<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-28 01:39:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0075D08-XIan2/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M382-F" ref_strand="+" ref_description="SGN-M382-F TG567-F [rflp_markers_forward]">
      <seq>tttgactggtactttcagcaataactcttacattctacctagaccattgggtgatcaatgattactatgttttctccatactaatgaaaaaatgtgcaaatcgtgtcattattatagcatgatgaagatttgatgttctttggttttatatgactgcattttctgctgttgattatctactgactactggtcattgctgtcattttgaagccgcctccaccaattaacgacacgaatccttataatgtatttaggccaagggagaaggcccacagacttcatacaagaagggtattcaattctatgactgtcctaatcttgttgtgtaaaagttctaattgacagattaattcttgtggaattttgtttgtgttaacggagaacctgtggcttcctgttttctttaacagatgccaaggagggaaaacaatgcacaggcatttgaaaagcttcgccaggtgaatcctaggacgaattttgctcttatttcttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0075D08.1" temp_strand="+" temp_description="C02HBa0075D08.1  AC215379.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0075D08 sequenced_by:kribb upload_account_name:korea">
        <position start="11696" stop="12792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11996" g_stop="12492" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0075D08.1" gen_strand="+" ref_id="SGN-M382-F" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0075D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M382-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11996" e_stop="12492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTGGTACTTTCAGCAATAACTCTTACATTCTACCTAGACCATTGGGTGATCAATGATTACTATGTTTTCTCCATACTAATGAAAAAATGTGCAAATCGTGTCATTATTATAGCATGATGAAGATTTGATGTTCTTTGGTTTTATATGACTGCATTTTCTGCTGTTGATTATCTACTGACTACTGGTCATTGCTGTCATTTTGAAGCCGCCTCCACCAGTTAACGACACGAATCCTTATAATGTATTTAGGCCAAGGGAGAAGGCCCACAGACTTCATACAAGAAGGGTATTCAATTCTATGACTGTCCTAATCTTGTTGTGTAAAATTTCTAATTGACAGTTTAATTCTTGTGGAATTTTGTTTGTGTTAACGGAGAACCTGTGGCTTCCTTTTTTCTTTAACAGATGCAAAGGAGGGAAAACAATGCACAGTCATTTGAAAAGCTTCGCCAGGTGAATCCAAGGACGAATTTTGCTCTTATTTCTTGATCT</genome_strand>
        <mrna_strand>TTTGACTGGTACTTTCAGCAATAACTCTTACATTCTACCTAGACCATTGGGTGATCAATGATTACTATGTTTTCTCCATACTAATGAAAAAATGTGCAAATCGTGTCATTATTATAGCATGATGAAGATTTGATGTTCTTTGGTTTTATATGACTGCATTTTCTGCTGTTGATTATCTACTGACTACTGGTCATTGCTGTCATTTTGAAGCCGCCTCCACCAATTAACGACACGAATCCTTATAATGTATTTAGGCCAAGGGAGAAGGCCCACAGACTTCATACAAGAAGGGTATTCAATTCTATGACTGTCCTAATCTTGTTGTGTAAAAGTTCTAATTGACAGATTAATTCTTGTGGAATTTTGTTTGTGTTAACGGAGAACCTGTGGCTTCCTGTTTTCTTTAACAGATGCCAAGGAGGGAAAACAATGCACAGGCATTTGAAAAGCTTCGCCAGGTGAATCCTAGGACGAATTTTGCTCTTATTTCTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M382-R" ref_strand="+" ref_description="SGN-M382-R TG567-R [rflp_markers_reverse]">
      <seq>ggagacaagcttgcatgcctgcagctgacaatttggctggatccagaggtttcgtaaacagcagagttggctcatttggatcctgtataacccaatttatgcagtctcgtcttcagtttaatattaacaaatggattaagttcaagtagctttcaactcacatgcaaagtaattcgaacactacatttgaaaacatgtgtgataaagtgagacagtataggaaagcaactttagagagtaggaaagcaccaatttatagagccatccatgggacacatttcttcgcttgaactctcgcttcatgattctaggagaagcagtcaccagcttcgggtccgggaaggtaatgttttgtgctatatgccgacggctagtagaaggatcatcagagtcgacaaattcgtcctcacttgaaccaaccttacttgggaaggaaggaaattcaggcagagtaaaggcatccacaaaaagctcagtttcattctggaatccaagaaaagtagattaattaattcatgtaacattcaaaatgaataacccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0075D08.1" temp_strand="-" temp_description="C02HBa0075D08.1  AC215379.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0075D08 sequenced_by:kribb upload_account_name:korea">
        <position start="14736" stop="13607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14436" g_stop="13907" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="544" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0075D08.1" gen_strand="-" ref_id="SGN-M382-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0075D08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M382-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14436" e_stop="13907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTGCAGCTGACAATTTGGCTGGATCCAGAGGTTTCGTAAACAGCAGAGTTGGCTCATTTGGATCCTGTATAACCCAATTTATGCAGTCTCGTCTTCAGTTTAATATTAACAAATGGATTAAGTTCAAGTAGCTTTCAACTCACATGCAAAGTAATTCGAACACTACATTTGAAAACATGTGTGATAAAGTGAGACAGTATAGGAAAGCAACTTTAGAGAGTAGGAAAGCACCAATTTATAGAGCCATCCATGGGACACATTTCTTCGCTTGAACTCTCGCTTCATGATTCTAGGAGAAGCAGTCACCAGCTTCGGGTCCGGGAAGGTAATGTTTTGTGCTATATGCCGACGACTAGTAGAAGGATCATCAGAGTCGACAAATTCGTCCTCACTTGAACCAACCTTACTTGGGAAGGAAGGAAATTCAGGCAGAGTAAAGGCATCCACAAAAAGCTCAGTTTCATTCTGGAATCCAAGAAAAGTAGATTAATTAATTCATGTAACATTCAAAATGAATAACCCGAAA</genome_strand>
        <mrna_strand>ATGCCTGCAGCTGACAATTTGGCTGGATCCAGAGGTTTCGTAAACAGCAGAGTTGGCTCATTTGGATCCTGTATAACCCAATTTATGCAGTCTCGTCTTCAGTTTAATATTAACAAATGGATTAAGTTCAAGTAGCTTTCAACTCACATGCAAAGTAATTCGAACACTACATTTGAAAACATGTGTGATAAAGTGAGACAGTATAGGAAAGCAACTTTAGAGAGTAGGAAAGCACCAATTTATAGAGCCATCCATGGGACACATTTCTTCGCTTGAACTCTCGCTTCATGATTCTAGGAGAAGCAGTCACCAGCTTCGGGTCCGGGAAGGTAATGTTTTGTGCTATATGCCGACGGCTAGTAGAAGGATCATCAGAGTCGACAAATTCGTCCTCACTTGAACCAACCTTACTTGGGAAGGAAGGAAATTCAGGCAGAGTAAAGGCATCCACAAAAAGCTCAGTTTCATTCTGGAATCCAAGAAAAGTAGATTAATTAATTCATGTAACATTCAAAATGAATAACCCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4008" ref_strand="+" ref_description="SGN-M4008 cLEX-13-I15 [est_clones]">
      <seq>tcacatctcagtttgttttgagaagtacagggaagggttagcagttagcactctgaaacatttttttatgagataaggaatttcattaaatgacatcatgaagtgtcagctccaacttcatcttgggtattctgcagtaaagaaaaaaatgtcacgaaggtatgatagccgaacaacaatcttctccccagaaggtcgtctctaccaagttgagtacgcaatggaggctattggaaatgcaggtagtgctataggcatcttgtccaaggatggggtggtgttggtaggtgaaaagaaagttacatctaagctgcttcagacctctacttcaagtgagaagatgtacaagatcgatgatcatgtggcatgcgctgtagctggaattatgtctgatgccaacattctgatcaacacagccaggtttcaggctcagcgctatacgttcgcttatcaagaacccatgccagttgagcaacttgtccagtcactatgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0075D08.1" temp_strand="+" temp_description="C02HBa0075D08.1  AC215379.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0075D08 sequenced_by:kribb upload_account_name:korea">
        <position start="42309" stop="44006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42608" g_stop="42733" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42734" i_stop="43336" i_length="603">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43337" g_stop="43706" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="496" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0075D08.1" gen_strand="+" ref_id="SGN-M4008" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0075D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M4008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42608" e_stop="42733"/>
          <exon e_start="43337" e_stop="43706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCTGTTAGTTTGTTTTGAGAAGTACAGGGAAGGGTTAGCAGTTAGCACTCTGAAACATTTTTTTATGAGATAAGGAATTTCATTAAATGACATCATGAAGTGTCAGCTCCAACTTCATCTTGGGTATGTATTTTGCACTACTTGGCATGTATTGGACTATGCCAAACTCCTGACTTATCTGCTGCATAGTTGAAACAACGAGGGTCTCAAAAAGAAATTCCAAAAAACTTGGAATACTATTTCTCAGGCCATTTGGTGGACAGTTGGCTTGAAAGAAATAGCAGAATTTTCAAGGGAAAAGAAGAAATATACTTAGCCTTGAACACAAACGTATTTATTTGCTAGCTTTTTGGTGAAACCTGGTTCTTGTACATGATGTAGATGCAATGTTAGATACAATCGAGGAGTTGCACCTTCTTTATTCATGCATTTGCTTAGTGCAAGCTCATCTATGAAATCTCTTCTTACCAGTATCACTGTACACACACTTCAAATGTCCACAAGTTTATCCATACAGGTGGGAAGTCCCTGAGGTTGACAATTTTCAACTTCAACTCTTGTGTGGACTTATATATTGTTTCGACTCAGTTTTGTATCTTTCTTTCTGTTGTGTTTGCCAACATGCTCGTTAGTTAGACTTATTCATGGGAAGGGTAAAAAAATGAACCATGTTTTATGTGCTCTGAAATTTTTATCTAACTAGCTCAAGTTATGTTAATTTATCAGGTATTCTGCAGTAAAGAAAAAAATGTCACGAAGGTATGATAGCCGAACAACAATCTTCTCCCCAGAAGGTCGTCTCTACCAAGTTGAGTACGCAATGGAGGCTATTGGAAATGCAGGTAGTGCTATAGGCATCTTGTCCAAGGATGGGGTGGTGTTGGTAGGTGAAAAGAAAGTTACATCTAAGCTGCTTCAGACCTCTACTTCAAGTGAGAAGATGTACAAGATCGATGATCATGTGGCATGCGCTGTAGCTGGAATTATGTCTGATGCCAACATTCTGATCAACACAGCCAGGTTTCAGGCTCAGCGCTATACGTTCGCTTATCAAGAACCCATGCCAGTTGAGCAACTTGTCCAGTCACTATGTGAT</genome_strand>
        <mrna_strand>TCACATCTCAGTTTGTTTTGAGAAGTACAGGGAAGGGTTAGCAGTTAGCACTCTGAAACATTTTTTTATGAGATAAGGAATTTCATTAAATGACATCATGAAGTGTCAGCTCCAACTTCATCTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTGCAGTAAAGAAAAAAATGTCACGAAGGTATGATAGCCGAACAACAATCTTCTCCCCAGAAGGTCGTCTCTACCAAGTTGAGTACGCAATGGAGGCTATTGGAAATGCAGGTAGTGCTATAGGCATCTTGTCCAAGGATGGGGTGGTGTTGGTAGGTGAAAAGAAAGTTACATCTAAGCTGCTTCAGACCTCTACTTCAAGTGAGAAGATGTACAAGATCGATGATCATGTGGCATGCGCTGTAGCTGGAATTATGTCTGATGCCAACATTCTGATCAACACAGCCAGGTTTCAGGCTCAGCGCTATACGTTCGCTTATCAAGAACCCATGCCAGTTGAGCAACTTGTCCAGTCACTATGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7938" ref_strand="+" ref_description="SGN-M7938 C2_At3g47630 [cosii_markers]">
      <seq>gttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagttcttcagggaaggtcgagctgttgtatgtttagaacatcctggtgaaaagaagttaatcaatgtttctaaacaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0075D08-XIan2/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0075D08.1" temp_strand="+" temp_description="C02HBa0075D08.1  AC215379.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0075D08 sequenced_by:kribb upload_account_name:korea">
        <position start="58469" stop="61404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58776" g_stop="58880" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="183" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58881" i_stop="58967" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58968" g_stop="59496" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="712" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59497" i_stop="60145" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60146" g_stop="60251" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="818" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60252" i_stop="60567" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60568" g_stop="61111" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="1362" r_length="544" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0075D08.1" gen_strand="+" ref_id="SGN-M7938" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1284</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0075D08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58776" e_stop="58880"/>
          <exon e_start="58968" e_stop="59496"/>
          <exon e_start="60146" e_stop="60251"/>
          <exon e_start="60568" e_stop="61111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</genome_strand>
        <mrna_strand>GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11996" PGL_stop="12492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11996" e_stop="12492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="11996" e_stop="12492" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11996" stop="12492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M382-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACTGGTACTTTCAGCAATAACTCTTACATTCTACCTAGACCATTGGGTGATCAATGATTACTATGTTTTCTCCATACTAATGAAAAAATGTGCAAATCGTGTCATTATTATAGCATGATGAAGATTTGATGTTCTTTGGTTTTATATGACTGCATTTTCTGCTGTTGATTATCTACTGACTACTGGTCATTGCTGTCATTTTGAAGCCGCCTCCACCAGTTAACGACACGAATCCTTATAATGTATTTAGGCCAAGGGAGAAGGCCCACAGACTTCATACAAGAAGGGTATTCAATTCTATGACTGTCCTAATCTTGTTGTGTAAAATTTCTAATTGACAGTTTAATTCTTGTGGAATTTTGTTTGTGTTAACGGAGAACCTGTGGCTTCCTTTTTTCTTTAACAGATGCAAAGGAGGGAAAACAATGCACAGTCATTTGAAAAGCTTCGCCAGGTGAATCCAAGGACGAATTTTGCTCTTATTTCTTGATCT</gDNA_template>
            <first_frame> F  D  W  Y  F  Q  Q  *  L  L  H  S  T  *  T  I  G  *  S  M  I  T  M  F  S  P  Y  *  *  K  N  V  Q  I  V  S  L  L  *  H  D  E  D  L  M  F  F  G  F  I  *  L  H  F  L  L  L  I  I  Y  *  L  L  V  I  A  V  I  L  K  P  P  P  P  V  N  D  T  N  P  Y  N  V  F  R  P  R  E  K  A  H  R  L  H  T  R  R  V  F  N  S  M  T  V  L  I  L  L  C  K  I  S  N  *  Q  F  N  S  C  G  I  L  F  V  L  T  E  N  L  W  L  P  F  F  F  N  R  C  K  G  G  K  T  M  H  S  H  L  K  S  F  A  R  *  I  Q  G  R  I  L  L  L  F  L  D   </first_frame>
            <second_frame>  L  T  G  T  F  S  N  N  S  Y  I  L  P  R  P  L  G  D  Q  *  L  L  C  F  L  H  T  N  E  K  M  C  K  S  C  H  Y  Y  S  M  M  K  I  *  C  S  L  V  L  Y  D  C  I  F  C  C  *  L  S  T  D  Y  W  S  L  L  S  F  *  S  R  L  H  Q  L  T  T  R  I  L  I  M  Y  L  G  Q  G  R  R  P  T  D  F  I  Q  E  G  Y  S  I  L  *  L  S  *  S  C  C  V  K  F  L  I  D  S  L  I  L  V  E  F  C  L  C  *  R  R  T  C  G  F  L  F  S  L  T  D  A  K  E  G  K  Q  C  T  V  I  *  K  A  S  P  G  E  S  K  D  E  F  C  S  Y  F  L  I  </second_frame>
            <third_frame>   *  L  V  L  S  A  I  T  L  T  F  Y  L  D  H  W  V  I  N  D  Y  Y  V  F  S  I  L  M  K  K  C  A  N  R  V  I  I  I  A  *  *  R  F  D  V  L  W  F  Y  M  T  A  F  S  A  V  D  Y  L  L  T  T  G  H  C  C  H  F  E  A  A  S  T  S  *  R  H  E  S  L  *  C  I  *  A  K  G  E  G  P  Q  T  S  Y  K  K  G  I  Q  F  Y  D  C  P  N  L  V  V  *  N  F  *  L  T  V  *  F  L  W  N  F  V  C  V  N  G  E  P  V  A  S  F  F  L  *  Q  M  Q  R  R  E  N  N  A  Q  S  F  E  K  L  R  Q  V  N  P  R  T  N  F  A  L  I  S  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0075D08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14436" PGL_stop="13907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14436" e_stop="13907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="14436" e_stop="13907" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14436" stop="13907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M382-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCCTGCAGCTGACAATTTGGCTGGATCCAGAGGTTTCGTAAACAGCAGAGTTGGCTCATTTGGATCCTGTATAACCCAATTTATGCAGTCTCGTCTTCAGTTTAATATTAACAAATGGATTAAGTTCAAGTAGCTTTCAACTCACATGCAAAGTAATTCGAACACTACATTTGAAAACATGTGTGATAAAGTGAGACAGTATAGGAAAGCAACTTTAGAGAGTAGGAAAGCACCAATTTATAGAGCCATCCATGGGACACATTTCTTCGCTTGAACTCTCGCTTCATGATTCTAGGAGAAGCAGTCACCAGCTTCGGGTCCGGGAAGGTAATGTTTTGTGCTATATGCCGACGACTAGTAGAAGGATCATCAGAGTCGACAAATTCGTCCTCACTTGAACCAACCTTACTTGGGAAGGAAGGAAATTCAGGCAGAGTAAAGGCATCCACAAAAAGCTCAGTTTCATTCTGGAATCCAAGAAAAGTAGATTAATTAATTCATGTAACATTCAAAATGAATAACCCGAAA</gDNA_template>
            <first_frame> M  P  A  A  D  N  L  A  G  S  R  G  F  V  N  S  R  V  G  S  F  G  S  C  I  T  Q  F  M  Q  S  R  L  Q  F  N  I  N  K  W  I  K  F  K  *  L  S  T  H  M  Q  S  N  S  N  T  T  F  E  N  M  C  D  K  V  R  Q  Y  R  K  A  T  L  E  S  R  K  A  P  I  Y  R  A  I  H  G  T  H  F  F  A  *  T  L  A  S  *  F  *  E  K  Q  S  P  A  S  G  P  G  R  *  C  F  V  L  Y  A  D  D  *  *  K  D  H  Q  S  R  Q  I  R  P  H  L  N  Q  P  Y  L  G  R  K  E  I  Q  A  E  *  R  H  P  Q  K  A  Q  F  H  S  G  I  Q  E  K  *  I  N  *  F  M  *  H  S  K  *  I  T  R   </first_frame>
            <second_frame>  C  L  Q  L  T  I  W  L  D  P  E  V  S  *  T  A  E  L  A  H  L  D  P  V  *  P  N  L  C  S  L  V  F  S  L  I  L  T  N  G  L  S  S  S  S  F  Q  L  T  C  K  V  I  R  T  L  H  L  K  T  C  V  I  K  *  D  S  I  G  K  Q  L  *  R  V  G  K  H  Q  F  I  E  P  S  M  G  H  I  S  S  L  E  L  S  L  H  D  S  R  R  S  S  H  Q  L  R  V  R  E  G  N  V  L  C  Y  M  P  T  T  S  R  R  I  I  R  V  D  K  F  V  L  T  *  T  N  L  T  W  E  G  R  K  F  R  Q  S  K  G  I  H  K  K  L  S  F  I  L  E  S  K  K  S  R  L  I  N  S  C  N  I  Q  N  E  *  P  E  </second_frame>
            <third_frame>   A  C  S  *  Q  F  G  W  I  Q  R  F  R  K  Q  Q  S  W  L  I  W  I  L  Y  N  P  I  Y  A  V  S  S  S  V  *  Y  *  Q  M  D  *  V  Q  V  A  F  N  S  H  A  K  *  F  E  H  Y  I  *  K  H  V  *  *  S  E  T  V  *  E  S  N  F  R  E  *  E  S  T  N  L  *  S  H  P  W  D  T  F  L  R  L  N  S  R  F  M  I  L  G  E  A  V  T  S  F  G  S  G  K  V  M  F  C  A  I  C  R  R  L  V  E  G  S  S  E  S  T  N  S  S  S  L  E  P  T  L  L  G  K  E  G  N  S  G  R  V  K  A  S  T  K  S  S  V  S  F  W  N  P  R  K  V  D  *  L  I  H  V  T  F  K  M  N  N  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0075D08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14191" stop="13943"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHPWDTFLRLNSRFMILGEAVTSFGSGKVMFCAICRRLVEGSSESTNSSSLEPTLLGKEGNSGRVKASTKSSVSFWNPRKVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42608" PGL_stop="43706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42608" e_stop="42733"/>
            <exon e_start="43337" e_stop="43706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.996" e_score="0.960"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="42608" e_stop="42733" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42734" i_stop="43336" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43337" e_stop="43706" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42608" stop="42733"/>
              <exon start="43337" stop="43706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCCTGTTAGTTTGTTTTGAGAAGTACAGGGAAGGGTTAGCAGTTAGCACTCTGAAACATTTTTTTATGAGATAAGGAATTTCATTAAATGACATCATGAAGTGTCAGCTCCAACTTCATCTTGG : GTATTCTGCAGTAAAGAAAAAAATGTCACGAAGGTATGATAGCCGAACAACAATCTTCTCCCCAGAAGGTCGTCTCTACCAAGTTGAGTACGCAATGGAGGCTATTGGAAATGCAGGTAGTGCTATAGGCATCTTGTCCAAGGATGGGGTGGTGTTGGTAGGTGAAAAGAAAGTTACATCTAAGCTGCTTCAGACCTCTACTTCAAGTGAGAAGATGTACAAGATCGATGATCATGTGGCATGCGCTGTAGCTGGAATTATGTCTGATGCCAACATTCTGATCAACACAGCCAGGTTTCAGGCTCAGCGCTATACGTTCGCTTATCAAGAACCCATGCCAGTTGAGCAACTTGTCCAGTCACTATGTGAT</gDNA_template>
            <first_frame> A  P  V  S  L  F  *  E  V  Q  G  R  V  S  S  *  H  S  E  T  F  F  Y  E  I  R  N  F  I  K  *  H  H  E  V  S  A  P  T  S  S  W  :  V  F  C  S  K  E  K  N  V  T  K  V  *  *  P  N  N  N  L  L  P  R  R  S  S  L  P  S  *  V  R  N  G  G  Y  W  K  C  R  *  C  Y  R  H  L  V  Q  G  W  G  G  V  G  R  *  K  E  S  Y  I  *  A  A  S  D  L  Y  F  K  *  E  D  V  Q  D  R  *  S  C  G  M  R  C  S  W  N  Y  V  *  C  Q  H  S  D  Q  H  S  Q  V  S  G  S  A  L  Y  V  R  L  S  R  T  H  A  S  *  A  T  C  P  V  T  M  *  </first_frame>
            <second_frame>  P  L  L  V  C  F  E  K  Y  R  E  G  L  A  V  S  T  L  K  H  F  F  M  R  *  G  I  S  L  N  D  I  M  K  C  Q  L  Q  L  H  L  G :   Y  S  A  V  K  K  K  M  S  R  R  Y  D  S  R  T  T  I  F  S  P  E  G  R  L  Y  Q  V  E  Y  A  M  E  A  I  G  N  A  G  S  A  I  G  I  L  S  K  D  G  V  V  L  V  G  E  K  K  V  T  S  K  L  L  Q  T  S  T  S  S  E  K  M  Y  K  I  D  D  H  V  A  C  A  V  A  G  I  M  S  D  A  N  I  L  I  N  T  A  R  F  Q  A  Q  R  Y  T  F  A  Y  Q  E  P  M  P  V  E  Q  L  V  Q  S  L  C  D </second_frame>
            <third_frame>   P  C  *  F  V  L  R  S  T  G  K  G  *  Q  L  A  L  *  N  I  F  L  *  D  K  E  F  H  *  M  T  S  *  S  V  S  S  N  F  I  L   : G  I  L  Q  *  R  K  K  C  H  E  G  M  I  A  E  Q  Q  S  S  P  Q  K  V  V  S  T  K  L  S  T  Q  W  R  L  L  E  M  Q  V  V  L  *  A  S  C  P  R  M  G  W  C  W  *  V  K  R  K  L  H  L  S  C  F  R  P  L  L  Q  V  R  R  C  T  R  S  M  I  M  W  H  A  L  *  L  E  L  C  L  M  P  T  F  *  S  T  Q  P  G  F  R  L  S  A  I  R  S  L  I  K  N  P  C  Q  L  S  N  L  S  S  H  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0075D08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42684" stop="42733"/>
                    <exon start="43337" stop="43706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GISLNDIMKCQLQLHLGYSAVKKKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARFQAQRYTFAYQEPMPVEQLVQSLCD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="58776" PGL_stop="61111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58776" e_stop="58880"/>
            <exon e_start="58968" e_stop="59496"/>
            <exon e_start="60146" e_stop="60251"/>
            <exon e_start="60568" e_stop="61111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58776" e_stop="58880" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="58881" i_stop="58967" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58968" e_stop="59496" e_length="529"/>
          </exon>
          <intron i_serial="2" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59497" i_stop="60145" i_length="649"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60146" e_stop="60251" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.843">
            <gDNA_intron_boundary i_start="60252" i_stop="60567" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="60568" e_stop="61111" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58776" stop="58880"/>
              <exon start="58968" stop="59496"/>
              <exon start="60146" stop="60251"/>
              <exon start="60568" stop="61111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG : GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG : GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG : GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</gDNA_template>
            <first_frame> V  N  I  L  T  D  N  L  D  I  K  S  V  N  S  V  N  L  K  A  A  T  S  A  A  L  L  L  L  P  S  K  F  T  E  :  E  D  L  Y  A  K  I  C  S  L  S  Y  T  G  D  L  R  M  L  F  A  E  D  K  N  K  V  D  L  T  F  E  W  V  *  I  L  K  F  C  G  P  D  C  T  T  W  K  Y  Q  S  T  S  K  F  I  V  *  L  G  S  F  S  I  L  *  F  Y  I  T  S  S  G  S  M  N  I  S  *  F  A  S  H  I  Y  K  I  S  F  L  D  *  N  L  N  L  N  F  *  H  S  I  S  *  C  I  G  N  F  H  A  T  L  I  D  *  I  D  S  S  I  P  C  T  *  I  S  S  L  H  I  D  P  G  E  Q  N  C  T  R  T  V  P  F  I  *  G  N  V  *  A  I  S  G  R  I  R  G  Q  K  L  V  E  I  F  S  S  W  *  *  A  S  K  H  I  S   : G  L  W  I  I  C  C  F  H  L  G  F  F  S  S  F  I  N  Q  K  *  D  G  H  E  T  W  R  K  E  N  S  G  *  L  W :   *  S  *  T  T  N  S  D  W  F  K  R  T  G  C  *  V  H  A  E  A  S  *  T  K  G  Y  V  F  *  H  K  A  G  C  C  R  F  I  D  C  W  C  C  S  W  S  Q  I  C  S  K  Q  D  A  Q  G  L  E  I  L  G  V  I  V  S  C  F  W  V  T  S  R  L  L  T  G  S  D  M  G  I  *  P  Q  P  Q  L  H  L  M  T  C  G  S  T  M  E  F  L  A  W  I  E  F  A  D  S  P  A  A  F  S  K  *  D  K  *  N  L  R  G  E  I  T  N  N  P  S  K  N  F  F  *  K  F  S  V  H  L  Y  S  F  L  L  F  I  S  K  V  G  R  V  L  Q  G  R  S  S  C  C  M  F  R  T  S  W  *  K  E  V  N  Q  C  F  *  T  R  N  C  Y </first_frame>
            <second_frame>  *  T  F  L  R  I  T  W  I  *  K  A  *  T  A  *  I  *  K  L  Q  L  L  L  L  F  S  F  C  H  L  N  S  R  R :   K  I  Y  M  P  K  S  V  A  S  H  I  Q  V  T  C  V  C  F  L  Q  R  T  K  I  R  *  I  *  H  L  S  G  F  K  F  *  N  F  V  A  L  T  V  P  H  G  S  I  N  L  Q  V  S  L  *  C  N  W  V  V  S  Q  F  Y  S  F  I  L  L  P  A  D  Q  *  I  S  V  N  L  H  L  I  S  T  K  Y  P  F  W  T  R  I  *  I  S  T  F  S  I  V  S  H  S  A  L  A  T  F  M  P  H  *  L  I  E  L  I  L  P  F  R  V  H  E  F  L  H  C  I  L  I  Q  V  N  K  I  V  Q  G  Q  F  H  L  F  E  E  M  Y  K  P  F  L  E  E  Y  E  A  K  N  L  L  R  F  S  V  A  G  D  K  Q  V  N  I  F  Q  :  D  C  G  L  S  A  A  S  T  L  V  S  S  L  P  S  S  I  R  S  E  M  A  M  K  L  G  E  K  R  I  L  D  D  S   : G  R  V  R  Q  Q  I  V  I  G  S  K  E  Q  A  A  E  C  M  Q  R  L  V  R  R  K  V  M  F  S  S  T  R  Q  A  V  A  G  L  L  T  A  G  A  V  H  G  V  R  Y  V  A  N  K  M  R  K  A  W  K  S  W  V  *  L  F  P  V  F  G  *  H  H  V  F  *  L  V  Q  T  W  G  Y  S  H  N  H  S  Y  T  *  *  H  A  V  Q  P  W  S  S  *  H  G  *  S  L  P  T  L  L  L  L  F  Q  N  K  T  N  R  I  *  G  G  K  *  P  T  T  H  Q  K  I  S  S  E  S  F  L  F  T  C  I  L  F  F  Y  L  F  Q  R  W  E  E  F  F  R  E  G  R  A  V  V  C  L  E  H  P  G  E  K  K  L  I  N  V  S  K  Q  G  I  A   </second_frame>
            <third_frame>   E  H  S  Y  G  *  L  G  Y  K  K  R  E  Q  R  E  S  E  S  C  N  F  C  C  S  S  P  F  A  I  *  I  H  G   : G  R  F  I  C  Q  N  L  *  P  L  I  Y  R  *  L  A  Y  A  F  C  R  G  Q  K  *  G  R  F  D  I  *  V  G  L  N  F  K  I  L  W  P  *  L  Y  H  M  E  V  S  I  Y  K  *  V  Y  S  V  I  G  *  F  L  N  F  I  V  L  Y  Y  F  Q  R  I  N  E  Y  Q  L  I  C  I  S  Y  L  Q  N  I  L  F  G  L  E  F  E  S  Q  L  L  A  *  Y  L  I  V  H  W  Q  L  S  C  H  I  N  *  L  N  *  F  F  H  S  V  Y  M  N  F  F  I  A  Y  *  S  R  *  T  K  L  Y  K  D  S  S  I  Y  L  R  K  C  I  S  H  F  W  K  N  T  R  P  K  T  C  *  D  F  Q  *  L  V  I  S  K  *  T  Y  F  R :   I  V  D  Y  L  L  L  P  P  W  F  L  L  F  L  H  Q  S  E  V  R  W  P  *  N  L  E  K  R  E  F  W  M  T  L  :  V  E  L  D  N  K  *  *  L  V  Q  K  N  R  L  L  S  A  C  R  G  *  L  D  E  R  L  C  F  L  A  Q  G  R  L  L  Q  V  Y  *  L  L  V  L  F  M  E  S  D  M  *  Q  T  R  C  A  R  L  G  N  L  G  C  N  C  F  L  F  L  G  D  I  T  S  F  N  W  F  R  H  G  D  I  A  T  T  T  V  T  P  N  D  M  R  F  N  H  G  V  L  S  M  D  R  V  C  R  L  S  C  C  F  F  K  I  R  Q  I  E  F  E  G  G  N  N  Q  Q  P  I  K  K  F  L  L  K  V  F  C  S  L  V  F  F  S  F  I  Y  F  K  G  G  K  S  S  S  G  K  V  E  L  L  Y  V  *  N  I  L  V  K  R  S  *  S  M  F  L  N  K  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0075D08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59308" stop="59496"/>
                    <exon start="60146" stop="60251"/>
                    <exon start="60568" stop="60758"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIELILPFRVHEFLHCILIQVNKIVQGQFHLFEEMYKPFLEEYEAKNLLRFSVAGDKQVNIFQDCGLSAASTLVSSLPSSIRSEMAMKLGEKRILDDSGRVRQQIVIGSKEQAAECMQRLVRRKVMFSSTRQAVAGLLTAGAVHGVRYVANKMRKAWKSWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0075D08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58776" stop="58880"/>
                    <exon start="58968" stop="59072"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNILTDNLDIKSVNSVNLKAATSAALLLLPSKFTEEDLYAKICSLSYTGDLRMLFAEDKNKVDLTFEWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 7872 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1968 bytes was the average size of a spliced alignment
$ 9184 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2296 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 4 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-28 01:39:12
-->
