<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 09:01:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563634" ref_strand="+" ref_description="SGN-U563634 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157358991|emb|CAO66893.1| (e_value=1e-87) unnamed; (*ATH) AT5G46420.1 (e_value=2e-78)  Symbol: None | 16S rRNA processing protein RimM family, contains weak similarity to Swiss-Prot:O74933 UDP-N-acetylglucosamine pyrophosphorylase (Candida albicans); contains Pfam profiles PF01782: 16S rRNA processing protein RimM, PF05239: PRC-barrel... ; (*SWP) sp|Q7V4K0|RIMM_PROMM (e_value=1e-30) Probable 16S rRNA-processing protein rimM OS=Prochlorococcus marinus (strain MIT 9313) GN=rimM; ">
      <seq>agaaaacatgcaaggctcctctgctctttcctgttcttcaaattctatctctgctccagttggtctttgttgttctcaaagattaacacttccttttcgaaatcaaagaattgggtttctggaaaatccatcaagcttgaagattttccattttcaccgaaacactaccctccctttgctgaactgcactgctacggaagagatcgtggaggctagtgaaacagagggattatttgttgaaactgggtacatatatagtgttcatgggcttcaaggtgaggttcgagtaaaagcgacaactgatttccctgaattgcgattttcccagccaggaaggcgatggttgaggcagcaagttacagggagagatatgattcaagaaatcgaactagtggagggaagaggtcatccaggacagaagagttggatacttaaattccacgagattaacacaattgagcaggcccaaaaacttgtggggtcggccttactggtgaagaatgaagatagaccaatcctggaggaaggtgaattttacacccctgaccttgttgggatgaaagtatttctaaaggaaactagagaactggtaggaactgttattaatgttttcaacagtggagctagtgatctcctacatgttgagcttctaccgaatcaaaatgcaagaccacagttggaaggaagtgcatctggtcctcttgtatgggtccctttcgttgaagcaattgttccaaatattgatttgagtaaaagggaaatgctgattacacctccaaagggtcttttagaattgaacatccgtgcagatgagaggtccaagaaagagaggcgacagcttgaatggaaagagagaaaaaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="8569" stop="14468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8869" g_stop="9059" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10854" g_stop="10990" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="328" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10991" i_stop="11081" i_length="91">
            <donor d_prob="0.017" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11082" g_stop="11216" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="463" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413">
            <donor d_prob="0.584" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11630" g_stop="11740" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="574" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11741" i_stop="11850" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11851" g_stop="12117" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="841" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12118" i_stop="14143" i_length="2026">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14144" g_stop="14168" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="866" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U563634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8869" e_stop="9059"/>
          <exon e_start="10854" e_stop="10990"/>
          <exon e_start="11082" e_stop="11216"/>
          <exon e_start="11630" e_stop="11740"/>
          <exon e_start="11851" e_stop="12117"/>
          <exon e_start="14144" e_stop="14168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACATGCAAGGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTGGTAAATCTTCTTTCCATTAAAGTTTTAATCTTTATTGATTTTTGAGTTTCCATAATGCTTACTTTGATTTTTTCTGACTTTTTCCGAACTGGGTTGTGTTTATTTTGGTAGTATCAGAAATTACTCACTTCCAAGTATATACTGTTTTCAACTGAATTCTGAAATATGTTCTCAAGATGTTATGCTTTGCTTTTGTGGATTTTATGTTCCTTTGAATTATCATTAGTATTATGTTCTGACGAAGTGGTGTCCCTTGTCCAGCCAGCTTGGCAAGATCCTCTTGGTCTGGTTTAGAGATTGTATGTCGATATAAAAATAAGCCCGTGGCTGTGAGATTTAGAGAGTCTGAATTTTTCAGAGAACCCCTAATTTGTTTTAAAGAAAAATTATTGAGTATTGGAGTGAAATGGGTCCAAATATGGGGTGAATGGATGTTGAGGGTTAATATAGTGGACCAAAATTAGTTTAGGATTAACAAGTAGTAGTAGTAGACGACTAGTTTTTGCTGCTGAATAACACGTCAACATACCCAGTGTAGTCCGGGGGGGGGGTCTGGAGTGGGTAGAGTGTACGTAGGCCTTACCCCTACCTCACGGAGGCCTCTGCTGAATACATGCTGCTTAGTATAAAAGTATAGGTACATAGTATGGGATTTGAGACTTATCATTGGACATGTCCTTCTCAGTTCAGCTTATTTCTACATTCCTCGACTTCGTTTTGTTTCTTTTTGTAAGTTTGTTCTGTGGTTTGTCTATTTGTTGGTTCTAGTTTTGAAGCAGGAGCATCTTCAGATAATTCTATCAAGTTAATTGTACTTAAAGTTAGTCATTACTTCACAGTTAGGCAAATTAAGTTAATGTTGGCAACACATTATCAGATTAATGTAAGGTAGATTTATCTAATATCAATTTCTTGGGTCAGATCTTTTGCTTTTTTTAGTTTGCTATTTATGTCTTGCGTAGAAGTAAAGCGTCTTGGCAACTCATATTATGCGGCTTTGTCCCACAGTGACACTTCTGGCTTCATACTTAATCTTGTAGTTGCACTCTGACAATTGCTTTAGAATCCATACCGAAGATCGAAAGTGAGAGCATCATTATTTAAGGCAAAAGATGCAAAAGTACAGTAGGAGATGAATATTTGTTCTTTTGGTAGGTTGGATATACATGAACGGTAACTCAAGACACATTTATGTTTCTTGCCTATCCCAAACAAGGTACAGTGACCACGACCCATCAGAAGACACTAGGTTTAATAGAAGTTTTGGAATTGAGCAAAACCTTGAATTTTGTGCTGTTATTTGCTGTTCTATTGACATTTCACTTGAGCTGTTTCCTTCAATGACACACCGGCTAATCATTACTTTTATCTTCTGCAAGTATATGTTGTATATTTGAGCTATCTTAAGTATCACATCTTGTGATTGTTGTCATTCTACACCCTTAAGCTTAAGCAAGTGTGAGGTAATCTTTGAATTTGTAAATTCTTACAAATTCCAGTTAAAAGTTTCCCGAATCAAGTTAATCACATAACATAGAAAAATCATGTATGATGTTCTTCCTGGAAAGATATCATCTCATAATAATGTACGCTTTCTACAAATTTGTTACTCATCATGATATACCAAGTCATGTGAATTAGTTATCAGTTACAGAACGCAGTGCTTAGACTGTCAAGCATCTTAATTATGCTAGAGTATCACAGTAGTTTTCATTCACTAGAAAGTTTTCTTTATAGTTTCTGCAAAGTCACTTGGTCCTCAAGTTAAGCACCTTTATTGTTTGTTCATTTCAGCTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAGGTAGAAAGCATCAGGAACTTAATAATGGGACTGGTTTCTCGTTTTTGGCCTTCATGAGAATATCCTTTTCATGAATTCACTCTTAATTTAGCCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAGGTGATCTCCGTGTAATTATGCTGTACATTGGGTTTCCACAACCCACACTATTGTTTTTCCTCATATATTATGGAATGCAGTAAATATGTCTTTTGATTATAATGACCTTATCTTTCCTGTGTTAAATTAATTTTAAATCATGCATGTACAATCACAGTATTTCAATACAGCAAAGTGGCAGTGTCATGTAAGAAAGTTGGAAGAATTTTATATGACTTTACTACCGAATCGAAAATATTTGGTTCATCTTTTGTAAATAAAGGCAAATTTCACTCTGCCCATTAAATACGGAACCATTACTACAATTCTAATGCCAGTTTTATGTATCACCTGAGACATATTTTGGAAATGGACTTGATCTTTATCTTAGGGCATGGCCGTTTGATATATCTTGTTTTCTCGATTCTCCTCAGGCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAGGTTTGTTTCCACGGCTTCTGACTTTCATAAAAGGCACACAGTTCTTTAGTTTAATTTCTATTGGAGCTGAGTGGCACTTAAAAGGGATCTTCTATTTTTATGTGCTCCAGGAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTTGTGAGTTGCTTTTCTTTTTTCTCCCATTTTGCCAGAATTTATCATATAGGTCACATGCTATTGCGGAGTGCTGTCAGTGTGGTTTCAGAAATCATAATTTCTTTTAAAAGAAATTTTATTTATCTTTGATTCTTTTCTAGAGAAGCAACACCTTGTGAGTTGATTTTGTTTGTGTTCACTTTTCTAGAATCAGAGTGCTGTCTCAATCATTTAAGAAGTCACTTTGCCATTTTCAAAGAAATTCTAGCTACTTTTTCTCAAGTACTCTGATTGGGTTTTTTCATATTCATTATTGGTTACAAGTTACTCTTGTGTGGTTTACTTTATAAATTTGACCAATCACAGACGTGCGTAAAGCAGTCAAGTTTAATTTTCTTCTTCTTGGCGCCTTCTCTAGTACTCCTTATGCTTCGTCTTGCTACACACCTCTTTCAGGGGTAGACCAGATACAATACCTTCAGTTTGGAAGTAATTAACCAAAAAATTATAGTTTTCCTTAGATTTTTGGTAAGGAATTATAGCTGCCCTCAAAACACATTTTGTTTCATCTCTTTCGGTATCTTCCTGGATTTTTGGCAGTATAGAAGCCTCCACTTTGTTCATCCCATTTGAATCTATTATCTTCACAGGGAAGTCCCTGAAAACTCCCATTTGTACTGTAAAATTCAGCAACTGTCACCAATTGCCAATCGTTGAAATGTCTTCTGAATCTGATGTTTCATATCTCATAGTCCCTGGATTCTGCTACAGTAGCTTCAGGGTACTGAATCAAGTTGAAAAAACAAAAGGAGTTGTATTTTTGGATGATTGTGGACTATCCATTTGTCATGACATAAGAGACTTTCCTTCCATTACTCCCGATGATGCTTGTTATTTGCAAAACTCAGACCACATCTTGCCAATAGGTGGTTTCTTATCTTAACCTATATGTGTTGTTTGCATCCTCTGCCAGGTGTAATCATTTCTAATCTTGCCCAACATCTTTTAAAGACAAATACATCTCAATGTTCACATTTCTATGACACTCATCCTATGAATAATTAGACCTTAGCAGCCTAACTTTTTTTTTTTTATCAAAGCCATGGAAACCCAACATTTACTCCAATATAACATTGCTGGCCTTACTGCCGTTAAATAATTTTTTTTAGGTACTTTGTAGTTGCACGGAAATCCACATCACTTATTCATTTCAGTCATCCTATATTTAATTTCTGTGTTATATCTTCATCTATCATGTCTTTTTTCTTTTAAGGCCAAGTTTAACGGGGTTTATCTTTATAGCTGCTTTACAGGTTTTTGGTCTGTTAGCTTCATGTTACTTTCATGTTTGAAGCAACTTTATTTTCTCTATAACCTTTGCTCCTTGATGCCTTTCTAATACAGTTTAGTCTTCACCAAAAAAAAAAATCTAAAAAGATTCTGCATTTAGGCACAACAATTACATCGAACCTCACTTTGCCTTCATTCTTACTATGGAGGCAAAACTTGCATATTAGTTCTACTTATCCTAAAACCCTTACTTAATGGAGTGTATTTCAATATTTTCAACTTTTTATTGATTCACTCCCTCATTTAATCAATTGACAATTATCTGCAAATAACAGTTCCCGTATAAAGTGAAGTTAGATGACTGTAGCCACTTGTTAGAAGATGGCGGTTGCGCCACCATATATTCACATCATTAATAGTTGTTAACTCCACAATGGTGAGATAAGAACAAGGTGAATTTGGTTTGTGCAGAAGGATAAATTCTTTAACATCTAAATAAATGGTTACCCACTTCTCCTCATAAGAATGTAGTGCAGTGATTATCATTAAATAGATGTCATAATTTTCTTATCCGAGCTCAATGACAAAGTAATTCTTGATGGAGAGTTCATACTTAGCTGTTCCAGATGAGTGCCGGTCATTAAGTAATGCCTCTAAAGTTGCTTTTCTCTCCGGTGCTCCTCTGTGATTGTCGTAGGTACTAAATCTATAGCATTGATCTAGTGTGTTTGGCCTACTTAACCTTCTTCTTTTTCAGGAATGGAAAGAGAGAAAAAAGTCTC</genome_strand>
        <mrna_strand>AGAAAACATGCAAGGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAG...........................................................................................CCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAG..............................................................................................................GAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGAAAGAGAGAAAAAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579646" ref_strand="+" ref_description="SGN-U579646 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>gtgagccccttttcctttgtttgttcttttcaatgtttaatttctgtacacaatgtttgttcttttgtaatcgaaggtgaagtagagttacaatggcgattcctctactgaaaaagaaagttatcaagaaaagggtgaagcaattcaagaggcatcagagtgataggagaatcactgttaaggtattgttttttatttcttgaaacccctcttttgcattaagctctattgggtaatagtgaaaaaagctcgtctctttatgggttgacaaaaaaattggattttgttgggttttttgtgttcgagagggaaaatgatgagagttattgtcgccccagtcttaatttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttagtgtttagtcactgatgatttttttcataattgctgattgaccagggattaatacaagaatatcaccatatttctgctgggattgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="22665" stop="25983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22965" g_stop="23338" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23339" i_stop="25328" i_length="1990">
            <donor d_prob="0.678" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25329" g_stop="25683" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="726" r_length="354" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U579646" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22965" e_stop="23338"/>
          <exon e_start="25329" e_stop="25683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACACATCATATCTGATTCTTCTTGAACAAATAATTTGGAACTTTTTTTTGTTTGGTTTTAGCGTTTTCCTTTTGATGTTAAATTTTATTTGTGGACAATGTGCTTATAAGATGTGAGGATGCTTATCCACGTATTCTGTAGAGTTCAATGATGAATTCAAAACATGCACTACCATCTGATCTTATAGCATTTGTCATCCTTTTAAGGTCTTGGGTTTGTACCTTCTTTTTTTTGTGGTTTTGTTCAGTTTCTTGAACATTAGGATTCAAATTTGTTTCTTTGCTTACTATTAGTATTATCTATACTATTTTTGTTTGTTAAAAATGGAAAAATGATGATAGTTCATGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTTGCAAGGTGGTGATTGACTCATTATATCTGATTCTTTCTAAACAGTAATGTTTGTTTTATACTTGTTTGGTTTTGGTTTTATTTTGTTTTTTGATGCTAAGCTTGTTTATGGCGACATGCTATATGGTGTGATGATGTGTATCCACCTTTTCTGTAGGGTTCAATGATGAATTCAAATACATGCACTACCATCTGATCTTATGGCATATTTCGCCTACTTAAATCTGTATTGTGGTTTGTTTTATAAGTTCTGCAGTGTTAATTCACTGATGCAGTCAATGATGATTTTTTCCCAAATTGCTGAATGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGATTGCATCTAGAACAATTTTATGCAGTATTCTCCATTTGTTTTTAATCACTTCCTCCAGTTTTCTATCAAATTATTTGTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAATTATACTCTAGTGCAGGTCTTGCGACACAGTTGCTTCATTATCACAATAAGCTTTCTGTTACTTTAACCCTGCTTACATTCTATTATTTATAAACATCATATTCTTGGTTTTAGCTTCGATTTTACTATATTTTTCGGAAATAGTGGAAACCATTATGTTTTTTTGTGTTACACATTAATATTAGATGAGAGTTATTGTCGCCCCAGTCTTAAGTTGCGTCCAATTTATTGGATATGCAAGGTGGTGATTGACACAGAATATCTGATTCTTCCTAAACAATAATGTTGATATTGTGCAAATTTTCAGACTTATCTATTCTCTTTATGTTAAATCTTGTTTGTTGACGATATGCTCATAAGATATGAGGATGCTTATCCACCTATTCTGTAGAGTTCAATGATGAATTCAGAACATGCACTACCATCTGATCTTATAGCATATCTTATTTGGTTTTTACAGGTTTTGGGTTCCCCACTTTTCTGTATTGTGATTTGGTTTAAAAGTGTTGAAGTTTTTAATCATTGATGCAGTCAATGATGATTTTTTCCCAAATTACTGATTTGACAGTGATTAATATAAAAGATCACCATCTTTCGGCTGAGGTTGCATCAAGAACAAATTTGTTAATTATTCTCAATTATTCTCCTCTGGTGTTCAATCACTTCCTTCAGTTTGTTTACCTTCACATTCTTCTTCTTTTGTTTTTAATCACTTCAGTTTACTTTCACGTTATTTTTTGCCTATGGTATCTAATGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATC</genome_strand>
        <mrna_strand>GTGAGCCCCTT-TTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTG-TTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTT-AGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGGGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579311" ref_strand="+" ref_description="SGN-U579311 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|40287540|gb|AAR83884.1| (e_value=2e-41) ly200 protein [Capsicum annuum]; (*ATH) AT4G18100.1 (e_value=3e-40) | Symbol: None | 60S ribosomal protein L32 (RPL32A), ribosomal protein L32, human, PIR1:R5HU32 | chr4:10035497-10036552 REVERSE | Aliases: F15J5.70, F15J5_70; (*SWP) sp|P49211|RL321_ARATH (e_value=3e-39) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A; ">
      <seq>ggtccagactttactctgttgctgggtgtttcgtttttacgggcagaaactaactttaaagcacgccttgccacacagttgcttctctgtaaataagctttctgttactttaaccctgcttacatgtcttctgttaaaggagattgtattttgtggcatgaaaaatctctgcaatgctaatatatattatttatcagcagcatcttgtagtttattattaaacatcattattaaatttatctacccttgtttgttgtgcttattttgttgtttttttgtgttggaaatggaaagtgatgacagtgattgtcgccccagtcttaagttgcatccaatttattggattcgcaaggtggtgattgactcattgtttctgatccttcctaaacaataatattaaattgtatatttgtgtggttttagctttcttgtttgatgctaagcttgtttattgagttgtgaaaagaacgtgcgatgatgcgtatccacctattctcgagggttcgatgatgaatacaatacatgcactaccatctgatcttatagcatgtctcatcattctttgaggttttggtttccccatttttatctgtattgtgatttggtttaaaggtttaagtgtttagtcactgatgatttttttcataattgctgattgaccagtgattaatacaagaatatcaccatatttctgctgggattgcatctaagacatgctttgtgcagtactattcttcaatttttgtttaaaatcttgttgcctatggtatatcttatgtccagactactttgttgctgggtgtttcgttttatgggcagaaattaaacaaaagaacagatcttgcgacacagttggcttcagtatcaataagctttctgttactgttaaccctgcttacatccctcctatctttcaaccttttctatgtatatttagtagtgttcaacacttcactcgattatatagacatttttgtttgatgtttctctcaacccttgtgaagaatgtgatttgtttcacttgccttggcccaagtcatgtgtgcgaggtttactaagtggaaataattttcatttatcggacaactgacaaactggcgcagaccaaagggtattgactccagagttggaaggaagttcaagggatgtgtcttaatgcccaatattggctatggttctgacaagatgactcgccactatcttcccgatggctttaagatgtttgttgtgcacaatgcaagtgaacttgatattttgttgatgcgcaacatgtgatgcaagggagcaaaatttgtttgcttattccatccttgcttcgcttcgtgacatcaccattagcttattcacaggacttactgtgctgagattgcacataatgtatccacaaggaaaaggaaagaaatagttgagagagtgtcccagcttgatgtcgtagtaactaacaagcttgctaggtcgcgtagccaggaggatgaatgagctttcttggttttaagggttgtcaacagagttcatccataatcaactggcaaatgtgtagcaatgtaattcttgatgtacaattggtatagtaaatgaatataattctcttcacttgcttgtaagaacttctaaatgagaacattatgacgacgctaaaaaatactccacaataccatgagaatgatcattatgaataaacgattgaaaattcttaattattcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="24678" stop="26983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24977" g_stop="26684" g_length="1708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1708" r_length="1708" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U579311" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24977" e_stop="26684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCA</genome_strand>
        <mrna_strand>GGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCACGCCTTGCCACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTATCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGCGATGATGCGTATCCACCTATTCTCGAGGGTTCGATGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCATTTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTAAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTATGGTTCTGACAAGATGACTCGCCACTATCTTCCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTCGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTTTAAGGGTTGTCAACAGAGTTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565295" ref_strand="+" ref_description="SGN-U565295 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|15218953|ref|NP_174245.1| (e_value=2e-57) plasma membrane associated protein -related [Arabidopsis thaliana]; (*ATH) AT1G29520.1 (e_value=1e-59) | Symbol: None | AWPM-19-like membrane family protein, contains Pfam profile: PF05512 AWPM-19-like family | chr1:10323641-10324729 FORWARD | Aliases: F15D2.10, F15D2_10; ">
      <seq>ggggatcacatgcatttgtacaacataatcttcttagcctttacaacacaaaaaaagaaaaaaacttattcagttttcatcaaaaagaggtttcaagccttactatcattatcattttcaagaaccaagaatggctagtgagcagatgaaacctgttgcatctttgcttttggtccttaatttctgcatgtatgttgttgttttaggtattggtggttgggctatgaactttgccattgataatggttttgtcattggtccaggaatgaatcttccagcacatttctcaccaatttacttcccaattggaaatgctgccactggattctttgttgtatttgctttgatagcaggtgtggttggagttgcatctgttctctctggacttaaccacattcgccattggaacatcgatagcttaccatctgctgcttctgctgctacaatagcctggagtcttacagtccttgccatgggctttgcttggaaagaaattgaactcaactacaggaattccaaattgaaaacaatggaggcattcatgataattctatcatttactcaactggtatacatagctgccattcatggtgcttcatcaaggagataaatgagcttcgaagataaatcgtatcgtgtgaaatttattgattgagactgttgtttccttttctttttttgttttaacaattgtgtcattgtatttattcattattgtgtacacaaagttggccagatggctgtttgtatatcaactatcttcagtattcatattgtaagaaacaaataagtgatgtacccttcattggctttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="31912" stop="33756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32208" g_stop="32464" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32684" g_stop="32903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="477" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33037" g_stop="33082" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="523" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33162" g_stop="33456" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="818" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U565295" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32208" e_stop="32464"/>
          <exon e_start="32684" e_stop="32903"/>
          <exon e_start="33037" e_stop="33082"/>
          <exon e_start="33162" e_stop="33456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATCACATGCATTTGTACAACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTGGTAAGCATCTTGTCAAAATCTTTCTTGTTTTTATAACCGTTGTGTCTAGGTCAGTTGGCATGCACCACAACTGTTAGCCTGATCGAACAATAATTTTCACTCACTTCATTGACTAAGTTTGTTGTTGGAGAGAGTTTAGTCTACTAAATGTACTTCCATCTTTTTACTAAGTATTGTCTTTTGTTAAAGACTGATCATGGTGTGTGTGATTTATTACAGGTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGGGTAAGGCCCTGTCTGTTTTCACTTAACGGAAGATCTGAATCTGAATTTATCTCTTGACGCGTTGTGCTATTTATTCTTTTTTAATGTACTCTTCTACATATCAGTATAAGTAATGAAATTGTCATCCATGCAGCTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTGGTATAGCACCCTTCATCTGTATACAAATATGCAAATTTCAAAGAACTATTGACATTAACTCCTGCACAATTTTTTGCAGAAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCC</genome_strand>
        <mrna_strand>GGGGATCACATGCATTTGTACAACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG...........................................................................................................................................................................................................................GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG.....................................................................................................................................CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG...............................................................................AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581789" ref_strand="+" ref_description="SGN-U581789 Tomato 200607#2 [29 ESTs aligned] ">
      <seq>gcttcgtttgattttcatagaaatagaggggacccaatacccatctgttactcactcttctccattggtactaccaaacttcaaaatccccccattccccaatacaccacaaaactaagctaaaacaagaacaagattcttcaatttcagattttgaaacacaaacaaaagatcccatttcttgcaaaacagagcaacagtagttccataaaacccaaaacatgccttcaggtgctaagaagcgaaaagctgctaagaaaaagaagcaggttcaagcagtagaacctccttctcgaagtaccggttcttttcctggtgaggaggatctgaagcgtgatgataaagagagtgacagtgagggtagttcccctgcatctcaagattatcagaatcaccaaaaccagtttactgaaggagaggttgaagatggagagaagcaattggatgattcacgtgatcggtcaattgaagaaaatgaattcaatggggtgaaacatgaaggcaaggaagtggaaattgctggaaatgaagaaggaggtcttgttcaggttgaaagggaattgaaggttgagtgtgaatctgagagccagaagataagtgttgagaatgctgaaatcatgattgaatccaacccaggagggttgcaaaggagttccagtagcagcagcagtagcagctcagtagaaaaatatgatgttgctgataagaatgatgttgtggttgatgatgctccaactgttgaattagcgaaaggtattgaatctttgcctggtaagaatagtattatggttgatgatgctccagttgttgaattagtgaaagagattgaatctttgcttgataagaatagtattgtggttgatgatgatgctccagctgttggattagtgaaagataatgaatctttgcctgatgaacaagttgctgatatccttgtgggaacaatctctgcatgtgatttggataaggctgcaatatcagaagacatagttcaagtcacagcaagtgcttcagatgctgataatgtgattgcatctgctgttgaatcggtggtggaggagaaaggggaagaaaatctgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaataagagcatgaagctggttgaatggagtagcaaacatttggaatcctagaagttgatgactaccttcattctcttgaacagtgtctttgcaaggggtcttgttatagaaacttatatgttcagtacttatagtttagtttgaaaaagcagctgagaacttctcgtctctttgctgctttcctggtattttgcagtggttagtttcttttctcgaatgttctattggtgtgatgtacctgctcctcagggagttggaagcgcctttcttaatgtttttgcacaggacacttggaattgttatttatccaaaatttcaccagcatatagttatatcctttgggttcagacataagcttcaaagctttgttattaatagtcactccttttacttctcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="39232" stop="33533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38932" g_stop="38618" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38132" g_stop="37045" g_length="1088"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="1403" r_length="1088" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1404" r_stop="1499" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34236" g_stop="33832" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1500" r_stop="1904" r_length="405" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U581789" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38932" e_stop="38618"/>
          <exon e_start="38132" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="34236" e_stop="33832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTGGTACCTTACTTCATACTCTGTAATGACTAATTGGGGTTTTACTGTTTTTGGTGTTTTGGGGTTAGAAAAAAAATGAACTTTTTATGTTTTTTAATCAATCTTGGACATACCCATGTGCGTTTTTTCTCCCAAATCTTCAGGGACTTTACAGTTTGTGATCTGTTTTCCAATTTTGATTGGTGGGTCTGGTTTACTTTATCCTGTTGTGTTTTATATTTTTCTCCGTATTGGTATGTTTGTTGATTGAACTTTAGTTAGTTATTGGTGTTTTCTTGTTGTGTGTATTTAGATGATTGTATAGTGTGTTTGTTTCATAAGTGTTTTTGGTGGGAGCATTCATGACCCACCAACCCATGTTACTTCTATTATTGCTTACTTTTTAGTTGTTAAGTTTGATTTGTGGGTCATTAAAGCTGATGGGTATTGTTAACTTGTGACATTCTGCTTTGTTTGGTATTGAATGAATATGGATGGATCTATGGCAGGTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACTATAAACTTCCCATTTTATCTTTAATGTGTTCATTTTTAGCCATACAAATGTTAAGGGAATTATAGACCACAAGATGAAGAGGTCTTTCATTTTTTAACTTTGTGGTCAGTCGAACACCATTACATGAACGTTCATTCTTTAACTTTGTGGCCAGTCAAACACCATTACATGAAATAGGACAGAGGTAGTAGAACTCATGGTATTAGCTGAATAGGCAAGAAAGTATAGGTAAATGTACCCCGTATTTCAGCGGAGCAGTTACATCTTGTTTAATTTAAATGTTTGAACTTATGGGGTGAAATTTAGTTTTGATATGAAGTGTCGTCAAAAAGATTGCATGAAGGAGTACAATGGTGAATCACGCAGTCCTAAAGTTTTTGAAATGCCATACCTTCTACAGATTGTTATAGAAAATTGTTTATGGTTATAAAGCTCATGAGCAAGGATAGATTGATGGATTAGATGTGAGGAAAAACTCATTTTATTAGTCAACTTAATGTAATTCATTAACAACTGGAAGGATCACCAGATTGGAGTAATTTAAGGTATTAGGAAGGACGCACCAAGGACCTTTGTACTTTTCACTTATAGTGATGCTGGTAGCACTTTCAGGTAGGTGTTGGCTAGTTAAATATTCCAGCAATGGTGTGAAAGCTCAAACATGTACTCCTAGTCAAATCAATGGGGTTCAGATTTCATGAGGAACCTAGAACCATCCGAGTGGAGAAAACAGCATTTTGAGGCCTTTATGAAGCAAAATATGCTTTATTACAAAAGGTTATGAACTGCTACTATTAGCTGTGAGACAATGAAGTAATGTGAAGTTACGATATTGTGTTTCTCTTTTTTGCATGGCAAGACAAATAATTAATAATTATGAGAAAAAGACGTCAAGGAATATCACAAACAAATTTTCAGTTACCAGTTACTCTGAGGAAAAGTTTATGTGGTAGCTAACTTAATGAAGCCAACTGTTGAGGCTGATGCATCTCAGATCATGAGAATCAAAAAAGAAATATAGATGTACTAATGACATCCTTCCTGGAAGTACTTTTGTTCTTTGAGCATGATGGTGATGAATTTGATTTAAATAGAAGATATTTCACTGTCTCTCATTGAATTCTTGCATGATTTCCATCCGTCTTGCTGTTGTCAATGATTTATCAGTTAACTGGAGCACCTGCATTTGGATTACTTTAGGGATCTTTATGAGAAACCTCAACATTTGGATTACTTTAGGGATCTTTATTAGAAACCTCGACATTCAAAGTTCTGCAGTATGCTAGACTCTTAACTATATTGTACTGTTTGATATTTCTACTGAATTCACCCTCTTAATTGTTTCTGGCAATTAAATATCTGTACCTATAGCATTGACATTGGTGATCCTCTTAATATTATGATTAAATGTCTTTTTATTAAATGCAGAATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAAG</genome_strand>
        <mrna_strand>GCTTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCGCCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594518" ref_strand="+" ref_description="SGN-U594518 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggaggagaaaggggaagaaaatttgtgtgttgttgatgagaaagatacagcttcagatactgttgtggaaaattggaaggaaaatttgggtgctatagttgacaaagccactatttcagaagttctgatggagacaggatcggagaaaagagatgaaacagctactgcagtgtcatgcaatgccagtgcaatatcaagtggtaatactttagaaagtacagatgcaaaggcttttgcgatcgtagaaaatgaagaaaaaatagaggcaccccacagtgctcctaaaattgatgctagtgtttctgcagatgtgaaagaatctccagctcgagaatgccatggccatcagtttacagcgataccttcacgaccagtgcaaacaacttcctggaaaagttgctgtggcttgtttgagttgtttgcaggatcaaatagatgaatcgagaggcagggaggtcactgagatgtgttttagttggattgctagagtctttgtctgtatcgagacgtgtatgttggaagaaattatagagaacatcttcggctgaaaacctcaagtttttaaacattgaaattcgtttcaaatggagcaaatctgtagtttggaatcgagggattgttttcactgttgtatatcttagtagggtttgatttatattgttgcctctgtcccattttatgattttagtccttatgaaaagaagagcacctttatatactgggaaacatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="37693" stop="35365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37393" g_stop="37045" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36929" g_stop="36834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="445" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36833" i_stop="35954" i_length="880">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35953" g_stop="35665" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="734" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U594518" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37393" e_stop="37045"/>
          <exon e_start="36929" e_stop="36834"/>
          <exon e_start="35953" e_stop="35665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAGGTTATTTATCTTTCTATTATTTCTGTCATTCATATGGGAGAGTGTTCTTAATCACATCTGGCAGCTCATGTTTATGTGGTAAATCTTTTAAATTCCTTTTATTTTGTTTTTGCAGTTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAGGTTAGACATCAGCCTTCTTTATTTTATTTTTTTGTCAACCACATTATGTTTTACCTTTTGTACTTCTGCAAGAAGGACAAAAATGTATAGCTTTCATCAGTTGGACGTGTCTTTTGGTCTTTTTCTGTTTTGTTTTACTTGATATCCTTTATGCTTGACTTTAATCTTGTGTTGCCACAGTTTTTAAGTGTTTTGTTGGTCTGAGAATTGTTTTTTAGCCTTGTTGGATTAACTGTTGTAAGATTAACTGCAAGAAGAAAGCATGATAGCCAAAACTGTATGCAGATTGACAGCCCAGAAAAGTTTATACACAGTAGCTTTGCAATCACTTCCTCTTGAAAATCAAGTGTAGTCCTCTGTTCTTACTGAACTCAATTATTTAACTGTGCAACTGCTCAAAACACATTATGTCAACTTGAATTCCATCTCATTGATGGTGTCCGATTATGCAATCTTGTTGCTTAAGTGACCATCAAATTAAGCTATTTTCTATGAGCATACTGCCCAAATGATTGTTTTCATGCTAAAAAGTATATCAAGATTGATCTGCTATGTTGTCATTTAGGATTGTTTTCTTCAAGCTGCGTTGTCAATGTTTGTGTTTTTGCTTGTTTATGTCGCCTATAATGTATGTGAGACTTGAATTCAATGCTGACTCTATGATTTTGATTTGTTTTTTCCATATGATATACTAGAAATCTAGAATGCAAATGGTTGCACGTATGTTCATACATAATCTAGTTGGGTCAACTAATCAACTAACAAGGATTTTGTGATCTCTTTCATTATTTTTGTCATGTATCCAAGTTCTGGAATGGCCATGTCCTGAGAGATCATCATGTTCTCTTCACATGTTAATCATTTTCTTTTCTTTTTCTAGAGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACT</genome_strand>
        <mrna_strand>GGAGGAGAAAGGGGAAGAAAATTTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG...................................................................................................................TTTACAGCGATACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGGGAAACATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571071" ref_strand="+" ref_description="SGN-U571071 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|186511991|ref|NP_193540.3| (e_value=8e-102) SH3; (*ATH) AT4G18060.1 (e_value=1e-103) | Symbol: None | SH3 domain-containing protein 3 (SH3P3), nearly identical to SH3 domain-containing protein 3 (Arabidopsis thaliana) GI:16974680; contains Pfam profile PF00018: SH3 domain | chr4:10027492-10029866 REVERSE | Aliases: F15J5.30, F15J5_30; ">
      <seq>agtagcagtagcctttgttcagatcagataagaaaatcaaatcccaaaaatcgtgaaatccagcggcaaagattacagccatggatgctttgagaaagcaagctagtaagctcagagaacaagtcgctaaacagcaacaggcagtcatcaagcagtttagtgcaactggttatgaaagttcagatgttatggtcatcgatgaaatggaaatgcaattgcatcatcaactggacaagttgtataagtctacccgggagaaaagggattttcagaaagagattgttaaggcagctgaaacatttacagctataggatacaagcatatagaagcaggaactaaattatcagaagattgctgcaaatatggagtcgaaaatcccaatgacgaggtgttagctaaggctgcttctatttacggcgatgctcgtaaacatgcagagaaggaggttgaagatctaaataaactattcttcagtcaggtactggaaccattgagagctatggtagctggttctcccttagaggatgctcgtcatctagctcagcgctacagtaaaatgaggcaagaggcggagatacaggcaaccgaagtttctagaagacaagctcgagtgagggaagctcccatcccggagaatgtggcaaagctgcacgcagcagaaactaaaatgcaggaactcaaagccaacatgacagtactcggtaaagaagcagcagcagcattagctgctgtagaatcacagcaggagaggcttacatttcagaggcttgttgcaatggttgaagcagaaaagctttatcacgagagagttgctgttattctgggtaatattgaagctgagatagtttctgaaaagcagcgaaaagaggctgctcctcctgtaaccacacttcctgtaacccctcggcccacatacctgaaaaacaaaatactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="48643" stop="59130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48943" g_stop="49082" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49083" i_stop="54839" i_length="5757">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54840" g_stop="54962" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="263" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54963" i_stop="56589" i_length="1627">
            <donor d_prob="0.312" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56590" g_stop="56655" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="329" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56656" i_stop="56993" i_length="338">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56994" g_stop="57143" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="479" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57144" i_stop="58063" i_length="920">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58064" g_stop="58165" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="581" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58166" i_stop="58282" i_length="117">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.885" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58283" g_stop="58480" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="779" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58481" i_stop="58583" i_length="103">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58584" g_stop="58646" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="842" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58647" i_stop="58733" i_length="87">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="58734" g_stop="58830" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="937" r_length="95" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U571071" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48943" e_stop="49082"/>
          <exon e_start="54840" e_stop="54962"/>
          <exon e_start="56590" e_stop="56655"/>
          <exon e_start="56994" e_stop="57143"/>
          <exon e_start="58064" e_stop="58165"/>
          <exon e_start="58283" e_stop="58480"/>
          <exon e_start="58584" e_stop="58646"/>
          <exon e_start="58734" e_stop="58830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGTAGCCTTTGTTCAGATCAGATAAGAAAATCAAATCCCAAAAATCGTGAAATCCAGCGGCAAAGATTACAGCCATGGATGCTTTGAGAAAGCAAGCTAGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAGGTCCACCCAAGAATTCTTTTTTCTTGATCCAATTTTCTTTGTTTGGGGCTGTGAGAAAATGTGATTTTCTTGGAATTCGGGGGTAATGTTTACGCGTTTCTTCTTCTGGGTATTCCTCATCTAGTAGAACTGTAAAATGGGTAGAGTTTCAATTTTGGATTGATCATCTTTTTTATCTTCATTTGGTGGTCCATCTTGGTTTAATGTGCGAATGAATACTTGAATTCTTGACAATCACTGTATAAAAGTGAGGGAAGATTTTAAGCTTTATGAATTTCTATGTTTGTCAGTTTTTTCTTGAATTGGATGTGTTGCCAAAAAAAATGTCTTTTTCAGATTTTATTCTCCCTAATTGTAATTACTTTGGGCTTTGGAATTGGTATGGTAATACAAAAAGGTGCTAGGAGTAGAGGTGGATCCATGATTTGAAGTTTATGCCCTTTGATGTTACTGGGTTCTAAAAGTTATAATTTGTACATAGTAAATGAATAGTTTAAGATAATTACAAGGTTTGATGTAAACCAATTGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACATCCTCCCTCAAACTGATGCTTTGAATACATCCTTCAAGCACAGTTTGGTCATTAAGTGTTCATGTTGTTGCCTGCCAAGACTCTTGGTTAATAGATCTGCCTGCTGTTCCTTAGTAGAAACATAATGGGTTTTGATAACACCTTGTATAATCTTGTCTCTCACAAAATGACAATCAATGTCAATGTGCTTAGTTCTTTCATGAAAAATGGGATTTGCTGCAATCTGAATAGCAGCTTTGCTATCACAATAGAGACATATTGGAACCTTAATACTGATTCCCAGCTCTTTATACAAACCAATCAACCAAGTTATTTCAGCCACAACAGAAGCCATGCTTCTAAACTCTGCTTTAGCAGAGCTTCTAGCTACTGTTTCTTGTTTCTTTGACTTCCAAGACACTATAGCATTGCCAAACTTCACTAAGTATCCCGTGACAGACCTTCTAGTCTGTAAACAACCACCCCAGTCAGAATCACAATATGCTACAAATTTTCCAGAACTATCTGAGGGCATTAGAAGACCAAGACCTGGAGCATTTTTTATATATTTCACTACTCTTAAGGCAGCATTCATGTGAGATTGTTTGGGACTATGCATGAATTGACTAAGCACTTGCACTACATATGCAATGTCAACTCTAGTCATAGTAAGATATAATAACTTTCCTACTAGCCGTTGATATTGAGTAGGATCAACAAGTAATATATCTTCACTTGTAGAACCTGCTTCCTTAGTTATAAAATCATCATAGTCAACTGATGTAAGTTTCAGATTTGTCTCCAAAGGTGTGTTAACTGGTTTAGTGCCACTCAATCCCAACTCACTAATTAGTTCTAATGCATACTTCCTTTGGCTCATCACTATTCCCTTTTGTGATCTCACAAATTCAATTCCAAGGAAGAACTTCAATTCTCCAAGATCTTTCATTTTGAACTTTAGCTTTAAGTCATTCCTTGTTTGTAGAATCAGATCTGTACTGCTTCCTGTCACCAGCAAATCATCCACATAAACCAACACAACTACCAACTCTCCTTGAACTGTCTTGGTGAATAAGGAATAGTCAAAATGACTTTGTGAGAAGCCAAGTTGTATCAATGCATCAGTGAGTTTCTTGTTCCATTGCCTAGGTGCCTGTTTGAGTCCATAGAGAGACTTATGTAATTGAAGACAACATGCTTCCCCTCCTGGCTAGCAAAACCAGAGGGAACCTCCAAATACACTTCCTCCACTAAATCCCCTTGAAGAAAAGCATTATGAACATCCATCTGAAAAATAGACCAATGTTTAGCTGCTGCCACAGCCACAACTGACCTGACAGTGACCATCTTAGCAACTGGAGAGAAGGTCTCAGTGTAATCTAACCCCTCTTGTTGGCTATAACCTTTAGCTACAAGTCGAGCCTTGTACCTTTCCACAGCCCCAGAAGAAGATGTGTATTTAACTTTGAACACCCATTTACACCCAATAGGTTTCTTTCCAGGTGGTAGTTCAACTAAACTCCAAGTGTGATTATCTTGTAATGCTTGAATTTCAGATTGCATAGCAGCCACCCAATTTGGATCTTTAATAGCCTCAGTATAAGAAGTAGGTTCTTTGATGACAGAATAAGATGCCAAAGCAGCTCTACACACAGGTGATAAGTGATCATAACTAACCACATCAGATACTGGATAACAACAATTTGCACTTCCTTTGCTTGTGGAGACATAGTCATGCATCCAAATGGGAGGCTTAGTAGTCCTGGAAGACTTTCTAGTAATAGGAACTGTTGGAGATTGTAGTGTTGGAGTTTCAGAAACAGAAGCATCACCCATTGAAGAACTATCCATAGAAGGAACAGAAGAGGAAGGAGCAGGAGCAGGAATATTGAATGATGGAGCATTATTCTCTATATAGGATGACTGCAGTTCATCTTCCTTCGAGGAAAACAAATGAGAAGGAGAAGTGGAATTTGTCTTGAAAGGAAAAACATCTTCCTGAAATAAGACATCCCTACTTGTCAAAAATACTTTGGACTCCAAATCATACATAGTATAGCCCTTTTTTGACACTGAGTAACCAAGAAATGCTGCAGGAACAGCTCTTGGAGAAAATTTGTCCAACTTTCTTACCTAAGTTACATACCCCAAACAGCCAAATACTTTCATGTGAGCTAGAGAAGGTGAGTGTCTATGAAGTCTCTCAAAAGGAGATTTATCTTGAATGATTGCAGAAGGCAGTCTATTAATGATGTATACAGCAGTGATCACACAATAACCCCAAAATTTCAATGGTACACCAGCCTGAAATCTAATAGCTCTTGCTAAAACTAAAATGTGTCTATGTTTCCTCTCTATCACTCCATTTTGTTGTGGAGTGTAAGAGCAAGAACTTTGATGTACAGTCCCAAAAGACTTTAGCAATCCATTCATTTGTGAGTTAAAGAACTCACACCCATTATCAATCCTAAGACACTTCACCACAGAAGAATAAACAGTCTGAACCATAAGCAGAAATTCCTTAATCACAACAACAACATCAGCTTTAGAAGGTAGTAGAAACAACCAAGTATATCGAGAATAGTCATCAACAAGTGTAAGAAAGTATTTTTTTCCATTATGAGTAGGAACTCTATAAGGACCCCAAACATCACCATGAACTAACTGAAAACAACACTCAGAAGTAGTAGTGCTTAATGGAAAAGACAGTCTAGTTTGTTTTGCTAAAGGACACACATTACAACTCTTGATACATTTGTCCCAATGTGTAGAATTATGACCAAACAGCTTGCTTATAGTGACAGAAGAGGTGTGACCCAACCTCTTGTGCCAAAGATTCATACTCATGCTATAGCTATCAGAATCTGTAGAAGACATTCCAAGTGATGAAGAACAGGCATTAGTAGCTGCAGCAGCAACATTTGCTGTAAATGCTTTCTTATGACCTGATTGAAACACATACAAGCCATTTTCTTCCTTACCAATCCCCTTCACCTTGCCACTTGAGAGATCCTGAAGAATACAAAAATGAGGATAGAATAATACAGCACACTGAAGCTCCTTTGTCAGTTGAGAAACAGACAACAAATTGTATTTGAACTCAGGAATATGCATTACATTGGTTATCTCTTGACCAGGAAAGAGATAGGATGATCCTGTGTGAGTTACATTGACTACATTACCAGTAGGCAAATGAACTTTGCCTAGACCACTCTTGTTTACTGTTGTAGTGTGGGATAACAGCTCAACAGAACTAACCATATGACTAGAAGCACCAGAATCCACTATCCACTTAACATCATCTGAAATGATAGTAGTATGAGGGATCATACCTGCTGTCAAGGCTACATGATCAGCTTCAGATTTTTCTGAATCAAGCATGGTTAAGATATGTTTGTATTGTTGTTCAGTAAATTGAGGAATAGCACCAAATGCATCAGTAGAACCTTTAGACATGTGAGAAGATCCTGCAAAATTGGCAGATTGACCCCCAAACTGATTTCCAATATCACTAGGATTAGGATTGCCCTTACTAGTTTCATTTTCTTTGATATATGATCCTGTTTTCTTCTTGAATTTATAATCTGGAGGATATCCAATTAATTTGTAACACACTGCTTTTGTGTGACCTGTGAGATGACAATGATCACAGTAGAGATCACTCCTTCTGCTTCTGCCCTTGTAAGAGGAATTATTCCCCTGATAGTTAGTGCGTACACTCGAGTTGCTTTTACCACTAAACAAAGCTGTCCCTCAGCAATTTCAGAGCTGTAAGAGGAAGTAGAAGAACCCAGAGATCTTCTACTTTCCTCAGAAATGATCATGGCATATGCCTTATTAATCGATGGAGTCGGAAGCATCATCATGATATGATTTATAGACTGTGAGTAAGACTCATTTAAACCCATCAGAAATTGAAGAAGGCGTTGATACTCAAAGTGTTCCACATATTTCCTAGACTCACAACTACATCCAGGACATGGCATCAATGCATCAAATTCTGCCCATAGTTCTCTTAGTTTTGAGAAATAGGTTGAAACAGAAGAAATTCCTTGGTTAAGAGTAGAAATTTGTGAATGAAGGAAGAAGATTCGAGATCCATTAACCTTGTCAAATCGTTCTTGTAGATCAGTCCACACCTTATATGCACTTGTAGCATATACAATCCCACTAAGTAATTCAGTACATACAGAATTCATAATCCATGAAAGGACTATGGCATTACATTTCTCCCACAAATCATGAAGAGAAGCATCAAATTTCTCCTTAGGATATCGACCATCCACAAATCCTAACTTGCTTTTACCTAATAGACTAATTCGCATTGAACTGCTCCATAATGCATAATTCTCAGGGCCTGTTAGTTTAATCGAAATTAGGGAACTACCTGGTGTATCATTGGGCTGAAGAAACAAAGGACGGTGTTGATCGATTGTTACCAAAGTGGGTACAACTTCAGCTCCAATTTCCAGATCTGCAGGTGAACTAGCATTCACCATTGTTGAGATGTCGAACAGGAGAAAACAGAAACAGTAAAGAAGTGAGATGAAACGTGAACCAGAAACTGAGAAGATCGAAGGAATATGAGATCGATTACTCAAGCTCTGATACCATGTTAAGATCCTTGATCTTCACCATGTGAGGACCTTCAAGATGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGAGAGGAAATATAATGTTTGTGTATTTCCAACTTGTATTCAACAACCTGTACATACTGTATTTATACACTTCATTAACAACTTTTAACAAACTCTAACTACCTTCTAACAATATAACTAACAAGATACAACTAACTAATTAATGGAAAATATCTCTTTATTTAACACCAATATCCTAAGATTGAAACATTTCTATTTAATTGAGTGATTGACTTTTGAGGGATGGTATAAATTGTTTCTTTCCATAGGTAAGTGTTAGTTTTATAGTGTCATTTATTGATTCTTACTTGCTAGAGATATTGATTCTTAAACACAGGCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGGGTAAGGGTTCTGTCACAAAATGTAAATAAAAGCTTGTTCGGTGCCTACAGTTCTTTTTCTTATATTGCAAATGTTTGATGTTGTGTCATTTACTTTCTAACTATGAAATTTACTACAGTAGTATATACCTGACTGCAATTTACTTATTTGCAGAATAACTGCTAATATATTCGTTTAGCATGTAATAGCTACTTAAATATTTAGTCATTATCAAAGACCTTTACTTTGCTCTTCCTGCTTCTTACGAATAGTTGATAATGCAAAAAGGTGAGTCATTTAGCCAAAATGATTTCTTTTAATGGGAGGTAGAGCATTCTTTGGTGTTAGTTAAATCTGACTTATAAAAGGAAGATGCCAAAATTTGAAGCAAGATTGCTATTTTTAAGTGCATTTGAAACTTGGTAATAGTTGTTAATAAGTAATATTGTCATGGAGTTAAGAAAAACTTAGTTGTTTCTTCATTTTCTATTACTTAATAAGTAGTTGGAGTGAGCAGCTTCCATACAATTTTGAAGAGGGATGCAAAGTGGGATGTAAAGATTCTTGAGTTCGAATATAGATAGTTTTGGAGATATTTTTCTTGTAGATGCATGCACGAACATGGATTTGCTGTGTTGAAAGTTTAGAGAACATATTCGTATTCACAACATGTCTAGATCTATTAAATTTAGTTAGAGCATTGGAGAACATTTCATATTGTTCTGTACTACACTGTAAAATATTTACTTACAATCATAGAAATAGATAATAACTACTCAACATGATGTACACTATAAATTGCCATCTCTTTTCTCTTATTTCAAATAGAACCAAAGTCTATTTTCTGGAGACTTAAGTTACTTCTGTCTGAAGTGTGGCCTAGTGGTCAATGCAATGGGTTGAAAACCACGAGGTCTCAAATTACAAAAACCTCTAGGTGATTCTTCCCATCTGTTCTAACCTTGATGGACAGACTTCGTTGTGGGTGGAAGGTGTCCGTATCAGTGCTACATGGTCTGAATATTCTGAACTAAATGGTTGCCTCTGTTGTGATTATTAGCTGGTTTACATTTTTGCCCGTCAAGGCTGAGATTTCACTTACCTGACCTGATCACGATGTTGTTCAGCTCGCCGCATTGATATGCATTCACTTTACTAAATTAGCTTGAGCTTGACCTATTTTAAGATATCCTTAGCAGGCTTGTTTAGTCATTTTCTTCTGCTCCGGCCTCTATAATTTATTGTTGTCTTGTTAAGATGCACTAGATCTTCTTCTTATGAAAGTTGAGCATAATGATATCGAGCTTGGCTTGTTGTATCAGGTTGAGCTATTCAGCTTGGCTTGTCTACATGCATCATTTTTCTAATTCTTCTTCGGATGACTCATATTAAGATACTTTTATATGCACTTGGCTTGTCATTTGTCTCTTGATTTTTTATTGTTGTTGTTGGTGCTAGGCACAAGACCATGTATATCTATGAACAAGATAAATGTCATGCTAGTGTAGAGCATTTCATTCCTATATCTTGTCTTTTGTAGTTATGACTAGGACTTGGCAAATTCATTGCTTAATTTTGATCTAAACTCACACTGTGTGTTTCCTTCTCTTTCTGAAGTTAGGATATCTCTGTTCGTATCATTTTGCAGGATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAAGCAGGTAAAACTTTTGAAGGGTATTTTGTATAAATAGATCTACTTTCAGATGGAACTTTGTTCTAGTCATGATTCACTACCTCTATAATATTCAGGCAGCCCTTTATGTCTGTTTGCTGCTACTTCTAAAATATTTAGGCAGTCCTTTATGCCTTCTTGACGATATAACAAGATTATTCTTAACCTGGATGTTATATTCTTATTTTCTGGATACTGCCAGGCTAGAATCTCGTCCTCCCCTGTCCCATTATTGTGAGACTGAGACATGTTTTTTCTTTTTGCCTTTTTTTTTTTGCTTCTGTGTGTATTTCAACTTATTTGGTGGAAGTTTATGGTAGCCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTTGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAGCATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAGGTAGGTACAATGTGCATGTAATCTGGAGTATGTTAATGAAAACTAATTAGAAGCAATATATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTCTTCCCTAGACCTAAATGTCAGTTGATTACTGGCTATCTTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCTTAATGGAAACTAATTAGAAGCAATAGATATTGGCGTATTTATTTGTTAGAGTTGCATGAGCTAGATAAATGTGTTTTCCCTAGACCTAAACATCAGTAGATTACTGGCTAAATTTGCAGTAGTTTATTACCTGCTAGCCTAAGAGTCTAAGATCGTGACATCCATACATGAATAGGCTTATAGCTGCTTTTTATGGGAAAGACTGCTTATGAATCTGTGAAGATAAAGAAATCAATGATGATAGTCTTAAGTTCTGGTGCTGATAGCAAGTGACAAATGCATAAAGAAATTGATGAAACAGTTTCTCGAAAACCTAAAGGATAATCATTTTCCTTTCCAGTTTTCTCCTTCGACGTGTGTGCCAAGAAAGAGGTCACTTCCATGTGCACATGTTGATCTTGGAAATTTTTTCTTTGGTTTCTGGGTGGTTTTCTGTAAGCACATGCTTCATTTGCAAAATGAAGAAGTAATCACCCTCTTTCCCAACCAAAAAGAAGGATTAATGGCATACTGTAAACATCATGATACCGACCTTTTTGTCCCATGAAACATAATTATGGCAAATATGTCAATACCTTCTTTTTACTTTTCTTTCTGTCTTTTCTTTTCAAGATACTGCACATTTATTTTTTTGATTCATGACACTTAGTAACATTAATCTATGTTCAATACTTCATAGTTCAGCCTTCGGCCGCAGACTAAAATGAGCTTTTGGATTTCCAGGTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGCGGCAAGAGGCGGAGATACAGGTTACTGTAACGATTATTTCTTTTGCTAAAGACTATGATAAACGCCTGTTGATACTTGTCTTATTGTTCAATTATACACTGTCATCACATCCTTAGTATTGAATACAAAATAAGCAGGCAACCGAAGTTTCTAGAAGACAAGCTCGGGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACTCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATGGTATGTATGCTGGTGCATATTTGCCTCTCATGGAATTTAAACTTGTGTTTTGCATGGTCAACCATTTTCATACAATGGTTAAAGTGAGTATAATCATCTGCAGGTTGAAGCAGAAAAGCTTTATCATGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAGGTGAGTGTTTCTCCTTTTGTATTTCTCCAGAGGTATGCTTTACACCTAGGTAATTTTTTCTTACTCGACAATTTACAATTTGTACAGATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTT</genome_strand>
        <mrna_strand>AGTAGCAGTAGCCTTTGTTCAGATCAGATAAGAAAATCAAATCCCAAAAATCGTGAAATCCAGCGGCAAAGATTACAGCCATGGATGCTTTGAGAAAGCAAGCTAGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAA..................................................................................................................................................................................................................................................................................................................................................GCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTCGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAACATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGAGGCAAGAGGCGGAGATACAG.....................................................................................................................GCAACCGAAGTTTCTAGAAGACAAGCTCGAGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACGCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATG.......................................................................................................GTTGAAGCAGAAAAGCTTTATCACGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAG.......................................................................................ATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAACCACACTTCCTG-TAACCCCTCGGCCCACATACCTGA-AAAACAAAATACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577846" ref_strand="+" ref_description="SGN-U577846 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|171191043|gb|ACB45081.1| (e_value=8e-42) putative; (*ATH) AT4G23160.1 (e_value=5e-37) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-27) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ctagggggtcttttaacacgcttgaaacccccacaaggagctgtggaagggtacaaagctcgacttgtggcaaagggttatagccaacaagaggggttagattacactgagatcttctctccagtttctaagatggttactgtcaggtcggttgtggctgtggcaacagctaaacattggtctatttttcagatggatgttcataatgcttttcttcaaggggatttaatggaggaggtgtatttagaggttccttctggttttgccagccaggaggggaaacatgttgtctgcaaattacataagtctctttatggactcaaacaggcgcctaggcaatggaacaagaaactcacagatgcattggtacaacttggcttctcacaaagtcattttgactattctttattcaccaagacagttcaaggaaagctggtaattgtcttagtttatgtggatgattttcaggtaacaggaagcaatacagacttgattctacaaacaaggatgacttaaagctaaagttcaaaatgaaagatcttggagaattgaagttttttctaggaattcaatttgctagatcacaaaagggaatagtgatgagccaaaggaagtatgcattggaactaattattgagttgggattangaggaactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="51570" stop="50347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51256" g_stop="50647" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="660" r_length="610" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U577846" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51256" e_stop="50647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGGCTCGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTC-AATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTAGTGAGTTGGGATTGAGTGGCACTAAAC</genome_strand>
        <mrna_strand>GTACAAAGCTCGACTTGTGGCAAAGGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGATCTTCTCTCCAGTTTCTAAGATGGTTACTGTCAGGTCGGTTGTGGCTGTGGCAACAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAATGGAGGAGGTGTATTTAGAGGTTCCTTCTGGTTTTGCCAGCCAGGAGGGGAAACATGTTGTCTGCAAATTACATAAGTCTCTTTATGGACTCAAACAGGCGCCTAGGCAATGGAACAAGAAACTCACAGATGCATTGGTACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCTTTATTCACCAAGACAGTTCAAGGAAAGCTGGTAATTGTCTTAGTTTATGTGGATGATTTTCAGGTAACAGGAAGCAATACAGACTTGATTCTACAAACAAGG-ATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTTTTTCTAGGAATTCAATTTGCTAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTGGAACTAATTATTGAGTTGGGATTANGAGGAACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571070" ref_strand="+" ref_description="SGN-U571070 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157358985|emb|CAO66887.1| (e_value=1e-27) unnamed; (*ATH) AT4G18060.1 (e_value=3e-27) | Symbol: None | SH3 domain-containing protein 3 (SH3P3), nearly identical to SH3 domain-containing protein 3 (Arabidopsis thaliana) GI:16974680; contains Pfam profile PF00018: SH3 domain | chr4:10027492-10029866 REVERSE | Aliases: F15J5.30, F15J5_30; ">
      <seq>gcctcctgtagccacacttcctgtaaaccctccggcccacatacctgagaaaacaaaatactttttggccaaggctattcattcttttgaagctgaatcagaaaaggagctaagcttgtctgtcggtgattatgttgtggttcgtaaggtgactcaatcaggttggtcagaaggagaatgccaaggcagggcaggttggtttccatctgagtacgtggagaaacgacaaagagtacctacttctaatggagcaacggaagtttactgaaaagatggtgattttttgttgctggtatttgtggaacagttgccagttcatccatttattcatgcaagagcatagagttgagtgtgtaacatattcattttagttcttttagggttattctggacagtaaatgcttttggtctttttcctttcccttttgtttttaccccagcatagacttgtcatcactgatggattatagctgaaatgcacttagttaagtaccctcttcctctacctgcgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="58467" stop="60377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58766" g_stop="58838" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59054" g_stop="59128" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="148" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59711" g_stop="60077" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="515" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U571070" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58766" e_stop="58838"/>
          <exon e_start="59054" e_stop="59128"/>
          <exon e_start="59711" e_stop="60077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAGGTAACCGTCTGCTTTAACAACAGTTGTCTAAGTTGTTATAATCTTATCACAGAATGATTTATTTATTATACTATTTGAAAGAAACTTCTGAGGGAAAGCTGATTGACAATGAGGATATGTTGCTGGTGTGAGCTCTGAAGACACTCTTATCCGTGCAGTGTTACTGTTTATTAATGAGTTGAAGTGGTCTTAGTTTTTGTGTCTCTGTCACACAGGCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAGGTTGTTCTTTAATTCTGGCTCTTCCCTCTTATGATAATAAGTTATTGATTGAAGTTGATAAAACTCACATGTATATCTGCTGGAGCATTCTCCTTTTTCTAATCCTAACAAACCTTTTATGTAAGCCTTCTCAAATTTTCCAGTAAAGATGACTGCTGTTTGTACTACTCACACTAGTCTTCCTTCTAAAGGCTTATTTGATATATGTGCAACTTCCCACTTGAAACCTGCCCCTCTAACTGTCCTTCTCACTTCAAACCTGCCCCTCCTGTCGCCCTTCTCCCATCCGAAAAAGAAAAAAAATAAAGGAAGAATGAAAGTAAACAAAATAAAGAATACTATGTAAATGAAAAAGGAAAGGACACACCTGTAAATTTTCTTGTTCATTGACATTTTTATTCTACTTCTCAAAACTTGTGAAGGTAACAAAACTATGATCTATTCATAGATGTACATGATATGTTCAATGAAACACAGTAAAGTAGAGTTCAAAAGAAGAAACCACAGTTAATTCTTCTATCCTGTTACATCCACGTTTTTTTGAAGAGTGCCTCTCTTTTGCAATTTCATGTTATGTTTCAGGTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTCCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACG</genome_strand>
        <mrna_strand>GCCTCCTGTAGCCACACTTCCTGTAAACCCTCCGGCCCACATACCTGAGAAAACAAAATACTTTTTGGCCAAG.......................................................................................................................................................................................................................GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTGGTTCGTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGTTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTTCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604477" ref_strand="+" ref_description="SGN-U604477 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157360686|emb|CAO70279.1| (e_value=5e-30) unnamed; (*ATH) AT1G17010.1 (e_value=4e-26)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), (Solanum tuberosum)(GI:1039356); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr1:5817565-5819345 FORWARD... ; ">
      <seq>gtactcaatgtggattcctattagtcctcttcctgatgccttcattatcaacattgtgatatcatggagatagtgacaaatggagcctaccgtagcattgagcacagagcagtggttaatagcgaaaaggaaagactctcaattgcaacattttacagcacaaaacttgatggacaaattggtcctgctccgagtatcatttcttctgaaaatccagcaaagtttagaaatattggagctatagattatttcaaaggtttatttgctcgtaaacttgataagaaatcatacttagatgttatgagaattggaggttctcagaatccagcaagttgaaacggacagtattggacctatgtgttctctagtaattgtgacactatgtaccaatctttattcagaagttgtgtttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="80901" stop="79189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80607" g_stop="80538" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80537" i_stop="79836" i_length="702">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79835" g_stop="79489" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="416" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U604477" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80607" e_stop="80538"/>
          <exon e_start="79835" e_stop="79489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGAATGTGGATTCCTATTAGTCCTCTTCCTGATGCCTTCATTATCAACATTGGTGATATCATGGAGGTAATTAAATTGCTATGATCGCCTTTACTATGTTGCTCGGATTATGCAAAAAAATGTTTTTGTACCGTGATGTTCCTTACTTTGAGCTAGCTTTTGGGGTGTGACTTAAGACTAAGACCAAACTTAGCATAGTATCAGAGCAGGACCCATCTCACACAATGTTGGAGCCCCAAAATCAAAATTGTACACGTACCAGATGTTAAGCATTGGACGTGAGGTGGGGTGTTAAAAAATGACAAACGTCCCACATTGATGGTTAATGAGATGAATGAATAAGACTTGAACAATCATCCTCCATTTCAGCTAGCTTTTGGAGTGTGAGTTAGGGCTAAGACCTAATTTAACAATGTTGCTTGAATGTTGTTGTACCCTGATCTTCCGAAAAATGCACTACTATTTGAAGAATGCGAGCAACATATAGTGTGATTATTGTTTTAATATATCTTTTACATGGTTAGTGCCAATATTCAAAATCTTGGTACATCAATCAGTAGGTATGAGAGGATTAATGTCGGATCCTTATGGACAAATGGTTGATTTACCTGTTCGAAGCAATTTAAGTGAAGGACTAGCCATAACAGAATACATCATTTCTTGCTATGGAGCATATAAGATGTTGTTAGTCTACATCTATTTTCATTTTTTGTGTTAACAGATAACTGTTAGGTACTCTATTAAATGAGAAGTATATTCTATTCGCAGATAGTGACAAATGGAGCCTACCGTAGCATTGAGCACAGAGCAGTGGTTAACAGCGAAAAGGAAAGACTCTCAATTGCAACATTTTACAGCACAAAACTTGATGGACAAATTGGTCCTGCTCCGAGTATCATTTCTTCTGAAAATCCAGCAAAGTTCAGAAATATTGGAGCTATAGATTATTTCAAAGGTTTATTTGCTCGTAAACTTGATAAGAAATCATACTTAGATGTTATGAGAATTGGAGGTTCTCAGAATCCAGCAAGTTGAAACGGACAGTATTGGACCTATGTGTTCTCTAGTAATTGTGACACTATGTACCAATCTTTATTCAGAAGTTGTGTTTCATC</genome_strand>
        <mrna_strand>GTACTCAATGTGGATTCCTATTAGTCCTCTTCCTGATGCCTTCATTATCAACATT-GTGATATCATGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTGACAAATGGAGCCTACCGTAGCATTGAGCACAGAGCAGTGGTTAATAGCGAAAAGGAAAGACTCTCAATTGCAACATTTTACAGCACAAAACTTGATGGACAAATTGGTCCTGCTCCGAGTATCATTTCTTCTGAAAATCCAGCAAAGTTTAGAAATATTGGAGCTATAGATTATTTCAAAGGTTTATTTGCTCGTAAACTTGATAAGAAATCATACTTAGATGTTATGAGAATTGGAGGTTCTCAGAATCCAGCAAGTTGAAACGGACAGTATTGGACCTATGTGTTCTCTAGTAATTGTGACACTATGTACCAATCTTTATTCAGAAGTTGTGTTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564460" ref_strand="+" ref_description="SGN-U564460 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157358971|emb|CAO66873.1| (e_value=2e-66) unnamed; (*ATH) AT1G17020.1 (e_value=6e-57)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ... ; (*SWP) sp|P51093|LDOX_VITVI (e_value=3e-27) Leucoanthocyanidin dioxygenase OS=Vitis vinifera; ">
      <seq>attcgtcaatggttatattatggtaaatatggaagaaaataaattggttaagctagggggatctttgccagtaccaagtgttcaacaattgaccaaaagctcaccggaaaatgtcccggcgcgttaccggagagatgatgatcaactacttcttgttcctccgatgatgaaatttgatcattataatatcccaatcatcaacatggaaagcttgcttcgtggcgatgaaatcgaattcaacaagcttgattctgcttgtagagaatggggattttttcaggtgataaatcatggagtgagtggtacactagtagagaaagtgaagaaggatactcaagatttcttcaatctcccactagaagaaaaggaaatgttgaagcaagtagatggtgatatagatggctatggacaagcttttgttgtttctgaggaccaaaaacttgattgggctgatatgtttttcttgacaaccctccctcctcaattcagaaaaaaacatatcttcccccacctccctcaaccattcagaggaacagtggaactatatgcagttgaactgaaaaaactggctttaaagatcattgattttctagcaaaaggattgaacatggataaagaatacataagggaactttttggagaaggatcgcaatcaatgaggatgaantactatccaccatgtccacaaccagacaaagtgattggncttactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="83234" stop="80376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82934" g_stop="82655" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82654" i_stop="81741" i_length="914">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81740" g_stop="81493" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="528" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81492" i_stop="80863" i_length="630">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80862" g_stop="80676" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="715" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U564460" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82934" e_stop="82655"/>
          <exon e_start="81740" e_stop="81493"/>
          <exon e_start="80862" e_stop="80676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGTCAATGGTTATATTATGGTAAATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAGGTTAATTTTTAATTCGAATATAAATAGTAATACTAGTTGGGTTTCTGCTATTAGTGGACCGGTAAATAATAATTCATTATTTTTATTGGAATTTGTGTAGTACTGCGTATTTTCAGTTTGGGGTATCGTAAAATCGTGGCATATTAACTAATTTTTGTATGAACCGATCAAATGATAAAAGTTCTCTTCAATCAAGCTAATTTTCCAAAATCATTAAGAAGAGCAAAGTTGGAATCAGTGTTTTCAAATTATATATTATTCAGATAAATTACCTGAATTTTATAGTAAATATATAATTAATTAATATATAAAAATAAACAGTTTAATAATGATAACATTGACAATTAACAATAAGGAAAAGGGTCACTTGTAGTACTAAATAGCAGTTAAATATGTTTCCCATTACGAGGAGATCAAGTTCACATTTTAATTTCAAAATAGGTTTGAACTATAGTAGATATATGAAATTATTTTGCTATTTTTTTATCGTTACAAAATTGAGATTATTAAATTATGAGAATTTATGATAATCCTGTAATTATATATTTTTAATAAGCTATTATCTAATTTTTAGTTATCATCTTCAATGATGAGAGCTAAAAATTTATATTAGATAAATTTAATGCCTCTTAATAAAGTTGGCTTTAGAGGCCATAAATATTGTTGAGCCACCCCTAGCGTATAACTTTACCATTTAAAATTAATTTGTGTTATAAGATATGATTATGGACAACATCGAATTAATGAAAATTTTATGTTATATATTTTTTTATCCATTTTTCACTAAACCAACTTATAGGGAAAACACATGATGAAAAGCAGAGAAAATTCTTAACTTTTCCATATGAATGTATAACTTTTTTTTTTGTGACTGATTCAATCAAAATATATATATGTGAGTATATTTTTTACAGGTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAGGTATTATTACGATCCCGATTAATTCAGATTCTCATTACGTAGACCTCATTTGAAGGTATTATCCCAAGGTTTAACCTCGAGACCACATATGTTTAAAGGTAGAGGGATCTCATCCATTCAATTGTAACCTTTAGTGGTCCTGTAATTTTGGCTTATTTGTTTTGTTATAGTTTGCCTTGACATAATAGTTAATGAATATGTCTTGTTATTGCTAACAATGTTCATTCTTTTTAAAAGGGAAAAGAGCCAAATATGCCCTAAACTATTTGAAAAAGTCTAGATATATCATTCGTTTAAAGTTTGGCTCACTCATACTCTTACCATCCAACTTTTGTCCCAAATATGTCCTTATGGGTGTTACTGGGTATGCTGGACATATCCAGCTCATTTTTTATTTCTTTAAATGTCACGTGAAATTATAATGTCATTTTGACCAGCATACCAACTAACGCGCATATTTGGGCCAAAAGTTAGACGGCAAGGGCAGGAGTCAGCCAAACTTTAAACGAAGTATATTTAGACCTTTTCGACTAGTTTAGGAATATATACTCAAACATGAGTGCCAGTTATTTTACTATATTGTCAGTATACATAAGTTAAATCCTGAGTTTTTTTGTTGTATTGAAACAGAGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCTAGCAAAAGGATTGAACATGGATAAAGAATACATAAGGGAACTTTTTGGAGAAGGATCGCAATCAATGAGGATGAATTACTATCCACCATGTCCACAACCAGACAAAGTGATTGGACTTACTCCT</genome_strand>
        <mrna_strand>ATTCGTCAATGGTTATATTATGGTAAATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCTAGCAAAAGGATTGAACATGGATAAAGAATACATAAGGGAACTTTTTGGAGAAGGATCGCAATCAATGAGGATGAANTACTATCCACCATGTCCACAACCAGACAAAGTGATTGGNCTTACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564459" ref_strand="+" ref_description="SGN-U564459 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157344723|emb|CAO70478.1| (e_value=2e-115) unnamed; (*ATH) AT1G17020.1 (e_value=3e-103)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ... ; (*SWP) sp|Q9M547|FLS_EUSGR (e_value=7e-51) Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS; ">
      <seq>gtagaattaagcagttaaacaaatatgagagacatagaagtcaagtacatggaagttccttctgtacaggaactggccaagaagaaactcgtgtcgattccatcgcgatacgtacgcgatgatcaagaccgttcaattgcatcatcaatttataaagaagtcccagtaattgatatgcaacgattgatcaactttaatgatcatgactccatgaatcttgagcttaacaagttgcacttagcagctaaagattggggtttctttcagttgattaatcatggagttagttgttcagtagtggagaagatgaaagacgagactcaaaaattcttcgatctgccattagaagagaagaaaaagtttgaaaaatcttcaggagatacagatggatttggacagctattcgtcgtctctgatgaacaaaagcttgactgggctgatctcttttacttgaagacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttagagagacgattgaagagtacgcggatgaaataaagaagctaagcatgagagtattggaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcaaagaaggaatgcaatcgatgaggatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctcattcagatgcaacaggccttacaatacttcttcaagttaatgaaactcaaggtcttcaaattaaaaaagatggaatttggatccccattgaaccactccctaatgccttcatagtcaatgttggagatgcttttgagattttctcaaatggaatatacaaaagcatagaacatagatcagtggtgagctcagaaaaagaaaggatttcagtagcaacatttcagagtccaagattggatggtatattaggtccatcaagtagccttgttacacctcaaaatccaccaaaattcaaaaaaattggagtcactcaattttataaaggatttttcacacgtgaacttgatgggaaatcatatgtggacaccatgagaatcaccaatgtagatgatctaaacaattagttagatatctcgatttgagtatatatctgaatttttataatgctgtaagatgttatattaagatgtcaagattaaaaatttatgactctttatatttttgaatgtgtaaaaaaattatatgatgattttggatgtctattgtattaagatttcaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="99457" stop="93953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99158" g_stop="98892" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97001" g_stop="96757" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="512" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81">
            <donor d_prob="0.717" d_score="1.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96675" g_stop="96351" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="837" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94676" g_stop="94252" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1262" r_length="425" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U564459" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99158" e_stop="98892"/>
          <exon e_start="97001" e_stop="96757"/>
          <exon e_start="96675" e_stop="96351"/>
          <exon e_start="94676" e_stop="94252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAGGTACATATAGATCAATAATATACTAGCAAAGATATATCAAGTGACTTTTCTCATACAAAATATCAATTAAAAGAGCATATGTATTCTTTAGTTTAAGCTTTCTAAATAAAATTATCACATACTTTAATATGATATCAGTTTTTAAGATTGTTTGGTTCAAAACGGTAAAGCCCATTGGCCTTGAAGTAGTCCGTGGTTCAGCCAAAACGGACCATATATAGGTTGTATTTGCATATTTTTACTTTGTCTCGACTTTTATGATACAATTTTTTTCAGTGTCAAAAACACCTAAATCAATCTTTTCTTAGTTCTATACCTAAATTATTGAGAATATGAGTCTCACATTTAAGTTATTACTTAGTAGTTTGAGAAACACATTTTTCTCTTTTATTACACTCTTATATCATGGTGTATGTACGTCTACACCTACTCCTTTAACTTTACCTCATGTTATATTTATGTCCTTTTAACTTTGAGTGTGCATAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAGACACATACACCCTATGTGGCATCTTACATGGTAATTTACGTTCTACATGGTGTCTTGTGTGTATTGTACCATGTAAGATTAATGTGTCAATCTGTTCAACTTTATACAAGTTTAAGTGTCTATTTTTGCACAGCCCAAAGTTGGATCGTATACATGTTAAATGATGCCAAGTTAAAGGGCATATACATGTATTATGCCATAAAAATCATGGACAAAACATTCTATCTTGGCAAAAATTAAATAGATTATTAATATCAATTAAAATAATAGACAAAATTATATTTCACCTTAACAAAAAAATTTAATAAATTATAGTATTAGTTAAAGTTAAAAGTAAAGGCATTACTATATATCCAAAAAATTTATAAAATAAAGTATAAAATATTTTTCTTACTTTTACTCCAGACTCCACCACTTCCTCTCACCCCACCCCCTCCCCACCACAATTTTTTAGTTTTTTTAAAAGAAAAATAAAATTCCATTTGTAAAAGTCTTTTTGAAAATATCTTACTTCCTCTCCCCCTAACTCTCCAAATAATAATTTAGATATTATTTTATTTTTTTAAAAAAAAATTCTACCTCACTCCACCTAACACAATACTTTCAATTATTTCCTCATATTGTGTTATATATAATATTTTTCTAAAAATATATGTACATATCTAGCACAAAACTAAAAAAATATATCTAAAAAAGAAAAAAGAGAGTAGACGGTGTATGGTAGAATTTCTTTTTTAATAAAAAAATAAAAATAATATCAATCTTTTTTAGGAAGAAGTGAGGAAGGGGGTGAAGTTTGGAATTTTTTTAAAAAAAATTAAAAGAATAAAAGGGTGGGGTAAGAAAAAAATTCTAGATTTTATCTTTTTTTTTAAAAAAATTCTTCTGGGATAGTAATACTTTAATGTTTATCTTTCAATTAATATTAATGATTTACTTAAAAAAAAATTAAGACATATTTTATTTATGTGGCGAAGTTTTGCTGGTAAAACAGAAGGTAGGCATACTATATAAATGTGCTCTTTAACTTGGATTTATTTTACATGTATGTCCCTCCAAGTTTGGATATGTATAACTTAAACTTGTATAAAGTTGAACAAGTAAATATATAAGTCCTACATGAAACAATACACGTAGGATACCATGTAGAACAAAAATGACATGTAGGATGTCATGTTAGACCTACATGTCTATTTGTTCAATTTTATACTAATTTGAGCGTCTACTTTTATATATCCAAAGTTAAAGAATATAAATGTGATTTAAAACTAAGTTAAAATACATATATGCATAAAGTGTATTACACTCCCAATAGTTTAAACTCCATGCGCAATAGATAGTAATAACAAGTTCAACTACATGCTGCAGTTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAGGTACTTCCTTCATCCTCTTCTCTCAATATTTATTGAGTAGTATGGTATTATTTTTACCGTAGTTTTAATTTATGTGGTGATATTTGACTACGATCTTTTGTCAAAGGGGAGATATAACAAGTAACAAAATGAAGAGAAAAAACATCTCATGACTAGCTAGTTGAATATTCCCATAAATTTCCTTGGTATTAGTGTTTCAGTAGTCCATACTTATTTAGGAGTCTGCATTAGCTATATCAATCGTACAATTTATTTAGGGAAAATGTAGAAGTACTTTTTTATCCTATGTTTGAAATCTAAAAGATATAATTATACTATACTAAGGTCATATTACTTTCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTCCGACTTATGTGACACTAGCTTGAAAAAAAAAATCAATTAGCGTTCATTGATTAAACCCGAAATTCAATCCGACTTTGACATAGAACCTAACTCCCGAGACCTGGTTTCAACTCTGACCTTGACTTAGGGACTAGAGTTGTAAGATTCGAATCCTGGCCTATAGAAAAAATCAAACAAAATCTTAGAGATAAGCAATAACTAGGCTAATATTGAGTTAAATTGAAGATCACTTTCAAAATGAGTTATTAGGGGCGTATAAAATTGAATCAAATCGTAAAAGGAGTCAAATCAGAAAAAAAATTGATTAGTAATTTGGTTTGACTTGATTTGGTGTTGGACAAAAAAAATCTGATTATATTTGAGTTGGTTTAGTTTCAACTTGAAAAAATCAAACTGAGATCAAATCAACCCGACATTTTATATATATTTTTAAAATTTTATTATACATAAAAATACTTACTTTGATATAATTTTTAAATATCTCTTATACTTTTTCATAGTTTTTATCTTTTAATGTATTTATTTCATGTTTGAAAGTTAGAATTTTTAATGATCCAATAAAAATTATAGTTCATACATGTTGGTAATTATAATAAAGTTTAAATAATTGATACTAATGCAAAAAAAAAATCAACTCAACACTAAGAATGACATAATATTGAATTATTTATTTTTTTAGTTTTACATAGGTTTAGACAATTAAAATGCATCTAATTTTATTTTCTTTTAGTATTTAATCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTAATTTTAAATTCTGATCAATTTCTATGACTTATTAATTTGCAATATAGTTTAACGCGATTTTATTATTATTTTTTTGTTAGATATTTTAGTGTCATTAATCATATCATATTTTGTGTTGTTTTCTTAAGAAATAACTTAGATAGTTACATTTTGATAGGACTAAAGAAATACTTGAAGTACAAGTAAAGTATATGGTTGTATGAACACTTCATCGAAAAAACCCGAAATTGAAAAACTCAAATTTTATTTGTTTAGTTTATAAATTCAAAAATCAAACAGAAGTAATTTAATTTGATATTGGAAAAGTCTGAATCAACCCGATCATATACATTCCTATGAATTATAATAAATCGATCTAAAATTAGCCCAATATAAAACTATCTTCTGCTCAATCCTTAAAACTCTTGGCGAGCCATCGTTTTTGTAGGCCATATTTGACAGCCTTACTCGTAGCCCCACTCTTATCTTCTTTTTTATTATATATGTACTATAAATGTTTTTTTTTTTTTTTTGGATCAGATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGACTAAAAATTTATGACTCTTTATATTTTTGAATATGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATAC</genome_strand>
        <mrna_strand>GTAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG.................................................................................AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGTAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTTTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGATTAAAAATTTATGACTCTTTATATTTTTGAATGTGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564458" ref_strand="+" ref_description="SGN-U564458 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157344723|emb|CAO70478.1| (e_value=2e-101) unnamed; (*ATH) AT1G17020.1 (e_value=6e-90)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ... ; (*SWP) sp|Q9M547|FLS_EUSGR (e_value=2e-45) Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS; ">
      <seq>gaccatagaattaagcagttaaacaaatatgagagacatagaagtcaagtacatggaagttccttctgtacaggaactggccaagaagaaactcgtgtcgattccatcgcgatacgtacgcgatgatcaagaccgttcaattgcatcatcaatttataaagaagtcccagtaattgatatgcaacgattgatcaactttaatgatcatgactccatgaatcttgagcttaacaagttgcacttagcagctaaagattggggtttctttcagttgattaatcatggagttagttgttcagtagtggagaagatgaaagacgagactcaaaaattcttcgatctgccattagaagagaagaaaaagtttgaaaaatcttcaggagatacagatggatttggacagctattcgtcgtctctgatgaacaaaagcttgactgggctgatctcttttacttgaagacttcacccacatatttgcgaaagcctgtgttttccaagctttacctttcacttaggtacataccaaacgttgtttgcgccctttttaacgcttgaaaataagtaagagaatcgcttattaatgcgtataaatgtagagagacgattgaagagtacgcggatgaaataaagaagctaagcatgagagtattggaaacgttgggtaaagctttggggattgatgaagatgaagtgaagagtgttttcaaagaaggaatgcaatcgatgaggatgaattactatccaccatgtccacaaccagagaaagtgatgggacttactcctcattcagatgcaacaggccttacaatacttcttcaagttaatgaaactcaaggtcttcaaattaaaaaagatggaatttggatccccattgaaccactccctaatgccttcatagtcaatgttggagatgcttttgagattttctcaaatggaatatacaaaagcatagaacatagatcagtggtgagctcagaaaaagaaaggatttcagtagcaacatttcagagtccaagattggatggtatattaggtccatcaagtagccttgttacacctcaaaatccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="99461" stop="94228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99162" g_stop="98892" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97001" g_stop="96351" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="922" r_length="651" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94676" g_stop="94528" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1071" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U564458" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1071</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99162" e_stop="98892"/>
          <exon e_start="97001" e_stop="96351"/>
          <exon e_start="94676" e_stop="94528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAGGTACATATAGATCAATAATATACTAGCAAAGATATATCAAGTGACTTTTCTCATACAAAATATCAATTAAAAGAGCATATGTATTCTTTAGTTTAAGCTTTCTAAATAAAATTATCACATACTTTAATATGATATCAGTTTTTAAGATTGTTTGGTTCAAAACGGTAAAGCCCATTGGCCTTGAAGTAGTCCGTGGTTCAGCCAAAACGGACCATATATAGGTTGTATTTGCATATTTTTACTTTGTCTCGACTTTTATGATACAATTTTTTTCAGTGTCAAAAACACCTAAATCAATCTTTTCTTAGTTCTATACCTAAATTATTGAGAATATGAGTCTCACATTTAAGTTATTACTTAGTAGTTTGAGAAACACATTTTTCTCTTTTATTACACTCTTATATCATGGTGTATGTACGTCTACACCTACTCCTTTAACTTTACCTCATGTTATATTTATGTCCTTTTAACTTTGAGTGTGCATAAGTAGACACTTAAACTCGTATAAAATTGAACAAATAGACACATACACCCTATGTGGCATCTTACATGGTAATTTACGTTCTACATGGTGTCTTGTGTGTATTGTACCATGTAAGATTAATGTGTCAATCTGTTCAACTTTATACAAGTTTAAGTGTCTATTTTTGCACAGCCCAAAGTTGGATCGTATACATGTTAAATGATGCCAAGTTAAAGGGCATATACATGTATTATGCCATAAAAATCATGGACAAAACATTCTATCTTGGCAAAAATTAAATAGATTATTAATATCAATTAAAATAATAGACAAAATTATATTTCACCTTAACAAAAAAATTTAATAAATTATAGTATTAGTTAAAGTTAAAAGTAAAGGCATTACTATATATCCAAAAAATTTATAAAATAAAGTATAAAATATTTTTCTTACTTTTACTCCAGACTCCACCACTTCCTCTCACCCCACCCCCTCCCCACCACAATTTTTTAGTTTTTTTAAAAGAAAAATAAAATTCCATTTGTAAAAGTCTTTTTGAAAATATCTTACTTCCTCTCCCCCTAACTCTCCAAATAATAATTTAGATATTATTTTATTTTTTTAAAAAAAAATTCTACCTCACTCCACCTAACACAATACTTTCAATTATTTCCTCATATTGTGTTATATATAATATTTTTCTAAAAATATATGTACATATCTAGCACAAAACTAAAAAAATATATCTAAAAAAGAAAAAAGAGAGTAGACGGTGTATGGTAGAATTTCTTTTTTAATAAAAAAATAAAAATAATATCAATCTTTTTTAGGAAGAAGTGAGGAAGGGGGTGAAGTTTGGAATTTTTTTAAAAAAAATTAAAAGAATAAAAGGGTGGGGTAAGAAAAAAATTCTAGATTTTATCTTTTTTTTTAAAAAAATTCTTCTGGGATAGTAATACTTTAATGTTTATCTTTCAATTAATATTAATGATTTACTTAAAAAAAAATTAAGACATATTTTATTTATGTGGCGAAGTTTTGCTGGTAAAACAGAAGGTAGGCATACTATATAAATGTGCTCTTTAACTTGGATTTATTTTACATGTATGTCCCTCCAAGTTTGGATATGTATAACTTAAACTTGTATAAAGTTGAACAAGTAAATATATAAGTCCTACATGAAACAATACACGTAGGATACCATGTAGAACAAAAATGACATGTAGGATGTCATGTTAGACCTACATGTCTATTTGTTCAATTTTATACTAATTTGAGCGTCTACTTTTATATATCCAAAGTTAAAGAATATAAATGTGATTTAAAACTAAGTTAAAATACATATATGCATAAAGTGTATTACACTCCCAATAGTTTAAACTCCATGCGCAATAGATAGTAATAACAAGTTCAACTACATGCTGCAGTTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAGGTACTTCCTTCATCCTCTTCTCTCAATATTTATTGAGTAGTATGGTATTATTTTTACCGTAGTTTTAATTTATGTGGTGATATTTGACTACGATCTTTTGTCAAAGGGGAGATATAACAAGTAACAAAATGAAGAGAAAAAACATCTCATGACTAGCTAGTTGAATATTCCCATAAATTTCCTTGGTATTAGTGTTTCAGTAGTCCATACTTATTTAGGAGTCTGCATTAGCTATATCAATCGTACAATTTATTTAGGGAAAATGTAGAAGTACTTTTTTATCCTATGTTTGAAATCTAAAAGATATAATTATACTATACTAAGGTCATATTACTTTCTAAACTTATTTTATAAGTAATTTTCTACCCCTTTCCGACTTATGTGACACTAGCTTGAAAAAAAAAATCAATTAGCGTTCATTGATTAAACCCGAAATTCAATCCGACTTTGACATAGAACCTAACTCCCGAGACCTGGTTTCAACTCTGACCTTGACTTAGGGACTAGAGTTGTAAGATTCGAATCCTGGCCTATAGAAAAAATCAAACAAAATCTTAGAGATAAGCAATAACTAGGCTAATATTGAGTTAAATTGAAGATCACTTTCAAAATGAGTTATTAGGGGCGTATAAAATTGAATCAAATCGTAAAAGGAGTCAAATCAGAAAAAAAATTGATTAGTAATTTGGTTTGACTTGATTTGGTGTTGGACAAAAAAAATCTGATTATATTTGAGTTGGTTTAGTTTCAACTTGAAAAAATCAAACTGAGATCAAATCAACCCGACATTTTATATATATTTTTAAAATTTTATTATACATAAAAATACTTACTTTGATATAATTTTTAAATATCTCTTATACTTTTTCATAGTTTTTATCTTTTAATGTATTTATTTCATGTTTGAAAGTTAGAATTTTTAATGATCCAATAAAAATTATAGTTCATACATGTTGGTAATTATAATAAAGTTTAAATAATTGATACTAATGCAAAAAAAAAATCAACTCAACACTAAGAATGACATAATATTGAATTATTTATTTTTTTAGTTTTACATAGGTTTAGACAATTAAAATGCATCTAATTTTATTTTCTTTTAGTATTTAATCATGTAACTAATACTTATTAAACTTATTTTAGCATGATTTAGTAATTTTAAATTCTGATCAATTTCTATGACTTATTAATTTGCAATATAGTTTAACGCGATTTTATTATTATTTTTTTGTTAGATATTTTAGTGTCATTAATCATATCATATTTTGTGTTGTTTTCTTAAGAAATAACTTAGATAGTTACATTTTGATAGGACTAAAGAAATACTTGAAGTACAAGTAAAGTATATGGTTGTATGAACACTTCATCGAAAAAACCCGAAATTGAAAAACTCAAATTTTATTTGTTTAGTTTATAAATTCAAAAATCAAACAGAAGTAATTTAATTTGATATTGGAAAAGTCTGAATCAACCCGATCATATACATTCCTATGAATTATAATAAATCGATCTAAAATTAGCCCAATATAAAACTATCTTCTGCTCAATCCTTAAAACTCTTGGCGAGCCATCGTTTTTGTAGGCCATATTTGACAGCCTTACTCGTAGCCCCACTCTTATCTTCTTTTTTATTATATATGTACTATAAATGTTTTTTTTTTTTTTTTGGATCAGATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACC</genome_strand>
        <mrna_strand>GACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586249" ref_strand="+" ref_description="SGN-U586249 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|157360686|emb|CAO70279.1| (e_value=2e-125) unnamed; (*ATH) AT1G17020.1 (e_value=1e-102)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ... ; (*SWP) sp|Q9ZWQ9|FLS_CITUN (e_value=3e-48) Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS; ">
      <seq>ggcaaagtaaaataaaattttatcgaccacacacaataatctttcaatcctagataacgattttgctagaaaaaaaaaatacatgttgatgatggaagaagcgaggtcgagaaagctaggtggctctttgaaagttcctaacgttcaggagctggcaaaacaacaactagcaggtgttccatcgcgatatattcgtgttaatgatgacgaaaatcaattgtataattcttccatattattgcctcgtgaattagctccagttattgacatgaaaaaactgctcaaaataattaaagacgatgatacagagcttaacaggtttcatcttgcttgcaaagaatggggatttttccagttggtgaatcacggagtgagttcatcattgatggagaaagtgaagtcagaaatcagagcatttttcgatctaccaatggaagagaagacgaaattcgagcaagaggaaggagatatcgaaggatacggacaagcatttgttgtatctgaagaacaaaagttagactggggtgacatgctttacatgatcactcttcctactcatttgcgaaaacctcacttgtttccgaagcttcctgcctcactcagggatgcattggaacaatactcaacagcactgaaggaacttgctatgaaaattctgtacgtaatggcaagagctttagggatgagaacagaggatatgaatgtattatttgaacaagacgggacacaaatgatgagaataaattattatcctccttgtcctcaaccagagcgtgtaatggggttatgccctcatacggatgctattggtctagctatattacttcaggttaatgaaactgagggtcttcaaattaagaaagatggagcttggattccggttccatatcttcctgatgcctttgttgtcaacattggagacattttagagattgtgacaaatggaatttacaagagcattgaacatcgagccatcgttaatgaggataaggagaggatctctattgctacatttttaagccccaaattggacggagatttaggtccagcaccaagtctcctcactcctcgatcccctgcaaaatataggaggattggagtggccgattacttcaaaggatttttttctcgagagctccatggaaaatcatacctacatactctaaaaattggaaatggagatcatcggagcaattgatcaatgttgcattttattccgctcgtataataattattgtagcaatggtggtctgtttagttgtattagctatctcatgtcatgtaaaaggttgcagaagaacagttattgcttatatttatattcaaaaccattaagaaatgcataaatttccaatccctatatttgaattgggtaaaggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="-" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="114781" stop="60166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114481" g_stop="114127" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114031" g_stop="113784" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="603" r_length="248" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113726" g_stop="113386" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="945" r_length="342" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113323" g_stop="112897" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1385" r_length="440" r_score="0.878"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112896" i_stop="112730" i_length="167">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.552" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112729" g_stop="112721" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1386" r_stop="1394" r_length="9" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112720" i_stop="111995" i_length="726">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.760" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111994" g_stop="111966" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1395" r_stop="1423" r_length="29" r_score="0.655"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="-" ref_id="SGN-U586249" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>1409</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114481" e_stop="114127"/>
          <exon e_start="114031" e_stop="113784"/>
          <exon e_start="113726" e_stop="113386"/>
          <exon e_start="113323" e_stop="112897"/>
          <exon e_start="112729" e_stop="112721"/>
          <exon e_start="111994" e_stop="111966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAA-GGGGATTTTTCCAGGTTACGTTTCATAGATCAAACACTCTTCATTATGCTCCATAACTACTTTTTCTCAGTTAGTTTAGCAAAAATATATGTCTAATTAAATTGCGCAGTTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAGGTACGATAATATATAACTGAGTTTACGATTAAATATTTAAATTCTTGGACCGTTAAGGGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAG-GTGAGATATATGTGTGTTTAGTATGATACAAGTCAATTTGTGGGTAAAGCTCTGTTAATTTTGTTTTTTTTGCAGATTGTGACAAATGGAATTTACA-AGAG-CATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCA-----C--T--CCT-CAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTTAAAACCATTAAGAAATGCATAAACTTCCAAT-CCTATATTTGAATTGGG-AAAGGGTAAAAATATGTTGCTGAATTATTGAGAACAGAGCAATTATGCTCTATTATCTGCTCTTTGACACAAAAAATGCCATAGCCATCAAGGTCCGCCACCCTTTGGATACTGATTTGACAGAACTCAATAACTTTATCTCAAATTTTATATTTGTGTTAAAAAATTCATTTGATAGGTAAAAACAGTATTCTTAACCATGTAAACACAAACGAATTATGAAAATTGTAATTAACAGTATCACCTCATATTCAAAATTAAAAAAAAATCGTTTTAATTTATTTTTGTTTAATTCGAAATGTTAATTAGTTGGGTCTTTAATTAATTAGGGATGGTAAAATTGATCTAGGCCTGCCCAACTCTAGTGGCCAATCTAATTCCTAGAATTTGTACTTGAAGTTAAGTAATATTTGAGATTTGACCTCTAATTTTGTGTTCACTAAATTAAAGTCACTCTATTAGACACTAACCAAAAAAAATTTAGGAAAAACTACAAAATATGATAAATACTAATATACATTTAAAATAAATATCTACAATCCATTTCTTTTTTTATGTTATATGGATATAATTACACAATAAATAGAAAAGTTAATTATATATAAAAATAATTAGAAAAGTAATTGATATTAAATAGGAAAGTTATTGTTACACACCTAATTTATTATCTCTAAGCATGTTGTGTGTGATTGGTTCCCGTGTTTACCCTCACTAATACTTTCTCTTTCATCAAATTTCTTTCAATTTAAGATCTTTTTGATGATTTTAGGAACAATTTTGTAATTTGAATTCATCATATATTACTTGATTGATTTTCTCCTCGTCTTTGTGTAGATCATAGTTTTATACATATATGTTGCATCTATTTTTATAGGCTTTCAATTGACTTGTTTCTGTATTACAATGACTATAGTAATAAAAAAAAGTAGTACAAGAAGAACA</genome_strand>
        <mrna_strand>GGCAAAGTAAAATAAAATTTTATCGACCACACACAATAATCTTTCAATCCTAGATAACGATTTTGCT-AGAAAAAAAAAATACATGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTCCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCATCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCTTCCATATTATTGCCTCGTGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGATGATACAGAGCTTAACAGGTTTCATCTTGCTTGCAAAGAATGGGGATTTTTCCAG...............................................................................................TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAGTCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAGGAAGGAGATATCGAAGGATACGGACAAGCATTTGTTGTATCTGAAGAACAAAAGTTAGACTGGGGTGACATGCTTTACATGATCACTCTTCCTACTCATTTGCGAAAACCTCACTTGTTTCCGAAGCTTCCTGCCTCACTCAG.........................................................GGATGCATTGGAACAATACTCAACAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCAAGAGCTTTAGGGATGAGAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGTGTAATGGGGTTATGCCCTCATACGGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACTGAGGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGACATTTTAGAGATTGTGACAAATGG..............................................................AAT-TTACAAGAGCATTGAACATCGAGCCATCGTTAATGAGGATAAGGAGAGGATCTCTATTGCTACATTTTTAAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCACTCCTCGATCCCCTGCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATCGGAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATAATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATTAGCTATCTCATGTCATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTCAAAACCATTAAGAAATGCATAAATTTCCAATCCCTATATTTGAATTGGGTAAAGGGGAAAA.......................................................................................................................................................................AAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565166" ref_strand="+" ref_description="SGN-U565166 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157360684|emb|CAO70277.1| (e_value=2e-67) unnamed; (*ATH) AT1G17020.1 (e_value=2e-57)  Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to flavonol synthase (Petunia x hybrida)(GI:311658), leucoanthocyanidin dioxygenase (Malus domestica)(SP:P51091); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | ... ; (*SWP) sp|Q0JH50|GAOX2_ORYSJ (e_value=2e-23) Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2; ">
      <seq>ggtccgatgaggctgtgtgcaggtcctaattcggattcaaggttcatgtaatagaatgtcgcaacagagagcctctcttcatttgagtttacaattgctctgtgctcaatactcctatacacaccattgctcaatatctgccaagtcaaatgtatcacatttacgcgcataatattttcagcagtagtagaacatttttacctccatcatgtctccaatattcacaatcaaagcatttgggaggggctttatgggcacccaaatatcatcttttcggacttggagaccttcagtttcgttcagctggaaaaggatggtgaggacaccaggatcagaatgagtgcttaagccaattaccctgtttggttcaaggcaaggcggataataattcatcctcattgactgcataccatcactgaatagatctctcgtttcctcttcgtccatccttaaagcctttgacaattgacatacaataatcattgctaggctcttaattcctttgcagtatgcttccaagacgtccctacatttcaaaacatattaattaaaagatgaggagagcaggacatagttataaggagataggcacctgagattcgagggcaatttctgaaacaagtcaactttgcggatataaggaggaagagtcattatgccaaacatatcactccaatcaagcttctgctcctccgatacaacgaatgcattcccaaaaccttcaaagctgtcttcctgttgcccatagttcttcttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0072A04-Nv8Bc/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0072A04.2" temp_strand="+" temp_description="C02HBa0072A04.2  AC215375.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0072A04 sequenced_by:kribb upload_account_name:korea">
        <position start="116110" stop="117478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116410" g_stop="117179" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0072A04.2" gen_strand="+" ref_id="SGN-U565166" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0072A04.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116410" e_stop="117179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTTTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTTAAATATATCACATTTACGCGCATAATATTTTCAGGCGGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGTAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTGCCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCATTTCCTCTTCGTCCATCCTTAAAGCCTTTGTCAATTGGCATACGATGATCCTTGCTAGGCTCTTAATTTCTTTGCAGTAAGCTTCCAAGACGTCCCTACATTTCAATACACACAAACATATTAATTAAAAGATGAGGAGAGCGGGATATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCCACTTTGCGGATACGAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCCAAGCTGTCTTCCTGTTG-CCATAGTTTCTTCTTTTCCT</genome_strand>
        <mrna_strand>GGTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTCTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTCAAATGTATCACATTTACGCGCATAATATTTTCA-GCAGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGGAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTACCCTGTTTGGTTCAAGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCGTTTCCTCTTCGTCCATCCTTAAAGCCTTTGACAATTGACATACAATAATCATTGCTAGGCTCTTAATTCCTTTGCAGTATGCTTCCAAGACGTCCCTACA-TT---T---CA-AAACATATTAATTAAAAGATGAGGAGAGCAGGACATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCAACTTTGCGGATATAAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCAAAGCTGTCTTCCTGTTGCCCATAG-TTCTTCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8869" PGL_stop="14168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8869" e_stop="9059"/>
            <exon e_start="10854" e_stop="10990"/>
            <exon e_start="11082" e_stop="11216"/>
            <exon e_start="11630" e_stop="11740"/>
            <exon e_start="11851" e_stop="12117"/>
            <exon e_start="14144" e_stop="14168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.017" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.584" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8869" e_stop="9059" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="9060" i_stop="10853" i_length="1794"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10854" e_stop="10990" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.017" acc_prob="0.922">
            <gDNA_intron_boundary i_start="10991" i_stop="11081" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11082" e_stop="11216" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.584" acc_prob="0.943">
            <gDNA_intron_boundary i_start="11217" i_stop="11629" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11630" e_stop="11740" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.880">
            <gDNA_intron_boundary i_start="11741" i_stop="11850" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11851" e_stop="12117" e_length="267"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12118" i_stop="14143" i_length="2026"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14144" e_stop="14168" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8869" stop="9059"/>
              <exon start="10854" stop="10990"/>
              <exon start="11082" stop="11216"/>
              <exon start="11630" stop="11740"/>
              <exon start="11851" stop="12117"/>
              <exon start="14144" stop="14168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAACATGCAAGGCTCCTCTGCTCTTTCCTGTTCTTCAAATTCTATCTCTGCTCCAGTTGGTCTTTGTTGTTCTCAAAGATTAACACTTCCTTTTCGAAATCAAAGAATTGGGTTTCTGGAAAATCCATCAAGCTTGAAGATTTTCCATTTTCACCGAAACACTACCCTCCCTTTGCTGAACTGCACTG : CTACGGAAGAGATCGTGGAGGCTAGTGAAACAGAGGGATTATTTGTTGAAACTGGGTACATATATAGTGTTCATGGGCTTCAAGGTGAGGTTCGAGTAAAAGCGACAACTGATTTCCCTGAATTGCGATTTTCCCAG : CCAGGAAGGCGATGGTTGAGGCAGCAAGTTACAGGGAGAGATATGATTCAAGAAATCGAACTAGTGGAGGGAAGAGGTCATCCAGGACAGAAGAGTTGGATACTTAAATTCCACGAGATTAACACAATTGAGCAG : GCCCAAAAACTTGTGGGGTCGGCCTTACTGGTGAAGAATGAAGATAGACCAATCCTGGAGGAAGGTGAATTTTACACCCCTGACCTTGTTGGGATGAAAGTATTTCTAAAG : GAAACTAGAGAACTGGTAGGAACTGTTATTAATGTTTTCAACAGTGGAGCTAGTGATCTCCTACATGTTGAGCTTCTACCGAATCAAAATGCAAGACCACAGTTGGAAGGAAGTGCATCTGGTCCTCTTGTATGGGTCCCTTTCGTTGAAGCAATTGTTCCAAATATTGATTTGAGTAAAAGGGAAATGCTGATTACACCTCCAAAGGGTCTTTTAGAATTGAACATCCGTGCAGATGAGAGGTCCAAGAAAGAGAGGCGACAGCTT : GAATGGAAAGAGAGAAAAAAGTCTC</gDNA_template>
            <first_frame> R  K  H  A  R  L  L  C  S  F  L  F  F  K  F  Y  L  C  S  S  W  S  L  L  F  S  K  I  N  T  S  F  S  K  S  K  N  W  V  S  G  K  S  I  K  L  E  D  F  P  F  S  P  K  H  Y  P  P  F  A  E  L  H  C :   Y  G  R  D  R  G  G  *  *  N  R  G  I  I  C  *  N  W  V  H  I  *  C  S  W  A  S  R  *  G  S  S  K  S  D  N  *  F  P  *  I  A  I  F  P   : A  R  K  A  M  V  E  A  A  S  Y  R  E  R  Y  D  S  R  N  R  T  S  G  G  K  R  S  S  R  T  E  E  L  D  T  *  I  P  R  D  *  H  N  *  A   : G  P  K  T  C  G  V  G  L  T  G  E  E  *  R  *  T  N  P  G  G  R  *  I  L  H  P  *  P  C  W  D  E  S  I  S  K   : G  N  *  R  T  G  R  N  C  Y  *  C  F  Q  Q  W  S  *  *  S  P  T  C  *  A  S  T  E  S  K  C  K  T  T  V  G  R  K  C  I  W  S  S  C  M  G  P  F  R  *  S  N  C  S  K  Y  *  F  E  *  K  G  N  A  D  Y  T  S  K  G  S  F  R  I  E  H  P  C  R  *  E  V  Q  E  R  E  A  T  A   : *  M  E  R  E  K  K  V   </first_frame>
            <second_frame>  E  N  M  Q  G  S  S  A  L  S  C  S  S  N  S  I  S  A  P  V  G  L  C  C  S  Q  R  L  T  L  P  F  R  N  Q  R  I  G  F  L  E  N  P  S  S  L  K  I  F  H  F  H  R  N  T  T  L  P  L  L  N  C  T   : A  T  E  E  I  V  E  A  S  E  T  E  G  L  F  V  E  T  G  Y  I  Y  S  V  H  G  L  Q  G  E  V  R  V  K  A  T  T  D  F  P  E  L  R  F  S  Q  :  P  G  R  R  W  L  R  Q  Q  V  T  G  R  D  M  I  Q  E  I  E  L  V  E  G  R  G  H  P  G  Q  K  S  W  I  L  K  F  H  E  I  N  T  I  E  Q  :  A  Q  K  L  V  G  S  A  L  L  V  K  N  E  D  R  P  I  L  E  E  G  E  F  Y  T  P  D  L  V  G  M  K  V  F  L  K  :  E  T  R  E  L  V  G  T  V  I  N  V  F  N  S  G  A  S  D  L  L  H  V  E  L  L  P  N  Q  N  A  R  P  Q  L  E  G  S  A  S  G  P  L  V  W  V  P  F  V  E  A  I  V  P  N  I  D  L  S  K  R  E  M  L  I  T  P  P  K  G  L  L  E  L  N  I  R  A  D  E  R  S  K  K  E  R  R  Q  L  :  E  W  K  E  R  K  K  S  </second_frame>
            <third_frame>   K  T  C  K  A  P  L  L  F  P  V  L  Q  I  L  S  L  L  Q  L  V  F  V  V  L  K  D  *  H  F  L  F  E  I  K  E  L  G  F  W  K  I  H  Q  A  *  R  F  S  I  F  T  E  T  L  P  S  L  C  *  T  A  L  :  L  R  K  R  S  W  R  L  V  K  Q  R  D  Y  L  L  K  L  G  T  Y  I  V  F  M  G  F  K  V  R  F  E  *  K  R  Q  L  I  S  L  N  C  D  F  P  S :   Q  E  G  D  G  *  G  S  K  L  Q  G  E  I  *  F  K  K  S  N  *  W  R  E  E  V  I  Q  D  R  R  V  G  Y  L  N  S  T  R  L  T  Q  L  S  R :   P  K  N  L  W  G  R  P  Y  W  *  R  M  K  I  D  Q  S  W  R  K  V  N  F  T  P  L  T  L  L  G  *  K  Y  F  *  R :   K  L  E  N  W  *  E  L  L  L  M  F  S  T  V  E  L  V  I  S  Y  M  L  S  F  Y  R  I  K  M  Q  D  H  S  W  K  E  V  H  L  V  L  L  Y  G  S  L  S  L  K  Q  L  F  Q  I  L  I  *  V  K  G  K  C  *  L  H  L  Q  R  V  F  *  N  *  T  S  V  Q  M  R  G  P  R  K  R  G  D  S  L :   N  G  K  R  E  K  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8870" stop="9059"/>
                    <exon start="10854" stop="10990"/>
                    <exon start="11082" stop="11216"/>
                    <exon start="11630" stop="11740"/>
                    <exon start="11851" stop="12117"/>
                    <exon start="14144" stop="14167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENMQGSSALSCSSNSISAPVGLCCSQRLTLPFRNQRIGFLENPSSLKIFHFHRNTTLPLLNCTATEEIVEASETEGLFVETGYIYSVHGLQGEVRVKATTDFPELRFSQPGRRWLRQQVTGRDMIQEIELVEGRGHPGQKSWILKFHEINTIEQAQKLVGSALLVKNEDRPILEEGEFYTPDLVGMKVFLKETRELVGTVINVFNSGASDLLHVELLPNQNARPQLEGSASGPLVWVPFVEAIVPNIDLSKREMLITPPKGLLELNIRADERSKKERRQLEWKERKKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22965" PGL_stop="26684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22965" e_stop="23338"/>
            <exon e_start="25329" e_stop="25683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.678" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="22965" e_stop="23338" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.678" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23339" i_stop="25328" i_length="1990"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="25329" e_stop="25683" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22965" stop="23338"/>
              <exon start="25329" stop="25683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAGCCCCTTTTTCCTTTGTTTGTTCTTTTCAATGTTTAATTTCTGTACACAATGTTTGTTCTTTTGTAATCGAAGGTGAAGTAGAGTTACAATGGCGATTCCTCTACTGAAAAAGAAAGTTATCAAGAAAAGGGTGAAGCAATTCAAGAGGCATCAGAGTGATAGGAGAATCACTGTTAAGGTATTGTTTTTTTATTTCTTGAAACCCCTCTTTTGCATTAAGCTCTATTGGGTAATAGTGAAAAAAGCTCGTCTCTTTATGGGTTGACAAAAAAATTGGATTTTGTTGGGTTTTTTGTGTTCGAGAGGGAAAATGATGAGAGTTATTGTCGCCCCAGTCTTAATTTGCATCCAATTTATTGGATTCGCAAG : GTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATC</gDNA_template>
            <first_frame> V  S  P  F  F  L  C  L  F  F  S  M  F  N  F  C  T  Q  C  L  F  F  C  N  R  R  *  S  R  V  T  M  A  I  P  L  L  K  K  K  V  I  K  K  R  V  K  Q  F  K  R  H  Q  S  D  R  R  I  T  V  K  V  L  F  F  Y  F  L  K  P  L  F  C  I  K  L  Y  W  V  I  V  K  K  A  R  L  F  M  G  *  Q  K  N  W  I  L  L  G  F  L  C  S  R  G  K  M  M  R  V  I  V  A  P  V  L  I  C  I  Q  F  I  G  F  A  R :   W  *  L  T  H  C  F  *  S  F  L  N  N  N  I  K  L  Y  I  C  V  V  L  A  F  L  F  D  A  K  L  V  Y  *  V  V  K  R  T  C  D  D  A  Y  P  P  I  L  E  G  S  T  M  N  T  I  H  A  L  P  S  D  L  I  A  C  L  I  I  L  *  G  F  G  F  P  N  F  I  C  I  V  I  W  F  K  G  L  S  V  *  S  L  M  I  F  F  I  I  A  D  *  P  V  I  N  T  R  I  S  P  Y  F  C  W  D  C  I </first_frame>
            <second_frame>  *  A  P  F  S  F  V  C  S  F  Q  C  L  I  S  V  H  N  V  C  S  F  V  I  E  G  E  V  E  L  Q  W  R  F  L  Y  *  K  R  K  L  S  R  K  G  *  S  N  S  R  G  I  R  V  I  G  E  S  L  L  R  Y  C  F  F  I  S  *  N  P  S  F  A  L  S  S  I  G  *  *  *  K  K  L  V  S  L  W  V  D  K  K  I  G  F  C  W  V  F  C  V  R  E  G  K  *  *  E  L  L  S  P  Q  S  *  F  A  S  N  L  L  D  S  Q   : G  G  D  *  L  I  V  S  D  P  S  *  T  I  I  L  N  C  I  F  V  W  F  *  L  S  C  L  M  L  S  L  F  I  E  L  *  K  E  R  V  M  M  R  I  H  L  F  S  R  V  R  R  *  I  Q  Y  M  H  Y  H  L  I  L  *  H  V  S  S  F  F  E  V  L  V  S  P  I  L  S  V  L  *  F  G  L  K  V  *  V  F  S  H  *  *  F  F  S  *  L  L  I  D  Q  *  L  I  Q  E  Y  H  H  I  S  A  G  I  A   </second_frame>
            <third_frame>   E  P  L  F  P  L  F  V  L  F  N  V  *  F  L  Y  T  M  F  V  L  L  *  S  K  V  K  *  S  Y  N  G  D  S  S  T  E  K  E  S  Y  Q  E  K  G  E  A  I  Q  E  A  S  E  *  *  E  N  H  C  *  G  I  V  F  L  F  L  E  T  P  L  L  H  *  A  L  L  G  N  S  E  K  S  S  S  L  Y  G  L  T  K  K  L  D  F  V  G  F  F  V  F  E  R  E  N  D  E  S  Y  C  R  P  S  L  N  L  H  P  I  Y  W  I  R  K  :  V  V  I  D  S  L  F  L  I  L  P  K  Q  *  Y  *  I  V  Y  L  C  G  F  S  F  L  V  *  C  *  A  C  L  L  S  C  E  K  N  V  *  *  C  V  S  T  Y  S  R  G  F  D  D  E  Y  N  T  C  T  T  I  *  S  Y  S  M  S  H  H  S  L  R  F  W  F  P  Q  F  Y  L  Y  C  D  L  V  *  R  F  K  C  L  V  T  D  D  F  F  H  N  C  *  L  T  S  D  *  Y  K  N  I  T  I  F  L  L  G  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0072A04.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24977" e_stop="26684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="24977" e_stop="26684" e_length="1708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24977" stop="26684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCAGACTTTACTCTGTTGCTGGGTGTTTCGTTTTTACGGGCAGAAACTAACTTTAAAGCAGGTCTTGCGACACAGTTGCTTCTCTGTAAATAAGCTTTCTGTTACTTTAACCCTGCTTACATGTCTTCTGTTAAAGGAGATTGTATTTTGTGGCATGAAAAATCTCTGCAATGCTAATATATATTATTTTTCAGCAGCATCTTGTAGTTTATTATTAAACATCATTATTAAATTTATCTACCCTTGTTTGTTGTGCTTATTTTGTTGTTTTTTTGTGTTGGAAATGGAAAGTGATGACAGTGATTGTCGCCCCAGTCTTAAGTTGCATCCAATTTATTGGATTCGCAAGGTGGTGATTGACTCATTGTTTCTGATCCTTCCTAAACAATAATATTAAATTGTATATTTGTGTGGTTTTAGCTTTCTTGTTTGATGCTAAGCTTGTTTATTGAGTTGTGAAAAGAACGTGTGATGATGCGTATCCACCTATTCTCGAGGGTTCGACGATGAATACAATACATGCACTACCATCTGATCTTATAGCATGTCTCATCATTCTTTGAGGTTTTGGTTTCCCCAATTTTATCTGTATTGTGATTTGGTTTAAAGGTTTAAGTGTTTAGTCACTGATGATTTTTTTCATAATTGCTGATTGACCAGTGATTAATACAAGAATATCACCATATTTCTGCTGGGATTGCATCTAAGACATGCTTTGTGCAGTACTATTCTTCAATTTTTGTTTAAAATCTTGTTGCCTATGGTATATCTTATGTCCAGACTACTTTGTTGCTGGGTGTTTCGTTTTATGGGCAGAAATTAAACAAAAGAACAGATCTTGCGACACAGTTGGCTTCAGTATCAATAAGCTTTCTGTTACTGTTAACCCTGCTTACATCCCTCCTATCTTTCAACCTTTTCTATGTATATTTAGTAGTGTTCAACACTTCACTCGATTATATAGACATTTTTGTTTGATGTTTCTCTCAACCCTTGTGAAGAATGTGATTTGTTTCACTTGCCTTGGCCCAAGTCATGTGTGCGAGGTTTACTTAGTGGAAATAATTTTCATTTATCGGACAACTGACAAACTGGCGCAGACCAAAGGGTATTGACTCCAGAGTTGGAAGGAAGTTCAAGGGATGTGTCTTAATGCCCAATATTGGCTACGGTTCTGACAAGATGACTCGCCACTATCTACCCGATGGCTTTAAGATGTTTGTTGTGCACAATGCAAGTGAACTTGATATTTTGTTGATGCGCAACATGTGATGCAAGGGAGCAAAATTTGTTTGCTTATTCCATCCTTGCTTCGCTTCGTGACATCACCATTAGCTTATTCACAGGACTTACTGTGCTGAGATTGCACATAATGTATCCACAAGGAAAAGGAAAGAAATAGTTGAGAGAGTGTCCCAGCTTGATGTCGTAGTAACTAACAAGCTTGCTAGGTTGCGTAGCCAGGAGGATGAATGAGCTTTCTTGGTTGTAAGGGTTGTCAACAGAATTCATCCATAATCAACTGGCAAATGTGTAGCAATGTAATTCTTGATGTACAATTGGTATAGTAAATGAATATAATTCTCTTCACTTGCTTGTAAGAACTTCTAAATGAGAACATTATGACGACGCTAAAAAATACTCCACAATACCATGAGAATGATCATTATGAATAAACGATTGAAAATTCTTAATTATTCCTCCA</gDNA_template>
            <first_frame> C  P  D  F  T  L  L  L  G  V  S  F  L  R  A  E  T  N  F  K  A  G  L  A  T  Q  L  L  L  C  K  *  A  F  C  Y  F  N  P  A  Y  M  S  S  V  K  G  D  C  I  L  W  H  E  K  S  L  Q  C  *  Y  I  L  F  F  S  S  I  L  *  F  I  I  K  H  H  Y  *  I  Y  L  P  L  F  V  V  L  I  L  L  F  F  C  V  G  N  G  K  *  *  Q  *  L  S  P  Q  S  *  V  A  S  N  L  L  D  S  Q  G  G  D  *  L  I  V  S  D  P  S  *  T  I  I  L  N  C  I  F  V  W  F  *  L  S  C  L  M  L  S  L  F  I  E  L  *  K  E  R  V  M  M  R  I  H  L  F  S  R  V  R  R  *  I  Q  Y  M  H  Y  H  L  I  L  *  H  V  S  S  F  F  E  V  L  V  S  P  I  L  S  V  L  *  F  G  L  K  V  *  V  F  S  H  *  *  F  F  S  *  L  L  I  D  Q  *  L  I  Q  E  Y  H  H  I  S  A  G  I  A  S  K  T  C  F  V  Q  Y  Y  S  S  I  F  V  *  N  L  V  A  Y  G  I  S  Y  V  Q  T  T  L  L  L  G  V  S  F  Y  G  Q  K  L  N  K  R  T  D  L  A  T  Q  L  A  S  V  S  I  S  F  L  L  L  L  T  L  L  T  S  L  L  S  F  N  L  F  Y  V  Y  L  V  V  F  N  T  S  L  D  Y  I  D  I  F  V  *  C  F  S  Q  P  L  *  R  M  *  F  V  S  L  A  L  A  Q  V  M  C  A  R  F  T  *  W  K  *  F  S  F  I  G  Q  L  T  N  W  R  R  P  K  G  I  D  S  R  V  G  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  M  T  R  H  Y  L  P  D  G  F  K  M  F  V  V  H  N  A  S  E  L  D  I  L  L  M  R  N  M  *  C  K  G  A  K  F  V  C  L  F  H  P  C  F  A  S  *  H  H  H  *  L  I  H  R  T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  V  S  Q  L  D  V  V  V  T  N  K  L  A  R  L  R  S  Q  E  D  E  *  A  F  L  V  V  R  V  V  N  R  I  H  P  *  S  T  G  K  C  V  A  M  *  F  L  M  Y  N  W  Y  S  K  *  I  *  F  S  S  L  A  C  K  N  F  *  M  R  T  L  *  R  R  *  K  I  L  H  N  T  M  R  M  I  I  M  N  K  R  L  K  I  L  N  Y  S  S  </first_frame>
            <second_frame>  V  Q  T  L  L  C  C  W  V  F  R  F  Y  G  Q  K  L  T  L  K  Q  V  L  R  H  S  C  F  S  V  N  K  L  S  V  T  L  T  L  L  T  C  L  L  L  K  E  I  V  F  C  G  M  K  N  L  C  N  A  N  I  Y  Y  F  S  A  A  S  C  S  L  L  L  N  I  I  I  K  F  I  Y  P  C  L  L  C  L  F  C  C  F  F  V  L  E  M  E  S  D  D  S  D  C  R  P  S  L  K  L  H  P  I  Y  W  I  R  K  V  V  I  D  S  L  F  L  I  L  P  K  Q  *  Y  *  I  V  Y  L  C  G  F  S  F  L  V  *  C  *  A  C  L  L  S  C  E  K  N  V  *  *  C  V  S  T  Y  S  R  G  F  D  D  E  Y  N  T  C  T  T  I  *  S  Y  S  M  S  H  H  S  L  R  F  W  F  P  Q  F  Y  L  Y  C  D  L  V  *  R  F  K  C  L  V  T  D  D  F  F  H  N  C  *  L  T  S  D  *  Y  K  N  I  T  I  F  L  L  G  L  H  L  R  H  A  L  C  S  T  I  L  Q  F  L  F  K  I  L  L  P  M  V  Y  L  M  S  R  L  L  C  C  W  V  F  R  F  M  G  R  N  *  T  K  E  Q  I  L  R  H  S  W  L  Q  Y  Q  *  A  F  C  Y  C  *  P  C  L  H  P  S  Y  L  S  T  F  S  M  Y  I  *  *  C  S  T  L  H  S  I  I  *  T  F  L  F  D  V  S  L  N  P  C  E  E  C  D  L  F  H  L  P  W  P  K  S  C  V  R  G  L  L  S  G  N  N  F  H  L  S  D  N  *  Q  T  G  A  D  Q  R  V  L  T  P  E  L  E  G  S  S  R  D  V  S  *  C  P  I  L  A  T  V  L  T  R  *  L  A  T  I  Y  P  M  A  L  R  C  L  L  C  T  M  Q  V  N  L  I  F  C  *  C  A  T  C  D  A  R  E  Q  N  L  F  A  Y  S  I  L  A  S  L  R  D  I  T  I  S  L  F  T  G  L  T  V  L  R  L  H  I  M  Y  P  Q  G  K  G  K  K  *  L  R  E  C  P  S  L  M  S  *  *  L  T  S  L  L  G  C  V  A  R  R  M  N  E  L  S  W  L  *  G  L  S  T  E  F  I  H  N  Q  L  A  N  V  *  Q  C  N  S  *  C  T  I  G  I  V  N  E  Y  N  S  L  H  L  L  V  R  T  S  K  *  E  H  Y  D  D  A  K  K  Y  S  T  I  P  *  E  *  S  L  *  I  N  D  *  K  F  L  I  I  P  P </second_frame>
            <third_frame>   S  R  L  Y  S  V  A  G  C  F  V  F  T  G  R  N  *  L  *  S  R  S  C  D  T  V  A  S  L  *  I  S  F  L  L  L  *  P  C  L  H  V  F  C  *  R  R  L  Y  F  V  A  *  K  I  S  A  M  L  I  Y  I  I  F  Q  Q  H  L  V  V  Y  Y  *  T  S  L  L  N  L  S  T  L  V  C  C  A  Y  F  V  V  F  L  C  W  K  W  K  V  M  T  V  I  V  A  P  V  L  S  C  I  Q  F  I  G  F  A  R  W  *  L  T  H  C  F  *  S  F  L  N  N  N  I  K  L  Y  I  C  V  V  L  A  F  L  F  D  A  K  L  V  Y  *  V  V  K  R  T  C  D  D  A  Y  P  P  I  L  E  G  S  T  M  N  T  I  H  A  L  P  S  D  L  I  A  C  L  I  I  L  *  G  F  G  F  P  N  F  I  C  I  V  I  W  F  K  G  L  S  V  *  S  L  M  I  F  F  I  I  A  D  *  P  V  I  N  T  R  I  S  P  Y  F  C  W  D  C  I  *  D  M  L  C  A  V  L  F  F  N  F  C  L  K  S  C  C  L  W  Y  I  L  C  P  D  Y  F  V  A  G  C  F  V  L  W  A  E  I  K  Q  K  N  R  S  C  D  T  V  G  F  S  I  N  K  L  S  V  T  V  N  P  A  Y  I  P  P  I  F  Q  P  F  L  C  I  F  S  S  V  Q  H  F  T  R  L  Y  R  H  F  C  L  M  F  L  S  T  L  V  K  N  V  I  C  F  T  C  L  G  P  S  H  V  C  E  V  Y  L  V  E  I  I  F  I  Y  R  T  T  D  K  L  A  Q  T  K  G  Y  *  L  Q  S  W  K  E  V  Q  G  M  C  L  N  A  Q  Y  W  L  R  F  *  Q  D  D  S  P  L  S  T  R  W  L  *  D  V  C  C  A  Q  C  K  *  T  *  Y  F  V  D  A  Q  H  V  M  Q  G  S  K  I  C  L  L  I  P  S  L  L  R  F  V  T  S  P  L  A  Y  S  Q  D  L  L  C  *  D  C  T  *  C  I  H  K  E  K  E  R  N  S  *  E  S  V  P  A  *  C  R  S  N  *  Q  A  C  *  V  A  *  P  G  G  *  M  S  F  L  G  C  K  G  C  Q  Q  N  S  S  I  I  N  W  Q  M  C  S  N  V  I  L  D  V  Q  L  V  *  *  M  N  I  I  L  F  T  C  L  *  E  L  L  N  E  N  I  M  T  T  L  K  N  T  P  Q  Y  H  E  N  D  H  Y  E  *  T  I  E  N  S  *  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25687" stop="26094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMLCAVLFFNFCLKSCCLWYILCPDYFVAGCFVLWAEIKQKNRSCDTVGFSINKLSVTVNPAYIPPIFQPFLCIFSSVQHFTRLYRHFCLMFLSTLVKNVICFTCLGPSHVCEVYLVEIIFIYRTTDKLAQTKGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24978" stop="25370"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTLLCCWVFRFYGQKLTLKQVLRHSCFSVNKLSVTLTLLTCLLLKEIVFCGMKNLCNANIYYFSAASCSLLLNIIIKFIYPCLLCLFCCFFVLEMESDDSDCRPSLKLHPIYWIRKVVIDSLFLILPKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="32208" PGL_stop="33456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32208" e_stop="32464"/>
            <exon e_start="32684" e_stop="32903"/>
            <exon e_start="33037" e_stop="33082"/>
            <exon e_start="33162" e_stop="33456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="32208" e_stop="32464" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32465" i_stop="32683" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32684" e_stop="32903" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.930">
            <gDNA_intron_boundary i_start="32904" i_stop="33036" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33037" e_stop="33082" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.953">
            <gDNA_intron_boundary i_start="33083" i_stop="33161" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33162" e_stop="33456" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32208" stop="32464"/>
              <exon start="32684" stop="32903"/>
              <exon start="33037" stop="33082"/>
              <exon start="33162" stop="33456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATCACATGCATTTGTACAACATAATCTTCTTAGCCTTTACAACACAAAAAAAGAAAAAAACTTATTCAGTTTTCATCAAAAAGAGGTTTCAAGCCTTACTATCATTATCATTTTCAAGAACCAAGAATGGCTAGTGAGCAGATGAAACCTGTTGCATCTTTGCTTTTGGTCCTTAATTTCTGCATGTATGTTGTTGTTTTAGGTATTGGTGGTTGGGCTATGAACTTTGCCATTGATAATGGTTTTGTCATTG : GTCCAGGAATGAATCTTCCAGCACATTTCTCACCAATTTACTTCCCAATTGGAAATGCTGCCACTGGATTCTTTGTTGTATTTGCTTTGATAGCAGGTGTGGTTGGAGTTGCATCTGTTCTCTCTGGACTTAACCACATTCGCCATTGGAACATCGATAGCTTACCATCTGCTGCTTCTGCTGCTACAATAGCCTGGAGTCTTACAGTCCTTGCCATGGG : CTTTGCTTGGAAAGAAATTGAACTCAACTACAGGAATTCCAAATTG : AAAACAATGGAGGCATTCATGATAATTCTATCATTTACTCAACTGGTATACATAGCTGCCATTCATGGTGCTTCATCAAGGAGATAAATGAGCTTCGAAGATAAATCGTATCGTGTGAAATTTATTGATTGAGACTGTTGTTTCCTTTTCTTTTTTTGTTTTAACAATTGTGTCATTGTATTTATTCATTATTGTGTACACAAAGTTGGCCAGATGGCTGTTTGTATATCAACTATCTTCAGTATTCATATTGTAAGAAACAAATAAGTGATGTACCCTTCATTGGCTTTTTCCC</gDNA_template>
            <first_frame> R  H  H  M  H  L  Y  N  I  I  F  L  A  F  T  T  Q  K  K  K  K  T  Y  S  V  F  I  K  K  R  F  Q  A  L  L  S  L  S  F  S  R  T  K  N  G  *  *  A  D  E  T  C  C  I  F  A  F  G  P  *  F  L  H  V  C  C  C  F  R  Y  W  W  L  G  Y  E  L  C  H  *  *  W  F  C  H  W :   S  R  N  E  S  S  S  T  F  L  T  N  L  L  P  N  W  K  C  C  H  W  I  L  C  C  I  C  F  D  S  R  C  G  W  S  C  I  C  S  L  W  T  *  P  H  S  P  L  E  H  R  *  L  T  I  C  C  F  C  C  Y  N  S  L  E  S  Y  S  P  C  H  G  :  L  C  L  E  R  N  *  T  Q  L  Q  E  F  Q  I   : E  N  N  G  G  I  H  D  N  S  I  I  Y  S  T  G  I  H  S  C  H  S  W  C  F  I  K  E  I  N  E  L  R  R  *  I  V  S  C  E  I  Y  *  L  R  L  L  F  P  F  L  F  L  F  *  Q  L  C  H  C  I  Y  S  L  L  C  T  Q  S  W  P  D  G  C  L  Y  I  N  Y  L  Q  Y  S  Y  C  K  K  Q  I  S  D  V  P  F  I  G  F  F   </first_frame>
            <second_frame>  D  I  T  C  I  C  T  T  *  S  S  *  P  L  Q  H  K  K  R  K  K  L  I  Q  F  S  S  K  R  G  F  K  P  Y  Y  H  Y  H  F  Q  E  P  R  M  A  S  E  Q  M  K  P  V  A  S  L  L  L  V  L  N  F  C  M  Y  V  V  V  L  G  I  G  G  W  A  M  N  F  A  I  D  N  G  F  V  I   : G  P  G  M  N  L  P  A  H  F  S  P  I  Y  F  P  I  G  N  A  A  T  G  F  F  V  V  F  A  L  I  A  G  V  V  G  V  A  S  V  L  S  G  L  N  H  I  R  H  W  N  I  D  S  L  P  S  A  A  S  A  A  T  I  A  W  S  L  T  V  L  A  M  G :   F  A  W  K  E  I  E  L  N  Y  R  N  S  K  L  :  K  T  M  E  A  F  M  I  I  L  S  F  T  Q  L  V  Y  I  A  A  I  H  G  A  S  S  R  R  *  M  S  F  E  D  K  S  Y  R  V  K  F  I  D  *  D  C  C  F  L  F  F  F  C  F  N  N  C  V  I  V  F  I  H  Y  C  V  H  K  V  G  Q  M  A  V  C  I  S  T  I  F  S  I  H  I  V  R  N  K  *  V  M  Y  P  S  L  A  F  S  </second_frame>
            <third_frame>   T  S  H  A  F  V  Q  H  N  L  L  S  L  Y  N  T  K  K  E  K  N  L  F  S  F  H  Q  K  E  V  S  S  L  T  I  I  I  I  F  K  N  Q  E  W  L  V  S  R  *  N  L  L  H  L  C  F  W  S  L  I  S  A  C  M  L  L  F  *  V  L  V  V  G  L  *  T  L  P  L  I  M  V  L  S  L  :  V  Q  E  *  I  F  Q  H  I  S  H  Q  F  T  S  Q  L  E  M  L  P  L  D  S  L  L  Y  L  L  *  *  Q  V  W  L  E  L  H  L  F  S  L  D  L  T  T  F  A  I  G  T  S  I  A  Y  H  L  L  L  L  L  L  Q  *  P  G  V  L  Q  S  L  P  W   : A  L  L  G  K  K  L  N  S  T  T  G  I  P  N  * :   K  Q  W  R  H  S  *  *  F  Y  H  L  L  N  W  Y  T  *  L  P  F  M  V  L  H  Q  G  D  K  *  A  S  K  I  N  R  I  V  *  N  L  L  I  E  T  V  V  S  F  S  F  F  V  L  T  I  V  S  L  Y  L  F  I  I  V  Y  T  K  L  A  R  W  L  F  V  Y  Q  L  S  S  V  F  I  L  *  E  T  N  K  *  C  T  L  H  W  L  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32245" stop="32464"/>
                    <exon start="32684" stop="32903"/>
                    <exon start="33037" stop="33082"/>
                    <exon start="33162" stop="33248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLQHKKRKKLIQFSSKRGFKPYYHYHFQEPRMASEQMKPVASLLLVLNFCMYVVVLGIGGWAMNFAIDNGFVIGPGMNLPAHFSPIYFPIGNAATGFFVVFALIAGVVGVASVLSGLNHIRHWNIDSLPSAASAATIAWSLTVLAMGFAWKEIELNYRNSKLKTMEAFMIILSFTQLVYIAAIHGASSRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38932" PGL_stop="33832"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38932" e_stop="38618"/>
            <exon e_start="38132" e_stop="37045"/>
            <exon e_start="36929" e_stop="36834"/>
            <exon e_start="34236" e_stop="33832"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="0.990"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38932" e_stop="38618" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38617" i_stop="38133" i_length="485"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38132" e_stop="37045" e_length="1088"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="36929" e_stop="36834" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36833" i_stop="34237" i_length="2597"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="34236" e_stop="33832" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38932" stop="38618"/>
              <exon start="38132" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="34236" stop="33832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTCGTTTGATTTTCATAGAAATAGAGGGGACCCAATACCCATCTGTTACTCACTCTTCTCCATTGGTACTACCAAACTTCAAAATCCCCCCATTCCCCAATACACCACAAAACTAAGCTAAAACAAGAACAAGATTCTTCAATTTCAGATTTTGAAACACAAACAAAAGATCCCATTTCTTGCAAAACAGAGCAACAGTAGTTCCATAAAACCCAAAACATGCCTTCAGGTGCTAAGAAGCGAAAAGCTGCTAAGAAAAAGAAGCAGGTTCAAGCAGTAGAACCTCCTTCTCGAAGTACCGGTTCTTTTCCTG : GTGAGGAGGATCTGAAGCGTGATGATAAAGAGAGTGACAGTGAGGGTAGTTCCCCTGCATCTCAAGATTATCAGAATCACCAAAACCAGTTTACTGAAGGAGAGGTTGAAGATGGAGAGAAGCAATTGGATGATTCACGTGATCGGTCAATTGAAGAAAATGAATTCAATGGGGTGAAACATGAAGGCAAGGAAGTGGAAATTGCTGGAAATGAAGAAGGAGGTCTTGTTCAGGTTGAAAGGGAATTGAAGGTTGAGTGTGAATCTGAGAGCCAGAAGATAAGTGTTGAGAATGCTGAAATCATGATTGAATCCAACCCAGGAGGGTTGCAAAGGAGTTCCAGTAGCAGCAGCAGTAGCAGCTCAGTAGAAAAATATGATGTTGCTGATAAGAATGATGTTGTGGTTGATGATGCTCCAACTGTTGAATTAGCGAAAGGTATTGAATCTTTGCCTGGTAAGAATAGTATTATGGTTGATGATGCTCCAGTTGTTGAATTAGTGAAAGAGATTGAATCTTTGCTTGATAAGAATAGTATTGTGGTTGATGATGATGCTCCAGCTGTTGGATTAGTGAAAGATAATGAATCTTTGCCTGATGAACAAGTTGCTGATATCCTTGTGGGAACAATCTCTGCATGTGATTTGGATAAGGCTGCAATATCAGAAGACATAGTTCAAGTCACAGCAAGTGCTTCAGATGCTGATAATGTGATTGCATCTGCTGTTGAATCGGTGGTGGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG : TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG : AATAAGAGCATGAAGCTGGTTGAATGGAGTAGCAAACATTTGGAATCCTAGAAGTTGATGACTACCTTCATTCTCTTGAACAGTGTCTTTGCAAGGGGTCTTGTTATAGAAACTTATATGTTCAGTACTTATAGTTTAGTTTGAAAAAGCAGCTGAGAACTTCTCGTCTCTTTGCTGCTTTCCTGGTATTTTGCAGTGGTTAGTTTCTTTTCTCGAATGTTCTATTGGTGTGATGTACCTGCTCCTCAGGGAGTTGGAAGCACCTTTCTTAATGTTTTTGCACAGGACACTTGGAATTGTTATTTATCCAAAATTTCACCAGCATATAGTTATATCCTTTGGGTTCAGACATAAGCTTCAAAGCTTTGTTATTAATAGTCACTCCTTTTACTTCTCTTCACTAAG</gDNA_template>
            <first_frame> A  S  F  D  F  H  R  N  R  G  D  P  I  P  I  C  Y  S  L  F  S  I  G  T  T  K  L  Q  N  P  P  I  P  Q  Y  T  T  K  L  S  *  N  K  N  K  I  L  Q  F  Q  I  L  K  H  K  Q  K  I  P  F  L  A  K  Q  S  N  S  S  S  I  K  P  K  T  C  L  Q  V  L  R  S  E  K  L  L  R  K  R  S  R  F  K  Q  *  N  L  L  L  E  V  P  V  L  F  L  :  V  R  R  I  *  S  V  M  I  K  R  V  T  V  R  V  V  P  L  H  L  K  I  I  R  I  T  K  T  S  L  L  K  E  R  L  K  M  E  R  S  N  W  M  I  H  V  I  G  Q  L  K  K  M  N  S  M  G  *  N  M  K  A  R  K  W  K  L  L  E  M  K  K  E  V  L  F  R  L  K  G  N  *  R  L  S  V  N  L  R  A  R  R  *  V  L  R  M  L  K  S  *  L  N  P  T  Q  E  G  C  K  G  V  P  V  A  A  A  V  A  A  Q  *  K  N  M  M  L  L  I  R  M  M  L  W  L  M  M  L  Q  L  L  N  *  R  K  V  L  N  L  C  L  V  R  I  V  L  W  L  M  M  L  Q  L  L  N  *  *  K  R  L  N  L  C  L  I  R  I  V  L  W  L  M  M  M  L  Q  L  L  D  *  *  K  I  M  N  L  C  L  M  N  K  L  L  I  S  L  W  E  Q  S  L  H  V  I  W  I  R  L  Q  Y  Q  K  T  *  F  K  S  Q  Q  V  L  Q  M  L  I  M  *  L  H  L  L  L  N  R  W  W  R  R  K  G  K  K  I  C  V  L  L  M  R  K  I  Q  L  Q  I  L  L  W  K  I  G  R  K  I  W  V  L  *  L  T  K  P  L  F  Q  K  F  *  W  R  Q  D  R  R  K  E  M  K  Q  L  L  Q  C  H  A  M  P  V  Q  Y  Q  V  V  I  L  *  K  V  Q  M  Q  R  L  L  R  S  *  K  M  K  K  K  *  R  H  P  T  V  L  L  K  L  M  L  V  F  L  Q  M  *  K  N  L  Q  L  E  N  A  M  A  I  S :   L  Q  R  Y  L  H  D  Q  C  K  Q  L  P  G  K  V  A  V  A  C  L  S  C  L  Q  D  Q  I  D  E  S  R :   I  R  A  *  S  W  L  N  G  V  A  N  I  W  N  P  R  S  *  *  L  P  S  F  S  *  T  V  S  L  Q  G  V  L  L  *  K  L  I  C  S  V  L  I  V  *  F  E  K  A  A  E  N  F  S  S  L  C  C  F  P  G  I  L  Q  W  L  V  S  F  L  E  C  S  I  G  V  M  Y  L  L  L  R  E  L  E  A  P  F  L  M  F  L  H  R  T  L  G  I  V  I  Y  P  K  F  H  Q  H  I  V  I  S  F  G  F  R  H  K  L  Q  S  F  V  I  N  S  H  S  F  Y  F  S  S  L   </first_frame>
            <second_frame>  L  R  L  I  F  I  E  I  E  G  T  Q  Y  P  S  V  T  H  S  S  P  L  V  L  P  N  F  K  I  P  P  F  P  N  T  P  Q  N  *  A  K  T  R  T  R  F  F  N  F  R  F  *  N  T  N  K  R  S  H  F  L  Q  N  R  A  T  V  V  P  *  N  P  K  H  A  F  R  C  *  E  A  K  S  C  *  E  K  E  A  G  S  S  S  R  T  S  F  S  K  Y  R  F  F  S  W :   *  G  G  S  E  A  *  *  *  R  E  *  Q  *  G  *  F  P  C  I  S  R  L  S  E  S  P  K  P  V  Y  *  R  R  G  *  R  W  R  E  A  I  G  *  F  T  *  S  V  N  *  R  K  *  I  Q  W  G  E  T  *  R  Q  G  S  G  N  C  W  K  *  R  R  R  S  C  S  G  *  K  G  I  E  G  *  V  *  I  *  E  P  E  D  K  C  *  E  C  *  N  H  D  *  I  Q  P  R  R  V  A  K  E  F  Q  *  Q  Q  Q  *  Q  L  S  R  K  I  *  C  C  *  *  E  *  C  C  G  *  *  C  S  N  C  *  I  S  E  R  Y  *  I  F  A  W  *  E  *  Y  Y  G  *  *  C  S  S  C  *  I  S  E  R  D  *  I  F  A  *  *  E  *  Y  C  G  *  *  *  C  S  S  C  W  I  S  E  R  *  *  I  F  A  *  *  T  S  C  *  Y  P  C  G  N  N  L  C  M  *  F  G  *  G  C  N  I  R  R  H  S  S  S  H  S  K  C  F  R  C  *  *  C  D  C  I  C  C  *  I  G  G  G  G  E  R  G  R  K  S  V  C  C  *  *  E  R  Y  S  F  R  Y  C  C  G  K  L  E  G  K  F  G  C  Y  S  *  Q  S  H  Y  F  R  S  S  D  G  D  R  I  G  E  K  R  *  N  S  Y  C  S  V  M  Q  C  Q  C  N  I  K  W  *  Y  F  R  K  Y  R  C  K  G  F  C  D  R  R  K  *  R  K  N  R  G  T  P  Q  C  S  *  N  *  C  *  C  F  C  R  C  E  R  I  S  S  S  R  M  P  W  P  S   : V  Y  S  V  T  F  T  T  S  A  N  N  F  L  E  K  L  L  W  L  V  *  V  V  C  R  I  K  *  M  N  R   : E  *  E  H  E  A  G  *  M  E  *  Q  T  F  G  I  L  E  V  D  D  Y  L  H  S  L  E  Q  C  L  C  K  G  S  C  Y  R  N  L  Y  V  Q  Y  L  *  F  S  L  K  K  Q  L  R  T  S  R  L  F  A  A  F  L  V  F  C  S  G  *  F  L  F  S  N  V  L  L  V  *  C  T  C  S  S  G  S  W  K  H  L  S  *  C  F  C  T  G  H  L  E  L  L  F  I  Q  N  F  T  S  I  *  L  Y  P  L  G  S  D  I  S  F  K  A  L  L  L  I  V  T  P  F  T  S  L  H  *  </second_frame>
            <third_frame>   F  V  *  F  S  *  K  *  R  G  P  N  T  H  L  L  L  T  L  L  H  W  Y  Y  Q  T  S  K  S  P  H  S  P  I  H  H  K  T  K  L  K  Q  E  Q  D  S  S  I  S  D  F  E  T  Q  T  K  D  P  I  S  C  K  T  E  Q  Q  *  F  H  K  T  Q  N  M  P  S  G  A  K  K  R  K  A  A  K  K  K  K  Q  V  Q  A  V  E  P  P  S  R  S  T  G  S  F  P   : G  E  E  D  L  K  R  D  D  K  E  S  D  S  E  G  S  S  P  A  S  Q  D  Y  Q  N  H  Q  N  Q  F  T  E  G  E  V  E  D  G  E  K  Q  L  D  D  S  R  D  R  S  I  E  E  N  E  F  N  G  V  K  H  E  G  K  E  V  E  I  A  G  N  E  E  G  G  L  V  Q  V  E  R  E  L  K  V  E  C  E  S  E  S  Q  K  I  S  V  E  N  A  E  I  M  I  E  S  N  P  G  G  L  Q  R  S  S  S  S  S  S  S  S  S  S  V  E  K  Y  D  V  A  D  K  N  D  V  V  V  D  D  A  P  T  V  E  L  A  K  G  I  E  S  L  P  G  K  N  S  I  M  V  D  D  A  P  V  V  E  L  V  K  E  I  E  S  L  L  D  K  N  S  I  V  V  D  D  D  A  P  A  V  G  L  V  K  D  N  E  S  L  P  D  E  Q  V  A  D  I  L  V  G  T  I  S  A  C  D  L  D  K  A  A  I  S  E  D  I  V  Q  V  T  A  S  A  S  D  A  D  N  V  I  A  S  A  V  E  S  V  V  E  E  K  G  E  E  N  L  C  V  V  D  E  K  D  T  A  S  D  T  V  V  E  N  W  K  E  N  L  G  A  I  V  D  K  A  T  I  S  E  V  L  M  E  T  G  S  E  K  R  D  E  T  A  T  A  V  S  C  N  A  S  A  I  S  S  G  N  T  L  E  S  T  D  A  K  A  F  A  I  V  E  N  E  E  K  I  E  A  P  H  S  A  P  K  I  D  A  S  V  S  A  D  V  K  E  S  P  A  R  E  C  H  G  H  Q  :  F  T  A  L  P  S  R  P  V  Q  T  T  S  W  K  S  C  C  G  L  F  E  L  F  A  G  S  N  R  *  I  E  :  N  K  S  M  K  L  V  E  W  S  S  K  H  L  E  S  *  K  L  M  T  T  F  I  L  L  N  S  V  F  A  R  G  L  V  I  E  T  Y  M  F  S  T  Y  S  L  V  *  K  S  S  *  E  L  L  V  S  L  L  L  S  W  Y  F  A  V  V  S  F  F  S  R  M  F  Y  W  C  D  V  P  A  P  Q  G  V  G  S  T  F  L  N  V  F  A  Q  D  T  W  N  C  Y  L  S  K  I  S  P  A  Y  S  Y  I  L  W  V  Q  T  *  A  S  K  L  C  Y  *  *  S  L  L  L  L  L  F  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38729" stop="38618"/>
                    <exon start="38132" stop="37045"/>
                    <exon start="36929" stop="36840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHKTQNMPSGAKKRKAAKKKKQVQAVEPPSRSTGSFPGEEDLKRDDKESDSEGSSPASQDYQNHQNQFTEGEVEDGEKQLDDSRDRSIEENEFNGVKHEGKEVEIAGNEEGGLVQVERELKVECESESQKISVENAEIMIESNPGGLQRSSSSSSSSSSVEKYDVADKNDVVVDDAPTVELAKGIESLPGKNSIMVDDAPVVELVKEIESLLDKNSIVVDDDAPAVGLVKDNESLPDEQVADILVGTISACDLDKAAISEDIVQVTASASDADNVIASAVESVVEEKGEENLCVVDEKDTASDTVVENWKENLGAIVDKATISEVLMETGSEKRDETATAVSCNASAISSGNTLESTDAKAFAIVENEEKIEAPHSAPKIDASVSADVKESPARECHGHQFTALPSRPVQTTSWKSCCGLFELFAGSNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34097" stop="33834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKAAENFSSLCCFPGILQWLVSFLECSIGVMYLLLRELEAPFLMFLHRTLGIVIYPKFHQHIVISFGFRHKLQSFVINSHSFYFSSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37393" e_stop="37045"/>
            <exon e_start="36929" e_stop="36834"/>
            <exon e_start="35953" e_stop="35665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.955" e_score="0.990"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37393" e_stop="37045" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37044" i_stop="36930" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="36929" e_stop="36834" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.955">
            <gDNA_intron_boundary i_start="36833" i_stop="35954" i_length="880"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="35953" e_stop="35665" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37393" stop="37045"/>
              <exon start="36929" stop="36834"/>
              <exon start="35953" stop="35665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAGAAAGGGGAAGAAAATCTGTGTGTTGTTGATGAGAAAGATACAGCTTCAGATACTGTTGTGGAAAATTGGAAGGAAAATTTGGGTGCTATAGTTGACAAAGCCACTATTTCAGAAGTTCTGATGGAGACAGGATCGGAGAAAAGAGATGAAACAGCTACTGCAGTGTCATGCAATGCCAGTGCAATATCAAGTGGTAATACTTTAGAAAGTACAGATGCAAAGGCTTTTGCGATCGTAGAAAATGAAGAAAAAATAGAGGCACCCCACAGTGCTCCTAAAATTGATGCTAGTGTTTCTGCAGATGTGAAAGAATCTCCAGCTCGAGAATGCCATGGCCATCAG : TTTACAGCGTTACCTTCACGACCAGTGCAAACAACTTCCTGGAAAAGTTGCTGTGGCTTGTTTGAGTTGTTTGCAGGATCAAATAGATGAATCGAG : AGGCAGGGAGGTCACTGAGATGTGTTTTAGTTGGATTGCTAGAGTCTTTGTCTGTATCGAGACGTGTATGTTGGAAGAAATTATAGAGAACATCTTCGGCTGAAAACCTCAAGTTTTTAAACATTGAAATTCGTTTCAAATGGAGCAAATCTGTAGTTTGGAATCGAGGGATTGTTTTCACTGTTGTATATCTTAGTAGGGTTTGATTTATATTGTTGCCTCTGTCCCATTTTATGATTTTAGTCCTTATGAAAAGAAGAGCACCTTTATATACTGAAACAATTTAACT</gDNA_template>
            <first_frame> G  G  E  R  G  R  K  S  V  C  C  *  *  E  R  Y  S  F  R  Y  C  C  G  K  L  E  G  K  F  G  C  Y  S  *  Q  S  H  Y  F  R  S  S  D  G  D  R  I  G  E  K  R  *  N  S  Y  C  S  V  M  Q  C  Q  C  N  I  K  W  *  Y  F  R  K  Y  R  C  K  G  F  C  D  R  R  K  *  R  K  N  R  G  T  P  Q  C  S  *  N  *  C  *  C  F  C  R  C  E  R  I  S  S  S  R  M  P  W  P  S   : V  Y  S  V  T  F  T  T  S  A  N  N  F  L  E  K  L  L  W  L  V  *  V  V  C  R  I  K  *  M  N  R   : E  A  G  R  S  L  R  C  V  L  V  G  L  L  E  S  L  S  V  S  R  R  V  C  W  K  K  L  *  R  T  S  S  A  E  N  L  K  F  L  N  I  E  I  R  F  K  W  S  K  S  V  V  W  N  R  G  I  V  F  T  V  V  Y  L  S  R  V  *  F  I  L  L  P  L  S  H  F  M  I  L  V  L  M  K  R  R  A  P  L  Y  T  E  T  I  *   </first_frame>
            <second_frame>  E  E  K  G  E  E  N  L  C  V  V  D  E  K  D  T  A  S  D  T  V  V  E  N  W  K  E  N  L  G  A  I  V  D  K  A  T  I  S  E  V  L  M  E  T  G  S  E  K  R  D  E  T  A  T  A  V  S  C  N  A  S  A  I  S  S  G  N  T  L  E  S  T  D  A  K  A  F  A  I  V  E  N  E  E  K  I  E  A  P  H  S  A  P  K  I  D  A  S  V  S  A  D  V  K  E  S  P  A  R  E  C  H  G  H  Q  :  F  T  A  L  P  S  R  P  V  Q  T  T  S  W  K  S  C  C  G  L  F  E  L  F  A  G  S  N  R  *  I  E  :  R  Q  G  G  H  *  D  V  F  *  L  D  C  *  S  L  C  L  Y  R  D  V  Y  V  G  R  N  Y  R  E  H  L  R  L  K  T  S  S  F  *  T  L  K  F  V  S  N  G  A  N  L  *  F  G  I  E  G  L  F  S  L  L  Y  I  L  V  G  F  D  L  Y  C  C  L  C  P  I  L  *  F  *  S  L  *  K  E  E  H  L  Y  I  L  K  Q  F  N  </second_frame>
            <third_frame>   R  R  K  G  K  K  I  C  V  L  L  M  R  K  I  Q  L  Q  I  L  L  W  K  I  G  R  K  I  W  V  L  *  L  T  K  P  L  F  Q  K  F  *  W  R  Q  D  R  R  K  E  M  K  Q  L  L  Q  C  H  A  M  P  V  Q  Y  Q  V  V  I  L  *  K  V  Q  M  Q  R  L  L  R  S  *  K  M  K  K  K  *  R  H  P  T  V  L  L  K  L  M  L  V  F  L  Q  M  *  K  N  L  Q  L  E  N  A  M  A  I  S :   L  Q  R  Y  L  H  D  Q  C  K  Q  L  P  G  K  V  A  V  A  C  L  S  C  L  Q  D  Q  I  D  E  S  R :   G  R  E  V  T  E  M  C  F  S  W  I  A  R  V  F  V  C  I  E  T  C  M  L  E  E  I  I  E  N  I  F  G  *  K  P  Q  V  F  K  H  *  N  S  F  Q  M  E  Q  I  C  S  L  E  S  R  D  C  F  H  C  C  I  S  *  *  G  L  I  Y  I  V  A  S  V  P  F  Y  D  F  S  P  Y  E  K  K  S  T  F  I  Y  *  N  N  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37392" stop="37045"/>
                    <exon start="36929" stop="36840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKGEENLCVVDEKDTASDTVVENWKENLGAIVDKATISEVLMETGSEKRDETATAVSCNASAISSGNTLESTDAKAFAIVENEEKIEAPHSAPKIDASVSADVKESPARECHGHQFTALPSRPVQTTSWKSCCGLFELFAGSNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48943" PGL_stop="60077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48943" e_stop="49082"/>
            <exon e_start="54840" e_stop="54962"/>
            <exon e_start="56590" e_stop="56655"/>
            <exon e_start="56994" e_stop="57143"/>
            <exon e_start="58064" e_stop="58165"/>
            <exon e_start="58283" e_stop="58480"/>
            <exon e_start="58584" e_stop="58646"/>
            <exon e_start="58734" e_stop="58838"/>
            <exon e_start="59054" e_stop="59128"/>
            <exon e_start="59711" e_stop="60077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="0.993"/>
          <exon-intron don_prob="0.312" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.980"/>
          <exon-intron don_prob="0.781" acc_prob="0.885" e_score="0.990"/>
          <exon-intron don_prob="0.982" acc_prob="0.870" e_score="0.990"/>
          <exon-intron don_prob="0.984" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.993" acc_prob="0.995" e_score="0.945"/>
          <exon-intron don_prob="0.926" acc_prob="0.999" e_score="0.987"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="48943" e_stop="49082" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="49083" i_stop="54839" i_length="5757"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54840" e_stop="54962" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.312" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54963" i_stop="56589" i_length="1627"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56590" e_stop="56655" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="56656" i_stop="56993" i_length="338"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="56994" e_stop="57143" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57144" i_stop="58063" i_length="920"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="58064" e_stop="58165" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.781" acc_prob="0.885">
            <gDNA_intron_boundary i_start="58166" i_stop="58282" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="58283" e_stop="58480" e_length="198"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.870">
            <gDNA_intron_boundary i_start="58481" i_stop="58583" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="58584" e_stop="58646" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.984" acc_prob="0.983">
            <gDNA_intron_boundary i_start="58647" i_stop="58733" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.945">
            <gDNA_exon_boundary e_start="58734" e_stop="58838" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58839" i_stop="59053" i_length="215"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="59054" e_stop="59128" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59129" i_stop="59710" i_length="582"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="59711" e_stop="60077" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48943" stop="49082"/>
              <exon start="54840" stop="54962"/>
              <exon start="56590" stop="56655"/>
              <exon start="56994" stop="57143"/>
              <exon start="58064" stop="58165"/>
              <exon start="58283" stop="58480"/>
              <exon start="58584" stop="58646"/>
              <exon start="58734" stop="58830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58766" stop="58838"/>
              <exon start="59054" stop="59128"/>
              <exon start="59711" stop="60077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAGCAGTAGCCTTTGTTCAGATCAGATAAGAAAATCAAATCCCAAAAATCGTGAAATCCAGCGGCAAAGATTACAGCCATGGATGCTTTGAGAAAGCAAGCTAGTAAGCTCAGAGAACAAGTCGCTAAACAGCAACAG : GCAGTCATCAAGCAGTTTAGTGCAACTGGTTATGAAAGTTCAGATGTTATGGTCATCGATGAAATGGAAATGCAATTGCATCATCAACTGGACAAGTTGTATAAGTCTACCCGGGAGAAAAGG : GATTTTCAGAAAGAGATTGTTAAGGCAGCTGAAACATTTACAGCTATAGGATACAAGCATATAGAA : CCAGGAACTAAATTATCAGAAGATTGCTGCAAATATGGAGTTGAAAATCCCAATGACGAGGTGTTAGCTAAGGCTGCTTCTATTTACGGCGATGCTCGTAAGCATGCAGAGAAGGAGGTTGAAGATCTAAATAAACTATTCTTCAGTCAG : GTACTGGAACCATTGAGAGCTATGGTAGCTGGTTCTCCCTTAGAGGATGCTCGTCATCTAGCTCAGCGCTACAGTAAAATGCGGCAAGAGGCGGAGATACAG : GCAACCGAAGTTTCTAGAAGACAAGCTCGGGTGAGGGAAGCTCCCATCCCGGAGAATGTGGCAAAGCTGCACTCAGCAGAAACTAAAATGCAGGAACTCAAAGCCAACATGACAGTACTCGGTAAAGAAGCAGCAGCAGCATTAGCTGCTGTAGAATCACAGCAGGAGAGGCTTACATTTCAGAGGCTTGTTGCAATG : GTTGAAGCAGAAAAGCTTTATCATGAGAGAGTTGCTGTTATTCTGGGTAATATTGAAGCTGAG : ATAGTTTCTGAAAAGCAGCGAAAAGAGGCTGCTCCTCCTGTAGCCACACTTCCTGTTAACCCTCCGGCCCAAATACCTGAGAAAACAAAATACTTTTTGGCCGAG : GCTATTCATTCTTTTGAAGCTGAATCAGAAAAGGAGCTAAGCTTGTCTGTCGGTGATTATGTTGTTGTTCGTAAG : GTGACTCAATCAGGTTGGTCAGAAGGAGAATGCCAAGGCAGGGCAGGTTGGTTTCCATCTGAGTACGTGGAGAAACGACAAAGAGTACCTACTTCTAATGGAGCAACGGAAGCTTACTGAAAAGATGGTGATTTTTTGTTGCTGGTATTTGTGGAACAGTTGCCAGTTCATCCATTTATTCATGCAAGAGCATAGAGTTGAGTGTGTAACATATTCATTTTAGTTCTTTTAGGGTTATTCTGGACAGTAAATGCTTTTGGTCTTTTCCCTTTCCCTTTTGTTTTTACCCCAGCATAGACTTGTCATCACTGATGGATTATAGCTGAAATGCACTTAGTTAAGTACCCTCTTCCTCTACCTGCGAACG</gDNA_template>
            <first_frame> S  S  S  S  L  C  S  D  Q  I  R  K  S  N  P  K  N  R  E  I  Q  R  Q  R  L  Q  P  W  M  L  *  E  S  K  L  V  S  S  E  N  K  S  L  N  S  N  R :   Q  S  S  S  S  L  V  Q  L  V  M  K  V  Q  M  L  W  S  S  M  K  W  K  C  N  C  I  I  N  W  T  S  C  I  S  L  P  G  R  K  G :   I  F  R  K  R  L  L  R  Q  L  K  H  L  Q  L  *  D  T  S  I  *  N :   Q  E  L  N  Y  Q  K  I  A  A  N  M  E  L  K  I  P  M  T  R  C  *  L  R  L  L  L  F  T  A  M  L  V  S  M  Q  R  R  R  L  K  I  *  I  N  Y  S  S  V  R :   Y  W  N  H  *  E  L  W  *  L  V  L  P  *  R  M  L  V  I  *  L  S  A  T  V  K  C  G  K  R  R  R  Y  R :   Q  P  K  F  L  E  D  K  L  G  *  G  K  L  P  S  R  R  M  W  Q  S  C  T  Q  Q  K  L  K  C  R  N  S  K  P  T  *  Q  Y  S  V  K  K  Q  Q  Q  H  *  L  L  *  N  H  S  R  R  G  L  H  F  R  G  L  L  Q  W :   L  K  Q  K  S  F  I  M  R  E  L  L  L  F  W  V  I  L  K  L  R :   *  F  L  K  S  S  E  K  R  L  L  L  L  *  P  H  F  L  L  T  L  R  P  K  Y  L  R  K  Q  N  T  F  W  P  R :   L  F  I  L  L  K  L  N  Q  K  R  S  *  A  C  L  S  V  I  M  L  L  F  V  R :   *  L  N  Q  V  G  Q  K  E  N  A  K  A  G  Q  V  G  F  H  L  S  T  W  R  N  D  K  E  Y  L  L  L  M  E  Q  R  K  L  T  E  K  M  V  I  F  C  C  W  Y  L  W  N  S  C  Q  F  I  H  L  F  M  Q  E  H  R  V  E  C  V  T  Y  S  F  *  F  F  *  G  Y  S  G  Q  *  M  L  L  V  F  S  L  S  L  L  F  L  P  Q  H  R  L  V  I  T  D  G  L  *  L  K  C  T  *  L  S  T  L  F  L  Y  L  R  T </first_frame>
            <second_frame>  A  A  V  A  F  V  Q  I  R  *  E  N  Q  I  P  K  I  V  K  S  S  G  K  D  Y  S  H  G  C  F  E  K  A  S  *  *  A  Q  R  T  S  R  *  T  A  T   : G  S  H  Q  A  V  *  C  N  W  L  *  K  F  R  C  Y  G  H  R  *  N  G  N  A  I  A  S  S  T  G  Q  V  V  *  V  Y  P  G  E  K   : G  F  S  E  R  D  C  *  G  S  *  N  I  Y  S  Y  R  I  Q  A  Y  R   : T  R  N  *  I  I  R  R  L  L  Q  I  W  S  *  K  S  Q  *  R  G  V  S  *  G  C  F  Y  L  R  R  C  S  *  A  C  R  E  G  G  *  R  S  K  *  T  I  L  Q  S   : G  T  G  T  I  E  S  Y  G  S  W  F  S  L  R  G  C  S  S  S  S  S  A  L  Q  *  N  A  A  R  G  G  D  T   : G  N  R  S  F  *  K  T  S  S  G  E  G  S  S  H  P  G  E  C  G  K  A  A  L  S  R  N  *  N  A  G  T  Q  S  Q  H  D  S  T  R  *  R  S  S  S  S  I  S  C  C  R  I  T  A  G  E  A  Y  I  S  E  A  C  C  N   : G  *  S  R  K  A  L  S  *  E  S  C  C  Y  S  G  *  Y  *  S  *   : D  S  F  *  K  A  A  K  R  G  C  S  S  C  S  H  T  S  C  *  P  S  G  P  N  T  *  E  N  K  I  L  F  G  R   : G  Y  S  F  F  *  S  *  I  R  K  G  A  K  L  V  C  R  *  L  C  C  C  S  *   : G  D  S  I  R  L  V  R  R  R  M  P  R  Q  G  R  L  V  S  I  *  V  R  G  E  T  T  K  S  T  Y  F  *  W  S  N  G  S  L  L  K  R  W  *  F  F  V  A  G  I  C  G  T  V  A  S  S  S  I  Y  S  C  K  S  I  E  L  S  V  *  H  I  H  F  S  S  F  R  V  I  L  D  S  K  C  F  W  S  F  P  F  P  F  C  F  Y  P  S  I  D  L  S  S  L  M  D  Y  S  *  N  A  L  S  *  V  P  S  S  S  T  C  E   </second_frame>
            <third_frame>   Q  Q  *  P  L  F  R  S  D  K  K  I  K  S  Q  K  S  *  N  P  A  A  K  I  T  A  M  D  A  L  R  K  Q  A  S  K  L  R  E  Q  V  A  K  Q  Q  Q  :  A  V  I  K  Q  F  S  A  T  G  Y  E  S  S  D  V  M  V  I  D  E  M  E  M  Q  L  H  H  Q  L  D  K  L  Y  K  S  T  R  E  K  R  :  D  F  Q  K  E  I  V  K  A  A  E  T  F  T  A  I  G  Y  K  H  I  E  :  P  G  T  K  L  S  E  D  C  C  K  Y  G  V  E  N  P  N  D  E  V  L  A  K  A  A  S  I  Y  G  D  A  R  K  H  A  E  K  E  V  E  D  L  N  K  L  F  F  S  Q  :  V  L  E  P  L  R  A  M  V  A  G  S  P  L  E  D  A  R  H  L  A  Q  R  Y  S  K  M  R  Q  E  A  E  I  Q  :  A  T  E  V  S  R  R  Q  A  R  V  R  E  A  P  I  P  E  N  V  A  K  L  H  S  A  E  T  K  M  Q  E  L  K  A  N  M  T  V  L  G  K  E  A  A  A  A  L  A  A  V  E  S  Q  Q  E  R  L  T  F  Q  R  L  V  A  M  :  V  E  A  E  K  L  Y  H  E  R  V  A  V  I  L  G  N  I  E  A  E  :  I  V  S  E  K  Q  R  K  E  A  A  P  P  V  A  T  L  P  V  N  P  P  A  Q  I  P  E  K  T  K  Y  F  L  A  E  :  A  I  H  S  F  E  A  E  S  E  K  E  L  S  L  S  V  G  D  Y  V  V  V  R  K  :  V  T  Q  S  G  W  S  E  G  E  C  Q  G  R  A  G  W  F  P  S  E  Y  V  E  K  R  Q  R  V  P  T  S  N  G  A  T  E  A  Y  *  K  D  G  D  F  L  L  L  V  F  V  E  Q  L  P  V  H  P  F  I  H  A  R  A  *  S  *  V  C  N  I  F  I  L  V  L  L  G  L  F  W  T  V  N  A  F  G  L  F  P  F  P  F  V  F  T  P  A  *  T  C  H  H  *  W  I  I  A  E  M  H  L  V  K  Y  P  L  P  L  P  A  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48999" stop="49082"/>
                    <exon start="54840" stop="54962"/>
                    <exon start="56590" stop="56655"/>
                    <exon start="56994" stop="57143"/>
                    <exon start="58064" stop="58165"/>
                    <exon start="58283" stop="58480"/>
                    <exon start="58584" stop="58646"/>
                    <exon start="58734" stop="58838"/>
                    <exon start="59054" stop="59128"/>
                    <exon start="59711" stop="59830"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPAAKITAMDALRKQASKLREQVAKQQQAVIKQFSATGYESSDVMVIDEMEMQLHHQLDKLYKSTREKRDFQKEIVKAAETFTAIGYKHIEPGTKLSEDCCKYGVENPNDEVLAKAASIYGDARKHAEKEVEDLNKLFFSQVLEPLRAMVAGSPLEDARHLAQRYSKMRQEAEIQATEVSRRQARVREAPIPENVAKLHSAETKMQELKANMTVLGKEAAAALAAVESQQERLTFQRLVAMVEAEKLYHERVAVILGNIEAEIVSEKQRKEAAPPVATLPVNPPAQIPEKTKYFLAEAIHSFEAESEKELSLSVGDYVVVRKVTQSGWSEGECQGRAGWFPSEYVEKRQRVPTSNGATEAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51256" PGL_stop="50647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51256" e_stop="50647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="51256" e_stop="50647" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51256" stop="50647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACAAGGCTCGACTTGTAGCTAAAGGTTATAGCCAACAAGAGGGGTTAGATTACACTGAGACCTTCTCTCCAGTTGCTAAGATGGTCACTGTCAGGTCAGTTGTGGCTGTGGCAGCAGCTAAACATTGGTCTATTTTTCAGATGGATGTTCATAATGCTTTTCTTCAAGGGGATTTAGTGGAGGAAGTGTATTTGGAGGTTCCCTCTGGTTTTGCTAGCCAGGAGGGGAAGCATGTTGTCTTCAATTACATAAGTCTCTCTATGGACTCAAACAGGCACCTAGGCAATGGAACAAGAAACTCACTGATGCATTGATACAACTTGGCTTCTCACAAAGTCATTTTGACTATTCCTTATTCACCAAGACAGTTCAAGGAGAGTTGGTAGTTGTGTTGGTTTATGTGGATGATTTGCTGGTGACAGGAAGCAGTACAGATCTGATTCTACAAACAAGGAATGACTTAAAGCTAAAGTTCAAAATGAAAGATCTTGGAGAATTGAAGTTCTTCCTTGGAATTGAATTTGTGAGATCACAAAAGGGAATAGTGATGAGCCAAAGGAAGTATGCATTAGAACTAATTAGTGAGTTGGGATTGAGTGGCACTAAAC</gDNA_template>
            <first_frame> V  Q  G  S  T  C  S  *  R  L  *  P  T  R  G  V  R  L  H  *  D  L  L  S  S  C  *  D  G  H  C  Q  V  S  C  G  C  G  S  S  *  T  L  V  Y  F  S  D  G  C  S  *  C  F  S  S  R  G  F  S  G  G  S  V  F  G  G  S  L  W  F  C  *  P  G  G  E  A  C  C  L  Q  L  H  K  S  L  Y  G  L  K  Q  A  P  R  Q  W  N  K  K  L  T  D  A  L  I  Q  L  G  F  S  Q  S  H  F  D  Y  S  L  F  T  K  T  V  Q  G  E  L  V  V  V  L  V  Y  V  D  D  L  L  V  T  G  S  S  T  D  L  I  L  Q  T  R  N  D  L  K  L  K  F  K  M  K  D  L  G  E  L  K  F  F  L  G  I  E  F  V  R  S  Q  K  G  I  V  M  S  Q  R  K  Y  A  L  E  L  I  S  E  L  G  L  S  G  T  K  </first_frame>
            <second_frame>  Y  K  A  R  L  V  A  K  G  Y  S  Q  Q  E  G  L  D  Y  T  E  T  F  S  P  V  A  K  M  V  T  V  R  S  V  V  A  V  A  A  A  K  H  W  S  I  F  Q  M  D  V  H  N  A  F  L  Q  G  D  L  V  E  E  V  Y  L  E  V  P  S  G  F  A  S  Q  E  G  K  H  V  V  F  N  Y  I  S  L  S  M  D  S  N  R  H  L  G  N  G  T  R  N  S  L  M  H  *  Y  N  L  A  S  H  K  V  I  L  T  I  P  Y  S  P  R  Q  F  K  E  S  W  *  L  C  W  F  M  W  M  I  C  W  *  Q  E  A  V  Q  I  *  F  Y  K  Q  G  M  T  *  S  *  S  S  K  *  K  I  L  E  N  *  S  S  S  L  E  L  N  L  *  D  H  K  R  E  *  *  *  A  K  G  S  M  H  *  N  *  L  V  S  W  D  *  V  A  L  N </second_frame>
            <third_frame>   T  R  L  D  L  *  L  K  V  I  A  N  K  R  G  *  I  T  L  R  P  S  L  Q  L  L  R  W  S  L  S  G  Q  L  W  L  W  Q  Q  L  N  I  G  L  F  F  R  W  M  F  I  M  L  F  F  K  G  I  *  W  R  K  C  I  W  R  F  P  L  V  L  L  A  R  R  G  S  M  L  S  S  I  T  *  V  S  L  W  T  Q  T  G  T  *  A  M  E  Q  E  T  H  *  C  I  D  T  T  W  L  L  T  K  S  F  *  L  F  L  I  H  Q  D  S  S  R  R  V  G  S  C  V  G  L  C  G  *  F  A  G  D  R  K  Q  Y  R  S  D  S  T  N  K  E  *  L  K  A  K  V  Q  N  E  R  S  W  R  I  E  V  L  P  W  N  *  I  C  E  I  T  K  G  N  S  D  E  P  K  E  V  C  I  R  T  N  *  *  V  G  I  E  W  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51037" stop="50648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGGEACCLQLHKSLYGLKQAPRQWNKKLTDALIQLGFSQSHFDYSLFTKTVQGELVVVLVYVDDLLVTGSSTDLILQTRNDLKLKFKMKDLGELKFFLGIEFVRSQKGIVMSQRKYALELISELGLSGTK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51255" stop="50941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKARLVAKGYSQQEGLDYTETFSPVAKMVTVRSVVAVAAAKHWSIFQMDVHNAFLQGDLVEEVYLEVPSGFASQEGKHVVFNYISLSMDSNRHLGNGTRNSLMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="80607" PGL_stop="79489"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80607" e_stop="80538"/>
            <exon e_start="79835" e_stop="79489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.914"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="80607" e_stop="80538" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80537" i_stop="79836" i_length="702"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="79835" e_stop="79489" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80607" stop="80538"/>
              <exon start="79835" stop="79489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGGAATGTGGATTCCTATTAGTCCTCTTCCTGATGCCTTCATTATCAACATTGGTGATATCATGGAG : ATAGTGACAAATGGAGCCTACCGTAGCATTGAGCACAGAGCAGTGGTTAACAGCGAAAAGGAAAGACTCTCAATTGCAACATTTTACAGCACAAAACTTGATGGACAAATTGGTCCTGCTCCGAGTATCATTTCTTCTGAAAATCCAGCAAAGTTCAGAAATATTGGAGCTATAGATTATTTCAAAGGTTTATTTGCTCGTAAACTTGATAAGAAATCATACTTAGATGTTATGAGAATTGGAGGTTCTCAGAATCCAGCAAGTTGAAACGGACAGTATTGGACCTATGTGTTCTCTAGTAATTGTGACACTATGTACCAATCTTTATTCAGAAGTTGTGTTTCATC</gDNA_template>
            <first_frame> R  W  N  V  D  S  Y  *  S  S  S  *  C  L  H  Y  Q  H  W  *  Y  H  G   : D  S  D  K  W  S  L  P  *  H  *  A  Q  S  S  G  *  Q  R  K  G  K  T  L  N  C  N  I  L  Q  H  K  T  *  W  T  N  W  S  C  S  E  Y  H  F  F  *  K  S  S  K  V  Q  K  Y  W  S  Y  R  L  F  Q  R  F  I  C  S  *  T  *  *  E  I  I  L  R  C  Y  E  N  W  R  F  S  E  S  S  K  L  K  R  T  V  L  D  L  C  V  L  *  *  L  *  H  Y  V  P  I  F  I  Q  K  L  C  F  I </first_frame>
            <second_frame>  D  G  M  W  I  P  I  S  P  L  P  D  A  F  I  I  N  I  G  D  I  M  E  :  I  V  T  N  G  A  Y  R  S  I  E  H  R  A  V  V  N  S  E  K  E  R  L  S  I  A  T  F  Y  S  T  K  L  D  G  Q  I  G  P  A  P  S  I  I  S  S  E  N  P  A  K  F  R  N  I  G  A  I  D  Y  F  K  G  L  F  A  R  K  L  D  K  K  S  Y  L  D  V  M  R  I  G  G  S  Q  N  P  A  S  *  N  G  Q  Y  W  T  Y  V  F  S  S  N  C  D  T  M  Y  Q  S  L  F  R  S  C  V  S   </second_frame>
            <third_frame>   M  E  C  G  F  L  L  V  L  F  L  M  P  S  L  S  T  L  V  I  S  W  R :   *  *  Q  M  E  P  T  V  A  L  S  T  E  Q  W  L  T  A  K  R  K  D  S  Q  L  Q  H  F  T  A  Q  N  L  M  D  K  L  V  L  L  R  V  S  F  L  L  K  I  Q  Q  S  S  E  I  L  E  L  *  I  I  S  K  V  Y  L  L  V  N  L  I  R  N  H  T  *  M  L  *  E  L  E  V  L  R  I  Q  Q  V  E  T  D  S  I  G  P  M  C  S  L  V  I  V  T  L  C  T  N  L  Y  S  E  V  V  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80606" stop="80538"/>
                    <exon start="79835" stop="79569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGMWIPISPLPDAFIINIGDIMEIVTNGAYRSIEHRAVVNSEKERLSIATFYSTKLDGQIGPAPSIISSENPAKFRNIGAIDYFKGLFARKLDKKSYLDVMRIGGSQNPAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="82934" PGL_stop="80676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82934" e_stop="82655"/>
            <exon e_start="81740" e_stop="81493"/>
            <exon e_start="80862" e_stop="80676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82934" e_stop="82655" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82654" i_stop="81741" i_length="914"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81740" e_stop="81493" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81492" i_stop="80863" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="80862" e_stop="80676" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82934" stop="82655"/>
              <exon start="81740" stop="81493"/>
              <exon start="80862" stop="80676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGTCAATGGTTATATTATGGTAAATATGGAAGAAAATAAATTGGTTAAGCTAGGGGGATCTTTGCCAGTACCAAGTGTTCAACAATTGACCAAAAGCTCACCGGAAAATGTCCCGGCGCGTTACCGGAGAGATGATGATCAACTACTTCTTGTTCCTCCGATGATGAAATTTGATCATTATAATATCCCAATCATCAACATGGAAAGCTTGCTTCGTGGCGATGAAATCGAATTCAACAAGCTTGATTCTGCTTGTAGAGAATGGGGATTTTTTCAG : GTGATAAATCATGGAGTGAGTGGTACACTAGTAGAGAAAGTGAAGAAGGATACTCAAGATTTCTTCAATCTCCCACTAGAAGAAAAGGAAATGTTGAAGCAAGTAGATGGTGATATAGATGGCTATGGACAAGCTTTTGTTGTTTCTGAGGACCAAAAACTTGATTGGGCTGATATGTTTTTCTTGACAACCCTCCCTCCTCAATTCAGAAAAAAACATATCTTCCCCCACCTCCCTCAACCATTCAG : AGGAACAGTGGAACTATATGCAGTTGAACTGAAAAAACTGGCTTTAAAGATCATTGATTTTCTAGCAAAAGGATTGAACATGGATAAAGAATACATAAGGGAACTTTTTGGAGAAGGATCGCAATCAATGAGGATGAATTACTATCCACCATGTCCACAACCAGACAAAGTGATTGGACTTACTCCT</gDNA_template>
            <first_frame> I  R  Q  W  L  Y  Y  G  K  Y  G  R  K  *  I  G  *  A  R  G  I  F  A  S  T  K  C  S  T  I  D  Q  K  L  T  G  K  C  P  G  A  L  P  E  R  *  *  S  T  T  S  C  S  S  D  D  E  I  *  S  L  *  Y  P  N  H  Q  H  G  K  L  A  S  W  R  *  N  R  I  Q  Q  A  *  F  C  L  *  R  M  G  I  F  S   : G  D  K  S  W  S  E  W  Y  T  S  R  E  S  E  E  G  Y  S  R  F  L  Q  S  P  T  R  R  K  G  N  V  E  A  S  R  W  *  Y  R  W  L  W  T  S  F  C  C  F  *  G  P  K  T  *  L  G  *  Y  V  F  L  D  N  P  P  S  S  I  Q  K  K  T  Y  L  P  P  P  P  S  T  I  Q  :  R  N  S  G  T  I  C  S  *  T  E  K  T  G  F  K  D  H  *  F  S  S  K  R  I  E  H  G  *  R  I  H  K  G  T  F  W  R  R  I  A  I  N  E  D  E  L  L  S  T  M  S  T  T  R  Q  S  D  W  T  Y  S  </first_frame>
            <second_frame>  F  V  N  G  Y  I  M  V  N  M  E  E  N  K  L  V  K  L  G  G  S  L  P  V  P  S  V  Q  Q  L  T  K  S  S  P  E  N  V  P  A  R  Y  R  R  D  D  D  Q  L  L  L  V  P  P  M  M  K  F  D  H  Y  N  I  P  I  I  N  M  E  S  L  L  R  G  D  E  I  E  F  N  K  L  D  S  A  C  R  E  W  G  F  F  Q  :  V  I  N  H  G  V  S  G  T  L  V  E  K  V  K  K  D  T  Q  D  F  F  N  L  P  L  E  E  K  E  M  L  K  Q  V  D  G  D  I  D  G  Y  G  Q  A  F  V  V  S  E  D  Q  K  L  D  W  A  D  M  F  F  L  T  T  L  P  P  Q  F  R  K  K  H  I  F  P  H  L  P  Q  P  F  R :   G  T  V  E  L  Y  A  V  E  L  K  K  L  A  L  K  I  I  D  F  L  A  K  G  L  N  M  D  K  E  Y  I  R  E  L  F  G  E  G  S  Q  S  M  R  M  N  Y  Y  P  P  C  P  Q  P  D  K  V  I  G  L  T  P </second_frame>
            <third_frame>   S  S  M  V  I  L  W  *  I  W  K  K  I  N  W  L  S  *  G  D  L  C  Q  Y  Q  V  F  N  N  *  P  K  A  H  R  K  M  S  R  R  V  T  G  E  M  M  I  N  Y  F  L  F  L  R  *  *  N  L  I  I  I  I  S  Q  S  S  T  W  K  A  C  F  V  A  M  K  S  N  S  T  S  L  I  L  L  V  E  N  G  D  F  F  R :   *  *  I  M  E  *  V  V  H  *  *  R  K  *  R  R  I  L  K  I  S  S  I  S  H  *  K  K  R  K  C  *  S  K  *  M  V  I  *  M  A  M  D  K  L  L  L  F  L  R  T  K  N  L  I  G  L  I  C  F  S  *  Q  P  S  L  L  N  S  E  K  N  I  S  S  P  T  S  L  N  H  S   : E  E  Q  W  N  Y  M  Q  L  N  *  K  N  W  L  *  R  S  L  I  F  *  Q  K  D  *  T  W  I  K  N  T  *  G  N  F  L  E  K  D  R  N  Q  *  G  *  I  T  I  H  H  V  H  N  Q  T  K  *  L  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82933" stop="82655"/>
                    <exon start="81740" stop="81493"/>
                    <exon start="80862" stop="80676"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVNGYIMVNMEENKLVKLGGSLPVPSVQQLTKSSPENVPARYRRDDDQLLLVPPMMKFDHYNIPIINMESLLRGDEIEFNKLDSACREWGFFQVINHGVSGTLVEKVKKDTQDFFNLPLEEKEMLKQVDGDIDGYGQAFVVSEDQKLDWADMFFLTTLPPQFRKKHIFPHLPQPFRGTVELYAVELKKLALKIIDFLAKGLNMDKEYIRELFGEGSQSMRMNYYPPCPQPDKVIGLTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="99162" PGL_stop="94252"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99162" e_stop="98892"/>
            <exon e_start="97001" e_stop="96351"/>
            <exon e_start="94676" e_stop="94528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.589" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99162" e_stop="98892" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.589">
            <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97001" e_stop="96351" e_length="651"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94676" e_stop="94528" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99162" stop="98892"/>
              <exon start="97001" stop="96351"/>
              <exon start="94676" stop="94528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG : TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAGGTACATACCAAACGTTGTTTGCGCCCTTTTTAACGCTTGAAAATAAGTAAGAGAATCGCTTATTAATGCGTATAAATGTAGAGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG : ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACC</gDNA_template>
            <first_frame> H  H  R  I  K  Q  L  N  K  Y  E  R  H  R  S  Q  V  H  G  S  S  F  C  T  G  T  G  Q  E  E  T  R  V  D  S  I  A  I  R  T  R  *  S  R  P  F  N  C  I  I  N  L  *  R  S  P  S  N  *  Y  A  T  I  D  Q  L  *  *  S  *  L  H  E  S  *  A  *  Q  V  A  L  S  S  *  R  L  G  F  L  S   : V  D  *  S  W  S  *  L  F  S  S  G  E  D  E  R  R  D  S  K  I  L  R  S  A  I  R  R  E  E  K  V  *  K  I  F  R  R  Y  R  W  I  W  T  A  I  R  R  L  *  *  T  K  A  *  L  G  *  S  L  L  L  E  D  F  T  H  I  F  A  K  A  C  V  F  Q  A  L  P  F  T  *  V  H  T  K  R  C  L  R  P  F  *  R  L  K  I  S  K  R  I  A  Y  *  C  V  *  M  *  R  D  D  *  R  V  R  G  *  N  K  E  A  K  H  E  S  I  G  N  V  G  *  S  F  G  D  *  *  R  *  S  E  E  C  F  Q  R  R  N  A  I  D  E  D  E  L  L  S  T  M  S  T  T  R  E  S  D  G  T  Y  S  S  F  R  C  N  R  P  Y  N  T  S  S  S  *  *  N  S  R  S  S  N  *  K  R  W  N  L  D  P  H  *  T  T  P  *  C  L  H  S  Q  C  W  R  C  F  *   : D  F  L  K  W  N  I  Q  K  H  R  T  *  I  S  G  E  L  R  K  R  K  D  F  S  S  N  I  S  E  S  K  I  G  W  Y  I  R  S  I  K  *  P  C  Y  T  S  K  S  T </first_frame>
            <second_frame>  T  I  E  L  S  S  *  T  N  M  R  D  I  E  V  K  Y  M  E  V  P  S  V  Q  E  L  A  K  K  K  L  V  S  I  P  S  R  Y  V  R  D  D  Q  D  R  S  I  A  S  S  I  Y  K  E  V  P  V  I  D  M  Q  R  L  I  N  F  N  D  H  D  S  M  N  L  E  L  N  K  L  H  L  A  A  K  D  W  G  F  F  Q  :  L  I  N  H  G  V  S  C  S  V  V  E  K  M  K  D  E  T  Q  K  F  F  D  L  P  L  E  E  K  K  K  F  E  K  S  S  G  D  T  D  G  F  G  Q  L  F  V  V  S  D  E  Q  K  L  D  W  A  D  L  F  Y  L  K  T  S  P  T  Y  L  R  K  P  V  F  S  K  L  Y  L  S  L  R  Y  I  P  N  V  V  C  A  L  F  N  A  *  K  *  V  R  E  S  L  I  N  A  Y  K  C  R  E  T  I  E  E  Y  A  D  E  I  K  K  L  S  M  R  V  L  E  T  L  G  K  A  L  G  I  D  E  D  E  V  K  S  V  F  K  E  G  M  Q  S  M  R  M  N  Y  Y  P  P  C  P  Q  P  E  K  V  M  G  L  T  P  H  S  D  A  T  G  L  T  I  L  L  Q  V  N  E  T  Q  G  L  Q  I  K  K  D  G  I  W  I  P  I  E  P  L  P  N  A  F  I  V  N  V  G  D  A  F  E  :  I  F  S  N  G  I  Y  K  S  I  E  H  R  S  V  V  S  S  E  K  E  R  I  S  V  A  T  F  Q  S  P  R  L  D  G  I  L  G  P  S  S  S  L  V  T  P  Q  N  P   </second_frame>
            <third_frame>   P  *  N  *  A  V  K  Q  I  *  E  T  *  K  S  S  T  W  K  F  L  L  Y  R  N  W  P  R  R  N  S  C  R  F  H  R  D  T  Y  A  M  I  K  T  V  Q  L  H  H  Q  F  I  K  K  S  Q  *  L  I  C  N  D  *  S  T  L  M  I  M  T  P  *  I  L  S  L  T  S  C  T  *  Q  L  K  I  G  V  S  F  S :   *  L  I  M  E  L  V  V  Q  *  W  R  R  *  K  T  R  L  K  N  S  S  I  C  H  *  K  R  R  K  S  L  K  N  L  Q  E  I  Q  M  D  L  D  S  Y  S  S  S  L  M  N  K  S  L  T  G  L  I  S  F  T  *  R  L  H  P  H  I  C  E  S  L  C  F  P  S  F  T  F  H  L  G  T  Y  Q  T  L  F  A  P  F  L  T  L  E  N  K  *  E  N  R  L  L  M  R  I  N  V  E  R  R  L  K  S  T  R  M  K  *  R  S  *  A  *  E  Y  W  K  R  W  V  K  L  W  G  L  M  K  M  K  *  R  V  F  S  K  K  E  C  N  R  *  G  *  I  T  I  H  H  V  H  N  Q  R  K  *  W  D  L  L  L  I  Q  M  Q  Q  A  L  Q  Y  F  F  K  L  M  K  L  K  V  F  K  L  K  K  M  E  F  G  S  P  L  N  H  S  L  M  P  S  *  S  M  L  E  M  L  L  R :   F  S  Q  M  E  Y  T  K  A  *  N  I  D  Q  W  *  A  Q  K  K  K  G  F  Q  *  Q  H  F  R  V  Q  D  W  M  V  Y  *  V  H  Q  V  A  L  L  H  L  K  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99140" stop="98892"/>
                    <exon start="97001" stop="96717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNMRDIEVKYMEVPSVQELAKKKLVSIPSRYVRDDQDRSIASSIYKEVPVIDMQRLINFNDHDSMNLELNKLHLAAKDWGFFQLINHGVSCSVVEKMKDETQKFFDLPLEEKKKFEKSSGDTDGFGQLFVVSDEQKLDWADLFYLKTSPTYLRKPVFSKLYLSLRYIPNVVCALFNA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96710" stop="96351"/>
                    <exon start="94676" stop="94530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRESLINAYKCRETIEEYADEIKKLSMRVLETLGKALGIDEDEVKSVFKEGMQSMRMNYYPPCPQPEKVMGLTPHSDATGLTILLQVNETQGLQIKKDGIWIPIEPLPNAFIVNVGDAFEIFSNGIYKSIEHRSVVSSEKERISVATFQSPRLDGILGPSSSLVTPQNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99158" e_stop="98892"/>
            <exon e_start="97001" e_stop="96757"/>
            <exon e_start="96675" e_stop="96351"/>
            <exon e_start="94676" e_stop="94252"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.589" e_score="0.996"/>
          <exon-intron don_prob="0.717" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99158" e_stop="98892" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.589">
            <gDNA_intron_boundary i_start="98891" i_stop="97002" i_length="1890"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97001" e_stop="96757" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.717" acc_prob="0.882">
            <gDNA_intron_boundary i_start="96756" i_stop="96676" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96675" e_stop="96351" e_length="325"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96350" i_stop="94677" i_length="1674"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="94676" e_stop="94252" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99158" stop="98892"/>
              <exon start="97001" stop="96757"/>
              <exon start="96675" stop="96351"/>
              <exon start="94676" stop="94252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGAATTAAGCAGTTAAACAAATATGAGAGACATAGAAGTCAAGTACATGGAAGTTCCTTCTGTACAGGAACTGGCCAAGAAGAAACTCGTGTCGATTCCATCGCGATACGTACGCGATGATCAAGACCGTTCAATTGCATCATCAATTTATAAAGAAGTCCCAGTAATTGATATGCAACGATTGATCAACTTTAATGATCATGACTCCATGAATCTTGAGCTTAACAAGTTGCACTTAGCAGCTAAAGATTGGGGTTTCTTTCAG : TTGATTAATCATGGAGTTAGTTGTTCAGTAGTGGAGAAGATGAAAGACGAGACTCAAAAATTCTTCGATCTGCCATTAGAAGAGAAGAAAAAGTTTGAAAAATCTTCAGGAGATACAGATGGATTTGGACAGCTATTCGTCGTCTCTGATGAACAAAAGCTTGACTGGGCTGATCTCTTTTACTTGAAGACTTCACCCACATATTTGCGAAAGCCTGTGTTTTCCAAGCTTTACCTTTCACTTAG : AGAGACGATTGAAGAGTACGCGGATGAAATAAAGAAGCTAAGCATGAGAGTATTGGAAACGTTGGGTAAAGCTTTGGGGATTGATGAAGATGAAGTGAAGAGTGTTTTCAAAGAAGGAATGCAATCGATGAGGATGAATTACTATCCACCATGTCCACAACCAGAGAAAGTGATGGGACTTACTCCTCATTCAGATGCAACAGGCCTTACAATACTTCTTCAAGTTAATGAAACTCAAGGTCTTCAAATTAAAAAAGATGGAATTTGGATCCCCATTGAACCACTCCCTAATGCCTTCATAGTCAATGTTGGAGATGCTTTTGAG : ATTTTCTCAAATGGAATATACAAAAGCATAGAACATAGATCAGTGGTGAGCTCAGAAAAAGAAAGGATTTCAGTAGCAACATTTCAGAGTCCAAGATTGGATGGTATATTAGGTCCATCAAGTAGCCTTGTTACACCTCAAAATCCACCAAAATTCAAAAAAATTGGAGTCACTCAATTTTATAAAGGATTTTTCACACGTGAACTTGATGGGAAATCATATGTGGACACCATGAGAATCACCAATGAAGATGATCTAAACAATTAGTTAGATATCTCGATTTGAGTATATATCTGAATTCTTATAATGCTGTAAGATGTTATATTAAGATGTCAAGACTAAAAATTTATGACTCTTTATATTTTTGAATATGTAAAAAAATTATATGATGATTTTGGATGTCTATTGTATTAAGATTTCAATAC</gDNA_template>
            <first_frame> I  E  L  S  S  *  T  N  M  R  D  I  E  V  K  Y  M  E  V  P  S  V  Q  E  L  A  K  K  K  L  V  S  I  P  S  R  Y  V  R  D  D  Q  D  R  S  I  A  S  S  I  Y  K  E  V  P  V  I  D  M  Q  R  L  I  N  F  N  D  H  D  S  M  N  L  E  L  N  K  L  H  L  A  A  K  D  W  G  F  F  Q  :  L  I  N  H  G  V  S  C  S  V  V  E  K  M  K  D  E  T  Q  K  F  F  D  L  P  L  E  E  K  K  K  F  E  K  S  S  G  D  T  D  G  F  G  Q  L  F  V  V  S  D  E  Q  K  L  D  W  A  D  L  F  Y  L  K  T  S  P  T  Y  L  R  K  P  V  F  S  K  L  Y  L  S  L  R :   E  T  I  E  E  Y  A  D  E  I  K  K  L  S  M  R  V  L  E  T  L  G  K  A  L  G  I  D  E  D  E  V  K  S  V  F  K  E  G  M  Q  S  M  R  M  N  Y  Y  P  P  C  P  Q  P  E  K  V  M  G  L  T  P  H  S  D  A  T  G  L  T  I  L  L  Q  V  N  E  T  Q  G  L  Q  I  K  K  D  G  I  W  I  P  I  E  P  L  P  N  A  F  I  V  N  V  G  D  A  F  E  :  I  F  S  N  G  I  Y  K  S  I  E  H  R  S  V  V  S  S  E  K  E  R  I  S  V  A  T  F  Q  S  P  R  L  D  G  I  L  G  P  S  S  S  L  V  T  P  Q  N  P  P  K  F  K  K  I  G  V  T  Q  F  Y  K  G  F  F  T  R  E  L  D  G  K  S  Y  V  D  T  M  R  I  T  N  E  D  D  L  N  N  *  L  D  I  S  I  *  V  Y  I  *  I  L  I  M  L  *  D  V  I  L  R  C  Q  D  *  K  F  M  T  L  Y  I  F  E  Y  V  K  K  L  Y  D  D  F  G  C  L  L  Y  *  D  F  N   </first_frame>
            <second_frame>  *  N  *  A  V  K  Q  I  *  E  T  *  K  S  S  T  W  K  F  L  L  Y  R  N  W  P  R  R  N  S  C  R  F  H  R  D  T  Y  A  M  I  K  T  V  Q  L  H  H  Q  F  I  K  K  S  Q  *  L  I  C  N  D  *  S  T  L  M  I  M  T  P  *  I  L  S  L  T  S  C  T  *  Q  L  K  I  G  V  S  F  S :   *  L  I  M  E  L  V  V  Q  *  W  R  R  *  K  T  R  L  K  N  S  S  I  C  H  *  K  R  R  K  S  L  K  N  L  Q  E  I  Q  M  D  L  D  S  Y  S  S  S  L  M  N  K  S  L  T  G  L  I  S  F  T  *  R  L  H  P  H  I  C  E  S  L  C  F  P  S  F  T  F  H  L   : E  R  R  L  K  S  T  R  M  K  *  R  S  *  A  *  E  Y  W  K  R  W  V  K  L  W  G  L  M  K  M  K  *  R  V  F  S  K  K  E  C  N  R  *  G  *  I  T  I  H  H  V  H  N  Q  R  K  *  W  D  L  L  L  I  Q  M  Q  Q  A  L  Q  Y  F  F  K  L  M  K  L  K  V  F  K  L  K  K  M  E  F  G  S  P  L  N  H  S  L  M  P  S  *  S  M  L  E  M  L  L  R :   F  S  Q  M  E  Y  T  K  A  *  N  I  D  Q  W  *  A  Q  K  K  K  G  F  Q  *  Q  H  F  R  V  Q  D  W  M  V  Y  *  V  H  Q  V  A  L  L  H  L  K  I  H  Q  N  S  K  K  L  E  S  L  N  F  I  K  D  F  S  H  V  N  L  M  G  N  H  M  W  T  P  *  E  S  P  M  K  M  I  *  T  I  S  *  I  S  R  F  E  Y  I  S  E  F  L  *  C  C  K  M  L  Y  *  D  V  K  T  K  N  L  *  L  F  I  F  L  N  M  *  K  N  Y  M  M  I  L  D  V  Y  C  I  K  I  S  I  </second_frame>
            <third_frame>   R  I  K  Q  L  N  K  Y  E  R  H  R  S  Q  V  H  G  S  S  F  C  T  G  T  G  Q  E  E  T  R  V  D  S  I  A  I  R  T  R  *  S  R  P  F  N  C  I  I  N  L  *  R  S  P  S  N  *  Y  A  T  I  D  Q  L  *  *  S  *  L  H  E  S  *  A  *  Q  V  A  L  S  S  *  R  L  G  F  L  S   : V  D  *  S  W  S  *  L  F  S  S  G  E  D  E  R  R  D  S  K  I  L  R  S  A  I  R  R  E  E  K  V  *  K  I  F  R  R  Y  R  W  I  W  T  A  I  R  R  L  *  *  T  K  A  *  L  G  *  S  L  L  L  E  D  F  T  H  I  F  A  K  A  C  V  F  Q  A  L  P  F  T  *  :  R  D  D  *  R  V  R  G  *  N  K  E  A  K  H  E  S  I  G  N  V  G  *  S  F  G  D  *  *  R  *  S  E  E  C  F  Q  R  R  N  A  I  D  E  D  E  L  L  S  T  M  S  T  T  R  E  S  D  G  T  Y  S  S  F  R  C  N  R  P  Y  N  T  S  S  S  *  *  N  S  R  S  S  N  *  K  R  W  N  L  D  P  H  *  T  T  P  *  C  L  H  S  Q  C  W  R  C  F  *   : D  F  L  K  W  N  I  Q  K  H  R  T  *  I  S  G  E  L  R  K  R  K  D  F  S  S  N  I  S  E  S  K  I  G  W  Y  I  R  S  I  K  *  P  C  Y  T  S  K  S  T  K  I  Q  K  N  W  S  H  S  I  L  *  R  I  F  H  T  *  T  *  W  E  I  I  C  G  H  H  E  N  H  Q  *  R  *  S  K  Q  L  V  R  Y  L  D  L  S  I  Y  L  N  S  Y  N  A  V  R  C  Y  I  K  M  S  R  L  K  I  Y  D  S  L  Y  F  *  I  C  K  K  I  I  *  *  F  W  M  S  I  V  L  R  F  Q  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99140" stop="98892"/>
                    <exon start="97001" stop="96757"/>
                    <exon start="96675" stop="96351"/>
                    <exon start="94676" stop="94410"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1083</number_coding_nucleotides>
                  <number_encoded_amino_acids>361</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNMRDIEVKYMEVPSVQELAKKKLVSIPSRYVRDDQDRSIASSIYKEVPVIDMQRLINFNDHDSMNLELNKLHLAAKDWGFFQLINHGVSCSVVEKMKDETQKFFDLPLEEKKKFEKSSGDTDGFGQLFVVSDEQKLDWADLFYLKTSPTYLRKPVFSKLYLSLRETIEEYADEIKKLSMRVLETLGKALGIDEDEVKSVFKEGMQSMRMNYYPPCPQPEKVMGLTPHSDATGLTILLQVNETQGLQIKKDGIWIPIEPLPNAFIVNVGDAFEIFSNGIYKSIEHRSVVSSEKERISVATFQSPRLDGILGPSSSLVTPQNPPKFKKIGVTQFYKGFFTRELDGKSYVDTMRITNEDDLNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="114481" PGL_stop="111966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114481" e_stop="114127"/>
            <exon e_start="114031" e_stop="113784"/>
            <exon e_start="113726" e_stop="113386"/>
            <exon e_start="113323" e_stop="112897"/>
            <exon e_start="112729" e_stop="112721"/>
            <exon e_start="111994" e_stop="111966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.961"/>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="0.940"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.953"/>
          <exon-intron don_prob="0.000" acc_prob="0.552" e_score="0.878"/>
          <exon-intron don_prob="0.900" acc_prob="0.760" e_score="0.667"/>
          <exon-only e_score="0.655"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="114481" e_stop="114127" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="114126" i_stop="114032" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="114031" e_stop="113784" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="113783" i_stop="113727" i_length="57"/>
          </intron>
          <exon e_serial="3" e_score="0.953">
            <gDNA_exon_boundary e_start="113726" e_stop="113386" e_length="341"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113385" i_stop="113324" i_length="62"/>
          </intron>
          <exon e_serial="4" e_score="0.878">
            <gDNA_exon_boundary e_start="113323" e_stop="112897" e_length="427"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.552">
            <gDNA_intron_boundary i_start="112896" i_stop="112730" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="112729" e_stop="112721" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.760">
            <gDNA_intron_boundary i_start="112720" i_stop="111995" i_length="726"/>
          </intron>
          <exon e_serial="6" e_score="0.655">
            <gDNA_exon_boundary e_start="111994" e_stop="111966" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114481" stop="114127"/>
              <exon start="114031" stop="113784"/>
              <exon start="113726" stop="113386"/>
              <exon start="113323" stop="112897"/>
              <exon start="112729" stop="112721"/>
              <exon start="111994" stop="111966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAAAGTACAATAAAATTTTATCGACTACACACAATAATCTTTCAATCCTAGATAATGATTTTGCTAAAAAAAAAAAAATACAAGTTGATGATGGAAGAAGCGAGGTCGAGAAAGCTAGGTGGCTCTTTGAAAGTTTCTAACGTTCAGGAGCTGGCAAAACAACAACTAGCAGGTGTTCCGTCGCGATATATTCGTGTTAATGATGACGAAAATCAATTGTATAATTCGTCCATATTATTGCCTCATGAATTAGCTCCAGTTATTGACATGAAAAAACTGCTCAAAATAATTAAAGACGGTGATACAGAGCTTAACAGATTTCATCTTGCTTGCAAAGAAGGGGATTTTTCCAG : TTGGTGAATCACGGAGTGAGTTCATCATTGATGGAGAAAGTGAAATCAGAAATCAGAGCATTTTTCGATCTACCAATGGAAGAGAAGACGAAATTCGAGCAAGAAGAGGGAGATCTCGAAGGATACGGGCAAGCATTTGTTGTATCTGAAGAGAAAAAGTTAGATTGGGCTGATATACTTTACATGATCACTCTCCCTACTCATTTGCGAAAACCTCACTTGTTTCCAAAGCTTCCTGCCTCGTTCAG : GGATGCATTGGAACAATACTCAAGAGCACTGAAGGAACTTGCTATGAAAATTCTGTACGTAATGGCCAGAGCTTTAGGGATGAAAACAGAGGATATGAATGTATTATTTGAACAAGACGGGACACAAATGATGAGAATAAATTATTATCCTCCTTGTCCTCAACCAGAGCGCGTAATGGGGTTATGCCCCCATACTGATGCTATTGGTCTAGCTATATTACTTCAGGTTAATGAAACGGAAGGTCTTCAAATTAAGAAAGATGGAGCTTGGATTCCGGTTCCATATCTTCCTGATGCCTTTGTTGTCAACATTGGAGATATTTTAGAGGTGAGATATATGT : ATTGTGACAAATGGAATTTACAAGAGCATTGATCATGGGGATAAGGAGAGGATCTCTATTGCTACATTTTTTAGCCCCAAATTGGACGGAGATTTAGGTCCAGCACCAAGTCTCCTCACTCCTCAAAATATAGGAGGATTGGAGTGGCCGATTACTTCAAAGGATTTTTTTCTCGAGAGCTCCATGGAAAATCATACCTACATACTCTAAAAATTGGAAATGGAGATCATGATAGCAATTGATCAATGTTGCATTTTATTCCGCTCGTATGATAATTATTGTAGCAATGGTGGTCTGTTTAGTTGTATGAGCTATCTCATGTGATGTAAAAGGTTGCAGAAGAACAGTTATTGCTTATATTTATATTTAAAACCATTAAGAAATGCATAAACTTCCAATCCTATATTTGAATTGGGAAAGGGTAAAA : GTAAAAACA : TAATAAAAAAAAGTAGTACAAGAAGAACA</gDNA_template>
            <first_frame> G  K  V  Q  *  N  F  I  D  Y  T  Q  *  S  F  N  P  R  *  *  F  C  *  K  K  K  N  T  S  *  *  W  K  K  R  G  R  E  S  *  V  A  L  *  K  F  L  T  F  R  S  W  Q  N  N  N  *  Q  V  F  R  R  D  I  F  V  L  M  M  T  K  I  N  C  I  I  R  P  Y  Y  C  L  M  N  *  L  Q  L  L  T  *  K  N  C  S  K  *  L  K  T  V  I  Q  S  L  T  D  F  I  L  L  A  K  K  G  I  F  P   : V  G  E  S  R  S  E  F  I  I  D  G  E  S  E  I  R  N  Q  S  I  F  R  S  T  N  G  R  E  D  E  I  R  A  R  R  G  R  S  R  R  I  R  A  S  I  C  C  I  *  R  E  K  V  R  L  G  *  Y  T  L  H  D  H  S  P  Y  S  F  A  K  T  S  L  V  S  K  A  S  C  L  V  Q  :  G  C  I  G  T  I  L  K  S  T  E  G  T  C  Y  E  N  S  V  R  N  G  Q  S  F  R  D  E  N  R  G  Y  E  C  I  I  *  T  R  R  D  T  N  D  E  N  K  L  L  S  S  L  S  S  T  R  A  R  N  G  V  M  P  P  Y  *  C  Y  W  S  S  Y  I  T  S  G  *  *  N  G  R  S  S  N  *  E  R  W  S  L  D  S  G  S  I  S  S  *  C  L  C  C  Q  H  W  R  Y  F  R  G  E  I  Y  V :   L  *  Q  M  E  F  T  R  A  L  I  M  G  I  R  R  G  S  L  L  L  H  F  L  A  P  N  W  T  E  I  *  V  Q  H  Q  V  S  S  L  L  K  I  *  E  D  W  S  G  R  L  L  Q  R  I  F  F  S  R  A  P  W  K  I  I  P  T  Y  S  K  N  W  K  W  R  S  *  *  Q  L  I  N  V  A  F  Y  S  A  R  M  I  I  I  V  A  M  V  V  C  L  V  V  *  A  I  S  C  D  V  K  G  C  R  R  T  V  I  A  Y  I  Y  I  *  N  H  *  E  M  H  K  L  P  I  L  Y  L  N  W  E  R  V  K  :  V  K  T  :  *  *  K  K  V  V  Q  E  E   </first_frame>
            <second_frame>  A  K  Y  N  K  I  L  S  T  T  H  N  N  L  S  I  L  D  N  D  F  A  K  K  K  K  I  Q  V  D  D  G  R  S  E  V  E  K  A  R  W  L  F  E  S  F  *  R  S  G  A  G  K  T  T  T  S  R  C  S  V  A  I  Y  S  C  *  *  *  R  K  S  I  V  *  F  V  H  I  I  A  S  *  I  S  S  S  Y  *  H  E  K  T  A  Q  N  N  *  R  R  *  Y  R  A  *  Q  I  S  S  C  L  Q  R  R  G  F  F  Q  :  L  V  N  H  G  V  S  S  S  L  M  E  K  V  K  S  E  I  R  A  F  F  D  L  P  M  E  E  K  T  K  F  E  Q  E  E  G  D  L  E  G  Y  G  Q  A  F  V  V  S  E  E  K  K  L  D  W  A  D  I  L  Y  M  I  T  L  P  T  H  L  R  K  P  H  L  F  P  K  L  P  A  S  F  R :   D  A  L  E  Q  Y  S  R  A  L  K  E  L  A  M  K  I  L  Y  V  M  A  R  A  L  G  M  K  T  E  D  M  N  V  L  F  E  Q  D  G  T  Q  M  M  R  I  N  Y  Y  P  P  C  P  Q  P  E  R  V  M  G  L  C  P  H  T  D  A  I  G  L  A  I  L  L  Q  V  N  E  T  E  G  L  Q  I  K  K  D  G  A  W  I  P  V  P  Y  L  P  D  A  F  V  V  N  I  G  D  I  L  E  V  R  Y  M   : Y  C  D  K  W  N  L  Q  E  H  *  S  W  G  *  G  E  D  L  Y  C  Y  I  F  *  P  Q  I  G  R  R  F  R  S  S  T  K  S  P  H  S  S  K  Y  R  R  I  G  V  A  D  Y  F  K  G  F  F  S  R  E  L  H  G  K  S  Y  L  H  T  L  K  I  G  N  G  D  H  D  S  N  *  S  M  L  H  F  I  P  L  V  *  *  L  L  *  Q  W  W  S  V  *  L  Y  E  L  S  H  V  M  *  K  V  A  E  E  Q  L  L  L  I  F  I  F  K  T  I  K  K  C  I  N  F  Q  S  Y  I  *  I  G  K  G  *  K :   *  K  H :   N  K  K  K  *  Y  K  K  N  </second_frame>
            <third_frame>   Q  S  T  I  K  F  Y  R  L  H  T  I  I  F  Q  S  *  I  M  I  L  L  K  K  K  K  Y  K  L  M  M  E  E  A  R  S  R  K  L  G  G  S  L  K  V  S  N  V  Q  E  L  A  K  Q  Q  L  A  G  V  P  S  R  Y  I  R  V  N  D  D  E  N  Q  L  Y  N  S  S  I  L  L  P  H  E  L  A  P  V  I  D  M  K  K  L  L  K  I  I  K  D  G  D  T  E  L  N  R  F  H  L  A  C  K  E  G  D  F  S  S :   W  *  I  T  E  *  V  H  H  *  W  R  K  *  N  Q  K  S  E  H  F  S  I  Y  Q  W  K  R  R  R  N  S  S  K  K  R  E  I  S  K  D  T  G  K  H  L  L  Y  L  K  R  K  S  *  I  G  L  I  Y  F  T  *  S  L  S  L  L  I  C  E  N  L  T  C  F  Q  S  F  L  P  R  S   : G  M  H  W  N  N  T  Q  E  H  *  R  N  L  L  *  K  F  C  T  *  W  P  E  L  *  G  *  K  Q  R  I  *  M  Y  Y  L  N  K  T  G  H  K  *  *  E  *  I  I  I  L  L  V  L  N  Q  S  A  *  W  G  Y  A  P  I  L  M  L  L  V  *  L  Y  Y  F  R  L  M  K  R  K  V  F  K  L  R  K  M  E  L  G  F  R  F  H  I  F  L  M  P  L  L  S  T  L  E  I  F  *  R  *  D  I  C  :  I  V  T  N  G  I  Y  K  S  I  D  H  G  D  K  E  R  I  S  I  A  T  F  F  S  P  K  L  D  G  D  L  G  P  A  P  S  L  L  T  P  Q  N  I  G  G  L  E  W  P  I  T  S  K  D  F  F  L  E  S  S  M  E  N  H  T  Y  I  L  *  K  L  E  M  E  I  M  I  A  I  D  Q  C  C  I  L  F  R  S  Y  D  N  Y  C  S  N  G  G  L  F  S  C  M  S  Y  L  M  *  C  K  R  L  Q  K  N  S  Y  C  L  Y  L  Y  L  K  P  L  R  N  A  *  T  S  N  P  I  F  E  L  G  K  G  K   : S  K  N   : I  I  K  K  S  S  T  R  R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114165" stop="114127"/>
                    <exon start="114031" stop="113784"/>
                    <exon start="113726" stop="113386"/>
                    <exon start="113323" stop="113292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISSCLQRRGFFQLVNHGVSSSLMEKVKSEIRAFFDLPMEEKTKFEQEEGDLEGYGQAFVVSEEKKLDWADILYMITLPTHLRKPHLFPKLPASFRDALEQYSRALKELAMKILYVMARALGMKTEDMNVLFEQDGTQMMRINYYPPCPQPERVMGLCPHTDAIGLAILLQVNETEGLQIKKDGAWIPVPYLPDAFVVNIGDILEVRYMYCDKWNLQEH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="116410" PGL_stop="117179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116410" e_stop="117179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="116410" e_stop="117179" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116410" stop="117179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTCCGATGAGGCTGTGTGCAGGTCCTAATTCGGATTCAAGGTTCATGTAATAGAATGTCGCAACAGAGAGCCTTTCTTCATTTGAGTTTACAATTGCTCTGTGCTCAATACTCCTATACACACCATTGCTCAATATCTGCCAAGTTAAATATATCACATTTACGCGCATAATATTTTCAGGCGGTAGTAGAACATTTTTACCTCCATCATGTCTCCAATATTCACAATCAAAGCATTTGGGAGGGGCTTTATGGGCACCCAAATATCATCTTTTCGGACTTGTAGACCTTCAGTTTCGTTCAGCTGGAAAAGGATGGTGAGGACACCAGGATCAGAATGAGTGCTTAAGCCAATTGCCCTGTTTGGTTCAGGGCAAGGCGGATAATAATTCATCCTCATTGACTGCATACCATCACTGAATAGATCTCTCATTTCCTCTTCGTCCATCCTTAAAGCCTTTGTCAATTGGCATACGATGATCCTTGCTAGGCTCTTAATTTCTTTGCAGTAAGCTTCCAAGACGTCCCTACATTTCAATACACACAAACATATTAATTAAAAGATGAGGAGAGCGGGATATAGTTATAAGGAGATAGGCACCTGAGATTCGAGGGCAATTTCTGAAACAAGTCCACTTTGCGGATACGAGGAGGAAGAGTCATTATGCCAAACATATCACTCCAATCAAGCTTCTGCTCCTCCGATACAACGAATGCATTCCCAAAACCTTCCAAGCTGTCTTCCTGTTGCCATAGTTTCTTCTTTTCCT</gDNA_template>
            <first_frame> G  P  M  R  L  C  A  G  P  N  S  D  S  R  F  M  *  *  N  V  A  T  E  S  L  S  S  F  E  F  T  I  A  L  C  S  I  L  L  Y  T  P  L  L  N  I  C  Q  V  K  Y  I  T  F  T  R  I  I  F  S  G  G  S  R  T  F  L  P  P  S  C  L  Q  Y  S  Q  S  K  H  L  G  G  A  L  W  A  P  K  Y  H  L  F  G  L  V  D  L  Q  F  R  S  A  G  K  G  W  *  G  H  Q  D  Q  N  E  C  L  S  Q  L  P  C  L  V  Q  G  K  A  D  N  N  S  S  S  L  T  A  Y  H  H  *  I  D  L  S  F  P  L  R  P  S  L  K  P  L  S  I  G  I  R  *  S  L  L  G  S  *  F  L  C  S  K  L  P  R  R  P  Y  I  S  I  H  T  N  I  L  I  K  R  *  G  E  R  D  I  V  I  R  R  *  A  P  E  I  R  G  Q  F  L  K  Q  V  H  F  A  D  T  R  R  K  S  H  Y  A  K  H  I  T  P  I  K  L  L  L  L  R  Y  N  E  C  I  P  K  T  F  Q  A  V  F  L  L  P  *  F  L  L  F   </first_frame>
            <second_frame>  V  R  *  G  C  V  Q  V  L  I  R  I  Q  G  S  C  N  R  M  S  Q  Q  R  A  F  L  H  L  S  L  Q  L  L  C  A  Q  Y  S  Y  T  H  H  C  S  I  S  A  K  L  N  I  S  H  L  R  A  *  Y  F  Q  A  V  V  E  H  F  Y  L  H  H  V  S  N  I  H  N  Q  S  I  W  E  G  L  Y  G  H  P  N  I  I  F  S  D  L  *  T  F  S  F  V  Q  L  E  K  D  G  E  D  T  R  I  R  M  S  A  *  A  N  C  P  V  W  F  R  A  R  R  I  I  I  H  P  H  *  L  H  T  I  T  E  *  I  S  H  F  L  F  V  H  P  *  S  L  C  Q  L  A  Y  D  D  P  C  *  A  L  N  F  F  A  V  S  F  Q  D  V  P  T  F  Q  Y  T  Q  T  Y  *  L  K  D  E  E  S  G  I  *  L  *  G  D  R  H  L  R  F  E  G  N  F  *  N  K  S  T  L  R  I  R  G  G  R  V  I  M  P  N  I  S  L  Q  S  S  F  C  S  S  D  T  T  N  A  F  P  K  P  S  K  L  S  S  C  C  H  S  F  F  F  S  </second_frame>
            <third_frame>   S  D  E  A  V  C  R  S  *  F  G  F  K  V  H  V  I  E  C  R  N  R  E  P  F  F  I  *  V  Y  N  C  S  V  L  N  T  P  I  H  T  I  A  Q  Y  L  P  S  *  I  Y  H  I  Y  A  H  N  I  F  R  R  *  *  N  I  F  T  S  I  M  S  P  I  F  T  I  K  A  F  G  R  G  F  M  G  T  Q  I  S  S  F  R  T  C  R  P  S  V  S  F  S  W  K  R  M  V  R  T  P  G  S  E  *  V  L  K  P  I  A  L  F  G  S  G  Q  G  G  *  *  F  I  L  I  D  C  I  P  S  L  N  R  S  L  I  S  S  S  S  I  L  K  A  F  V  N  W  H  T  M  I  L  A  R  L  L  I  S  L  Q  *  A  S  K  T  S  L  H  F  N  T  H  K  H  I  N  *  K  M  R  R  A  G  Y  S  Y  K  E  I  G  T  *  D  S  R  A  I  S  E  T  S  P  L  C  G  Y  E  E  E  E  S  L  C  Q  T  Y  H  S  N  Q  A  S  A  P  P  I  Q  R  M  H  S  Q  N  L  P  S  C  L  P  V  A  I  V  S  S  F  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0072A04.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116464" stop="116730"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVATESLSSFEFTIALCSILLYTPLLNICQVKYITFTRIIFSGGSRTFLPPSCLQYSQSKHLGGALWAPKYHLFGLVDLQFRSAGKGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 137160 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 9144 bytes was the average size of a spliced alignment
$ 18704 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1700 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 09:01:58
-->
