  I  A  C  T  Y  S  Q  S  L  P  P  P  P  L  Q  T  S  A  A  C  T  L  C  N  V  S  N  K  A  K  P  F  L  *  F  L   : K  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109374" stop="109631"/>
                    <exon start="110776" stop="110955"/>
                    <exon start="111163" stop="111244"/>
                    <exon start="111317" stop="111424"/>
                    <exon start="111673" stop="111831"/>
                    <exon start="113246" stop="113442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRMKAVVITSPGGPEVLKLQEVEDPQIKDDEILIKIAATALNRADTLQRQGKYPPPKGDSEYPGLECSGTVEAVGKEVTRWKIGDQVCALIGGGGYAEKVAVPTGQVLPIPSGVSLQDAASFPEVVCTVWSTIFMTSKLSSGETFLIHGGSSGIGTFAIQMAKCLGVKVFITAGSEEKLSACKELGADVCINYKTEDFVTRIKEETGGKGVDVILDNIGGSYFQRNLDSLNVDGRLFIIGFMGGTVTQVNLGCLLARRLTVQAAGLRSRSPKNKAQIVREVEKNVWPAIAAGKVKPVVYKYFPLAEAAEAHQLMESSNHIGKILLTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111158" e_stop="111244"/>
            <exon e_start="111317" e_stop="111424"/>
            <exon e_start="111673" e_stop="111831"/>
            <exon e_start="113246" e_stop="113590"/>
            <exon e_start="113831" e_stop="113840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.911" e_score="0.989"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.915" e_score="0.994"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="111158" e_stop="111244" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.911">
            <gDNA_intron_boundary i_start="111245" i_stop="111316" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111317" e_stop="111424" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111425" i_stop="111672" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111673" e_stop="111831" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111832" i_stop="113245" i_length="1414"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="113246" e_stop="113590" e_length="345"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="113591" i_stop="113830" i_length="240"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="113831" e_stop="113840" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111158" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111158" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111158" stop="111244"/>
              <exon start="111317" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111362" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111419" stop="111424"/>
              <exon start="111673" stop="111831"/>
              <exon start="113246" stop="113590"/>
              <exon start="113831" stop="113840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGATACATGGAGGCTCTAGTGGAATTGGTACGTTTGCCATTCAAATGGCTAAGTGCCTTGGAGTCAAAGTTTTCATCACAGCAG : GAAGTGAGGAAAAACTTTCCGCATGCAAAGAACTCGGGGCTGATGTTTGCATCAATTACAAGACTGAAGACTTTGTTACACGCATCAAGGAAGAAACAGGAGGGAAAG : GTGTTGATGTCATACTAGATAATATAGGAGGTTCATACTTCCAACGGAACCTTGACAGCCTCAATGTTGATGGTAGGCTCTTCATTATTGGTTTTATGGGAGGAACAGTGACACAAGTAAATCTTGGCTGTTTGTTAGCAAGACGCCTTACAGTGCAGG : CTGCTGGCTTGCGTAGTAGAAGCCCAAAAAACAAAGCTCAAATTGTGAGAGAAGTGGAAAAAAATGTTTGGCCTGCAATTGCAGCAGGGAAGGTGAAACCGGTGGTGTACAAGTACTTCCCCTTAGCAGAAGCTGCTGAGGCTCACCAGTTAATGGAAAGCAGCAACCACATTGGAAAGATTCTGCTCACTGTTTGAATGTTGTAAAAGAGAGATTTTCTTGTTCTTAGTGTTAAAATAGCCTGTACTTACAGCCAGTCCCTCCCCCCCCCCCCCCTCCAAACATCTGCTGCATGTACACTTTGCAATGTTTCCAATAAAGCAAAACCTTTTTTATGATTTCTCA : AAACTATAGA</gDNA_template>
            <first_frame> F  R  Y  M  E  A  L  V  E  L  V  R  L  P  F  K  W  L  S  A  L  E  S  K  F  S  S  Q  Q  :  E  V  R  K  N  F  P  H  A  K  N  S  G  L  M  F  A  S  I  T  R  L  K  T  L  L  H  A  S  R  K  K  Q  E  G  K  :  V  L  M  S  Y  *  I  I  *  E  V  H  T  S  N  G  T  L  T  A  S  M  L  M  V  G  S  S  L  L  V  L  W  E  E  Q  *  H  K  *  I  L  A  V  C  *  Q  D  A  L  Q  C  R  :  L  L  A  C  V  V  E  A  Q  K  T  K  L  K  L  *  E  K  W  K  K  M  F  G  L  Q  L  Q  Q  G  R  *  N  R  W  C  T  S  T  S  P  *  Q  K  L  L  R  L  T  S  *  W  K  A  A  T  T  L  E  R  F  C  S  L  F  E  C  C  K  R  E  I  F  L  F  L  V  L  K  *  P  V  L  T  A  S  P  S  P  P  P  P  S  K  H  L  L  H  V  H  F  A  M  F  P  I  K  Q  N  L  F  Y  D  F  S  :  K  L  *  </first_frame>
            <second_frame>  S  D  T  W  R  L  *  W  N  W  Y  V  C  H  S  N  G  *  V  P  W  S  Q  S  F  H  H  S  R :   K  *  G  K  T  F  R  M  Q  R  T  R  G  *  C  L  H  Q  L  Q  D  *  R  L  C  Y  T  H  Q  G  R  N  R  R  E  R :   C  *  C  H  T  R  *  Y  R  R  F  I  L  P  T  E  P  *  Q  P  Q  C  *  W  *  A  L  H  Y  W  F  Y  G  R  N  S  D  T  S  K  S  W  L  F  V  S  K  T  P  Y  S  A  G :   C  W  L  A  *  *  K  P  K  K  Q  S  S  N  C  E  R  S  G  K  K  C  L  A  C  N  C  S  R  E  G  E  T  G  G  V  Q  V  L  P  L  S  R  S  C  *  G  S  P  V  N  G  K  Q  Q  P  H  W  K  D  S  A  H  C  L  N  V  V  K  E  R  F  S  C  S  *  C  *  N  S  L  Y  L  Q  P  V  P  P  P  P  P  P  P  N  I  C  C  M  Y  T  L  Q  C  F  Q  *  S  K  T  F  F  M  I  S  Q :   N  Y  R </second_frame>
            <third_frame>   Q  I  H  G  G  S  S  G  I  G  T  F  A  I  Q  M  A  K  C  L  G  V  K  V  F  I  T  A   : G  S  E  E  K  L  S  A  C  K  E  L  G  A  D  V  C  I  N  Y  K  T  E  D  F  V  T  R  I  K  E  E  T  G  G  K   : G  V  D  V  I  L  D  N  I  G  G  S  Y  F  Q  R  N  L  D  S  L  N  V  D  G  R  L  F  I  I  G  F  M  G  G  T  V  T  Q  V  N  L  G  C  L  L  A  R  R  L  T  V  Q   : A  A  G  L  R  S  R  S  P  K  N  K  A  Q  I  V  R  E  V  E  K  N  V  W  P  A  I  A  A  G  K  V  K  P  V  V  Y  K  Y  F  P  L  A  E  A  A  E  A  H  Q  L  M  E  S  S  N  H  I  G  K  I  L  L  T  V  *  M  L  *  K  R  D  F  L  V  L  S  V  K  I  A  C  T  Y  S  Q  S  L  P  P  P  P  L  Q  T  S  A  A  C  T  L  C  N  V  S  N  K  A  K  P  F  L  *  F  L   : K  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111160" stop="111244"/>
                    <exon start="111317" stop="111424"/>
                    <exon start="111673" stop="111831"/>
                    <exon start="113246" stop="113442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHGGSSGIGTFAIQMAKCLGVKVFITAGSEEKLSACKELGADVCINYKTEDFVTRIKEETGGKGVDVILDNIGGSYFQRNLDSLNVDGRLFIIGFMGGTVTQVNLGCLLARRLTVQAAGLRSRSPKNKAQIVREVEKNVWPAIAAGKVKPVVYKYFPLAEAAEAHQLMESSNHIGKILLTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="119919" PGL_stop="111253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119919" e_stop="119748"/>
            <exon e_start="119632" e_stop="119537"/>
            <exon e_start="119358" e_stop="119246"/>
            <exon e_start="119145" e_stop="119079"/>
            <exon e_start="118983" e_stop="118592"/>
            <exon e_start="118395" e_stop="118307"/>
            <exon e_start="118212" e_stop="118107"/>
            <exon e_start="118028" e_stop="117941"/>
            <exon e_start="117836" e_stop="117718"/>
            <exon e_start="117390" e_stop="117226"/>
            <exon e_start="117017" e_stop="116818"/>
            <exon e_start="116620" e_stop="116164"/>
            <exon e_start="116042" e_stop="115938"/>
            <exon e_start="115514" e_stop="115404"/>
            <exon e_start="115217" e_stop="115006"/>
            <exon e_start="114897" e_stop="114570"/>
            <exon e_start="114216" e_stop="113946"/>
            <exon e_start="113726" e_stop="113704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.768" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.785" acc_prob="0.980" e_score="0.962"/>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.442" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="119919" e_stop="119748" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="119747" i_stop="119633" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119632" e_stop="119537" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.768" acc_prob="0.789">
            <gDNA_intron_boundary i_start="119536" i_stop="119359" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119358" e_stop="119246" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.766">
            <gDNA_intron_boundary i_start="119245" i_stop="119146" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119145" e_stop="119079" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="119078" i_stop="118984" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118983" e_stop="118592" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.818">
            <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="118395" e_stop="118307" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="118212" e_stop="118107" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.785" acc_prob="0.980">
            <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118028" e_stop="117941" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="117836" e_stop="117718" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.727">
            <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="117390" e_stop="117226" e_length="165"/>
          </exon>
          <intron i_serial="10" don_prob="0.964" acc_prob="0.825">
            <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="117017" e_stop="116818" e_length="200"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="116620" e_stop="116164" e_length="457"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116163" i_stop="116043" i_length="121"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="116042" e_stop="115938" e_length="105"/>
          </exon>
          <intron i_serial="13" don_prob="0.759" acc_prob="0.936">
            <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="115514" e_stop="115404" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115006" e_length="212"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="114897" e_stop="114570" e_length="328"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="114216" e_stop="113946" e_length="271"/>
          </exon>
          <intron i_serial="17" don_prob="0.442" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113945" i_stop="113727" i_length="219"/>
          </intron>
          <exon e_serial="18" e_score="0.739">
            <gDNA_exon_boundary e_start="113726" e_stop="113704" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119919" stop="119748"/>
              <exon start="119632" stop="119537"/>
              <exon start="119358" stop="119246"/>
              <exon start="119145" stop="119079"/>
              <exon start="118983" stop="118665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118603" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117941"/>
              <exon start="117836" stop="117763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116818"/>
              <exon start="116620" stop="116596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116960" stop="116818"/>
              <exon start="116620" stop="116305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116492" stop="116164"/>
              <exon start="116042" stop="115938"/>
              <exon start="115514" stop="115404"/>
              <exon start="115217" stop="115125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="114090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114663" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114659" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAACTATGGAAAGTAAGAAATTGTTGTTGGTAATAATATTGTCTATGCTTTTAGTTTTTGAAAAAGGGGCGTCGACGACAGTAACTTATGATCACAAGGCATTGGTTATTGATGGAAAGAGGAGAATTTTGCAATCAGGATCAATACATTATCCAAGAACTACACCTGAA : ATATGGCCAGAGATCATTAGAAAGGCTAAGGAAGGCGGATTGGACGTGATAGAGAGTTATGTTTTCTGGAATTATCATGAACCTGTCAAAGGAGAG : TACTACTTTGAAGGCAGGTTTGACCTTGTACGGTTTGTGAAGACAGTACAAGAAGCTGGCCTATACGTGCATCTCCGTATAGGTCCATATGCCTGTGCTGAATGGAACTATGG : GGGCTTCCCTATGTGGCTACACTTTATCCCTGGAATAAAGTTTCGAACAACAAATGAACTTTTTAAG : AATGAAATGAAACTCTTTCTTGCCAAGATTGTTGATCTTATGAAGGATGAGAACCTCTTCGCTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTT : ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG : GTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATG : TATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG : GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG : GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG : GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG : TATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAG : AACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG : GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG : ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT : GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG : GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA : TTGAAGAAAAAAAAAACATGAAA</gDNA_template>
            <first_frame> L  N  Y  G  K  *  E  I  V  V  G  N  N  I  V  Y  A  F  S  F  *  K  R  G  V  D  D  S  N  L  *  S  Q  G  I  G  Y  *  W  K  E  E  N  F  A  I  R  I  N  T  L  S  K  N  Y  T  *   : N  M  A  R  D  H  *  K  G  *  G  R  R  I  G  R  D  R  E  L  C  F  L  E  L  S  *  T  C  Q  R  R   : V  L  L  *  R  Q  V  *  P  C  T  V  C  E  D  S  T  R  S  W  P  I  R  A  S  P  Y  R  S  I  C  L  C  *  M  E  L  W  :  G  L  P  Y  V  A  T  L  Y  P  W  N  K  V  S  N  N  K  *  T  F  *   : E  *  N  E  T  L  S  C  Q  D  C  *  S  Y  E  G  *  E  P  L  R  Y  T  R  R  S  N  H  T  R  S  G  C  F  F  H  L  C  D  D  G  C  L  C  G  S  L  N  L  L  P  *  I  Y  T  L  I  T  *  *  C  T  F  F  F  S  I  L  V  V  A  F  F  V  L  I  S  D  L  S  S  *  Q  V  E  N  E  Y  G  N  V  E  W  A  Y  G  V  S  G  E  L  Y  V  K  W  A  A  E  T  A  V  N  L  N  T  T  V  P  W  V  M  C  A  Q  E  D  A  P  D  S  V  :  I  N  T  C  N  G  F  Y  C  D  R  F  T  P  N  S  L  S  K  P  K  M  W  T  E  N  Y  V  G  W :   F  L  A  F  G  Y  P  V  P  F  R  P  V  E  D  L  A  F  A  V  A  R  F  F  E  T  G  G  T  F  Q  N  Y  Y  M  :  Y  F  G  G  T  N  F  G  R  T  A  G  G  P  L  V  A  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  F  I  S  Q  P  K  W  G  H  L  R  D  L  H  K  A  I  K  H  C  E  E  Y  L  V  N  A  D  P  I  H  L  S  L  G  L  K  L  E  :  A  H  V  Y  Y  K  S  S  N  D  C  A  A  F  L  A  N  Y  G  N  S  S  D  A  N  V  T  F  N  G  K  S  Y  F  L  H  A  W  S  V  S  I  L  P  D  C  K  N  V  I  F  N  T  A  K  :  V  V  S  Q  K  T  T  G  S  T  A  F  T  H  N  T  V  T  I  E  N  S  L  E  S  D  P  W  G  W  Y  Q  E  K  V  G  I  A  N  N  H  S  F  A  S  P  R  L  L  E  Q  I  N  T  T  K  D  T  S  D  F  L  W  Y  T  T  S :   I  N  V  E  E  N  I  K  K  R  K  A  K  E  L  Q  L  M  V  G  S  L  G  H  A  A  L  V  F  V  N  K  K  P  V  G  N  *  L  I  *  S  R  L  L  *  P  C  L  I  T  *  I  G  T  P  I  *  S  *  Q  Q  S  K  S  I  V  F  L  I  G  *  V  F  *  *  G  G  S  H  N  S  T  D  P  R  R  R  L  I  C  F  S  F  Y  L  E  H  Y  L  R  L  Q  R  I  A  K  I  A  D  L  E  P  S  L  G  F  G  Y  G  N  H  D  D  A  S  F  V  L  S  K  K  I  H  L  K  Q  G  N  N  T  V  D  I  L  S  M  M  V  G  L  Q  :  N  Y  G  P  W  F  D  I  S  G  A  G  V  F  S  V  I  F  S  D  L  K  N  S  K  N  F  S  S  T  E  W  I  Y  Q  :  V  G  L  E  G  E  Y  L  G  L  D  K  V  S  L  A  N  S  S  L  W  I  Q  G  S  S  V  P  V  H  Q  S  L  I  W  Y  K  :  T  S  F  S  P  P  E  G  R  G  P  I  S  L  N  L  S  S  M  G  K  G  Q  A  W  V  N  G  Q  H  I  G  R  Y  W  S  S  Y  R  S  P  S  T  G  C  S  D  N  C  D  Y  R  G  A  Y  D  S  W  K  C  L  K  K  C  G  Q  P  A  Q  V  L :   Y  H  V  P  R  S  W  L  K  P  E  K  N  L  L  V  L  H  E  E  L  G  G  D  P  S  K  I  S  F  S  T  R  S  G  Q  T  I  C  A  H  V  S  E  L  D  P  P  P  V  D  T  W  K  T  D  K  D  Q  T  S  Q  E  P  S  L  Q  L  N  C  E  Q  G  W  T  I  T  A  V  N  F  A  S  F  G  T  P  T  G  D  C  G  A  F  I  E  G  S  C  H  W  D  V  L  S  I  V  H  Q  :  G  C  V  G  K  S  G  C  S  I  P  I  T  M  A  K  L  G  D  P  C  P  G  V  Q  K  S  L  A  V  E  A  F  C  S  V  *  I  I  K  F  Y  G  W  C  S  H  *  L  S  V  V  T  F  F  V  K  F  S  A  S  S  N  Q  M  Y  W  S  L  F  *  P  E  P  A  L  L  R  Y  S  P  N  L  D  D  T  K  E  F  I   : I  E  E  K  K  N  M  K </first_frame>
            <second_frame>  *  T  M  E  S  K  K  L  L  L  V  I  I  L  S  M  L  L  V  F  E  K  G  A  S  T  T  V  T  Y  D  H  K  A  L  V  I  D  G  K  R  R  I  L  Q  S  G  S  I  H  Y  P  R  T  T  P  E  :  I  W  P  E  I  I  R  K  A  K  E  G  G  L  D  V  I  E  S  Y  V  F  W  N  Y  H  E  P  V  K  G  E  :  Y  Y  F  E  G  R  F  D  L  V  R  F  V  K  T  V  Q  E  A  G  L  Y  V  H  L  R  I  G  P  Y  A  C  A  E  W  N  Y  G :   G  F  P  M  W  L  H  F  I  P  G  I  K  F  R  T  T  N  E  L  F  K  :  N  E  M  K  L  F  L  A  K  I  V  D  L  M  K  D  E  N  L  F  A  T  Q  G  G  P  I  I  L  A  Q  V  V  S  F  I  F  V  M  M  D  V  F  V  V  V  *  I  F  F  L  E  S  T  L  L  L  L  D  S  A  P  S  S  F  Q  F  *  L  L  H  F  L  C  *  S  V  I  Y  P  L  N  R  *  K  M  S  M  E  M  L  N  G  H  M  E  S  A  E  S  Y  M  *  N  G  L  Q  K  L  L  L  I  L  I  R  P  S  L  G  *  C  V  H  K  K  M  H  L  I  Q  L :   *  T  H  V  M  D  S  I  V  I  A  S  L  Q  I  P  C  P  S  Q  R  C  G  Q  K  T  T  L  D   : G  S  L  H  L  V  I  L  F  L  F  D  L  L  K  T  W  L  L  L  *  H  V  F  L  K  L  V  V  H  F  K  I  I  T  C :   I  L  V  A  P  I  L  V  E  Q  L  E  V  L  *  *  Q  Q  A  T  T  M  M  P  P  *  M  S  M  :  V  S  *  V  S  Q  S  G  A  T  Y  A  I  Y  T  R  L  *  N  T  V  K  N  I  W  S  M  Q  I  Q  F  I  C  P  L  V  *  N  L  R :   H  M  Y  I  T  R  A  P  M  T  V  Q  P  S  L  L  T  M  V  T  V  Q  M  Q  M  L  H  L  M  G  S  H  I  F  F  M  L  G  L  L  A  S  F  Q  T  V  R  M  S  Y  S  T  R  R  R :   L  F  H  K  K  R  Q  E  V  Q  H  L  L  T  T  R  L  L  L  K  I  R  W  S  Q  I  L  G  A  G  T  K  K  K  L  A  S  R  I  I  I  R  L  H  H  R  A  Y  *  S  R  *  I  Q  Q  R  I  P  V  I  S  F  G  I  Q  Q   : V  *  M  W  R  R  T  S  R  R  G  K  P  K  N  C  S  *  W  L  E  A  *  D  M  Q  L  L  F  L  *  T  R  N  Q  L  V  T  S  S  S  N  L  V  F  F  N  R  V  *  *  L  R  *  E  L  Q  F  D  H  N  N  K  V  K  V  *  F  F  *  S  V  K  F  F  D  E  A  V  H  T  T  Q  R  I  Q  E  E  D  *  Y  A  S  V  F  T  L  N  I  T  *  D  Y  R  E  L  L  R  *  L  I  W  S  L  L  *  D  L  A  M  V  I  M  M  M  Q  A  L  C  *  V  R  K  S  I  L  S  K  E  T  T  Q  W  T  Y  *  A  *  W  L  V  C  R :   T  M  D  H  G  L  T  S  L  E  Q  V  Y  F  L  L  S  S  V  I  *  R  I  P  R  I  F  L  L  Q  N  G  S  T  R :   *  V  L  K  V  S  I  L  D  L  I  K  L  V  L  Q  I  V  L  C  G  F  R  G  V  L  S  Q  Y  I  R  V  *  Y  G  T  R :   Q  V  F  L  L  Q  K  E  E  A  L  Y  R  *  I  C  Q  V  W  V  K  V  R  H  G  *  M  G  S  I  *  G  D  T  G  L  L  I  V  H  P  Q  Q  A  V  L  I  I  V  T  T  E  E  L  M  I  H  G  N  V  *  R  N  V  V  N  L  L  K  C   : C  T  M  Y  H  A  V  G  *  S  Q  K  R  T  C  L  C  C  M  K  S  L  V  V  T  L  Q  K  Y  L  S  Q  R  D  L  G  K  Q  F  V  L  M  Y  L  S  *  I  L  H  L  L  I  L  G  R  Q  T  K  I  K  H  L  K  N  L  H  C  N  *  I  V  S  K  D  G  L  S  P  Q  L  T  L  L  A  L  E  L  L  Q  E  I  V  E  H  S  L  K  G  V  A  I  G  M  C  Y  P  *  F  I  R :   G  V  W  A  S  Q  D  V  P  F  L  S  P  W  L  N  L  V  T  H  V  L  E  Y  K  K  V  W  L  L  K  L  F  A  V  F  E  S  S  N  S  M  V  G  V  V  I  S  L  A  W  *  P  S  L  S  N  F  L  L  L  A  I  K  C  T  G  L  C  F  S  Q  S  Q  L  Y  F  G  T  A  L  I  L  M  I  Q  K  S  L  *  :  L  K  K  K  K  T  *   </second_frame>
            <third_frame>   E  L  W  K  V  R  N  C  C  W  *  *  Y  C  L  C  F  *  F  L  K  K  G  R  R  R  Q  *  L  M  I  T  R  H  W  L  L  M  E  R  G  E  F  C  N  Q  D  Q  Y  I  I  Q  E  L  H  L  K :   Y  G  Q  R  S  L  E  R  L  R  K  A  D  W  T  *  *  R  V  M  F  S  G  I  I  M  N  L  S  K  E  S :   T  T  L  K  A  G  L  T  L  Y  G  L  *  R  Q  Y  K  K  L  A  Y  T  C  I  S  V  *  V  H  M  P  V  L  N  G  T  M   : G  A  S  L  C  G  Y  T  L  S  L  E  *  S  F  E  Q  Q  M  N  F  L  R :   M  K  *  N  S  F  L  P  R  L  L  I  L  *  R  M  R  T  S  S  L  H  K  E  V  Q  S  Y  S  L  R  L  F  L  S  S  L  *  *  W  M  S  L  W  *  F  K  S  S  S  L  N  L  H  S  Y  Y  L  I  V  H  L  L  L  F  N  F  S  C  C  I  F  C  V  N  Q  *  S  I  L  L  T  G  R  K  *  V  W  K  C  *  M  G  I  W  S  Q  R  R  A  I  C  K  M  G  C  R  N  C  C  *  S  *  Y  D  R  P  L  G  D  V  C  T  R  R  C  T  *  F  S   : Y  K  H  M  *  W  I  L  L  *  S  L  H  S  K  F  P  V  Q  A  K  D  V  D  R  K  L  R  W  M  :  V  P  C  I  W  L  S  C  S  F  S  T  C  *  R  L  G  F  C  C  S  T  F  F  *  N  W  W  Y  I  S  K  L  L  H   : V  F  W  W  H  Q  F  W  S  N  S  W  R  S  S  S  S  N  K  L  R  L  *  C  P  H  R  *  V  W :   F  H  K  S  A  K  V  G  P  P  T  R  F  T  Q  G  Y  K  T  L  *  R  I  F  G  Q  C  R  S  N  S  F  V  P  W  S  E  T  *   : G  T  C  I  L  Q  E  L  Q  *  L  C  S  L  P  C  *  L  W  *  Q  F  R  C  K  C  Y  I  *  W  E  V  I  F  S  S  C  L  V  C  *  H  P  S  R  L  *  E  C  H  I  Q  H  G  E   : G  C  F  T  K  N  D  R  K  Y  S  I  Y  S  Q  H  G  Y  Y  *  K  F  A  G  V  R  S  L  G  L  V  P  R  K  S  W  H  R  E  *  S  F  V  C  I  T  A  L  T  R  A  D  K  Y  N  K  G  Y  Q  *  F  P  L  V  Y  N  K  :  Y  K  C  G  G  E  H  Q  E  E  E  S  Q  R  I  A  V  N  G  W  K  L  R  T  C  S  S  C  F  C  K  Q  E  T  S  W  *  L  A  H  L  I  S  S  S  L  T  V  F  N  N  L  D  R  N  S  N  L  I  I  T  T  K  *  K  Y  S  F  S  D  R  L  S  F  L  M  R  R  F  T  Q  L  N  G  S  K  K  K  T  N  M  L  Q  F  L  P  *  T  L  L  K  T  T  E  N  C  *  D  S  *  F  G  A  F  F  R  I  W  L  W  *  S  *  *  C  K  L  C  A  K  *  E  N  P  S  *  A  R  K  Q  H  S  G  H  I  E  H  D  G  W  F  A   : E  L  W  T  M  V  *  H  L  W  S  R  C  I  F  C  Y  L  Q  *  F  E  E  F  Q  E  F  F  F  Y  R  M  D  L  P   : G  R  S  *  R  *  V  S  W  T  *  *  S  *  S  C  K  *  F  S  V  D  S  G  E  F  C  P  S  T  S  E  F  D  M  V  Q   : D  K  F  F  S  S  R  R  K  R  P  Y  I  A  K  S  V  K  Y  G  *  R  S  G  M  G  K  W  A  A  Y  R  E  I  L  V  F  L  S  F  T  L  N  R  L  F  *  *  L  *  L  Q  R  S  L  *  F  M  E  M  F  E  E  M  W  S  T  C  S  S  V  :  V  P  C  T  T  Q  L  V  K  A  R  K  E  L  A  C  A  A  *  R  A  W  W  *  P  F  K  N  I  F  L  N  A  I  W  A  N  N  L  C  S  C  I  *  V  R  S  S  T  C  *  Y  L  E  D  R  Q  R  S  N  I  S  R  T  F  I  A  T  E  L  *  A  R  M  D  Y  H  R  S  *  L  C  *  L  W  N  S  Y  R  R  L  W  S  I  H  *  R  E  L  P  L  G  C  V  I  H  S  S  S   : G  V  C  G  Q  V  R  M  F  H  S  Y  H  H  G  *  T  W  *  P  M  S  W  S  T  K  K  S  G  C  *  S  F  L  Q  C  L  N  H  Q  I  L  W  L  V  *  S  L  A  *  R  G  N  L  L  C  Q  I  F  C  F  *  Q  S  N  V  L  V  F  V  L  A  R  A  S  F  T  S  V  Q  P  *  S  *  *  Y  K  R  V  Y  N :   *  R  K  K  K  H  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116391" stop="116164"/>
                    <exon start="116042" stop="115938"/>
                    <exon start="115514" stop="115404"/>
                    <exon start="115217" stop="115006"/>
                    <exon start="114897" stop="114570"/>
                    <exon start="114216" stop="114106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSHNSTDPRRRLICFSFYLEHYLRLQRIAKIADLEPSLGFGYGNHDDASFVLSKKIHLKQGNNTVDILSMMVGLQNYGPWFDISGAGVFSVIFSDLKNSKNFSSTEWIYQVGLEGEYLGLDKVSLANSSLWIQGSSVPVHQSLIWYKTSFSPPEGRGPISLNLSSMGKGQAWVNGQHIGRYWSSYRSPSTGCSDNCDYRGAYDSWKCLKKCGQPAQVLYHVPRSWLKPEKNLLVLHEELGGDPSKISFSTRSGQTICAHVSELDPPPVDTWKTDKDQTSQEPSLQLNCEQGWTITAVNFASFGTPTGDCGAFIEGSCHWDVLSIVHQGCVGKSGCSIPITMAKLGDPCPGVQKSLAVEAFCSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118738" stop="118592"/>
                    <exon start="118395" stop="118307"/>
                    <exon start="118212" stop="118107"/>
                    <exon start="118028" stop="117941"/>
                    <exon start="117836" stop="117718"/>
                    <exon start="117390" stop="117226"/>
                    <exon start="117017" stop="116818"/>
                    <exon start="116620" stop="116506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVENEYGNVEWAYGVSGELYVKWAAETAVNLNTTVPWVMCAQEDAPDSVINTCNGFYCDRFTPNSLSKPKMWTENYVGWFLAFGYPVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFISQPKWGHLRDLHKAIKHCEEYLVNADPIHLSLGLKLEAHVYYKSSNDCAAFLANYGNSSDANVTFNGKSYFLHAWSVSILPDCKNVIFNTAKVVSQKTTGSTAFTHNTVTIENSLESDPWGWYQEKVGIANNHSFASPRLLEQINTTKDTSDFLWYTTSINVEENIKKRKAKELQLMVGSLGHAALVFVNKKPVGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119915" stop="119748"/>
                    <exon start="119632" stop="119537"/>
                    <exon start="119358" stop="119246"/>
                    <exon start="119145" stop="119079"/>
                    <exon start="118983" stop="118843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMESKKLLLVIILSMLLVFEKGASTTVTYDHKALVIDGKRRILQSGSIHYPRTTPEIWPEIIRKAKEGGLDVIESYVFWNYHEPVKGEYYFEGRFDLVRFVKTVQEAGLYVHLRIGPYACAEWNYGGFPMWLHFIPGIKFRTTNELFKNEMKLFLAKIVDLMKDENLFATQGGPIILAQVVSFIFVMMDVFVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="118922" e_stop="118891"/>
            <exon e_start="118735" e_stop="118592"/>
            <exon e_start="118395" e_stop="118307"/>
            <exon e_start="118212" e_stop="118107"/>
            <exon e_start="118028" e_stop="117941"/>
            <exon e_start="117836" e_stop="117718"/>
            <exon e_start="117390" e_stop="117226"/>
            <exon e_start="117017" e_stop="116818"/>
            <exon e_start="116620" e_stop="116164"/>
            <exon e_start="116042" e_stop="115938"/>
            <exon e_start="115514" e_stop="115404"/>
            <exon e_start="115217" e_stop="115006"/>
            <exon e_start="114897" e_stop="114570"/>
            <exon e_start="114216" e_stop="113946"/>
            <exon e_start="113726" e_stop="113704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="0.969"/>
          <exon-intron don_prob="0.293" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.442" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="118922" e_stop="118891" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="118890" i_stop="118736" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118735" e_stop="118592" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.293" acc_prob="0.818">
            <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118395" e_stop="118307" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118212" e_stop="118107" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.785" acc_prob="0.980">
            <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118028" e_stop="117941" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="117836" e_stop="117718" e_length="119"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.727">
            <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="117390" e_stop="117226" e_length="165"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="0.825">
            <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="117017" e_stop="116818" e_length="200"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="116620" e_stop="116164" e_length="457"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116163" i_stop="116043" i_length="121"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="116042" e_stop="115938" e_length="105"/>
          </exon>
          <intron i_serial="10" don_prob="0.759" acc_prob="0.936">
            <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="115514" e_stop="115404" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115006" e_length="212"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="114897" e_stop="114570" e_length="328"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="114216" e_stop="113946" e_length="271"/>
          </exon>
          <intron i_serial="14" don_prob="0.442" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113945" i_stop="113727" i_length="219"/>
          </intron>
          <exon e_serial="15" e_score="0.739">
            <gDNA_exon_boundary e_start="113726" e_stop="113704" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118922" stop="118891"/>
              <exon start="118735" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117941"/>
              <exon start="117836" stop="117777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118603" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117941"/>
              <exon start="117836" stop="117763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116818"/>
              <exon start="116620" stop="116596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116960" stop="116818"/>
              <exon start="116620" stop="116305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116492" stop="116164"/>
              <exon start="116042" stop="115938"/>
              <exon start="115514" stop="115404"/>
              <exon start="115217" stop="115125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="114090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114663" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114659" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACACAAGGAGGTCCAATCATACTCGCTCAG : GTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTT : ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG : GTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATG : TATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG : GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG : GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG : GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG : TATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAG : AACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG : GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG : ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT : GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG : GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA : TTGAAGAAAAAAAAAACATGAAA</gDNA_template>
            <first_frame> L  H  K  E  V  Q  S  Y  S  L  R :   *  K  M  S  M  E  M  L  N  G  H  M  E  S  A  E  S  Y  M  *  N  G  L  Q  K  L  L  L  I  L  I  R  P  S  L  G  *  C  V  H  K  K  M  H  L  I  Q  L :   *  T  H  V  M  D  S  I  V  I  A  S  L  Q  I  P  C  P  S  Q  R  C  G  Q  K  T  T  L  D   : G  S  L  H  L  V  I  L  F  L  F  D  L  L  K  T  W  L  L  L  *  H  V  F  L  K  L  V  V  H  F  K  I  I  T  C :   I  L  V  A  P  I  L  V  E  Q  L  E  V  L  *  *  Q  Q  A  T  T  M  M  P  P  *  M  S  M  :  V  S  *  V  S  Q  S  G  A  T  Y  A  I  Y  T  R  L  *  N  T  V  K  N  I  W  S  M  Q  I  Q  F  I  C  P  L  V  *  N  L  R :   H  M  Y  I  T  R  A  P  M  T  V  Q  P  S  L  L  T  M  V  T  V  Q  M  Q  M  L  H  L  M  G  S  H  I  F  F  M  L  G  L  L  A  S  F  Q  T  V  R  M  S  Y  S  T  R  R  R :   L  F  H  K  K  R  Q  E  V  Q  H  L  L  T  T  R  L  L  L  K  I  R  W  S  Q  I  L  G  A  G  T  K  K  K  L  A  S  R  I  I  I  R  L  H  H  R  A  Y  *  S  R  *  I  Q  Q  R  I  P  V  I  S  F  G  I  Q  Q   : V  *  M  W  R  R  T  S  R  R  G  K  P  K  N  C  S  *  W  L  E  A  *  D  M  Q  L  L  F  L  *  T  R  N  Q  L  V  T  S  S  S  N  L  V  F  F  N  R  V  *  *  L  R  *  E  L  Q  F  D  H  N  N  K  V  K  V  *  F  F  *  S  V  K  F  F  D  E  A  V  H  T  T  Q  R  I  Q  E  E  D  *  Y  A  S  V  F  T  L  N  I  T  *  D  Y  R  E  L  L  R  *  L  I  W  S  L  L  *  D  L  A  M  V  I  M  M  M  Q  A  L  C  *  V  R  K  S  I  L  S  K  E  T  T  Q  W  T  Y  *  A  *  W  L  V  C  R :   T  M  D  H  G  L  T  S  L  E  Q  V  Y  F  L  L  S  S  V  I  *  R  I  P  R  I  F  L  L  Q  N  G  S  T  R :   *  V  L  K  V  S  I  L  D  L  I  K  L  V  L  Q  I  V  L  C  G  F  R  G  V  L  S  Q  Y  I  R  V  *  Y  G  T  R :   Q  V  F  L  L  Q  K  E  E  A  L  Y  R  *  I  C  Q  V  W  V  K  V  R  H  G  *  M  G  S  I  *  G  D  T  G  L  L  I  V  H  P  Q  Q  A  V  L  I  I  V  T  T  E  E  L  M  I  H  G  N  V  *  R  N  V  V  N  L  L  K  C   : C  T  M  Y  H  A  V  G  *  S  Q  K  R  T  C  L  C  C  M  K  S  L  V  V  T  L  Q  K  Y  L  S  Q  R  D  L  G  K  Q  F  V  L  M  Y  L  S  *  I  L  H  L  L  I  L  G  R  Q  T  K  I  K  H  L  K  N  L  H  C  N  *  I  V  S  K  D  G  L  S  P  Q  L  T  L  L  A  L  E  L  L  Q  E  I  V  E  H  S  L  K  G  V  A  I  G  M  C  Y  P  *  F  I  R :   G  V  W  A  S  Q  D  V  P  F  L  S  P  W  L  N  L  V  T  H  V  L  E  Y  K  K  V  W  L  L  K  L  F  A  V  F  E  S  S  N  S  M  V  G  V  V  I  S  L  A  W  *  P  S  L  S  N  F  L  L  L  A  I  K  C  T  G  L  C  F  S  Q  S  Q  L  Y  F  G  T  A  L  I  L  M  I  Q  K  S  L  *  :  L  K  K  K  K  T  *   </first_frame>
            <second_frame>  Y  T  R  R  S  N  H  T  R  S   : G  R  K  *  V  W  K  C  *  M  G  I  W  S  Q  R  R  A  I  C  K  M  G  C  R  N  C  C  *  S  *  Y  D  R  P  L  G  D  V  C  T  R  R  C  T  *  F  S   : Y  K  H  M  *  W  I  L  L  *  S  L  H  S  K  F  P  V  Q  A  K  D  V  D  R  K  L  R  W  M  :  V  P  C  I  W  L  S  C  S  F  S  T  C  *  R  L  G  F  C  C  S  T  F  F  *  N  W  W  Y  I  S  K  L  L  H   : V  F  W  W  H  Q  F  W  S  N  S  W  R  S  S  S  S  N  K  L  R  L  *  C  P  H  R  *  V  W :   F  H  K  S  A  K  V  G  P  P  T  R  F  T  Q  G  Y  K  T  L  *  R  I  F  G  Q  C  R  S  N  S  F  V  P  W  S  E  T  *   : G  T  C  I  L  Q  E  L  Q  *  L  C  S  L  P  C  *  L  W  *  Q  F  R  C  K  C  Y  I  *  W  E  V  I  F  S  S  C  L  V  C  *  H  P  S  R  L  *  E  C  H  I  Q  H  G  E   : G  C  F  T  K  N  D  R  K  Y  S  I  Y  S  Q  H  G  Y  Y  *  K  F  A  G  V  R  S  L  G  L  V  P  R  K  S  W  H  R  E  *  S  F  V  C  I  T  A  L  T  R  A  D  K  Y  N  K  G  Y  Q  *  F  P  L  V  Y  N  K  :  Y  K  C  G  G  E  H  Q  E  E  E  S  Q  R  I  A  V  N  G  W  K  L  R  T  C  S  S  C  F  C  K  Q  E  T  S  W  *  L  A  H  L  I  S  S  S  L  T  V  F  N  N  L  D  R  N  S  N  L  I  I  T  T  K  *  K  Y  S  F  S  D  R  L  S  F  L  M  R  R  F  T  Q  L  N  G  S  K  K  K  T  N  M  L  Q  F  L  P  *  T  L  L  K  T  T  E  N  C  *  D  S  *  F  G  A  F  F  R  I  W  L  W  *  S  *  *  C  K  L  C  A  K  *  E  N  P  S  *  A  R  K  Q  H  S  G  H  I  E  H  D  G  W  F  A   : E  L  W  T  M  V  *  H  L  W  S  R  C  I  F  C  Y  L  Q  *  F  E  E  F  Q  E  F  F  F  Y  R  M  D  L  P   : G  R  S  *  R  *  V  S  W  T  *  *  S  *  S  C  K  *  F  S  V  D  S  G  E  F  C  P  S  T  S  E  F  D  M  V  Q   : D  K  F  F  S  S  R  R  K  R  P  Y  I  A  K  S  V  K  Y  G  *  R  S  G  M  G  K  W  A  A  Y  R  E  I  L  V  F  L  S  F  T  L  N  R  L  F  *  *  L  *  L  Q  R  S  L  *  F  M  E  M  F  E  E  M  W  S  T  C  S  S  V  :  V  P  C  T  T  Q  L  V  K  A  R  K  E  L  A  C  A  A  *  R  A  W  W  *  P  F  K  N  I  F  L  N  A  I  W  A  N  N  L  C  S  C  I  *  V  R  S  S  T  C  *  Y  L  E  D  R  Q  R  S  N  I  S  R  T  F  I  A  T  E  L  *  A  R  M  D  Y  H  R  S  *  L  C  *  L  W  N  S  Y  R  R  L  W  S  I  H  *  R  E  L  P  L  G  C  V  I  H  S  S  S   : G  V  C  G  Q  V  R  M  F  H  S  Y  H  H  G  *  T  W  *  P  M  S  W  S  T  K  K  S  G  C  *  S  F  L  Q  C  L  N  H  Q  I  L  W  L  V  *  S  L  A  *  R  G  N  L  L  C  Q  I  F  C  F  *  Q  S  N  V  L  V  F  V  L  A  R  A  S  F  T  S  V  Q  P  *  S  *  *  Y  K  R  V  Y  N :   *  R  K  K  K  H  E  </second_frame>
            <third_frame>   T  Q  G  G  P  I  I  L  A  Q  :  V  E  N  E  Y  G  N  V  E  W  A  Y  G  V  S  G  E  L  Y  V  K  W  A  A  E  T  A  V  N  L  N  T  T  V  P  W  V  M  C  A  Q  E  D  A  P  D  S  V  :  I  N  T  C  N  G  F  Y  C  D  R  F  T  P  N  S  L  S  K  P  K  M  W  T  E  N  Y  V  G  W :   F  L  A  F  G  Y  P  V  P  F  R  P  V  E  D  L  A  F  A  V  A  R  F  F  E  T  G  G  T  F  Q  N  Y  Y  M  :  Y  F  G  G  T  N  F  G  R  T  A  G  G  P  L  V  A  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  F  I  S  Q  P  K  W  G  H  L  R  D  L  H  K  A  I  K  H  C  E  E  Y  L  V  N  A  D  P  I  H  L  S  L  G  L  K  L  E  :  A  H  V  Y  Y  K  S  S  N  D  C  A  A  F  L  A  N  Y  G  N  S  S  D  A  N  V  T  F  N  G  K  S  Y  F  L  H  A  W  S  V  S  I  L  P  D  C  K  N  V  I  F  N  T  A  K  :  V  V  S  Q  K  T  T  G  S  T  A  F  T  H  N  T  V  T  I  E  N  S  L  E  S  D  P  W  G  W  Y  Q  E  K  V  G  I  A  N  N  H  S  F  A  S  P  R  L  L  E  Q  I  N  T  T  K  D  T  S  D  F  L  W  Y  T  T  S :   I  N  V  E  E  N  I  K  K  R  K  A  K  E  L  Q  L  M  V  G  S  L  G  H  A  A  L  V  F  V  N  K  K  P  V  G  N  *  L  I  *  S  R  L  L  *  P  C  L  I  T  *  I  G  T  P  I  *  S  *  Q  Q  S  K  S  I  V  F  L  I  G  *  V  F  *  *  G  G  S  H  N  S  T  D  P  R  R  R  L  I  C  F  S  F  Y  L  E  H  Y  L  R  L  Q  R  I  A  K  I  A  D  L  E  P  S  L  G  F  G  Y  G  N  H  D  D  A  S  F  V  L  S  K  K  I  H  L  K  Q  G  N  N  T  V  D  I  L  S  M  M  V  G  L  Q  :  N  Y  G  P  W  F  D  I  S  G  A  G  V  F  S  V  I  F  S  D  L  K  N  S  K  N  F  S  S  T  E  W  I  Y  Q  :  V  G  L  E  G  E  Y  L  G  L  D  K  V  S  L  A  N  S  S  L  W  I  Q  G  S  S  V  P  V  H  Q  S  L  I  W  Y  K  :  T  S  F  S  P  P  E  G  R  G  P  I  S  L  N  L  S  S  M  G  K  G  Q  A  W  V  N  G  Q  H  I  G  R  Y  W  S  S  Y  R  S  P  S  T  G  C  S  D  N  C  D  Y  R  G  A  Y  D  S  W  K  C  L  K  K  C  G  Q  P  A  Q  V  L :   Y  H  V  P  R  S  W  L  K  P  E  K  N  L  L  V  L  H  E  E  L  G  G  D  P  S  K  I  S  F  S  T  R  S  G  Q  T  I  C  A  H  V  S  E  L  D  P  P  P  V  D  T  W  K  T  D  K  D  Q  T  S  Q  E  P  S  L  Q  L  N  C  E  Q  G  W  T  I  T  A  V  N  F  A  S  F  G  T  P  T  G  D  C  G  A  F  I  E  G  S  C  H  W  D  V  L  S  I  V  H  Q  :  G  C  V  G  K  S  G  C  S  I  P  I  T  M  A  K  L  G  D  P  C  P  G  V  Q  K  S  L  A  V  E  A  F  C  S  V  *  I  I  K  F  Y  G  W  C  S  H  *  L  S  V  V  T  F  F  V  K  F  S  A  S  S  N  Q  M  Y  W  S  L  F  *  P  E  P  A  L  L  R  Y  S  P  N  L  D  D  T  K  E  F  I   : I  E  E  K  K  N  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116391" stop="116164"/>
                    <exon start="116042" stop="115938"/>
                    <exon start="115514" stop="115404"/>
                    <exon start="115217" stop="115006"/>
                    <exon start="114897" stop="114570"/>
                    <exon start="114216" stop="114106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSHNSTDPRRRLICFSFYLEHYLRLQRIAKIADLEPSLGFGYGNHDDASFVLSKKIHLKQGNNTVDILSMMVGLQNYGPWFDISGAGVFSVIFSDLKNSKNFSSTEWIYQVGLEGEYLGLDKVSLANSSLWIQGSSVPVHQSLIWYKTSFSPPEGRGPISLNLSSMGKGQAWVNGQHIGRYWSSYRSPSTGCSDNCDYRGAYDSWKCLKKCGQPAQVLYHVPRSWLKPEKNLLVLHEELGGDPSKISFSTRSGQTICAHVSELDPPPVDTWKTDKDQTSQEPSLQLNCEQGWTITAVNFASFGTPTGDCGAFIEGSCHWDVLSIVHQGCVGKSGCSIPITMAKLGDPCPGVQKSLAVEAFCSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118920" stop="118891"/>
                    <exon start="118735" stop="118592"/>
                    <exon start="118395" stop="118307"/>
                    <exon start="118212" stop="118107"/>
                    <exon start="118028" stop="117941"/>
                    <exon start="117836" stop="117718"/>
                    <exon start="117390" stop="117226"/>
                    <exon start="117017" stop="116818"/>
                    <exon start="116620" stop="116506"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQGGPIILAQVENEYGNVEWAYGVSGELYVKWAAETAVNLNTTVPWVMCAQEDAPDSVINTCNGFYCDRFTPNSLSKPKMWTENYVGWFLAFGYPVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFISQPKWGHLRDLHKAIKHCEEYLVNADPIHLSLGLKLEAHVYYKSSNDCAAFLANYGNSSDANVTFNGKSYFLHAWSVSILPDCKNVIFNTAKVVSQKTTGSTAFTHNTVTIENSLESDPWGWYQEKVGIANNHSFASPRLLEQINTTKDTSDFLWYTTSINVEENIKKRKAKELQLMVGSLGHAALVFVNKKPVGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119919" e_stop="119748"/>
            <exon e_start="119632" e_stop="119537"/>
            <exon e_start="119358" e_stop="119246"/>
            <exon e_start="119145" e_stop="119079"/>
            <exon e_start="118983" e_stop="118592"/>
            <exon e_start="118395" e_stop="118307"/>
            <exon e_start="118212" e_stop="118107"/>
            <exon e_start="118028" e_stop="117941"/>
            <exon e_start="117836" e_stop="117718"/>
            <exon e_start="117390" e_stop="117226"/>
            <exon e_start="117017" e_stop="116818"/>
            <exon e_start="116620" e_stop="116164"/>
            <exon e_start="116042" e_stop="115938"/>
            <exon e_start="115514" e_stop="115404"/>
            <exon e_start="115217" e_stop="115006"/>
            <exon e_start="114897" e_stop="114570"/>
            <exon e_start="114216" e_stop="113946"/>
            <exon e_start="111275" e_stop="111253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.768" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.785" acc_prob="0.980" e_score="0.962"/>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.442" acc_prob="0.468" e_score="1.000"/>
          <exon-only e_score="0.652"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="119919" e_stop="119748" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="119747" i_stop="119633" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119632" e_stop="119537" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.768" acc_prob="0.789">
            <gDNA_intron_boundary i_start="119536" i_stop="119359" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119358" e_stop="119246" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.766">
            <gDNA_intron_boundary i_start="119245" i_stop="119146" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119145" e_stop="119079" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="119078" i_stop="118984" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118983" e_stop="118592" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.818">
            <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="118395" e_stop="118307" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="118212" e_stop="118107" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.785" acc_prob="0.980">
            <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118028" e_stop="117941" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="117836" e_stop="117718" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.727">
            <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="117390" e_stop="117226" e_length="165"/>
          </exon>
          <intron i_serial="10" don_prob="0.964" acc_prob="0.825">
            <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="117017" e_stop="116818" e_length="200"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="116620" e_stop="116164" e_length="457"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116163" i_stop="116043" i_length="121"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="116042" e_stop="115938" e_length="105"/>
          </exon>
          <intron i_serial="13" don_prob="0.759" acc_prob="0.936">
            <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="115514" e_stop="115404" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115006" e_length="212"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="114897" e_stop="114570" e_length="328"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="114216" e_stop="113946" e_length="271"/>
          </exon>
          <intron i_serial="17" don_prob="0.442" acc_prob="0.468">
            <gDNA_intron_boundary i_start="113945" i_stop="111276" i_length="2670"/>
          </intron>
          <exon e_serial="18" e_score="0.652">
            <gDNA_exon_boundary e_start="111275" e_stop="111253" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119919" stop="119748"/>
              <exon start="119632" stop="119537"/>
              <exon start="119358" stop="119246"/>
              <exon start="119145" stop="119079"/>
              <exon start="118983" stop="118665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118603" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117941"/>
              <exon start="117836" stop="117763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116818"/>
              <exon start="116620" stop="116596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116960" stop="116818"/>
              <exon start="116620" stop="116305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116492" stop="116164"/>
              <exon start="116042" stop="115938"/>
              <exon start="115514" stop="115404"/>
              <exon start="115217" stop="115125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="114090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114216" stop="113946"/>
              <exon start="111275" stop="111253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAACTATGGAAAGTAAGAAATTGTTGTTGGTAATAATATTGTCTATGCTTTTAGTTTTTGAAAAAGGGGCGTCGACGACAGTAACTTATGATCACAAGGCATTGGTTATTGATGGAAAGAGGAGAATTTTGCAATCAGGATCAATACATTATCCAAGAACTACACCTGAA : ATATGGCCAGAGATCATTAGAAAGGCTAAGGAAGGCGGATTGGACGTGATAGAGAGTTATGTTTTCTGGAATTATCATGAACCTGTCAAAGGAGAG : TACTACTTTGAAGGCAGGTTTGACCTTGTACGGTTTGTGAAGACAGTACAAGAAGCTGGCCTATACGTGCATCTCCGTATAGGTCCATATGCCTGTGCTGAATGGAACTATGG : GGGCTTCCCTATGTGGCTACACTTTATCCCTGGAATAAAGTTTCGAACAACAAATGAACTTTTTAAG : AATGAAATGAAACTCTTTCTTGCCAAGATTGTTGATCTTATGAAGGATGAGAACCTCTTCGCTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTT : ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG : GTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATG : TATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG : GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG : GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG : GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG : TATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAG : AACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG : GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG : ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT : GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG : GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA : TTCCATAATAAGATAAGAAATCA</gDNA_template>
            <first_frame> L  N  Y  G  K  *  E  I  V  V  G  N  N  I  V  Y  A  F  S  F  *  K  R  G  V  D  D  S  N  L  *  S  Q  G  I  G  Y  *  W  K  E  E  N  F  A  I  R  I  N  T  L  S  K  N  Y  T  *   : N  M  A  R  D  H  *  K  G  *  G  R  R  I  G  R  D  R  E  L  C  F  L  E  L  S  *  T  C  Q  R  R   : V  L  L  *  R  Q  V  *  P  C  T  V  C  E  D  S  T  R  S  W  P  I  R  A  S  P  Y  R  S  I  C  L  C  *  M  E  L  W  :  G  L  P  Y  V  A  T  L  Y  P  W  N  K  V  S  N  N  K  *  T  F  *   : E  *  N  E  T  L  S  C  Q  D  C  *  S  Y  E  G  *  E  P  L  R  Y  T  R  R  S  N  H  T  R  S  G  C  F  F  H  L  C  D  D  G  C  L  C  G  S  L  N  L  L  P  *  I  Y  T  L  I  T  *  *  C  T  F  F  F  S  I  L  V  V  A  F  F  V  L  I  S  D  L  S  S  *  Q  V  E  N  E  Y  G  N  V  E  W  A  Y  G  V  S  G  E  L  Y  V  K  W  A  A  E  T  A  V  N  L  N  T  T  V  P  W  V  M  C  A  Q  E  D  A  P  D  S  V  :  I  N  T  C  N  G  F  Y  C  D  R  F  T  P  N  S  L  S  K  P  K  M  W  T  E  N  Y  V  G  W :   F  L  A  F  G  Y  P  V  P  F  R  P  V  E  D  L  A  F  A  V  A  R  F  F  E  T  G  G  T  F  Q  N  Y  Y  M  :  Y  F  G  G  T  N  F  G  R  T  A  G  G  P  L  V  A  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  F  I  S  Q  P  K  W  G  H  L  R  D  L  H  K  A  I  K  H  C  E  E  Y  L  V  N  A  D  P  I  H  L  S  L  G  L  K  L  E  :  A  H  V  Y  Y  K  S  S  N  D  C  A  A  F  L  A  N  Y  G  N  S  S  D  A  N  V  T  F  N  G  K  S  Y  F  L  H  A  W  S  V  S  I  L  P  D  C  K  N  V  I  F  N  T  A  K  :  V  V  S  Q  K  T  T  G  S  T  A  F  T  H  N  T  V  T  I  E  N  S  L  E  S  D  P  W  G  W  Y  Q  E  K  V  G  I  A  N  N  H  S  F  A  S  P  R  L  L  E  Q  I  N  T  T  K  D  T  S  D  F  L  W  Y  T  T  S :   I  N  V  E  E  N  I  K  K  R  K  A  K  E  L  Q  L  M  V  G  S  L  G  H  A  A  L  V  F  V  N  K  K  P  V  G  N  *  L  I  *  S  R  L  L  *  P  C  L  I  T  *  I  G  T  P  I  *  S  *  Q  Q  S  K  S  I  V  F  L  I  G  *  V  F  *  *  G  G  S  H  N  S  T  D  P  R  R  R  L  I  C  F  S  F  Y  L  E  H  Y  L  R  L  Q  R  I  A  K  I  A  D  L  E  P  S  L  G  F  G  Y  G  N  H  D  D  A  S  F  V  L  S  K  K  I  H  L  K  Q  G  N  N  T  V  D  I  L  S  M  M  V  G  L  Q  :  N  Y  G  P  W  F  D  I  S  G  A  G  V  F  S  V  I  F  S  D  L  K  N  S  K  N  F  S  S  T  E  W  I  Y  Q  :  V  G  L  E  G  E  Y  L  G  L  D  K  V  S  L  A  N  S  S  L  W  I  Q  G  S  S  V  P  V  H  Q  S  L  I  W  Y  K  :  T  S  F  S  P  P  E  G  R  G  P  I  S  L  N  L  S  S  M  G  K  G  Q  A  W  V  N  G  Q  H  I  G  R  Y  W  S  S  Y  R  S  P  S  T  G  C  S  D  N  C  D  Y  R  G  A  Y  D  S  W  K  C  L  K  K  C  G  Q  P  A  Q  V  L :   Y  H  V  P  R  S  W  L  K  P  E  K  N  L  L  V  L  H  E  E  L  G  G  D  P  S  K  I  S  F  S  T  R  S  G  Q  T  I  C  A  H  V  S  E  L  D  P  P  P  V  D  T  W  K  T  D  K  D  Q  T  S  Q  E  P  S  L  Q  L  N  C  E  Q  G  W  T  I  T  A  V  N  F  A  S  F  G  T  P  T  G  D  C  G  A  F  I  E  G  S  C  H  W  D  V  L  S  I  V  H  Q  :  G  C  V  G  K  S  G  C  S  I  P  I  T  M  A  K  L  G  D  P  C  P  G  V  Q  K  S  L  A  V  E  A  F  C  S  V  *  I  I  K  F  Y  G  W  C  S  H  *  L  S  V  V  T  F  F  V  K  F  S  A  S  S  N  Q  M  Y  W  S  L  F  *  P  E  P  A  L  L  R  Y  S  P  N  L  D  D  T  K  E  F  I   : I  P  *  *  D  K  K  S </first_frame>
            <second_frame>  *  T  M  E  S  K  K  L  L  L  V  I  I  L  S  M  L  L  V  F  E  K  G  A  S  T  T  V  T  Y  D  H  K  A  L  V  I  D  G  K  R  R  I  L  Q  S  G  S  I  H  Y  P  R  T  T  P  E  :  I  W  P  E  I  I  R  K  A  K  E  G  G  L  D  V  I  E  S  Y  V  F  W  N  Y  H  E  P  V  K  G  E  :  Y  Y  F  E  G  R  F  D  L  V  R  F  V  K  T  V  Q  E  A  G  L  Y  V  H  L  R  I  G  P  Y  A  C  A  E  W  N  Y  G :   G  F  P  M  W  L  H  F  I  P  G  I  K  F  R  T  T  N  E  L  F  K  :  N  E  M  K  L  F  L  A  K  I  V  D  L  M  K  D  E  N  L  F  A  T  Q  G  G  P  I  I  L  A  Q  V  V  S  F  I  F  V  M  M  D  V  F  V  V  V  *  I  F  F  L  E  S  T  L  L  L  L  D  S  A  P  S  S  F  Q  F  *  L  L  H  F  L  C  *  S  V  I  Y  P  L  N  R  *  K  M  S  M  E  M  L  N  G  H  M  E  S  A  E  S  Y  M  *  N  G  L  Q  K  L  L  L  I  L  I  R  P  S  L  G  *  C  V  H  K  K  M  H  L  I  Q  L :   *  T  H  V  M  D  S  I  V  I  A  S  L  Q  I  P  C  P  S  Q  R  C  G  Q  K  T  T  L  D   : G  S  L  H  L  V  I  L  F  L  F  D  L  L  K  T  W  L  L  L  *  H  V  F  L  K  L  V  V  H  F  K  I  I  T  C :   I  L  V  A  P  I  L  V  E  Q  L  E  V  L  *  *  Q  Q  A  T  T  M  M  P  P  *  M  S  M  :  V  S  *  V  S  Q  S  G  A  T  Y  A  I  Y  T  R  L  *  N  T  V  K  N  I  W  S  M  Q  I  Q  F  I  C  P  L  V  *  N  L  R :   H  M  Y  I  T  R  A  P  M  T  V  Q  P  S  L  L  T  M  V  T  V  Q  M  Q  M  L  H  L  M  G  S  H  I  F  F  M  L  G  L  L  A  S  F  Q  T  V  R  M  S  Y  S  T  R  R  R :   L  F  H  K  K  R  Q  E  V  Q  H  L  L  T  T  R  L  L  L  K  I  R  W  S  Q  I  L  G  A  G  T  K  K  K  L  A  S  R  I  I  I  R  L  H  H  R  A  Y  *  S  R  *  I  Q  Q  R  I  P  V  I  S  F  G  I  Q  Q   : V  *  M  W  R  R  T  S  R  R  G  K  P  K  N  C  S  *  W  L  E  A  *  D  M  Q  L  L  F  L  *  T  R  N  Q  L  V  T  S  S  S  N  L  V  F  F  N  R  V  *  *  L  R  *  E  L  Q  F  D  H  N  N  K  V  K  V  *  F  F  *  S  V  K  F  F  D  E  A  V  H  T  T  Q  R  I  Q  E  E  D  *  Y  A  S  V  F  T  L  N  I  T  *  D  Y  R  E  L  L  R  *  L  I  W  S  L  L  *  D  L  A  M  V  I  M  M  M  Q  A  L  C  *  V  R  K  S  I  L  S  K  E  T  T  Q  W  T  Y  *  A  *  W  L  V  C  R :   T  M  D  H  G  L  T  S  L  E  Q  V  Y  F  L  L  S  S  V  I  *  R  I  P  R  I  F  L  L  Q  N  G  S  T  R :   *  V  L  K  V  S  I  L  D  L  I  K  L  V  L  Q  I  V  L  C  G  F  R  G  V  L  S  Q  Y  I  R  V  *  Y  G  T  R :   Q  V  F  L  L  Q  K  E  E  A  L  Y  R  *  I  C  Q  V  W  V  K  V  R  H  G  *  M  G  S  I  *  G  D  T  G  L  L  I  V  H  P  Q  Q  A  V  L  I  I  V  T  T  E  E  L  M  I  H  G  N  V  *  R  N  V  V  N  L  L  K  C   : C  T  M  Y  H  A  V  G  *  S  Q  K  R  T  C  L  C  C  M  K  S  L  V  V  T  L  Q  K  Y  L  S  Q  R  D  L  G  K  Q  F  V  L  M  Y  L  S  *  I  L  H  L  L  I  L  G  R  Q  T  K  I  K  H  L  K  N  L  H  C  N  *  I  V  S  K  D  G  L  S  P  Q  L  T  L  L  A  L  E  L  L  Q  E  I  V  E  H  S  L  K  G  V  A  I  G  M  C  Y  P  *  F  I  R :   G  V  W  A  S  Q  D  V  P  F  L  S  P  W  L  N  L  V  T  H  V  L  E  Y  K  K  V  W  L  L  K  L  F  A  V  F  E  S  S  N  S  M  V  G  V  V  I  S  L  A  W  *  P  S  L  S  N  F  L  L  L  A  I  K  C  T  G  L  C  F  S  Q  S  Q  L  Y  F  G  T  A  L  I  L  M  I  Q  K  S  L  *  :  F  H  N  K  I  R  N   </second_frame>
            <third_frame>   E  L  W  K  V  R  N  C  C  W  *  *  Y  C  L  C  F  *  F  L  K  K  G  R  R  R  Q  *  L  M  I  T  R  H  W  L  L  M  E  R  G  E  F  C  N  Q  D  Q  Y  I  I  Q  E  L  H  L  K :   Y  G  Q  R  S  L  E  R  L  R  K  A  D  W  T  *  *  R  V  M  F  S  G  I  I  M  N  L  S  K  E  S :   T  T  L  K  A  G  L  T  L  Y  G  L  *  R  Q  Y  K  K  L  A  Y  T  C  I  S  V  *  V  H  M  P  V  L  N  G  T  M   : G  A  S  L  C  G  Y  T  L  S  L  E  *  S  F  E  Q  Q  M  N  F  L  R :   M  K  *  N  S  F  L  P  R  L  L  I  L  *  R  M  R  T  S  S  L  H  K  E  V  Q  S  Y  S  L  R  L  F  L  S  S  L  *  *  W  M  S  L  W  *  F  K  S  S  S  L  N  L  H  S  Y  Y  L  I  V  H  L  L  L  F  N  F  S  C  C  I  F  C  V  N  Q  *  S  I  L  L  T  G  R  K  *  V  W  K  C  *  M  G  I  W  S  Q  R  R  A  I  C  K  M  G  C  R  N  C  C  *  S  *  Y  D  R  P  L  G  D  V  C  T  R  R  C  T  *  F  S   : Y  K  H  M  *  W  I  L  L  *  S  L  H  S  K  F  P  V  Q  A  K  D  V  D  R  K  L  R  W  M  :  V  P  C  I  W  L  S  C  S  F  S  T  C  *  R  L  G  F  C  C  S  T  F  F  *  N  W  W  Y  I  S  K  L  L  H   : V  F  W  W  H  Q  F  W  S  N  S  W  R  S  S  S  S  N  K  L  R  L  *  C  P  H  R  *  V  W :   F  H  K  S  A  K  V  G  P  P  T  R  F  T  Q  G  Y  K  T  L  *  R  I  F  G  Q  C  R  S  N  S  F  V  P  W  S  E  T  *   : G  T  C  I  L  Q  E  L  Q  *  L  C  S  L  P  C  *  L  W  *  Q  F  R  C  K  C  Y  I  *  W  E  V  I  F  S  S  C  L  V  C  *  H  P  S  R  L  *  E  C  H  I  Q  H  G  E   : G  C  F  T  K  N  D  R  K  Y  S  I  Y  S  Q  H  G  Y  Y  *  K  F  A  G  V  R  S  L  G  L  V  P  R  K  S  W  H  R  E  *  S  F  V  C  I  T  A  L  T  R  A  D  K  Y  N  K  G  Y  Q  *  F  P  L  V  Y  N  K  :  Y  K  C  G  G  E  H  Q  E  E  E  S  Q  R  I  A  V  N  G  W  K  L  R  T  C  S  S  C  F  C  K  Q  E  T  S  W  *  L  A  H  L  I  S  S  S  L  T  V  F  N  N  L  D  R  N  S  N  L  I  I  T  T  K  *  K  Y  S  F  S  D  R  L  S  F  L  M  R  R  F  T  Q  L  N  G  S  K  K  K  T  N  M  L  Q  F  L  P  *  T  L  L  K  T  T  E  N  C  *  D  S  *  F  G  A  F  F  R  I  W  L  W  *  S  *  *  C  K  L  C  A  K  *  E  N  P  S  *  A  R  K  Q  H  S  G  H  I  E  H  D  G  W  F  A   : E  L  W  T  M  V  *  H  L  W  S  R  C  I  F  C  Y  L  Q  *  F  E  E  F  Q  E  F  F  F  Y  R  M  D  L  P   : G  R  S  *  R  *  V  S  W  T  *  *  S  *  S  C  K  *  F  S  V  D  S  G  E  F  C  P  S  T  S  E  F  D  M  V  Q   : D  K  F  F  S  S  R  R  K  R  P  Y  I  A  K  S  V  K  Y  G  *  R  S  G  M  G  K  W  A  A  Y  R  E  I  L  V  F  L  S  F  T  L  N  R  L  F  *  *  L  *  L  Q  R  S  L  *  F  M  E  M  F  E  E  M  W  S  T  C  S  S  V  :  V  P  C  T  T  Q  L  V  K  A  R  K  E  L  A  C  A  A  *  R  A  W  W  *  P  F  K  N  I  F  L  N  A  I  W  A  N  N  L  C  S  C  I  *  V  R  S  S  T  C  *  Y  L  E  D  R  Q  R  S  N  I  S  R  T  F  I  A  T  E  L  *  A  R  M  D  Y  H  R  S  *  L  C  *  L  W  N  S  Y  R  R  L  W  S  I  H  *  R  E  L  P  L  G  C  V  I  H  S  S  S   : G  V  C  G  Q  V  R  M  F  H  S  Y  H  H  G  *  T  W  *  P  M  S  W  S  T  K  K  S  G  C  *  S  F  L  Q  C  L  N  H  Q  I  L  W  L  V  *  S  L  A  *  R  G  N  L  L  C  Q  I  F  C  F  *  Q  S  N  V  L  V  F  V  L  A  R  A  S  F  T  S  V  Q  P  *  S  *  *  Y  K  R  V  Y  N :   S  I  I  R  *  E  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116391" stop="116164"/>
                    <exon start="116042" stop="115938"/>
                    <exon start="115514" stop="115404"/>
                    <exon start="115217" stop="115006"/>
                    <exon start="114897" stop="114570"/>
                    <exon start="114216" stop="114106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSHNSTDPRRRLICFSFYLEHYLRLQRIAKIADLEPSLGFGYGNHDDASFVLSKKIHLKQGNNTVDILSMMVGLQNYGPWFDISGAGVFSVIFSDLKNSKNFSSTEWIYQVGLEGEYLGLDKVSLANSSLWIQGSSVPVHQSLIWYKTSFSPPEGRGPISLNLSSMGKGQAWVNGQHIGRYWSSYRSPSTGCSDNCDYRGAYDSWKCLKKCGQPAQVLYHVPRSWLKPEKNLLVLHEELGGDPSKISFSTRSGQTICAHVSELDPPPVDTWKTDKDQTSQEPSLQLNCEQGWTITAVNFASFGTPTGDCGAFIEGSCHWDVLSIVHQGCVGKSGCSIPITMAKLGDPCPGVQKSLAVEAFCSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118738" stop="118592"/>
                    <exon start="118395" stop="118307"/>
                    <exon start="118212" stop="118107"/>
                    <exon start="118028" stop="117941"/>
                    <exon start="117836" stop="117718"/>
                    <exon start="117390" stop="117226"/>
                    <exon start="117017" stop="116818"/>
                    <exon start="116620" stop="116506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVENEYGNVEWAYGVSGELYVKWAAETAVNLNTTVPWVMCAQEDAPDSVINTCNGFYCDRFTPNSLSKPKMWTENYVGWFLAFGYPVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFISQPKWGHLRDLHKAIKHCEEYLVNADPIHLSLGLKLEAHVYYKSSNDCAAFLANYGNSSDANVTFNGKSYFLHAWSVSILPDCKNVIFNTAKVVSQKTTGSTAFTHNTVTIENSLESDPWGWYQEKVGIANNHSFASPRLLEQINTTKDTSDFLWYTTSINVEENIKKRKAKELQLMVGSLGHAALVFVNKKPVGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119915" stop="119748"/>
                    <exon start="119632" stop="119537"/>
                    <exon start="119358" stop="119246"/>
                    <exon start="119145" stop="119079"/>
                    <exon start="118983" stop="118843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMESKKLLLVIILSMLLVFEKGASTTVTYDHKALVIDGKRRILQSGSIHYPRTTPEIWPEIIRKAKEGGLDVIESYVFWNYHEPVKGEYYFEGRFDLVRFVKTVQEAGLYVHLRIGPYACAEWNYGGFPMWLHFIPGIKFRTTNELFKNEMKLFLAKIVDLMKDENLFATQGGPIILAQVVSFIFVMMDVFVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="119919" e_stop="119748"/>
            <exon e_start="119632" e_stop="119537"/>
            <exon e_start="119358" e_stop="119246"/>
            <exon e_start="119145" e_stop="119079"/>
            <exon e_start="118983" e_stop="118592"/>
            <exon e_start="118395" e_stop="118307"/>
            <exon e_start="118212" e_stop="118107"/>
            <exon e_start="118028" e_stop="117941"/>
            <exon e_start="117836" e_stop="117718"/>
            <exon e_start="117390" e_stop="117226"/>
            <exon e_start="117017" e_stop="116818"/>
            <exon e_start="116620" e_stop="116164"/>
            <exon e_start="116042" e_stop="115938"/>
            <exon e_start="115514" e_stop="115404"/>
            <exon e_start="115217" e_stop="115006"/>
            <exon e_start="114897" e_stop="114570"/>
            <exon e_start="114216" e_stop="113946"/>
            <exon e_start="113724" e_stop="113703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.768" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.766" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.293" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.785" acc_prob="0.980" e_score="0.962"/>
          <exon-intron don_prob="0.880" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.727" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.442" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="119919" e_stop="119748" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.989">
            <gDNA_intron_boundary i_start="119747" i_stop="119633" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119632" e_stop="119537" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.768" acc_prob="0.789">
            <gDNA_intron_boundary i_start="119536" i_stop="119359" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119358" e_stop="119246" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.766">
            <gDNA_intron_boundary i_start="119245" i_stop="119146" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="119145" e_stop="119079" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="119078" i_stop="118984" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="118983" e_stop="118592" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.293" acc_prob="0.818">
            <gDNA_intron_boundary i_start="118591" i_stop="118396" i_length="196"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="118395" e_stop="118307" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="118306" i_stop="118213" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.962">
            <gDNA_exon_boundary e_start="118212" e_stop="118107" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.785" acc_prob="0.980">
            <gDNA_intron_boundary i_start="118106" i_stop="118029" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="118028" e_stop="117941" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.880" acc_prob="0.997">
            <gDNA_intron_boundary i_start="117940" i_stop="117837" i_length="104"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="117836" e_stop="117718" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.957" acc_prob="0.727">
            <gDNA_intron_boundary i_start="117717" i_stop="117391" i_length="327"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="117390" e_stop="117226" e_length="165"/>
          </exon>
          <intron i_serial="10" don_prob="0.964" acc_prob="0.825">
            <gDNA_intron_boundary i_start="117225" i_stop="117018" i_length="208"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="117017" e_stop="116818" e_length="200"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="116817" i_stop="116621" i_length="197"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="116620" e_stop="116164" e_length="457"/>
          </exon>
          <intron i_serial="12" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="116163" i_stop="116043" i_length="121"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="116042" e_stop="115938" e_length="105"/>
          </exon>
          <intron i_serial="13" don_prob="0.759" acc_prob="0.936">
            <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="115514" e_stop="115404" e_length="111"/>
          </exon>
          <intron i_serial="14" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115006" e_length="212"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="114897" e_stop="114570" e_length="328"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="114216" e_stop="113946" e_length="271"/>
          </exon>
          <intron i_serial="17" don_prob="0.442" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113945" i_stop="113725" i_length="221"/>
          </intron>
          <exon e_serial="18" e_score="0.727">
            <gDNA_exon_boundary e_start="113724" e_stop="113703" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119919" stop="119748"/>
              <exon start="119632" stop="119537"/>
              <exon start="119358" stop="119246"/>
              <exon start="119145" stop="119079"/>
              <exon start="118983" stop="118665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118678" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118603" stop="118592"/>
              <exon start="118395" stop="118307"/>
              <exon start="118212" stop="118107"/>
              <exon start="118028" stop="117941"/>
              <exon start="117836" stop="117763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116818"/>
              <exon start="116620" stop="116596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118013" stop="117941"/>
              <exon start="117836" stop="117718"/>
              <exon start="117390" stop="117226"/>
              <exon start="117017" stop="116862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116960" stop="116818"/>
              <exon start="116620" stop="116305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116492" stop="116164"/>
              <exon start="116042" stop="115938"/>
              <exon start="115514" stop="115404"/>
              <exon start="115217" stop="115125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="114090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114663" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113724" stop="113703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAACTATGGAAAGTAAGAAATTGTTGTTGGTAATAATATTGTCTATGCTTTTAGTTTTTGAAAAAGGGGCGTCGACGACAGTAACTTATGATCACAAGGCATTGGTTATTGATGGAAAGAGGAGAATTTTGCAATCAGGATCAATACATTATCCAAGAACTACACCTGAA : ATATGGCCAGAGATCATTAGAAAGGCTAAGGAAGGCGGATTGGACGTGATAGAGAGTTATGTTTTCTGGAATTATCATGAACCTGTCAAAGGAGAG : TACTACTTTGAAGGCAGGTTTGACCTTGTACGGTTTGTGAAGACAGTACAAGAAGCTGGCCTATACGTGCATCTCCGTATAGGTCCATATGCCTGTGCTGAATGGAACTATGG : GGGCTTCCCTATGTGGCTACACTTTATCCCTGGAATAAAGTTTCGAACAACAAATGAACTTTTTAAG : AATGAAATGAAACTCTTTCTTGCCAAGATTGTTGATCTTATGAAGGATGAGAACCTCTTCGCTACACAAGGAGGTCCAATCATACTCGCTCAGGTTGTTTCTTTCATCTTTGTGATGATGGATGTCTTTGTGGTAGTTTAAATCTTCTTCCTTGAATCTACACTCTTATTACTTGATAGTGCACCTTCTTCTTTTCAATTTTAGTTGTTGCATTTTTTGTGTTAATCAGTGATCTATCCTCTTAACAGGTAGAAAATGAGTATGGAAATGTTGAATGGGCATATGGAGTCAGCGGAGAGCTATATGTAAAATGGGCTGCAGAAACTGCTGTTAATCTTAATACGACCGTCCCTTGGGTGATGTGTGCACAAGAAGATGCACCTGATTCAGTT : ATAAACACATGTAATGGATTCTATTGTGATCGCTTCACTCCAAATTCCCTGTCCAAGCCAAAGATGTGGACAGAAAACTACGTTGGATG : GTTCCTTGCATTTGGTTATCCTGTTCCTTTTCGACCTGTTGAAGACTTGGCTTTTGCTGTAGCACGTTTTTTTGAAACTGGTGGTACATTTCAAAATTATTACATG : TATTTTGGTGGCACCAATTTTGGTCGAACAGCTGGAGGTCCTCTAGTAGCAACAAGCTACGACTATGATGCCCCCATAGATGAGTATG : GTTTCATAAGTCAGCCAAAGTGGGGCCACCTACGCGATTTACACAAGGCTATAAAACACTGTGAAGAATATTTGGTCAATGCAGATCCAATTCATTTGTCCCTTGGTCTGAAACTTGAG : GCACATGTATATTACAAGAGCTCCAATGACTGTGCAGCCTTCCTTGCTAACTATGGTAACAGTTCAGATGCAAATGTTACATTTAATGGGAAGTCATATTTTCTTCATGCTTGGTCTGTTAGCATCCTTCCAGACTGTAAGAATGTCATATTCAACACGGCGAAG : GTTGTTTCACAAAAAACGACAGGAAGTACAGCATTTACTCACAACACGGTTACTATTGAAAATTCGCTGGAGTCAGATCCTTGGGGCTGGTACCAAGAAAAAGTTGGCATCGCGAATAATCATTCGTTTGCATCACCGCGCTTACTAGAGCAGATAAATACAACAAAGGATACCAGTGATTTCCTTTGGTATACAACAAG : TATAAATGTGGAGGAGAACATCAAGAAGAGGAAAGCCAAAGAATTGCAGTTAATGGTTGGAAGCTTAGGACATGCAGCTCTTGTTTTTGTAAACAAGAAACCAGTTGGTAACTAGCTCATCTAATCTCGTCTTCTTTAACCGTGTTTAATAACTTAGATAGGAACTCCAATTTGATCATAACAACAAAGTAAAAGTATAGTTTTTCTGATCGGTTAAGTTTTTTGATGAGGCGGTTCACACAACTCAACGGATCCAAGAAGAAGACTAATATGCTTCAGTTTTTACCTTGAACATTACTTAAGACTACAGAGAATTGCTAAGATAGCTGATTTGGAGCCTTCTTTAGGATTTGGCTATGGTAATCATGATGATGCAAGCTTTGTGCTAAGTAAGAAAATCCATCTTAAGCAAGGAAACAACACAGTGGACATATTGAGCATGATGGTTGGTTTGCAG : AACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG : GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG : ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT : GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG : GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA : GAAGAAAAAAAAAACATGAAAA</gDNA_template>
            <first_frame> L  N  Y  G  K  *  E  I  V  V  G  N  N  I  V  Y  A  F  S  F  *  K  R  G  V  D  D  S  N  L  *  S  Q  G  I  G  Y  *  W  K  E  E  N  F  A  I  R  I  N  T  L  S  K  N  Y  T  *   : N  M  A  R  D  H  *  K  G  *  G  R  R  I  G  R  D  R  E  L  C  F  L  E  L  S  *  T  C  Q  R  R   : V  L  L  *  R  Q  V  *  P  C  T  V  C  E  D  S  T  R  S  W  P  I  R  A  S  P  Y  R  S  I  C  L  C  *  M  E  L  W  :  G  L  P  Y  V  A  T  L  Y  P  W  N  K  V  S  N  N  K  *  T  F  *   : E  *  N  E  T  L  S  C  Q  D  C  *  S  Y  E  G  *  E  P  L  R  Y  T  R  R  S  N  H  T  R  S  G  C  F  F  H  L  C  D  D  G  C  L  C  G  S  L  N  L  L  P  *  I  Y  T  L  I  T  *  *  C  T  F  F  F  S  I  L  V  V  A  F  F  V  L  I  S  D  L  S  S  *  Q  V  E  N  E  Y  G  N  V  E  W  A  Y  G  V  S  G  E  L  Y  V  K  W  A  A  E  T  A  V  N  L  N  T  T  V  P  W  V  M  C  A  Q  E  D  A  P  D  S  V  :  I  N  T  C  N  G  F  Y  C  D  R  F  T  P  N  S  L  S  K  P  K  M  W  T  E  N  Y  V  G  W :   F  L  A  F  G  Y  P  V  P  F  R  P  V  E  D  L  A  F  A  V  A  R  F  F  E  T  G  G  T  F  Q  N  Y  Y  M  :  Y  F  G  G  T  N  F  G  R  T  A  G  G  P  L  V  A  T  S  Y  D  Y  D  A  P  I  D  E  Y   : G  F  I  S  Q  P  K  W  G  H  L  R  D  L  H  K  A  I  K  H  C  E  E  Y  L  V  N  A  D  P  I  H  L  S  L  G  L  K  L  E  :  A  H  V  Y  Y  K  S  S  N  D  C  A  A  F  L  A  N  Y  G  N  S  S  D  A  N  V  T  F  N  G  K  S  Y  F  L  H  A  W  S  V  S  I  L  P  D  C  K  N  V  I  F  N  T  A  K  :  V  V  S  Q  K  T  T  G  S  T  A  F  T  H  N  T  V  T  I  E  N  S  L  E  S  D  P  W  G  W  Y  Q  E  K  V  G  I  A  N  N  H  S  F  A  S  P  R  L  L  E  Q  I  N  T  T  K  D  T  S  D  F  L  W  Y  T  T  S :   I  N  V  E  E  N  I  K  K  R  K  A  K  E  L  Q  L  M  V  G  S  L  G  H  A  A  L  V  F  V  N  K  K  P  V  G  N  *  L  I  *  S  R  L  L  *  P  C  L  I  T  *  I  G  T  P  I  *  S  *  Q  Q  S  K  S  I  V  F  L  I  G  *  V  F  *  *  G  G  S  H  N  S  T  D  P  R  R  R  L  I  C  F  S  F  Y  L  E  H  Y  L  R  L  Q  R  I  A  K  I  A  D  L  E  P  S  L  G  F  G  Y  G  N  H  D  D  A  S  F  V  L  S  K  K  I  H  L  K  Q  G  N  N  T  V  D  I  L  S  M  M  V  G  L  Q  :  N  Y  G  P  W  F  D  I  S  G  A  G  V  F  S  V  I  F  S  D  L  K  N  S  K  N  F  S  S  T  E  W  I  Y  Q  :  V  G  L  E  G  E  Y  L  G  L  D  K  V  S  L  A  N  S  S  L  W  I  Q  G  S  S  V  P  V  H  Q  S  L  I  W  Y  K  :  T  S  F  S  P  P  E  G  R  G  P  I  S  L  N  L  S  S  M  G  K  G  Q  A  W  V  N  G  Q  H  I  G  R  Y  W  S  S  Y  R  S  P  S  T  G  C  S  D  N  C  D  Y  R  G  A  Y  D  S  W  K  C  L  K  K  C  G  Q  P  A  Q  V  L :   Y  H  V  P  R  S  W  L  K  P  E  K  N  L  L  V  L  H  E  E  L  G  G  D  P  S  K  I  S  F  S  T  R  S  G  Q  T  I  C  A  H  V  S  E  L  D  P  P  P  V  D  T  W  K  T  D  K  D  Q  T  S  Q  E  P  S  L  Q  L  N  C  E  Q  G  W  T  I  T  A  V  N  F  A  S  F  G  T  P  T  G  D  C  G  A  F  I  E  G  S  C  H  W  D  V  L  S  I  V  H  Q  :  G  C  V  G  K  S  G  C  S  I  P  I  T  M  A  K  L  G  D  P  C  P  G  V  Q  K  S  L  A  V  E  A  F  C  S  V  *  I  I  K  F  Y  G  W  C  S  H  *  L  S  V  V  T  F  F  V  K  F  S  A  S  S  N  Q  M  Y  W  S  L  F  *  P  E  P  A  L  L  R  Y  S  P  N  L  D  D  T  K  E  F  I   : R  R  K  K  K  H  E   </first_frame>
            <second_frame>  *  T  M  E  S  K  K  L  L  L  V  I  I  L  S  M  L  L  V  F  E  K  G  A  S  T  T  V  T  Y  D  H  K  A  L  V  I  D  G  K  R  R  I  L  Q  S  G  S  I  H  Y  P  R  T  T  P  E  :  I  W  P  E  I  I  R  K  A  K  E  G  G  L  D  V  I  E  S  Y  V  F  W  N  Y  H  E  P  V  K  G  E  :  Y  Y  F  E  G  R  F  D  L  V  R  F  V  K  T  V  Q  E  A  G  L  Y  V  H  L  R  I  G  P  Y  A  C  A  E  W  N  Y  G :   G  F  P  M  W  L  H  F  I  P  G  I  K  F  R  T  T  N  E  L  F  K  :  N  E  M  K  L  F  L  A  K  I  V  D  L  M  K  D  E  N  L  F  A  T  Q  G  G  P  I  I  L  A  Q  V  V  S  F  I  F  V  M  M  D  V  F  V  V  V  *  I  F  F  L  E  S  T  L  L  L  L  D  S  A  P  S  S  F  Q  F  *  L  L  H  F  L  C  *  S  V  I  Y  P  L  N  R  *  K  M  S  M  E  M  L  N  G  H  M  E  S  A  E  S  Y  M  *  N  G  L  Q  K  L  L  L  I  L  I  R  P  S  L  G  *  C  V  H  K  K  M  H  L  I  Q  L :   *  T  H  V  M  D  S  I  V  I  A  S  L  Q  I  P  C  P  S  Q  R  C  G  Q  K  T  T  L  D   : G  S  L  H  L  V  I  L  F  L  F  D  L  L  K  T  W  L  L  L  *  H  V  F  L  K  L  V  V  H  F  K  I  I  T  C :   I  L  V  A  P  I  L  V  E  Q  L  E  V  L  *  *  Q  Q  A  T  T  M  M  P  P  *  M  S  M  :  V  S  *  V  S  Q  S  G  A  T  Y  A  I  Y  T  R  L  *  N  T  V  K  N  I  W  S  M  Q  I  Q  F  I  C  P  L  V  *  N  L  R :   H  M  Y  I  T  R  A  P  M  T  V  Q  P  S  L  L  T  M  V  T  V  Q  M  Q  M  L  H  L  M  G  S  H  I  F  F  M  L  G  L  L  A  S  F  Q  T  V  R  M  S  Y  S  T  R  R  R :   L  F  H  K  K  R  Q  E  V  Q  H  L  L  T  T  R  L  L  L  K  I  R  W  S  Q  I  L  G  A  G  T  K  K  K  L  A  S  R  I  I  I  R  L  H  H  R  A  Y  *  S  R  *  I  Q  Q  R  I  P  V  I  S  F  G  I  Q  Q   : V  *  M  W  R  R  T  S  R  R  G  K  P  K  N  C  S  *  W  L  E  A  *  D  M  Q  L  L  F  L  *  T  R  N  Q  L  V  T  S  S  S  N  L  V  F  F  N  R  V  *  *  L  R  *  E  L  Q  F  D  H  N  N  K  V  K  V  *  F  F  *  S  V  K  F  F  D  E  A  V  H  T  T  Q  R  I  Q  E  E  D  *  Y  A  S  V  F  T  L  N  I  T  *  D  Y  R  E  L  L  R  *  L  I  W  S  L  L  *  D  L  A  M  V  I  M  M  M  Q  A  L  C  *  V  R  K  S  I  L  S  K  E  T  T  Q  W  T  Y  *  A  *  W  L  V  C  R :   T  M  D  H  G  L  T  S  L  E  Q  V  Y  F  L  L  S  S  V  I  *  R  I  P  R  I  F  L  L  Q  N  G  S  T  R :   *  V  L  K  V  S  I  L  D  L  I  K  L  V  L  Q  I  V  L  C  G  F  R  G  V  L  S  Q  Y  I  R  V  *  Y  G  T  R :   Q  V  F  L  L  Q  K  E  E  A  L  Y  R  *  I  C  Q  V  W  V  K  V  R  H  G  *  M  G  S  I  *  G  D  T  G  L  L  I  V  H  P  Q  Q  A  V  L  I  I  V  T  T  E  E  L  M  I  H  G  N  V  *  R  N  V  V  N  L  L  K  C   : C  T  M  Y  H  A  V  G  *  S  Q  K  R  T  C  L  C  C  M  K  S  L  V  V  T  L  Q  K  Y  L  S  Q  R  D  L  G  K  Q  F  V  L  M  Y  L  S  *  I  L  H  L  L  I  L  G  R  Q  T  K  I  K  H  L  K  N  L  H  C  N  *  I  V  S  K  D  G  L  S  P  Q  L  T  L  L  A  L  E  L  L  Q  E  I  V  E  H  S  L  K  G  V  A  I  G  M  C  Y  P  *  F  I  R :   G  V  W  A  S  Q  D  V  P  F  L  S  P  W  L  N  L  V  T  H  V  L  E  Y  K  K  V  W  L  L  K  L  F  A  V  F  E  S  S  N  S  M  V  G  V  V  I  S  L  A  W  *  P  S  L  S  N  F  L  L  L  A  I  K  C  T  G  L  C  F  S  Q  S  Q  L  Y  F  G  T  A  L  I  L  M  I  Q  K  S  L  *  :  E  E  K  K  N  M  K  </second_frame>
            <third_frame>   E  L  W  K  V  R  N  C  C  W  *  *  Y  C  L  C  F  *  F  L  K  K  G  R  R  R  Q  *  L  M  I  T  R  H  W  L  L  M  E  R  G  E  F  C  N  Q  D  Q  Y  I  I  Q  E  L  H  L  K :   Y  G  Q  R  S  L  E  R  L  R  K  A  D  W  T  *  *  R  V  M  F  S  G  I  I  M  N  L  S  K  E  S :   T  T  L  K  A  G  L  T  L  Y  G  L  *  R  Q  Y  K  K  L  A  Y  T  C  I  S  V  *  V  H  M  P  V  L  N  G  T  M   : G  A  S  L  C  G  Y  T  L  S  L  E  *  S  F  E  Q  Q  M  N  F  L  R :   M  K  *  N  S  F  L  P  R  L  L  I  L  *  R  M  R  T  S  S  L  H  K  E  V  Q  S  Y  S  L  R  L  F  L  S  S  L  *  *  W  M  S  L  W  *  F  K  S  S  S  L  N  L  H  S  Y  Y  L  I  V  H  L  L  L  F  N  F  S  C  C  I  F  C  V  N  Q  *  S  I  L  L  T  G  R  K  *  V  W  K  C  *  M  G  I  W  S  Q  R  R  A  I  C  K  M  G  C  R  N  C  C  *  S  *  Y  D  R  P  L  G  D  V  C  T  R  R  C  T  *  F  S   : Y  K  H  M  *  W  I  L  L  *  S  L  H  S  K  F  P  V  Q  A  K  D  V  D  R  K  L  R  W  M  :  V  P  C  I  W  L  S  C  S  F  S  T  C  *  R  L  G  F  C  C  S  T  F  F  *  N  W  W  Y  I  S  K  L  L  H   : V  F  W  W  H  Q  F  W  S  N  S  W  R  S  S  S  S  N  K  L  R  L  *  C  P  H  R  *  V  W :   F  H  K  S  A  K  V  G  P  P  T  R  F  T  Q  G  Y  K  T  L  *  R  I  F  G  Q  C  R  S  N  S  F  V  P  W  S  E  T  *   : G  T  C  I  L  Q  E  L  Q  *  L  C  S  L  P  C  *  L  W  *  Q  F  R  C  K  C  Y  I  *  W  E  V  I  F  S  S  C  L  V  C  *  H  P  S  R  L  *  E  C  H  I  Q  H  G  E   : G  C  F  T  K  N  D  R  K  Y  S  I  Y  S  Q  H  G  Y  Y  *  K  F  A  G  V  R  S  L  G  L  V  P  R  K  S  W  H  R  E  *  S  F  V  C  I  T  A  L  T  R  A  D  K  Y  N  K  G  Y  Q  *  F  P  L  V  Y  N  K  :  Y  K  C  G  G  E  H  Q  E  E  E  S  Q  R  I  A  V  N  G  W  K  L  R  T  C  S  S  C  F  C  K  Q  E  T  S  W  *  L  A  H  L  I  S  S  S  L  T  V  F  N  N  L  D  R  N  S  N  L  I  I  T  T  K  *  K  Y  S  F  S  D  R  L  S  F  L  M  R  R  F  T  Q  L  N  G  S  K  K  K  T  N  M  L  Q  F  L  P  *  T  L  L  K  T  T  E  N  C  *  D  S  *  F  G  A  F  F  R  I  W  L  W  *  S  *  *  C  K  L  C  A  K  *  E  N  P  S  *  A  R  K  Q  H  S  G  H  I  E  H  D  G  W  F  A   : E  L  W  T  M  V  *  H  L  W  S  R  C  I  F  C  Y  L  Q  *  F  E  E  F  Q  E  F  F  F  Y  R  M  D  L  P   : G  R  S  *  R  *  V  S  W  T  *  *  S  *  S  C  K  *  F  S  V  D  S  G  E  F  C  P  S  T  S  E  F  D  M  V  Q   : D  K  F  F  S  S  R  R  K  R  P  Y  I  A  K  S  V  K  Y  G  *  R  S  G  M  G  K  W  A  A  Y  R  E  I  L  V  F  L  S  F  T  L  N  R  L  F  *  *  L  *  L  Q  R  S  L  *  F  M  E  M  F  E  E  M  W  S  T  C  S  S  V  :  V  P  C  T  T  Q  L  V  K  A  R  K  E  L  A  C  A  A  *  R  A  W  W  *  P  F  K  N  I  F  L  N  A  I  W  A  N  N  L  C  S  C  I  *  V  R  S  S  T  C  *  Y  L  E  D  R  Q  R  S  N  I  S  R  T  F  I  A  T  E  L  *  A  R  M  D  Y  H  R  S  *  L  C  *  L  W  N  S  Y  R  R  L  W  S  I  H  *  R  E  L  P  L  G  C  V  I  H  S  S  S   : G  V  C  G  Q  V  R  M  F  H  S  Y  H  H  G  *  T  W  *  P  M  S  W  S  T  K  K  S  G  C  *  S  F  L  Q  C  L  N  H  Q  I  L  W  L  V  *  S  L  A  *  R  G  N  L  L  C  Q  I  F  C  F  *  Q  S  N  V  L  V  F  V  L  A  R  A  S  F  T  S  V  Q  P  *  S  *  *  Y  K  R  V  Y  K :   K  K  K  K  T  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116391" stop="116164"/>
                    <exon start="116042" stop="115938"/>
                    <exon start="115514" stop="115404"/>
                    <exon start="115217" stop="115006"/>
                    <exon start="114897" stop="114570"/>
                    <exon start="114216" stop="114106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSHNSTDPRRRLICFSFYLEHYLRLQRIAKIADLEPSLGFGYGNHDDASFVLSKKIHLKQGNNTVDILSMMVGLQNYGPWFDISGAGVFSVIFSDLKNSKNFSSTEWIYQVGLEGEYLGLDKVSLANSSLWIQGSSVPVHQSLIWYKTSFSPPEGRGPISLNLSSMGKGQAWVNGQHIGRYWSSYRSPSTGCSDNCDYRGAYDSWKCLKKCGQPAQVLYHVPRSWLKPEKNLLVLHEELGGDPSKISFSTRSGQTICAHVSELDPPPVDTWKTDKDQTSQEPSLQLNCEQGWTITAVNFASFGTPTGDCGAFIEGSCHWDVLSIVHQGCVGKSGCSIPITMAKLGDPCPGVQKSLAVEAFCSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118738" stop="118592"/>
                    <exon start="118395" stop="118307"/>
                    <exon start="118212" stop="118107"/>
                    <exon start="118028" stop="117941"/>
                    <exon start="117836" stop="117718"/>
                    <exon start="117390" stop="117226"/>
                    <exon start="117017" stop="116818"/>
                    <exon start="116620" stop="116506"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVENEYGNVEWAYGVSGELYVKWAAETAVNLNTTVPWVMCAQEDAPDSVINTCNGFYCDRFTPNSLSKPKMWTENYVGWFLAFGYPVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFISQPKWGHLRDLHKAIKHCEEYLVNADPIHLSLGLKLEAHVYYKSSNDCAAFLANYGNSSDANVTFNGKSYFLHAWSVSILPDCKNVIFNTAKVVSQKTTGSTAFTHNTVTIENSLESDPWGWYQEKVGIANNHSFASPRLLEQINTTKDTSDFLWYTTSINVEENIKKRKAKELQLMVGSLGHAALVFVNKKPVGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119915" stop="119748"/>
                    <exon start="119632" stop="119537"/>
                    <exon start="119358" stop="119246"/>
                    <exon start="119145" stop="119079"/>
                    <exon start="118983" stop="118843"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMESKKLLLVIILSMLLVFEKGASTTVTYDHKALVIDGKRRILQSGSIHYPRTTPEIWPEIIRKAKEGGLDVIESYVFWNYHEPVKGEYYFEGRFDLVRFVKTVQEAGLYVHLRIGPYACAEWNYGGFPMWLHFIPGIKFRTTNELFKNEMKLFLAKIVDLMKDENLFATQGGPIILAQVVSFIFVMMDVFVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="116045" e_stop="115938"/>
            <exon e_start="115514" e_stop="115404"/>
            <exon e_start="115217" e_stop="115006"/>
            <exon e_start="114897" e_stop="114570"/>
            <exon e_start="114216" e_stop="113946"/>
            <exon e_start="113726" e_stop="113704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.759" acc_prob="0.936" e_score="0.991"/>
          <exon-intron don_prob="0.960" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.442" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.739"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="116045" e_stop="115938" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.759" acc_prob="0.936">
            <gDNA_intron_boundary i_start="115937" i_stop="115515" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115514" e_stop="115404" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.990">
            <gDNA_intron_boundary i_start="115403" i_stop="115218" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115217" e_stop="115006" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.874">
            <gDNA_intron_boundary i_start="115005" i_stop="114898" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="114897" e_stop="114570" e_length="328"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="114569" i_stop="114217" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114216" e_stop="113946" e_length="271"/>
          </exon>
          <intron i_serial="5" don_prob="0.442" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113945" i_stop="113727" i_length="219"/>
          </intron>
          <exon e_serial="6" e_score="0.739">
            <gDNA_exon_boundary e_start="113726" e_stop="113704" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116045" stop="115938"/>
              <exon start="115514" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115461" stop="115404"/>
              <exon start="115217" stop="115006"/>
              <exon start="114897" stop="114612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115057" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="113946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115056" stop="115006"/>
              <exon start="114897" stop="114570"/>
              <exon start="114216" stop="114090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114663" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114659" stop="114570"/>
              <exon start="114216" stop="113946"/>
              <exon start="113726" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACTATGGACCATGGTTTGACATCTCTGGAGCAGGTGTATTTTCTGTTATCTTCAGTGATTTGAAGAATTCCAAGAATTTTTCTTCTACAGAATGGATCTACCAG : GTAGGTCTTGAAGGTGAGTATCTTGGACTTGATAAAGTTAGTCTTGCAAATAGTTCTCTGTGGATTCAGGGGAGTTCTGTCCCAGTACATCAGAGTTTGATATGGTACAAG : ACAAGTTTTTCTCCTCCAGAAGGAAGAGGCCCTATATCGCTAAATCTGTCAAGTATGGGTAAAGGTCAGGCATGGGTAAATGGGCAGCATATAGGGAGATACTGGTCTTCTTATCGTTCACCCTCAACAGGCTGTTCTGATAATTGTGACTACAGAGGAGCTTATGATTCATGGAAATGTTTGAAGAAATGTGGTCAACCTGCTCAAGTGTT : GTACCATGTACCACGCAGTTGGTTAAAGCCAGAAAAGAACTTGCTTGTGCTGCATGAAGAGCTTGGTGGTGACCCTTCAAAAATATCTTTCTCAACGCGATCTGGGCAAACAATTTGTGCTCATGTATCTGAGTTAGATCCTCCACCTGTTGATACTTGGAAGACAGACAAAGATCAAACATCTCAAGAACCTTCATTGCAACTGAATTGTGAGCAAGGATGGACTATCACCGCAGTTAACTTTGCTAGCTTTGGAACTCCTACAGGAGATTGTGGAGCATTCATTGAAGGGAGTTGCCATTGGGATGTGTTATCCATAGTTCATCAG : GGGTGTGTGGGCAAGTCAGGATGTTCCATTCCTATCACCATGGCTAAACTTGGTGACCCATGTCCTGGAGTACAAAAAAGTCTGGCTGTTGAAGCTTTTTGCAGTGTTTGAATCATCAAATTCTATGGTTGGTGTAGTCATTAGCTTAGCGTGGTAACCTTCTTTGTCAAATTTTCTGCTTCTAGCAATCAAATGTACTGGTCTTTGTTTTAGCCAGAGCCAGCTTTACTTCGGTACAGCCCTAATCTTGATGATACAAAAGAGTTTATAA : TTGAAGAAAAAAAAAACATGAAA</gDNA_template>
            <first_frame> Q  N  Y  G  P  W  F  D  I  S  G  A  G  V  F  S  V  I  F  S  D  L  K  N  S  K  N  F  S  S  T  E  W  I  Y  Q  :  V  G  L  E  G  E  Y  L  G  L  D  K  V  S  L  A  N  S  S  L  W  I  Q  G  S  S  V  P  V  H  Q  S  L  I  W  Y  K  :  T  S  F  S  P  P  E  G  R  G  P  I  S  L  N  L  S  S  M  G  K  G  Q  A  W  V  N  G  Q  H  I  G  R  Y  W  S  S  Y  R  S  P  S  T  G  C  S  D  N  C  D  Y  R  G  A  Y  D  S  W  K  C  L  K  K  C  G  Q  P  A  Q  V  L :   Y  H  V  P  R  S  W  L  K  P  E  K  N  L  L  V  L  H  E  E  L  G  G  D  P  S  K  I  S  F  S  T  R  S  G  Q  T  I  C  A  H  V  S  E  L  D  P  P  P  V  D  T  W  K  T  D  K  D  Q  T  S  Q  E  P  S  L  Q  L  N  C  E  Q  G  W  T  I  T  A  V  N  F  A  S  F  G  T  P  T  G  D  C  G  A  F  I  E  G  S  C  H  W  D  V  L  S  I  V  H  Q  :  G  C  V  G  K  S  G  C  S  I  P  I  T  M  A  K  L  G  D  P  C  P  G  V  Q  K  S  L  A  V  E  A  F  C  S  V  *  I  I  K  F  Y  G  W  C  S  H  *  L  S  V  V  T  F  F  V  K  F  S  A  S  S  N  Q  M  Y  W  S  L  F  *  P  E  P  A  L  L  R  Y  S  P  N  L  D  D  T  K  E  F  I   : I  E  E  K  K  N  M  K </first_frame>
            <second_frame>  R  T  M  D  H  G  L  T  S  L  E  Q  V  Y  F  L  L  S  S  V  I  *  R  I  P  R  I  F  L  L  Q  N  G  S  T  R :   *  V  L  K  V  S  I  L  D  L  I  K  L  V  L  Q  I  V  L  C  G  F  R  G  V  L  S  Q  Y  I  R  V  *  Y  G  T  R :   Q  V  F  L  L  Q  K  E  E  A  L  Y  R  *  I  C  Q  V  W  V  K  V  R  H  G  *  M  G  S  I  *  G  D  T  G  L  L  I  V  H  P  Q  Q  A  V  L  I  I  V  T  T  E  E  L  M  I  H  G  N  V  *  R  N  V  V  N  L  L  K  C   : C  T  M  Y  H  A  V  G  *  S  Q  K  R  T  C  L  C  C  M  K  S  L  V  V  T  L  Q  K  Y  L  S  Q  R  D  L  G  K  Q  F  V  L  M  Y  L  S  *  I  L  H  L  L  I  L  G  R  Q  T  K  I  K  H  L  K  N  L  H  C  N  *  I  V  S  K  D  G  L  S  P  Q  L  T  L  L  A  L  E  L  L  Q  E  I  V  E  H  S  L  K  G  V  A  I  G  M  C  Y  P  *  F  I  R :   G  V  W  A  S  Q  D  V  P  F  L  S  P  W  L  N  L  V  T  H  V  L  E  Y  K  K  V  W  L  L  K  L  F  A  V  F  E  S  S  N  S  M  V  G  V  V  I  S  L  A  W  *  P  S  L  S  N  F  L  L  L  A  I  K  C  T  G  L  C  F  S  Q  S  Q  L  Y  F  G  T  A  L  I  L  M  I  Q  K  S  L  *  :  L  K  K  K  K  T  *   </second_frame>
            <third_frame>   E  L  W  T  M  V  *  H  L  W  S  R  C  I  F  C  Y  L  Q  *  F  E  E  F  Q  E  F  F  F  Y  R  M  D  L  P   : G  R  S  *  R  *  V  S  W  T  *  *  S  *  S  C  K  *  F  S  V  D  S  G  E  F  C  P  S  T  S  E  F  D  M  V  Q   : D  K  F  F  S  S  R  R  K  R  P  Y  I  A  K  S  V  K  Y  G  *  R  S  G  M  G  K  W  A  A  Y  R  E  I  L  V  F  L  S  F  T  L  N  R  L  F  *  *  L  *  L  Q  R  S  L  *  F  M  E  M  F  E  E  M  W  S  T  C  S  S  V  :  V  P  C  T  T  Q  L  V  K  A  R  K  E  L  A  C  A  A  *  R  A  W  W  *  P  F  K  N  I  F  L  N  A  I  W  A  N  N  L  C  S  C  I  *  V  R  S  S  T  C  *  Y  L  E  D  R  Q  R  S  N  I  S  R  T  F  I  A  T  E  L  *  A  R  M  D  Y  H  R  S  *  L  C  *  L  W  N  S  Y  R  R  L  W  S  I  H  *  R  E  L  P  L  G  C  V  I  H  S  S  S   : G  V  C  G  Q  V  R  M  F  H  S  Y  H  H  G  *  T  W  *  P  M  S  W  S  T  K  K  S  G  C  *  S  F  L  Q  C  L  N  H  Q  I  L  W  L  V  *  S  L  A  *  R  G  N  L  L  C  Q  I  F  C  F  *  Q  S  N  V  L  V  F  V  L  A  R  A  S  F  T  S  V  Q  P  *  S  *  *  Y  K  R  V  Y  N :   *  R  K  K  K  H  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116045" stop="115938"/>
                    <exon start="115514" stop="115404"/>
                    <exon start="115217" stop="115006"/>
                    <exon start="114897" stop="114570"/>
                    <exon start="114216" stop="114106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNYGPWFDISGAGVFSVIFSDLKNSKNFSSTEWIYQVGLEGEYLGLDKVSLANSSLWIQGSSVPVHQSLIWYKTSFSPPEGRGPISLNLSSMGKGQAWVNGQHIGRYWSSYRSPSTGCSDNCDYRGAYDSWKCLKKCGQPAQVLYHVPRSWLKPEKNLLVLHEELGGDPSKISFSTRSGQTICAHVSELDPPPVDTWKTDKDQTSQEPSLQLNCEQGWTITAVNFASFGTPTGDCGAFIEGSCHWDVLSIVHQGCVGKSGCSIPITMAKLGDPCPGVQKSLAVEAFCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="127538" PGL_stop="131001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127538" e_stop="127590"/>
            <exon e_start="127713" e_stop="127835"/>
            <exon e_start="128499" e_stop="128789"/>
            <exon e_start="130430" e_stop="131001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="0.546" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127538" e_stop="127590" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="0.546">
            <gDNA_intron_boundary i_start="127591" i_stop="127712" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127713" e_stop="127835" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127836" i_stop="128498" i_length="663"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128499" e_stop="128789" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128790" i_stop="130429" i_length="1640"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="130430" e_stop="131001" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127538" stop="127590"/>
              <exon start="127713" stop="127835"/>
              <exon start="128499" stop="128789"/>
              <exon start="130430" stop="130808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127541" stop="127590"/>
              <exon start="127713" stop="127835"/>
              <exon start="128499" stop="128789"/>
              <exon start="130430" stop="130835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128572" stop="128789"/>
              <exon start="130430" stop="130933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592389" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130467" stop="130977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130494" stop="131001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130494" stop="131001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130494" stop="131001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130494" stop="131001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130494" stop="131001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTG : GCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAG : CCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAG : GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAATCTAGCAGTAT</gDNA_template>
            <first_frame> A  K  H  F  S  C  F  *  T  Q  L  K  N  A  M  R  L  W :   Q  L  P  N  F  W  L  *  C  I  V  I  *  I  Y  P  S  A  K  T  L  C  L  M  K  S  R  G  G  K  F  I  I  P  F  R  *  L  Y  F  S :   L  A  L  L  T  *  I  T  G  H  *  N  F  S  S  I  G  H  G  S  L  S  L  S  V  Q  H  A  L  S  *  *  S  R  C  R  F  L  G  C  I  R  I  G  S  A  G  R  L  P  S  F  S  I  F  H  S  Q  W  P  C  T  P  W  L  F  S  T  M  F  S  Q  R  N  C  S  H  T  N  H  F  Q  S  S  S  A  L  K  G  *  F  S  S  A  F  G  R :   G  C  W  L  K  F  *  S  R  G  E  L  S  N  L  T  I  F  G  W  M  W  S  T  F  R  K  P  F  R  M  F  *  F  V  W  R  W  F  S  F  L  L  C  S  N  M  H  T  T  W  L  L  T  V  V  M  S  K  Q  S  *  N  *  K  R  M  T  K  S  M  H  K  T  L  V  *  I  D  T  F  P  L  *  S  C  I  Y  H  Q  S  P  C  V  M  Q  V  F  I  V  V  *  P  V  D  T  A  Q  E  G  L  K  I  T  N  F  R  V  C  *  Q  R  R  K  F  L  S  F  P  L  I  T  S  F  Y  S  F  V  V  R  L  L  V  V  I  S  V  I  F  L  H  E  R  L  V  S  L  P  A  P  A  T  S  L  I  A  T  L  *  V  I  I  F  L  I  I  L  R  I  S  *  L  C  E  C  S  N  L  A  V  </first_frame>
            <second_frame>  Q  N  I  F  H  V  S  R  L  S  *  R  M  L  *  G  C   : G  N  C  Q  I  F  G  F  D  V  *  L  F  E  Y  I  H  Q  Q  K  H  C  A  *  *  N  Q  G  E  G  N  S  S  F  L  S  D  D  S  I  S   : A  S  H  C  S  L  R  S  P  D  T  E  T  S  Q  A  L  D  M  A  V  C  H  Y  P  S  S  M  L  Y  L  D  D  H  V  A  D  S  W  V  V  S  E  L  A  Q  L  D  V  Y  H  H  S  Q  Y  F  I  L  S  G  H  V  L  L  G  C  F  L  P  C  F  L  K  G  T  A  A  T  Q  T  T  F  K  V  H  L  H  *  R  D  S  F  L  Q  L  L  A   : G  V  A  G  *  N  S  S  L  V  G  N  Y  Q  I  S  P  F  L  V  G  C  G  A  P  S  G  S  H  S  E  C  F  N  L  C  G  D  G  F  L  F  C  Y  A  A  I  C  I  P  R  G  S  L  Q  W  *  C  R  S  K  V  E  T  E  K  G  *  L  S  R  C  T  R  R  W  C  E  *  T  L  F  L  C  D  L  A  F  T  T  S  R  R  V  *  C  K  F  L  L  L  C  N  L  L  I  R  L  R  K  V  L  R  *  L  I  F  A  C  V  S  K  E  G  N  F  Y  H  F  L  *  *  P  V  F  T  L  L  W  L  D  F  L  *  L  Y  Q  *  F  F  F  M  R  G  W  C  P  C  R  H  L  Q  Q  A  *  L  R  L  C  K  *  S  F  S  *  L  S  *  E  Y  H  D  Y  V  N  A  L  I  *  Q  Y </second_frame>
            <third_frame>   K  T  F  F  M  F  L  D  S  V  K  E  C  Y  E  A  V  :  A  I  A  K  F  L  A  L  M  Y  S  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  E  I  H  H  S  F  P  M  T  L  F  Q  :  P  R  T  A  H  L  D  H  R  T  L  K  L  L  K  H  W  T  W  Q  F  V  I  I  R  P  A  C  S  I  L  M  I  T  L  Q  I  L  G  L  Y  P  N  W  L  S  W  T  F  T  I  I  L  N  I  S  F  S  V  A  M  Y  S  L  V  V  F  Y  H  V  F  S  K  E  L  Q  P  H  K  P  L  S  K  F  I  C  I  K  G  I  V  F  F  S  F  W  Q  :  G  L  L  V  K  I  L  V  S  W  G  I  I  K  S  H  H  F  W  L  D  V  E  H  L  Q  E  A  I  Q  N  V  L  I  C  V  E  M  V  F  F  S  V  M  Q  Q  Y  A  Y  H  V  A  P  Y  S  G  D  V  E  A  K  L  K  L  K  K  D  D  *  V  D  A  Q  D  V  G  V  N  R  H  F  S  S  V  I  L  H  L  P  P  V  A  V  C  N  A  S  F  Y  C  C  V  T  C  *  Y  G  S  G  R  S  *  D  N  *  F  S  R  V  L  A  K  K  E  I  S  I  I  S  S  D  N  Q  F  L  L  F  C  G  *  T  S  C  S  Y  I  S  N  F  S  S  *  E  A  G  V  P  A  G  T  C  N  K  L  D  C  D  F  V  S  N  H  F  L  N  Y  L  E  N  I  M  T  M  *  M  L  *  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127540" stop="127590"/>
                    <exon start="127713" stop="127835"/>
                    <exon start="128499" stop="128789"/>
                    <exon start="130430" stop="130636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFFMFLDSVKECYEAVAIAKFLALMYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTAHLDHRTLKLLKHWTWQFVIIRPACSILMITLQILGLYPNWLSWTFTIILNISFSVAMYSLVVFYHVFSKELQPHKPLSKFICIKGIVFFSFWQGLLVKILVSWGIIKSHHFWLDVEHLQEAIQNVLICVEMVFFSVMQQYAYHVAPYSGDVEAKLKLKKDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="135235" PGL_stop="134405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135235" e_stop="134405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="135235" e_stop="134405" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135235" stop="134463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135082" stop="134405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135082" stop="134436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGA</gDNA_template>
            <first_frame> V  F  P  *  A  W  S  F  D  F  V  S  W  D  G  Y  K  G  E  N  L  G  C  L  Q  F  R  *  M  Y  E  D  L  H  G  A  Y  K  G  S  E  G  Y  L  V  *  Q  *  R  D  E  V  F  D  S  W  I  *  *  V  H  *  V  L  G  Y  R  N  R  T  S  N  S  N  V  H  D  G  *  D  T  L  C  G  E  A  *  S  *  *  R  *  A  E  C  T  F  G  W  Y  E  *  *  E  D  C  A  V  G  Y  K  Q  W  T  D  Y  T  R  V  R  S  T  S  G  G  S  *  Y  N  Y  L  C  G  *  *  Q  K  V  C  D  L  *  *  *  *  I  T  T  C  L  G  I  W  Y  S  G  C  Y  Q  V  Y  K  *  T  P  Y  A  F  H  A  I  Y  F  A  P  S  K  W  E  L  D  C  S  T  K  F  G  *  P  D  S  Y  L  Q  Y  A  R  E  I  S  A  E  *  K  E  K  I  C  W  T  H  C  R  W  L  C  L  P  G  Q  F  L  T  *  W  T  V  C  L  L  R  R  W  *  R  Q  M  L  V  L  G  L  E  I  V  *  G  L  Q  N  S  Q  V  S  *  W  G  L  Y  W  C  R  V  A  S  S  G  T  K  *  S  C  Y  L  W  L  G </first_frame>
            <second_frame>  F  F  P  K  H  G  H  L  I  L  S  A  G  M  D  T  K  V  K  I  W  D  V  Y  N  S  G  K  C  M  R  T  Y  M  G  H  T  K  A  V  R  D  I  W  F  S  N  D  G  T  K  F  L  T  A  G  Y  D  K  Y  I  K  Y  W  D  T  E  T  G  Q  V  I  Q  T  F  T  T  G  K  I  P  Y  V  V  R  L  N  P  D  E  D  K  Q  N  V  L  L  A  G  M  S  D  K  K  I  V  Q  W  D  I  N  S  G  Q  I  T  Q  E  Y  D  Q  H  L  G  A  V  N  T  I  T  F  V  D  N  N  R  R  F  V  T  S  S  D  D  K  S  L  R  V  W  E  Y  G  I  P  V  V  I  K  Y  I  S  E  P  H  M  H  S  M  P  S  I  S  P  H  P  N  G  N  W  I  A  A  Q  S  L  D  N  Q  I  L  I  Y  S  T  R  E  R  F  Q  L  N  K  K  K  R  F  A  G  H  I  V  A  G  Y  A  C  Q  V  N  F  S  P  D  G  R  F  V  F  S  G  D  G  E  G  R  C  W  F  W  D  W  K  S  C  K  V  F  R  T  L  K  C  H  D  G  V  C  I  G  A  E  W  H  P  L  E  Q  S  K  V  A  T  C  G  W   </second_frame>
            <third_frame>   F  S  L  S  M  V  I  *  F  C  Q  L  G  W  I  Q  R  *  K  F  G  M  F  T  I  P  V  N  V  *  G  L  T  W  G  I  Q  R  Q  *  G  I  F  G  L  A  M  T  G  R  S  F  *  Q  L  D  M  I  S  T  L  S  I  G  I  Q  K  Q  D  K  *  F  K  R  S  R  R  V  R  Y  P  M  W  *  G  L  I  L  M  K  I  S  R  M  Y  F  W  L  V  *  V  I  R  R  L  C  S  G  I  *  T  V  D  R  L  H  K  S  T  I  N  I  W  G  Q  L  I  Q  L  P  L  W  I  I  T  E  G  L  *  P  L  V  M  I  N  H  Y  V  F  G  N  M  V  F  R  L  L  S  S  I  *  V  N  P  I  C  I  P  C  H  L  F  R  P  I  Q  M  G  I  G  L  Q  H  K  V  W  I  T  R  F  L  F  T  V  R  E  R  D  F  S  *  I  K  R  K  D  L  L  D  T  L  S  L  V  M  P  A  R  S  I  S  H  L  M  D  G  L  S  S  Q  E  M  V  K  A  D  A  G  F  G  I  G  N  R  V  R  S  S  E  L  S  S  V  M  M  G  S  V  L  V  Q  S  G  I  L  W  N  K  V  K  L  L  L  V  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135234" stop="134407"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPKHGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHTKAVRDIWFSNDGTKFLTAGYDKYIKYWDTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPNGNWIAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKSCKVFRTLKCHDGVCIGAEWHPLEQSKVATCGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="136085" PGL_stop="135512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136085" e_stop="135512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="136085" e_stop="135512" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136085" stop="135512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341300" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCAGGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGG</gDNA_template>
            <first_frame> F  Y  N  L  H  T  R  M  N  R  R  I  L  P  Q  Y  A  C  F  L  L  N  P  P  P  L  K  S  T  T  P  C  *  P  *  Q  S  P  A  K  L  P  E  L  N  P  N  P  L  T  R  P  S  T  L  L  D  S  T  R  R  T  N  N  Y  G  H  Q  F  V  V  Q  L  T  R  T  Q  R  T  G  *  L  K  D  S  E  I  T  S  *  G  S  *  R  T  R  L  L  S  P  L  Y  S  M  S  S  T  I  L  F  R  S  M  G  T  L  L  I  P  L  K  I  A  T  S  V  I  W  K  K  *  R  N  V  M  Q  F  L  C  I  T  Y  H  S  M  N  R  R  R  G  S  *  R  R  R  R  K  K  W  R  R  R  V  M  S  R  M  W  I  *  R  K  L  K  I  R  P  P  T  H  G  *  *  R  T  G  R  V  H  G  L  </first_frame>
            <second_frame>  F  T  I  F  I  R  G  *  I  A  G  F  F  P  N  T  H  A  S  F  *  I  R  R  P  *  S  R  R  H  H  A  S  P  N  S  R  R  R  S  C  Q  S  S  I  Q  T  P  *  P  D  P  A  R  C  W  I  Q  P  D  V  R  T  T  M  G  T  N  L  W  S  S  S  P  V  R  K  G  R  V  S  S  R  T  Q  K  S  Q  V  R  V  R  R  G  R  V  Y  *  A  L  C  I  R  *  A  V  Q  Y  F  S  E  V  W  V  R  C  *  S  L  *  K  *  L  H  R  *  F  G  K  N  E  G  M  *  C  N  F  C  V  *  H  T  T  A  *  T  E  E  E  E  V  R  E  E  E  G  K  N  G  G  G  G  *  *  A  G  C  G  Y  D  G  S  *  K  S  V  H  R  H  M  V  D  E  E  Q  E  E  S  M  G  W </second_frame>
            <third_frame>   L  Q  S  S  Y  E  D  E  S  P  D  S  S  P  I  R  M  L  P  S  K  S  A  A  P  K  V  D  D  T  M  L  A  L  T  V  A  G  E  A  A  R  A  Q  S  K  P  L  D  P  T  Q  H  V  V  G  F  N  P  T  Y  E  Q  L  W  A  P  I  C  G  P  A  H  P  Y  A  K  D  G  L  A  Q  G  L  R  N  H  K  L  G  F  V  E  D  A  S  I  E  P  F  V  F  D  E  Q  Y  N  T  F  Q  K  Y  G  Y  A  V  D  P  S  E  N  S  Y  I  G  D  L  E  K  M  K  E  C  D  A  I  S  V  Y  N  I  P  Q  H  E  Q  K  K  R  K  L  E  K  K  K  E  K  M  E  E  E  G  D  E  Q  D  V  D  M  T  E  V  E  N  P  S  T  D  T  W  L  M  K  N  R  K  S  P  W  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0090O01.2" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136083" stop="135514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQSSYEDESPDSSPIRMLPSKSAAPKVDDTMLALTVAGEAARAQSKPLDPTQHVVGFNPTYEQLWAPICGPAHPYAKDGLAQGLRNHKLGFVEDASIEPFVFDEQYNTFQKYGYAVDPSENSYIGDLEKMKECDAISVYNIPQHEQKKRKLEKKKEKMEEEGDEQDVDMTEVENPSTDTWLMKNRKSPWA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="139637" PGL_stop="139789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139637" e_stop="139789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="139637" e_stop="139789" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139637" stop="139789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTTTCTCGCTTTATACAAAAACATAAACACAATATATACACTTCTGTTGTATAGAGCTAGAGAAAATTGTATTTCACTGCAATCGTATAATTCGCAATT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  H  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  A  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  F  L  A  L  Y  K  N  I  N  T  I  Y  T  L  L  L  Y  R  A  R  E  N  C  I  S  L  Q  S  Y  N  S  Q   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  F  S  L  Y  T  K  T  *  T  Q  Y  I  H  F  C  C  I  E  L  E  K  I  V  F  H  C  N  R  I  I  R  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0090O01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 302 chains have been computed
$ 
$ memory statistics:
$ 936336 bytes spliced alignments in total
$ 184 spliced alignments have been stored
$ 5088 bytes was the average size of a spliced alignment
$ 44368 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1706 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 339 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:56:09
-->
