<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-27 20:00:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580844" ref_strand="+" ref_description="SGN-U580844 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|1781299|emb|CAA70700.1| (e_value=4e-41) transformer-SR ribonucleoprotein [Nicotiana tabacum]; (*ATH) AT4G35785.2 (e_value=5e-29) | Symbol: None | transformer serine/arginine-rich ribonucleoprotein, putative, similar to transformer-SR ribonucleoprotein (Nicotiana tabacum) gi:1781299:emb:CAA70700 | chr4:16952968-16955234 REVERSE | Aliases: None; (*SWP) sp|Q80YR5|SAFB2_MOUSE (e_value=5e-11) Scaffold attachment factor B2 OS=Mus musculus GN=Safb2; ">
      <seq>tcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggcaagctttgctctctctaatctcccattatatctttcttctatttaacatatatgtgtttttttgcatattttcagaattttttaacctaattaattgtcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctaatgaagtctcccactgtatggtcgtcaaagatcctcctacttattgataaaattggtcatatgctaagtctttcttgagttagaaagtaccaatcaacctttatggataagtttttggcattttttacaagtaaaattgttgagcatgttaatggagaacaacactaacatagccttagcgatgcatttctgttttctttttgcacgcaaatagatctccaacggattttcttttaagccactgtctttagtagtattagttgacatagaaattttatgagctacatatacttgaaaaagatagcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagtactggttaatgaatgtatgtctgggttacaccttgaatgtggattatctgtaatctttctgaaactttatgatgtatgtattctctttcgttgcttgtcattttgttgtattcatggtcgtgacatcgtttacgatatctgttggttcattcttaaaaaaaagatgaccctcatcagactctggaagtacaatatgaaattcatgacataacacagcaaaaggagaggcaattgtgttagcgttcaaatgcgatattctgcttaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="7157" stop="11077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7457" g_stop="8723" g_length="1267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1278" r_length="1278" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8812" g_stop="8911" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1378" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9228" g_stop="9377" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1379" r_stop="1528" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9378" i_stop="10156" i_length="779">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10157" g_stop="10229" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1529" r_stop="1601" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10310" g_stop="10778" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1602" r_stop="2070" r_length="469" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U580844" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>2059</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7457" e_stop="8723"/>
          <exon e_start="8812" e_stop="8911"/>
          <exon e_start="9228" e_stop="9377"/>
          <exon e_start="10157" e_stop="10229"/>
          <exon e_start="10310" e_stop="10778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATT-TTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAAC-ACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGA-C-ATGTG-GTTGG--TGTTA--ATAAACTGGTTCA-ATGTTGT-ACTTA-T-TGGACTC-CCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTCATTTTGTTGTCTTCATGGTCGTGACATCGTTTACGATATCTGTTGGTTCATTCTTACAT</genome_strand>
        <mrna_strand>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGTATTGGCAATTTAGGGTTCGCTCCATCA-TCCGAAATGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACAACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATAGCATCATT-CTAGTCGAGTCA-ATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCTGATTCTCCACGCAAAAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTCATTTTGTTGTATTCATGGTCGTGACATCGTTTACGATATCTGTTGGTTCATTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U577921" ref_strand="+" ref_description="SGN-U577921 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|1781299|emb|CAA70700.1| (e_value=1e-36) transformer-SR ribonucleoprotein [Nicotiana tabacum]; (*ATH) AT4G35785.2 (e_value=1e-29) | Symbol: None | transformer serine/arginine-rich ribonucleoprotein, putative, similar to transformer-SR ribonucleoprotein (Nicotiana tabacum) gi:1781299:emb:CAA70700 | chr4:16952968-16955234 REVERSE | Aliases: None; (*SWP) sp|Q80YR5|SAFB2_MOUSE (e_value=1e-11) Scaffold attachment factor B2 OS=Mus musculus GN=Safb2; ">
      <seq>gatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaaggtcagctatttatacattgattggtgaaccattgttctgttggcttgcttttcttttttcttgacttggaggttttctgattatattcagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="7160" stop="9954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7459" g_stop="7513" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7514" i_stop="7652" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7653" g_stop="7672" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="75" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7673" i_stop="8612" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8613" g_stop="8723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="186" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8812" g_stop="8911" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="286" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9228" g_stop="9654" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="713" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U577921" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7459" e_stop="7513"/>
          <exon e_start="7653" e_stop="7672"/>
          <exon e_start="8613" e_stop="8723"/>
          <exon e_start="8812" e_stop="8911"/>
          <exon e_start="9228" e_stop="9654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACT</genome_strand>
        <mrna_strand>GATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578711" ref_strand="+" ref_description="SGN-U578711 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|1781299|emb|CAA70700.1| (e_value=1e-36) transformer-SR ribonucleoprotein [Nicotiana tabacum]; (*ATH) AT4G35785.2 (e_value=1e-29) | Symbol: None | transformer serine/arginine-rich ribonucleoprotein, putative, similar to transformer-SR ribonucleoprotein (Nicotiana tabacum) gi:1781299:emb:CAA70700 | chr4:16952968-16955234 REVERSE | Aliases: None; (*SWP) sp|Q80YR5|SAFB2_MOUSE (e_value=2e-11) Scaffold attachment factor B2 OS=Mus musculus GN=Safb2; ">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatgggtatcatggtgatcggggtaggtatcgtggccgtggtgactatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="7178" stop="10657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7478" g_stop="7513" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7514" i_stop="7652" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7653" g_stop="7672" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="56" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7673" i_stop="8612" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8613" g_stop="8723" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="167" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8812" g_stop="8911" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="267" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9228" g_stop="9377" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="417" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9378" i_stop="9467" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9468" g_stop="9694" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="644" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9695" i_stop="10156" i_length="462">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10157" g_stop="10229" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="717" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10310" g_stop="10357" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="765" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U578711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7478" e_stop="7513"/>
          <exon e_start="7653" e_stop="7672"/>
          <exon e_start="8613" e_stop="8723"/>
          <exon e_start="8812" e_stop="8911"/>
          <exon e_start="9228" e_stop="9377"/>
          <exon e_start="9468" e_stop="9694"/>
          <exon e_start="10157" e_stop="10229"/>
          <exon e_start="10310" e_stop="10357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGT</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GGTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U591456" ref_strand="+" ref_description="SGN-U591456 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|1781299|emb|CAA70700.1| (e_value=2e-35) transformer-SR ribonucleoprotein [Nicotiana tabacum]; (*ATH) AT4G35785.2 (e_value=2e-28) | Symbol: None | transformer serine/arginine-rich ribonucleoprotein, putative, similar to transformer-SR ribonucleoprotein (Nicotiana tabacum) gi:1781299:emb:CAA70700 | chr4:16952968-16955234 REVERSE | Aliases: None; (*SWP) sp|Q80YR5|SAFB2_MOUSE (e_value=3e-11) Scaffold attachment factor B2 OS=Mus musculus GN=Safb2; ">
      <seq>ggatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="8375" stop="10822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8674" g_stop="8723" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8812" g_stop="8911" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="150" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9228" g_stop="9377" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="300" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9378" i_stop="9494" i_length="117">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9495" g_stop="9694" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="500" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9695" i_stop="10156" i_length="462">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10157" g_stop="10229" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="573" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10310" g_stop="10522" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="785" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U591456" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8674" e_stop="8723"/>
          <exon e_start="8812" e_stop="8911"/>
          <exon e_start="9228" e_stop="9377"/>
          <exon e_start="9495" e_stop="9694"/>
          <exon e_start="10157" e_stop="10229"/>
          <exon e_start="10310" e_stop="10522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATGGTATCTCATCCTGGTGTTGGTTCTATCTCCATCTTTTAGCTGTTATAAGACGTGCGAAAATATTTAAGCTGCTATCCTGTGTGACTAGTGTCATATCCTATTTCTTAGTAATGGACATCGTTGTGTGCTTGTGCCACCTTCAGTTTTGCAGAGGTTTTTCGAGGAGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACC</genome_strand>
        <mrna_strand>GGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG.....................................................................................................................CAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGG-ACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U592251" ref_strand="-" ref_description="SGN-U592251 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agacttgcttttttttggcacagattagttgaatgttatattcttcctttaggagtgcatttggtgattctcttttctttggatgttagcatcataggttatgatttcatagaattacaaatatttctgtttttttttgttgtgaagagaacacccgatattagcaatttcatattcttccattacaaggaattcattctctagaatacattatctggtcgagataacccatttgttcttgatgtaaatcacatatgttcagatttcacatattgagatgatctattttgtttttcagtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatcagagcgcaaggggtgatggttatcatggtgatcggggtaggtatcgtggccgtggtgactatgggtaccgaagatctccaagacgttctccatatagaggtgggcgagattattctcccagacactctccatatagaggtgggcgagattattctcctagacgctcaccttatgctggaaggtcgagacgtgcgcgatcccggtcatattctccttatgaaaggaactaccctcgtggttatagataagtgggtttcgtcctcagctatggaaactgcttttgtaaggatctataagtttgatgtggactagtcttgatgttaaagagttctcgttaatgaagatatgtctgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="9559" stop="10946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9859" g_stop="10229" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10310" g_stop="10646" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="708" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U592251" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592251" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9859" e_stop="10229"/>
          <exon e_start="10310" e_stop="10646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATGGTAAGCTTCTGATGCTATGTAAGTTCCTATTCTATTTTTGATTTGTGGAATCTCTAAAGTACTCATTGCTTTGGTCAAAGGTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGT</genome_strand>
        <mrna_strand>AGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG................................................................................GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTTCTCGTTAATGAAGATATGTCTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U603117" ref_strand="+" ref_description="SGN-U603117 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aataagatccatggaatttgaattgtaagtcaagtactggaccagctgaaaattaaaatttgaataattaattagtattgattattagtccattcttatttattttttcatcttctttttcatgtatatatgtctgtcctagactttgcatttggctaataattaagcatgacaataaatgaatattgtgcgatatttggtggatctatatgtgaatgtccatagcgttactgaggctataaccagcttgtttatatggactattttattttaattccactctgatttttctctaaaataatggatttgtccttttgctaggattaatgaagaacatactatttgtacttgtgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="27410" stop="28366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27710" g_stop="28066" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U603117" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27710" e_stop="28066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAGATCCATGGAATTTGAATTGTAAGTCAGGTACTGGACCAGCTGAAAATTAAAATTTGAATAATTAATTAGTATTGATTATTAGTCCATTCTTATTTATTTTTTCATCTTCTTTTTCATGTATATATGTCTGTCCTAGACTTTGCATTTGGCTAATAATTAAGCATGACAATAAATGAATATTGTGCGATATTTGGTGGATCTATATGTGAATGTCCATAGCGTTACTGAGGCTATAACCAGCTTGTTTATATGGACTATTTTATTTTAGTTCCACTTTGATTTTTCTCTAAAATAATGGATTTGTCCTTTTGCTAGGATTAATGAAGAACATACTATTTGTACTTGTGAATT</genome_strand>
        <mrna_strand>AATAAGATCCATGGAATTTGAATTGTAAGTCAAGTACTGGACCAGCTGAAAATTAAAATTTGAATAATTAATTAGTATTGATTATTAGTCCATTCTTATTTATTTTTTCATCTTCTTTTTCATGTATATATGTCTGTCCTAGACTTTGCATTTGGCTAATAATTAAGCATGACAATAAATGAATATTGTGCGATATTTGGTGGATCTATATGTGAATGTCCATAGCGTTACTGAGGCTATAACCAGCTTGTTTATATGGACTATTTTATTTTAATTCCACTCTGATTTTTCTCTAAAATAATGGATTTGTCCTTTTGCTAGGATTAATGAAGAACATACTATTTGTACTTGTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575470" ref_strand="+" ref_description="SGN-U575470 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147773471|emb|CAN77952.1| (e_value=7e-59) hypothetical; (*ATH) AT4G35780.1 (e_value=7e-55) | Symbol: None | protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max, (gi:13124865) from Arachis hypogaea; contains Pfam protein kinase domain PF00069 | chr4:16946526-16950462 REVERSE | Aliases: F4B14.1; ">
      <seq>ctgatcccacaaagaggataagctcatgaagaaatgtggagccactgtttgtaagaatgggatgtatacttttttcttcttttcccatatgccatcttcgtaagcactaataaatccccgcacccaattttgtaactagaaaaacggaatcttctcattctctctcctccatcttttcccctaaaaaaaatttgtcccctttctcgtatttacccatcaaatcaactctaaatccattccttctgttcatcatgaaaaattttctctaaattatggaaactactttcttatgctactctactgttacttgcaacttttcccccctgtaaatccattacaaagaggaggagattttgtgaattctgtaattttgtatttgtgaatggcgatggacgacaacgagagttgcgggagcagagcgatggagcccttgtcgcccaagcaaaatcggctacagaggcagaagaatgaagtgtttaaccaagtgcttagtagactacaggatttgaatctccaagaggttaaactccctggctttgaagaccagctttggcttcactttaatcgcctccctgttcgttatgcatcggatgtaaatgtggaaagagcagaagatgtgctcatgcacaagaggttgctggacatagcggaggatcctgagaatagacctgcctttgatgtccgccttgtgcaggttcagcctatgtacactggaacgtcaaccaatactgttgatgtagatccttcagttaatgaagaaatcccaagcattcatcctcctccaacttttggttcatcaccaaatcttcaaggccttgaaattcatgatgataaagctcatgtgaatcatggagatagtgatatcaattcaacttcgcggaacaccaggccaatgcacgagattactttttcaactattgacaagccaaaaacgctcactcagttgaccaatataatatctgagattggtctgaacattgagaggcccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="35916" stop="41567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36216" g_stop="36794" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36795" i_stop="36948" i_length="154">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36949" g_stop="37063" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="694" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37064" i_stop="39255" i_length="2192">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39256" g_stop="39329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="768" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39330" i_stop="39472" i_length="143">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.714" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39473" g_stop="39592" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="888" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39593" i_stop="39737" i_length="145">
            <donor d_prob="0.018" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39738" g_stop="39792" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="943" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39793" i_stop="41218" i_length="1426">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41219" g_stop="41267" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="991" r_length="48" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U575470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36216" e_stop="36794"/>
          <exon e_start="36949" e_stop="37063"/>
          <exon e_start="39256" e_stop="39329"/>
          <exon e_start="39473" e_stop="39592"/>
          <exon e_start="39738" e_stop="39792"/>
          <exon e_start="41219" e_stop="41267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCCACAAAGAGGATAAGCTCATGAAGAAATGTGGAGCCACTGTTTGTAAGAATGGGATGTATACTTTTTTCTTCTTTTCCCATATGCCATCTTCGTAAGCACTAATAAATCCCCGCACCCAATTTTGTAACTAGAAAAACGGAATCTTCTCATTCTCTCTCCTCCATCTTTTCCCCTAAAAAAAATTTGTCCCCTTTCTCGTATTTACCCATCAAATCAACTCTAAATCCATTCCTTCTGTTCATCATGAAAAATTTTCTCTAAATTATGGAAACTACTTTCTTATGCTACTCTACTGTTACTTGCAACTTTTCCCCCCTGTAAATCCATTACAAAGAGGAGGAGATTTTGTGAATTCTGTAATTTTGTATTTGTGAATGGCGATGGACGACAACGAGAGTTGCGGGAGCAGAGCGATGGAGCCCTTGTCGCCCAAGCAAAATCGGCTACAGAGGCAGAAGAATGAAGTGTTTAACCAAGTGCTTAGTAGACTACAGGATTTGAATCTCCAAGAGGTTAAACTCCCTGGCTTTGAAGACCAGCTTTGGCTTCACTTTAATCGCCTCCCTGTTCGGTTAACTTCATAAACCCTATCTTTCCTCATTTTTTTTAAAATTTTTTTTTGCCATTTGTTCTATTTTGTACTGGATAATTGAGTAATTAATCCATTTTCTGTCTCGGAAGTTTAAGTTTTGAAGTTTTTTGTTTCTGAATTTGGGTGCGTGCAGTTATGCATCGGATGTAAATGTGGAAAGAGCAGAAGATGTGCTCATGCACAAGAGGTTGCTGGACATAGCGGAGGATCCTGAGAATAGACCTGCCTTTGATGTCCGCCTTGTGCAGGTTATACTCTTATCTGCTTTTCGTGCATTTTGATGTGTGTTTGCCTTGTAAATGCTTTTTTCTCTTGATAACTCTGAATATGGCATTTGAAAAACTTCTCCCTATGTATGTATGACAAGGTGGAATGTCTAATTTGCTCTTTTCTCTTGACAACTCTGGAAACCCATACCAAGTTGATATGATATTTGTAAAAACTTTTCCGTATGTATGACAAGGAAGAGTCTTTAATTTGATCGTAGCTGAACAAGTTGGGGATTTGATTCAATACGTAAAATGTTCCCGAGAAGCACAGCATCTATTATTTATTGCTTTTACAGTAGTCGAGAGCAGTTGCAAAAACTAGTAAATTTGCCAATAATCTTGTCAAAGCCATATTTTTATTTCTTTCATCCATCCCATACTTCTCTTTCATGCTACCTTAGGTTGGGCATGGAGAACTTTCTTTAGTGCTGCTGTTCATTTTTACATCTGTTACACTCTCCAATGACCAAATTAAAACCATTTAAAACATTCTCTTATCCTGATAGGCTTCAGTTTTCACATTTAAGGGGATTGAAGTTTGTGTTTCAAGTAGAAAGAGAAGATGCTGGAAGCCAAAAGATAAATGTTAATATAAAATTATGGATGTGAGATCATAGAAGATTTTAGATGGTCATATTCTGCAGAAAATGCAAGCAGCACTCATTGACGATAAAAAGAAAGAAGATTTGAAATGTTCATGTTGAAAACATAATTAAGTTAACAACGCTGTTTCTTCTCTATCAAGTTAAACATTTAAATCAAGGAAAATTTTCTGAGTTTGAGTCTTATTGTCACCAACAATCAAAAAGATTCTTTACATGCTTACCTCATGAAAAAGTCAAGATGAATGCAAGTGGGCATGTTGAGAACATAATTTAGTAAATGAAAGTGTCATTTTTAAAATAATTAAGCTTTTGGATAAAGTGGCCACACATTTCAACAGTTTACATTCAACAGAGAGTGCAAGTAGGACTCATAGAGGATAAAAGGAGAAAAACTACTTGAGATTAAAGACGAGTTAGACTTATAATCACATGGAGGGAAATTGTACCTATAGACTTACAATTTTTCTGAATCATGTGGATGAAGCTAATGATGGAACACAATGAAAGCAAAAGTATCCATATTAGTGGTACTAATATGTTAGCAGTAAAATTTAGTTTTTTTAATCTTCCTCTTGCATTAGTGTTCGTGTTTGCTAGGAGTATTATTATTCTGGTCAGAGACTTATCTTGGTGCCAATGTAGAGAGTTGTTAATCTCACAACCAGTTGTGTTTGTAACAGTAATATAAAAATATGGATGCTCATTACAGAATAGGTACACTGGATTGACTTGTTTGAAGAAAGTTTAATGGATATCATATTTGTTAATAAGATAGGAGATGTTCTGTAATTGGTTCACCTTGGGCACATCTCCGTTGATGGCAATAGGGTGTTATGCAAAGAGCAAGGTGTGTGTTGAAGGTAATGAGGGGAATAAGATAAAATTGGTCGTTCTTAGTATAGAGGCTACAAGCCTTTGTGATTTGTGGGTGATGGATTAGCAATATGGGAAGTCGAATGGGTTCTTAAGTCTTGTAATTAGACCGTACATCTAAAGGCATGAATACTTTGAGAAGAGAATATGGGATTGACATTTACTCATGCCCTTTAGATCATATGAGATCTTTAAGAGGGTATGAATTATATGTAAACCTACTGTAAAAGTGATTTTGATATCTCCTCAATATCCTAAGACAACTTGAGGTTAGACTTGTATTGAAGAAATTTAGATCTCTAGGCCATTCCTCTAAGAGAAAAGAATTTTTTTATTAAATCTTAGCAAATCAATGGAATAGCTATTTATATAAAAGAATTCACAAAATGGCTACAAATGACTAACCAGTCAAATATTTGAGCATGTAATAATCCGTGACCAGCTTTGACTGTGGTTGAAACAGTTGCACCATAACAGGATCCAATTGGATATATCTTGAAAGTCCTGGGAAATCTTGGAAAATAATGTAGAAAGGATAGTCTCTTAGTACATATTCCTGTACTAATATTGGAATATATATTGTAAACCAACAGAAAAGAGAATGCAAGTCATGGCCTGGCCTAAGACAAGTACTTTATAATTTCAAGAGATTCTTGTTACATGCATGTTCTCATTTTTAAGTTCATAATGCAGGTTCAGCCTATGTACACTGGAACGTCAACCAATACTGTTGATGTAGATCCTTCAGTTAATGAAGAAATCCCAAGGTATGCTCTTTAGTTTAAGAATTTAAGTTTTTCTTTTTTTCAGTATAACTTCTTTCTGTATATTACTTCTGCACATTTGTTTTTTCTCTATTGTGCTTCGTTAAATCATTTAATTTATGGGCTTCCATATTGTCCCTCTCCAGCATTCATCCTCCTCCAACTTTTGGTTCATCACCAAATCTTCAAGGCCTTGAAATTCATGATGATAAAGCTCATGTGAATCATGGAGATAGTGATATCAATTCAACTTCGCGGACAACCAGGTTGAATTGCCTTATTTCTTGAGTTGAAGATGATAAGATCCATGATACTAGTTTGGCTTCATAGCTTTGATAGAAAGTGTATTTATTGTTCACAAAGGATTTCTAGTTGACTTTTCTTTCTTATGAGCCAAATGATTTTGTGCAGGCCAATGCACGAGATTACTTTTTCAACTATTGACAAGCCAAAAACGCTCACTCAGGTGCCTTATTCTTTTAGGAATCCTCCTCCCTTTTTGTTCATAAATACATCTTTTATCTTCTCATAATCAAACAAAGACTATAGTTTCATGAATTTATCTTATGCAGAGCTAGTGTGAATTTAACCAGAAATAAGGCTAAGCCCCTCGAATTCCTGTTGTGTTGTGGATATTATGAGTCCAATATTTGACAGGAAAAAAGGTTAAATCCCTTGAATTCCTTTTTGTGGATGGATAGTACCGTACCTGTCATAGGACTCACCACATATAATAACTGAAGATAGACTCATTCTAGATTAATAAGCATGGATAGAATGACCTTTAGCTGAGTCGTTCAGCTGATATGATATGGTGTTTGATTTCTATTTCTCAAGTGCATAGTATAAGCATCTTAGTCAAGATAAAATTTGATAGAGAAGACTACTTGATTCACCCCCCCCCCCCCCAAACATGAAAAGGGTGATAGAAGACTACACTTAAGGGGAAACAGAGGATAATAAGGAAAAGTTGTTTTTATGGACCCACAGATTGATTCTTTGATTAACTTCTGCACCTAAGAGATGAGGGTGGGGTTAGTCAGTTAATACTAGGGATGGCAATAGGGCGTGGTGGGGTGGGTTTAAGGCTATGCACGGGGGGAGAGATGCGAGGCGGGTTGAAGTGGGTTTTTTAAAGCTAATGCGGGGCGGGGTGGGATGCGGGTATATGTGATTTTATATGGGTTCAAACCTAAAGCTACTAAAATATTCAAAATAATAAATGAAAATGTTTTAATAAAAATAATACGATTTCTTACATGTTTCCAGTTGATCTCTACAAAATAAAATTTTAAGTCATTATCTATTAAATTAATACAACTTTATGAAAAAATAATTTATTTTTATGAATTTTATTTTAGTATCAAAGTTAACCAGAAAAAGAAAATATTAAAAAAATTATGCGGGGCTGGGTGGAGCGGGTTGAAAATGGAAAGAAGTTGTAATACGGGATGGGCGGATTAAAAATTTTGCGGGTTAAGCTCAGCCCGCCTGCACTACCCCATTGCCATCCCTAGTTAATACCTAGCTTTGAAGAATATTTGTCTTCATGACTATCTGCTTTTCTGATACAATTATGTTCCAAAGTTAATATATGAAATTCTTATGTAAATGCTCAATAGTTGTACCTACAAATCTAACAGTCTCCGTAAAATATAGAGACAGTATACCTGGACCGAAATCTGTATCTTTTATTTGCTTTCTGTCTAGTGCAATTTAAGCTTATATCTCTGATTAGATTATTCATTCCTGTTCAGTCCTGGAAGTTATGTAACTTCATTAATCTGCAGATTCTGCCATATTTTCAGAGTTCTATCAAACATATTTATCTTACCATGTTAACTGTGTTCTCATCTTCTTTACTTGCACTGATGTCCATCCTGGATTTCCAGTTGACCAATATAATATCTGAGATTGGTCTGAACATTGAAGAGGCCCATG</genome_strand>
        <mrna_strand>CTGATCCCACAAAGAGGATAAGCTCATGAAGAAATGTGGAGCCACTGTTTGTAAGAATGGGATGTATACTTTTTTCTTCTTTTCCCATATGCCATCTTCGTAAGCACTAATAAATCCCCGCACCCAATTTTGTAACTAGAAAAACGGAATCTTCTCATTCTCTCTCCTCCATCTTTTCCCCTAAAAAAAATTTGTCCCCTTTCTCGTATTTACCCATCAAATCAACTCTAAATCCATTCCTTCTGTTCATCATGAAAAATTTTCTCTAAATTATGGAAACTACTTTCTTATGCTACTCTACTGTTACTTGCAACTTTTCCCCCCTGTAAATCCATTACAAAGAGGAGGAGATTTTGTGAATTCTGTAATTTTGTATTTGTGAATGGCGATGGACGACAACGAGAGTTGCGGGAGCAGAGCGATGGAGCCCTTGTCGCCCAAGCAAAATCGGCTACAGAGGCAGAAGAATGAAGTGTTTAACCAAGTGCTTAGTAGACTACAGGATTTGAATCTCCAAGAGGTTAAACTCCCTGGCTTTGAAGACCAGCTTTGGCTTCACTTTAATCGCCTCCCTGTTCG..........................................................................................................................................................TTATGCATCGGATGTAAATGTGGAAAGAGCAGAAGATGTGCTCATGCACAAGAGGTTGCTGGACATAGCGGAGGATCCTGAGAATAGACCTGCCTTTGATGTCCGCCTTGTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGCCTATGTACACTGGAACGTCAACCAATACTGTTGATGTAGATCCTTCAGTTAATGAAGAAATCCCAAG...............................................................................................................................................CATTCATCCTCCTCCAACTTTTGGTTCATCACCAAATCTTCAAGGCCTTGAAATTCATGATGATAAAGCTCATGTGAATCATGGAGATAGTGATATCAATTCAACTTCGCGGAACACCAG.................................................................................................................................................GCCAATGCACGAGATTACTTTTTCAACTATTGACAAGCCAAAAACGCTCACTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACCAATATAATATCTGAGATTGGTCTGAACATTG-AGAGGCCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U595711" ref_strand="+" ref_description="SGN-U595711 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttcccctaaaaaaaatttccccccctttctcgaatttacccatcaaatcacctctaaatccattccttctgttcatcatgaaaaattttctctaaattatggaaactactttcttatgctactctactgttacttgcaacttttcccccctgtaaatccattacaaagaggaggagattttgtgaattctgtaattctgcatttgcgaatggcgatggaccatcacgagagttgcgggagcccagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="36090" stop="36936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36390" g_stop="36636" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U595711" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36390" e_stop="36636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTAAAAAAAATTT-GTCCCCTTTCTCGTATTTACCCATCAAATCAACTCTAAATCCATTCCTTCTGTTCATCATGAAAAATTTTCTCTAAATTATGGAAACTACTTTCTTATGCTACTCTACTGTTACTTGCAACTTTTCCCCCCTGTAAATCCATTACAAAGAGGAGGAGATTTTGTGAATTCTGTAATTTTGTATTTGTGAATGGCGATGGACGACAACGAGAGTTGCGGGAGCAGAGCG</genome_strand>
        <mrna_strand>TTTCCCCTAAAAAAAATTTCCCCCCCTTTCTCGAATTTACCCATCAAATCACCTCTAAATCCATTCCTTCTGTTCATCATGAAAAATTTTCTCTAAATTATGGAAACTACTTTCTTATGCTACTCTACTGTTACTTGCAACTTTTCCCCCCTGTAAATCCATTACAAAGAGGAGGAGATTTTGTGAATTCTGTAATTCTGCATTTGCGAATGGCGATGGACCATCACGAGAGTTGCGGGAGCCCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U579369" ref_strand="+" ref_description="SGN-U579369 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157340639|emb|CAO47444.1| (e_value=4e-159) unnamed; (*ATH) AT4G35780.1 (e_value=3e-154) | Symbol: None | protein kinase family protein, similar to protein kinase (gi:170047) from Glycine max, (gi:13124865) from Arachis hypogaea; contains Pfam protein kinase domain PF00069 | chr4:16946526-16950462 REVERSE | Aliases: F4B14.1; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-65) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1; ">
      <seq>tttttcaactattgatggtttctccttggatgtctttgtggttgatggatggccgtatgaggagacggagttgcttaagagtgaggtgcaaaaggaagttatgaggagcaaggagcagccacaagtcctgcctccaatcagtgaaccaggtcaaacatctgaatcaggctccgatagtgtaaaaatacctactgatggatctgatgactgggaaattgatatccgcctgctgaaatttgaaaataaagtagcatctgggtcatttggagatctgtataaaggtacatactgtagccaggaagtggctataaaagttctcaagcctgaaaatttgaatatggatatggtaaaagagttctctcaagaggtctttatcatgaggaaaattcggcacaaaaatgttgttcaatttataggggcatgcacacgacctcccaacctgtgcatcgtgacagagttcatgaccagaggaagcatctatacttttttgcacaagcaaagaggtgcttttaagcttcctactctcctgaaggttgcaattgatgtttctaagggaatgagttatctgcaccaaaataacataattcatcgtgatctgaagactgccaatcttctgatggatgaacatggagttgttaaggttggtgactttggggttgctagagtgcagactcaaactggggtgatgacagctgaaactggaacgtatagatggatggctcctgaggtgattgaacacaaaccgtatgaccacaaggctgatgttttcagctttggtatagtgctgtgggaacttctgactggagaaattccatatgcatacttaacaccattacaagcagcaataggtgtggtgcaacagggtctacggccaacaattcctaagagcactcatccaaagcttgctgaacttcttgaaaaatgctggcagcaagacccaacacagagaccagatttctcggagattttggatattctgaagcaactaacaaaggaggttggagatgatggagaggacagacacaaggacaaatcaatcggtggctttttctcgtctcttagaaagggcaatcactgagaatttactaaaagagaggaggttgatcggccttcagcttttgtctcggtgtacagattctctgatatccaaacttgatctgattagtttttgaaaatcatggtttttatctaatgtcgcttggcattcatttactattcctaatttagtcaggggtgcaagctggtgagtaaagctttggcaactctctacagaataactgtgaatttgcgcaagttctaattcctaacccttttttgtaccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="40969" stop="47285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41269" g_stop="41329" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41330" i_stop="42002" i_length="673">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42003" g_stop="42053" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="112" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42054" i_stop="43307" i_length="1254">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43308" g_stop="43468" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="273" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43469" i_stop="43544" i_length="76">
            <donor d_prob="0.235" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43545" g_stop="43652" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="381" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43653" i_stop="44159" i_length="507">
            <donor d_prob="0.209" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44160" g_stop="44233" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="455" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44234" i_stop="44511" i_length="278">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44512" g_stop="44687" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="631" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44688" i_stop="45369" i_length="682">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45370" g_stop="45465" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="727" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45466" i_stop="46125" i_length="660">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46126" g_stop="46206" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="808" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46207" i_stop="46290" i_length="84">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46291" g_stop="46344" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="862" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46345" i_stop="46435" i_length="91">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46436" g_stop="46570" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="997" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="46571" i_stop="46652" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="46653" g_stop="46983" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="998" r_stop="1328" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U579369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41269" e_stop="41329"/>
          <exon e_start="42003" e_stop="42053"/>
          <exon e_start="43308" e_stop="43468"/>
          <exon e_start="43545" e_stop="43652"/>
          <exon e_start="44160" e_stop="44233"/>
          <exon e_start="44512" e_stop="44687"/>
          <exon e_start="45370" e_stop="45465"/>
          <exon e_start="46126" e_stop="46206"/>
          <exon e_start="46291" e_stop="46344"/>
          <exon e_start="46436" e_stop="46570"/>
          <exon e_start="46653" e_stop="46983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAACTACTGATGGTTTCTCCTTGGATGTCTTTGTGGTTGATGGATGGCCGTATGAGGTACAGAATTAATGTTCCTCTTGAGATATAATGAAAGGCTGACTAGCAGTTTAGCAGTCATTTCTTAGCTTTAGTTTGTCATTTCTTGTTAACAAGGTTAAGTTTTTGAAATTATGTTCCTTGATCATTTAGTAGATTATGTGTTAGTTTTAGCCCTGTTTTTTCGTCCTCATGTCCCAGTATATATGGCTCCCATCAATTTTGGACAGCCCTGAAATATTTGACACCGTTTCATTCCTATACATCTTTCAATAATTCAAACTCATCAAACTTCTAAACTCTGAACTGTGATGTGATTTCTTTTTCCATCAAATGTTTAAACCAACTTTGTTGGCATACCTTAGTATATATTCTTCTACTGTTAGTAATATAGTAATATATATCAAACTAAAATCTATGATATGTCCAGTGTGAAATATTGTTATATACTATGAGATGGTGAGGATGAACAACTATAGTACTGATAAGTGATAACTTTCTCATTCTAGTCATATTTTTCAACTAGATATATTTTCTCTTAATAGGTTGTTCAAACCTTGAGATGTTATTTGGTGAATTGAGGATCTAGTATATTTTTAAAATGGAAGTTTGGAAATTCAACCCCTCGTTCTTCTTCTTTTCCCTTTTGTAGTAATTTACTTTTATACTTATTCATCTGTGTTTGAAATTCTAGGAGACGGAGTTGCTTAAGAGTGAGGTGCAAAAGGAAGTTATGAGGAGCAAGGTAGATATTAATTCTGGCACTCAATATTATCTACTTAATATGATTTATGTGGCTATCTTCAAATGCTGATCTTGCTGTATTGTCTTCATAATGGTGCTATGCATTTTATAGTTAATGTATGTTGTCCACTTAGTTATTAAGATCAGATTTTTTTTAAAAAAAATACTCAAAATATATATTCTATGAATTTCTGGCTCACTTTTGCTAGTCTGATGCTTTCCATGAGTAAGATAGCATACTTAACAATCGTATTAATATTCCAGACAAATTTATTGAAGAGAGTTGTTATTTCTACTACAGTAATGCTGTTAATGCTCTGTTGCTAACTCTCCCCGAATTAGTTTCAGTTATTGCAGACACAGCTATAGCTCAAGTAAGTTTTGACATCAACTGAATTTATGGTTCATATATGTATTGCATAGCAGGTTTAGAAGTCATGCAGATATTCTCTAACATCCTGCTTCACAGCGCATAACGGAGGTCCTAAGGTTACATCTGAAAAAAGAAATGTGAATCCTCACAGTAAATTTTAAAGCTCAACTTAATAATTACTTGACAACTTGGGCTCAAATGCCTGACAAAATCGTAGGTTGGTAGGATACTTATGTTAAATGGGCTTGTAAGAAAACAAAACGAGAAAATGATCAAAAGCCCCCCAACCTATACACGAAATCCAACTACACACTCCAACTACACGGGTGTCCCATTACCCACCTAAACTATATTTTTATCTATTTTTTACCCACCTAAGTGCTGACCTGTCATGGGAGGTGTTGTCACCGCCTCTAGGCGCGTTTGAAGCAAAATTTGACGAAAAATTTCCCCCTTCTCCTACAGTCGTCTGCCCCACTTTTAAATACCCATTACTTCTTCTTCCCCCACCATTAATCCTTGGTTATAAAATGATAGAAGGAATCAAAACAATAACTATGCCTCAATCCAGTCAAGTTGGGGTCAGTTGTATGGATCACTAACCTTATATTTAAGCTCATCTCAAATCTATGTTGTCAAATAGAAATAAAAAGTACTAACAGTTCACTGTTTTTCCTACTAGCATATAAGCCTTTGACACGACCCTGAGGACTCCTAAAGCATAGGAGGATAAACTTTCGTAACTGACTAAAACATAATTCCAACTGAACTTACTAATTGTAGGTTCAAATTTGAACAAGTTTTCTTTTATAGTTTTCTAGATTTTGATTATCATATTGAACAGATGGTCTCAGTGCTTTGTCTTCTGGTAATGTTTTTCAGGAGCAGCCACAAGTCCTGCCTCCAATCAGTGAACCAGGTCAAACATCTGAATCAGGCTCCGATAGTGTAAAAATACCTACTGATGGATCTGATGACTGGGAAATTGATATCCGCCTGCTGAAATTTGAAAATAAAGTAGCATCTGGGTCATTTGGAGATCTGTATGAGCCAACAATCCATATCTTGATTTCCAGATGAGTTTGTTGAGTCGGTGGACTTATACTGTGTCTTTTTCAGGTATAAAGGTACATACTGTAGCCAGGAAGTGGCTATAAAAGTTCTCAAGCCTGAAAATTTGAATATGGATATGGTAAAAGAGTTCTCTCAAGAGGTCTTTATCATGAGGTGTGTCTGTTGTACTATCATGGTTGAGAATCCCTTTCAGCATAACTTCACTATTGTTCAAGTATATTAGAGAATCTTTCCATAGTTAAAAGTCTATTTGAGGGATTGTTTTTTTACTCCTAGATAGAGTCGTACTCTATTGAAAAAATTTGTTCTGTGCCACTAGAGATCTTACAATATTTTACTCTTGCCGTGTAAATTGAATGTCCTGTTTCCTTTATACTTTGTTGAGTCACTAGGTATTTCTTCTTTATGCGGATCTCAGCTATTTTGTTTTCTTTTTAGTGGCATTAGGCTATTTGGATGAAAAGGATGGATCATACATAATGCTAGGGACTAGGTTCTGCCAGTCACACTTAAAGTCTTGGAATAATTACAAATTTAAACATTAGTGGATATGTGAATTTGAATTTTATAACTAAATTTGTGTTTATCAGTCCAACGTCCTATTTCTTGTTTCTAAATTTCTTTCACCAAGTTTTGAGATCTTGTCTCGCTATGTTTTAGGAAAATTCGGCACAAAAATGTTGTTCAATTTATAGGGGCATGCACACGACCTCCCAACCTGTGCATCGTGACAGGTATATTTCAAGATTTTATATATTTAAAGTGAACTTCTAAGTCGGTTAATAAATTGGAGAAACTGTTTGTTCTCTGTTGAATACTGTTATATAATGTTCGCCGGCAGATACGTAGTGTTTAATATGCAGAGGTGTGCTTTTATTCATTTTCCAAATTTTGAATTTTCTCCTCACACTACTGCACTTGAATGGCAGCTTATGTTTGTAACTTTTTGGTGTACCTCTATCCTTCTTCATCACGTTAATGACAAGGTGCATCTGATAATTTTATTGATCAGAGTTCATGACCAGAGGAAGCATCTATACTTTTTTGCACAAGCAAAGAGGTGCTTTTAAGCTTCCTACTCTCCTGAAGGTTGCAATTGATGTTTCTAAGGGAATGAGTTATCTGCACCAAAATAACATAATTCATCGTGATCTGAAGACTGCCAATCTTCTGATGGATGAACATGGAGTAAGTCAGAGCTGTACTGCAACTGTTTCAAAAAGCTTGTCTAGATTATTATATTTTTGGAGTCTAGTGTATCATTTCATCTGTTAATAAGCTATCCTAAAACTGGTACATACATTCTCACGCAAAAATTTGGGTGCAATTAAACATGAAGGCAATTCAAGGTTAATATGCAAACAGTGAGATCTGTATGACTTAGAAGTCCAAGGTTTTTCATTGATCAGAACCCTGTTAATAGGCTATTTGAAATGTCTAAACATGGACAATATCCTCTAAAAACTATTTTAAGAGAAAGAACCATAAGCCGTGATTGGACTGCAATATTAAAACCTTTAGAAGAAATGCCACAAATAAAGTTGATGGAAAAGTTCCTTTGCACGGTCCACTTACTCATTGAATTCTATAGAAAGAAAATCTATGAGTAATAGTAGCACAGTATTAAAGCTTGATCAGTGGGAATTTAGTTTGGTTCATATTTTGAAAAACGTGAAGTCCAAAATAGTACATGGTTTCTTGTTAATTTCTATATCACCTGTTTTTGCATTTCCAAGGAAATTTATTCATGAACTTTGCTTAATCACACAGCAACACCTAAATTGCTGCTGGGCAGAGTTACTTCCCACGTTATTTGATTTGTTTACAGAATGTTCACTCTGACTTTTAAGATCCATCCTCTCCTTAACAGGTTGTTAAGGTTGGTGACTTTGGGGTTGCTAGAGTGCAGACTCAAACTGGGGTGATGACAGCTGAAACTGGAACGTATAGATGGATGGCTCCTGAGGTGCAGAAGATCTGAACTTAATTTTATGCTACAATATCCTCAATCCAATTGAAATTCATGATTTTAAGTTCTTTGATCTTCTTGCTGACAGATATGCATGATTACTCACTAATTTTCCGTTTATCCTCGTGCTTAGATTTTGTTTCCACAATAAAATAACTGCAATAGTTCCCCTCGAGCTGATTTGGGCCTAGTGCTTTGGGATACACCTCAAGCATCTTGTGTGGTTTAAGCACGAGGTGCTTTTAATATGTGTGATTCTCTCTGACTTTTGCAATTTTATCCTTGTACTTGGATTTTGTTTTCACACTCTTAGTGTGGTTGTCACCTTTTCACTTTCATACAGCTGTGAATTGTGTTTCTGTGTTCACCTTGATGCATCTTGGATACTTCATGCACAAGGAGATTTCAATAACCTTCTACCAGAATTACTTGTTAATATGCATTGCATGATTCCTTTACAGTATACCATGGAGATACATTTGATTCTGCAATATTAAGTATAAAAATATGAACCTCTTGGTAAATGGTTTTGACTTATTTTCCTCTTAATACTACAACATTCTCTTACATTATCCCCGTCATTTGTATCCCAGTTTTGTGCTTAAACATCGTGCTGCATGCAAGTGTCGTACTTAAAATGGTTTTTATTTGTTGAAGGTGATTGAACACAAACCGTATGACCACAAGGCTGATGTTTTCAGCTTTGGTATAGTGCTGTGGGAACTTCTGACTGGAGAAGTAAGTCTCTGCGTGGCATGTATTTGTGTTCACGTGTTAGTTGCTTGACACCTCAACTAATGTTCATGTTCTGTGATGGAGCAGATTCCATATGCATACTTAACACCATTACAAGCAGCAATAGGTGTGGTGCAACAGGTAGTATAAAGTCCACTGTCATCATTAGTACTGTTGATATCTTCCCCAGTTAAACCAACACCTCACACATTTGGTTTAACATGGTTATCAGGGTCTACGGCCAACAATTCCTAAGAGCACTCATCCAAAGCTTGCTGAACTTCTTGAAAAATGCTGGCAGCAAGACCCAACACAGAGACCAGATTTCTCGGAGATTTTGGATATTCTGAAGCAACTAACAAAGGAGGTGGGCATTTTTATTTTATAAGCTTGGTTTTATTTAAGTTTGTTCATTCTTTGAACCTAGGTTTGTATGTTTGTAAAAACAGGTTGGAGATGATGGAGAGGACAGACACAAGGACAAATCAATCGGTGGCTTTTTCTCGTCTCTTAGAAAGGGCAATCACTGAGAATTTACTAAAAGAGAGGAGGTTGATCGGCCTTCAGCTTTTGTCTCGGTGTACAGATTCTCTGATATCCAAACTTGATCTGATTAGTTTTTGAAAATCATGGTTTTTATCTAATGTCGCTTGGCATTCATTTACTATTCCTAATTTAGTCAGGGGTGCAAGCTGGTGAGTAAAGCTTTGGCAACTCTCTACAGAATAACTGTGAATTTGCGCAAGTTCTAATTCCTAACCCTTTTTTGTACCTTTCTTA</genome_strand>
        <mrna_strand>TTTTTCAACTATTGATGGTTTCTCCTTGGATGTCTTTGTGGTTGATGGATGGCCGTATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACGGAGTTGCTTAAGAGTGAGGTGCAAAAGGAAGTTATGAGGAGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCCACAAGTCCTGCCTCCAATCAGTGAACCAGGTCAAACATCTGAATCAGGCTCCGATAGTGTAAAAATACCTACTGATGGATCTGATGACTGGGAAATTGATATCCGCCTGCTGAAATTTGAAAATAAAGTAGCATCTGGGTCATTTGGAGATCT............................................................................GTATAAAGGTACATACTGTAGCCAGGAAGTGGCTATAAAAGTTCTCAAGCCTGAAAATTTGAATATGGATATGGTAAAAGAGTTCTCTCAAGAGGTCTTTATCATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTCGGCACAAAAATGTTGTTCAATTTATAGGGGCATGCACACGACCTCCCAACCTGTGCATCGTGACAG......................................................................................................................................................................................................................................................................................AGTTCATGACCAGAGGAAGCATCTATACTTTTTTGCACAAGCAAAGAGGTGCTTTTAAGCTTCCTACTCTCCTGAAGGTTGCAATTGATGTTTCTAAGGGAATGAGTTATCTGCACCAAAATAACATAATTCATCGTGATCTGAAGACTGCCAATCTTCTGATGGATGAACATGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTAAGGTTGGTGACTTTGGGGTTGCTAGAGTGCAGACTCAAACTGGGGTGATGACAGCTGAAACTGGAACGTATAGATGGATGGCTCCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGAACACAAACCGTATGACCACAAGGCTGATGTTTTCAGCTTTGGTATAGTGCTGTGGGAACTTCTGACTGGAGAA....................................................................................ATTCCATATGCATACTTAACACCATTACAAGCAGCAATAGGTGTGGTGCAACAG...........................................................................................GGTCTACGGCCAACAATTCCTAAGAGCACTCATCCAAAGCTTGCTGAACTTCTTGAAAAATGCTGGCAGCAAGACCCAACACAGAGACCAGATTTCTCGGAGATTTTGGATATTCTGAAGCAACTAACAAAGGAG..................................................................................GTTGGAGATGATGGAGAGGACAGACACAAGGACAAATCAATCGGTGGCTTTTTCTCGTCTCTTAGAAAGGGCAATCACTGAGAATTTACTAAAAGAGAGGAGGTTGATCGGCCTTCAGCTTTTGTCTCGGTGTACAGATTCTCTGATATCCAAACTTGATCTGATTAGTTTTTGAAAATCATGGTTTTTATCTAATGTCGCTTGGCATTCATTTACTATTCCTAATTTAGTCAGGGGTGCAAGCTGGTGAGTAAAGCTTTGGCAACTCTCTACAGAATAACTGTGAATTTGCGCAAGTTCTAATTCCTAACCCTTTTTTGTACCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566924" ref_strand="+" ref_description="SGN-U566924 Tomato 200607#2 [46 ESTs aligned] (*GB) gi|71081904|gb|AAZ23261.1| (e_value=8e-78) senescence-associated protein [Nicotiana tabacum]; (*ATH) AT4G35770.1 (e_value=1e-41) | Symbol: None | senescence-associated protein (SEN1), identical to senescence-associated protein GI:1046270 from (Arabidopsis thaliana) | chr4:16944946-16946096 FORWARD | Aliases: F4B14.3; (*SWP) sp|P27626|DIN1_RAPSA (e_value=2e-40) Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1; ">
      <seq>gatacacttgaaaaaaaccctcctgtcttcacccataaatatcaatctccctttcatttctcaccatcaaacaaaataattgaacaacttccacaggaacaaacaatcatgagaactatttcccttcattcaacctcattttcacttgttgagttccatggtaccaagaatttggcacaaagcaggatcaatagatcggtttcgttgattccaatggcgaggtctcaatttcagcctaaaataagacgtgacattggtactagcaatagaaatccaagttttagctggatggcaacagttggagagaaagtgcacaactccacggttcctacttctgttcctgttcgagttgcacttgaattgcttcaagctggccatcgttatttagatgtcagaactactgaggagtacaatgatgggcatgctgctggagccataaacattccttacatgcttagaattggctcagggatgataaagaaccccaatttcttggaggaagtgttggaacaattcgggaaggatgatgagattatagttggatgccagttgggtaagagatcatttatggctgcaactgaacttcttgctgctggatttactggggtgactgacattgctggtggatatgctgcgtggacagagagtggacttccgattgagtcttgaaggccttttatttactcacatataaaaagggtagatttttaaataagtacacaccagtagtcaacatggcgaaatcaattccctttcttcacatcaaaaattagaaggagcaacttgcaaaatctcttgtacagtaatttatagcaggtgatgatgatattcgatgtgggagaatctgtattgcaagaaatatgtgtaaatattgttctcctaattctgctataataaataatatttgcctgaaaggcctctcatctgctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="52788" stop="49529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52489" g_stop="52308" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52307" i_stop="52204" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.429" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52203" g_stop="52102" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="284" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52101" i_stop="52016" i_length="86">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52015" g_stop="51905" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="395" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51904" i_stop="51766" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51765" g_stop="51692" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="469" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51691" i_stop="50578" i_length="1114">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50577" g_stop="50507" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="540" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50506" i_stop="50400" i_length="107">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50399" g_stop="50346" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="594" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50345" i_stop="50169" i_length="177">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50168" g_stop="49826" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="937" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U566924" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>937</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52489" e_stop="52308"/>
          <exon e_start="52203" e_stop="52102"/>
          <exon e_start="52015" e_stop="51905"/>
          <exon e_start="51765" e_stop="51692"/>
          <exon e_start="50577" e_stop="50507"/>
          <exon e_start="50399" e_stop="50346"/>
          <exon e_start="50168" e_stop="49826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTTGAAAAAAACCCTCCTGTCTTCACCCATAAATATCAATCTCCCTTTCATTTCTCACCATCAAACAAAATAATTGAACAACTTCCACAGGAACAAACAATCATGAGAACTATTTCCCTTCATTCAACCTCATTTTCACTTGTTGAGTTCCATGGTACCAAGAATTTGGCACAAAGGTATATTTATATGCATTGAAAATTTTCGATTGAGTTCATTTTTTCTTCTTCTTCCAATGGGTGTTTCTTTTAACTCTGTTTTGTGATTTGAATGCTACTAGCAGCAGGATCAATAGATCGGTTTCGTTGATTCCAATGGCGAGGTCTCAATTTCAGCCTAAAATAAGACGTGACATTGGTACTAGCAATAGAAATCCAAGTTTTAGGTGGGTTTTTGAGTATATCCCCTGTTTTTGTGTTATTTCTCTGTTTTTGGCTTTAAAATGGGTGTTTGAACAAACAATTTTTGTAGCTGGATGGCAACAGTTGGAGAGAAAGTGCACAACTCCACGGTTCCTACTTCTGTTCCTGTTCGAGTTGCACTTGAATTGCTTCAAGCTGGCCATCGTTATTTAGATGTCAGGTAATGCAATTTATGTAAACAAAAAATATGCCCTTTAAATATTTATACTATTTCTTGCAATATATGATCAGAACAATTTAATTTTTTATCAATCGTTTGTATGGAAGATTCAATATTTTAAACATTTTTTTTTGCGCAGAACTACTGAGGAGTACAATGATGGGCATGCTGCTGGAGCCATAAACATTCCTTACATGCTTAGAATTGGCTCAGGTTTGATTATTAGTAATTTAATACTACTCCCTTTTTCTGAGTACTCGATGTTAACAATATTTAAGTTTTTCAAATATTTTTTTTACCAGTGTCCTCCTTATGATGCATGATAGATTTTTTTTTAAGTGTCATCGAGTTCTCAAAAATTGAAATGGTGGCAATTATTATGCCTGGTTTCTACTTTCTGGGTGTCGAATGTTTACATGTAAAATGTATTTTGTTCATCTTACTTCTCTTTCAATTTTCTTACTTGCTCATAAACGGAGGGTTATTTAATTTTATACACATGACTCTGTTACAATTCTCTGGTACCATTTTTATTTCTTTGAAAATATTTTGGCAACTTAGCAAACATAAATCATACAGAACTAGAGTTTTAGACCAACTTAAAGAACACTGTATTGTTTGGTGGTGTACATAAGAGTGATTTTTGGTTAGTCTTTGAAGATAAGTTTTTCAAGTATCTTTTTTCCTTCTTACGAAAATGATTATTTTTTTTTCGAGTGAATTGCATGTTTGAACACAATTTTAACTTTCAAATAACCCTTTTTTAACTTCAACTTTAGATACTATATTTTCTAGACCAGAATTTGCATGAAATGTGTTCAATTATGAACAAAGAGTACTCTCTGAAGTAGTACTCTGAAGTTTTATTGTTTTTCACGGTGATGTTTTATGCTACTGCATCAAGTTTCTGTTCTTCTTTGAGTGGTATATTAGTTTCCCACATCGGAACCCAAAGCAGGACTCGTACGCAAGTGTTGTGTAATAAAAGCCAAACACTTACTCAGTAATAGGCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATTGGCTCACACGATATTAACTTAATTTTTTACGGGGAAGGGTCCATTAAGGTAGCTTGCTGCCTGGGCTCTTGCGCGTCGCCCATGCGTTGCACTGCTGCACGGGCCTGGCGCACCCCACCAATTCAAGTTCAACTTTCTGATTGTGTTTTTCATAGTTTTTCTGTACTTTTTCTACCCTAGATGCATAATCCCAGCAGTAACAGTTTCAAGCGTTTTTGCTCTGTATATGTGGTGCAGGGATGATAAAGAACCCCAATTTCTTGGAGGAAGTGTTGGAACAATTCGGGAAGGATGATGAGATTATAGTTGTAAGTCAGCAAAACTAGTAGTATATGATTTTTATTTCAAGCTTCAATTTCATGAGGTAAGGAATTATCAATTTCCTTTCTGCCTTTTTGTTGACTTGGCATTACAGGGATGCCAGTTGGGTAAGAGATCATTTATGGCTGCAACTGAACTTCTTGCTGCTGTAAGTCCCTTGCATAATACAGCTTTAGAATAGAAAATTCTTGAAAATGAAAGTATAATATAAATAAATCCCAAAGTAATTTCGGCCAAAAATTAAGAGTCTTAGAACGTGTAAAAGATTGAATTGTGATGTAATAAATCGACACATCTCATTAACTGCCTGCTATATATTGTGCAGGGATTTACTGGGGTGACTGACATTGCTGGTGGATATGCTGCGTGGACAGAGAGTGGACTTCCGATTGAGTCTTGAAGGCCTTTTATTTACTCACATATAAAAAGGGTAGATTTTTAAATAAGTACACACCAGTAGTCAACATGGCGAAATCAATTCCCTTTCTTCACATCAAAAATTAGAAGGAGCAACTTGCAAAATCTCTTGTACAGTAATTTATAGCAGGTGATGATGATATTCGATGTGGGAGAATCTGTATTGCAAGAAATATGTGTAAATATTGTTCTCCTAATTCTGCTATAATAAATAATATTTGCCTGAAAGGCCTCTCATCTGCTCATAACTT</genome_strand>
        <mrna_strand>GATACACTTGAAAAAAACCCTCCTGTCTTCACCCATAAATATCAATCTCCCTTTCATTTCTCACCATCAAACAAAATAATTGAACAACTTCCACAGGAACAAACAATCATGAGAACTATTTCCCTTCATTCAACCTCATTTTCACTTGTTGAGTTCCATGGTACCAAGAATTTGGCACAAAG........................................................................................................CAGGATCAATAGATCGGTTTCGTTGATTCCAATGGCGAGGTCTCAATTTCAGCCTAAAATAAGACGTGACATTGGTACTAGCAATAGAAATCCAAGTTTTAG......................................................................................CTGGATGGCAACAGTTGGAGAGAAAGTGCACAACTCCACGGTTCCTACTTCTGTTCCTGTTCGAGTTGCACTTGAATTGCTTCAAGCTGGCCATCGTTATTTAGATGTCAG...........................................................................................................................................AACTACTGAGGAGTACAATGATGGGCATGCTGCTGGAGCCATAAACATTCCTTACATGCTTAGAATTGGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATAAAGAACCCCAATTTCTTGGAGGAAGTGTTGGAACAATTCGGGAAGGATGATGAGATTATAGTT...........................................................................................................GGATGCCAGTTGGGTAAGAGATCATTTATGGCTGCAACTGAACTTCTTGCTGCT.................................................................................................................................................................................GGATTTACTGGGGTGACTGACATTGCTGGTGGATATGCTGCGTGGACAGAGAGTGGACTTCCGATTGAGTCTTGAAGGCCTTTTATTTACTCACATATAAAAAGGGTAGATTTTTAAATAAGTACACACCAGTAGTCAACATGGCGAAATCAATTCCCTTTCTTCACATCAAAAATTAGAAGGAGCAACTTGCAAAATCTCTTGTACAGTAATTTATAGCAGGTGATGATGATATTCGATGTGGGAGAATCTGTATTGCAAGAAATATGTGTAAATATTGTTCTCCTAATTCTGCTATAATAAATAATATTTGCCTGAAAGGCCTCTCATCTGCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U576545" ref_strand="+" ref_description="SGN-U576545 Tomato 200607#2 [32 ESTs aligned] (*GB) gi|147782976|emb|CAN72958.1| (e_value=1e-103) hypothetical; (*ATH) AT4G35760.1 (e_value=4e-91) | Symbol: None | expressed protein | chr4:16942326-16944665 REVERSE | Aliases: F4B14.2; ">
      <seq>ggttcaaaggcttactaaacagtttagcaaaggatgttttgtgtaaaataagccagagcccaaaatttgttccggtccaaatccccgtattcagtaacgagcaacattttctgcacttcaaccaacgaccaacaaccaccgcagagctagtcaaaccaccactactcacggccggtggtatccaattctgagctgatggccagtatcatcggcgtatcatcttctccttttccaacccagacctctcatcttcttccatctcgctctaattccatatcttctctcgttcaactcaagagagattcggttcggcgactgttgttgcttcgagtgaactgctcatcaaggcaggtcggagatgcagagacagaatcagaatctaaggtggtattgccagatactcctgctgatacaggcatttcagcatacaattggtgtgcagctcttggtgggattgggtttcttgagacttcttacttgacgttcctcaagttaactaactctgcagcattttgtcctgttggtgatggtgccagctgtggcgacatcctcaacagcagctactcagctgtatttggtgttcctcttccattaattggtatggttgcttatggagtagttgcaatacttgggatacaattgggccagaaaagcaggcctcttggaactggtgaagctaatgggcgtttggttttacttggaacaactacttccatggcagctgccagtgcatacttcttgtacatcctaagcacaaagttcactggggaattttgtccgtactgtttagcttctgtcttattgtcatttagtttgttcatcagcagtatgaagggtttgggctttcaagaggtgcaaaaagatgtgggtatacagttacttatagttctcttggtggtttctaccctaaacaattcatacagtgactctcagcctacaaacacaggttctgctctggctgagatggaatactttacagcagagatcacatcagagtctacaccttttgctatatccctagcgaaacacctgcattcaattggggcaaaaatgtatggggctttctggtgttctcactgccaggaacaaaagcagatgtttggacgagaagcagcaaagttactagactatgtagaatgctttccttatggacttaagaggggaatttctatgatcaatgcatgtcaagaagcaaaactcgaagggttccctacatgggttatcaatggggaggttcttagcggagagaagaagctttcagagctggctgcactgtctggtttcgatatgaaagaagaacttactgaggctaaatgagctctgttgatcaacagtcacatactcttaggatatctaagtttatgaattcttataactgccctctggtatttacttagtttcataatgtaattaccttcttatgttagtaaaactgaataggtagtatgataaagtgaaggatccgagtggatcatcttctgagtaaatatatcaagcaaatcctattacccccaatttatggggaatgttttcttctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="57773" stop="63107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58072" g_stop="58368" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58369" i_stop="58452" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58453" g_stop="58732" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="577" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58733" i_stop="60558" i_length="1826">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60559" g_stop="60815" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="834" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60816" i_stop="60897" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60898" g_stop="61010" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="947" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61011" i_stop="61401" i_length="391">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61402" g_stop="61549" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="1095" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61550" i_stop="62250" i_length="701">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62251" g_stop="62388" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1233" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62389" i_stop="62518" i_length="130">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62519" g_stop="62801" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1234" r_stop="1516" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1538" polyA_stop="1558"/>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U576545" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1516</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58072" e_stop="58368"/>
          <exon e_start="58453" e_stop="58732"/>
          <exon e_start="60559" e_stop="60815"/>
          <exon e_start="60898" e_stop="61010"/>
          <exon e_start="61402" e_stop="61549"/>
          <exon e_start="62251" e_stop="62388"/>
          <exon e_start="62519" e_stop="62801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAAAGGCTTACTAAACAGTTTAGCAAAGGATGTTTTGTGTAAAATAAGCCAGAGCCCAAAATTTGTTCCGGTCCAAATCCCCGTATTCAGTAACGAGCAACATTTTCTGCACTTCAACCAACGACCAACAACCACCGCAGAGCTAGTCAAACCACCACTACTCACGGCCGGTGGTATCCAATTCTGAGCTGATGGCCAGTATCATCGGCGTATCATCTTCTCCTTTTCCAACCCAGACCTCTCATCTTCTTCCATCTCGCTCTAATTCCATATCTTCTCTCGTTCAACTCAAGGTACAGTTACTCTTCATCTCTTCAAGATTCACTTTTTTTTTCTTCTTCTCTAATGTTGACATTTTTATTGCTTGATTCTTAAAGAGAGATTCGGTTCGGCGACTGTTGTTGCTTCGAGTGAACTGCTCATCAAGGCAGGTCGGAGATGCAGAGACAGAATCAGAATCTAAGGTGGTATTGCCAGATACTCCTGCTGATACAGGCATTTCAGCATACAATTGGTGTGCAGCTCTTGGTGGGATTGGGTTTCTTGAGACTTCTTACTTGACGTTCCTCAAGTTAACTAACTCTGCAGCATTTTGTCCTGTTGGTGATGGTGCCAGCTGTGGCGACATCCTCAACAGCAGCTACTCAGCTGTATTTGGTAATATCCCGTGCTATTTTTAGGAAATCTGGACTTTAAAAGAACTTTCTGCTTTAGGACTATCTTTGTAACCTTCTATAAGTATATATCTAAAATTTTTGTTTAAAAGAATAATATGAAGATATTAACACATCTGTACAAGTAAAATTGGTGGGAACCTGAAGAAGTGATTGGATACAATTTCTATTTTAGGGTTTTGGCAAAGTCTAACCAATTCACGTCTCTCTTTTATGACTAGCCTCTTGTTTGATTCTCTTTATGAATTATGTACGTACCAGACATAATAATCTTTATCCCTATTACCTCAATTTAGTGTCTTATTTTGACTAAGAAGTTGAAGAAGCCCTTTTTAAGATTTTAGTAAAGAACACATAATTCTACCTTCTTGAGGTAGGAGAAAGATCTGATGTACATGGTACGCCACCCTCCCCAGACCGCACTTGGGATTACATTAGGTAATGTTGTTGTATAGAAGACCATGTAATGCAATAGGATTGCTTTATTTGTTTGTAAGAAAATATTGTTTGGAAGAATAAATAGAGGAATACATCTATTTATGTAGTATAATATCTCTGAAAACATATCCTTTGTAATGAAACATACAAAGATGACAATGGTAAAGCTTCTAATTTTAAATGGTGATAGTAAATTTGTTGTATTGCAAGTAATTGTAGTAAATTAATTAGTTCTATATGGGTTGTCAAGCTAGCGTAACCTTCCTCCTTTATCCGGGCCTGCAATTAGCTATAGAGCAAGCTCGCACAATCAGAGTTTCCCCGGGGATAACCCCATCCCAGTACTACTCCAGCCAAAGCATGTTAACTTTGCAGTTCATATAGCTGACCCAACTAACTAGGAAAACATAGATGTTGTTATTGTTGTACATGGAGAGAGTAAGTTATGCTTGTTTAAAACATTAATTTAGGACATAATATGAAGTTGGTTTCAAGAAACCTTACTAAACACAAGATGTTATTAGCTGAAGAAATCTATTGTTAATTAGACCAGCATATGTTTGATAATAGCCTTTTTTTAAGTTACATGATCTTCGGTTGTCTTCAAATGAGACTCTGTAAGGTAGATAGTTTGAATTATCAATGAATGGGATGCCTAGAAATGCAATCGGACTGAGAAACCTGTGCTGTACCCAATTCGCCTCCATAAGGTCACCGTCATTTCCACCCACTCCAATTCCAGTACTCATTGATGAATCAAAGGACTTTTCCCTATCTCAGTGTTACAATAAGCCGGCACACATTGATTGCAGTGAGGTTACAAAACTCCAGTGTGGAGCCAGAATTAGAAAAACCAATATCAATTGGTCCAACATACTTGACAAGAAGATGTTGACAGTAAACATTGCTGTAAGTTGCACCCATTTTATCTCATAGTGGTGAGGCCTCAACATAAACCAATTCCTGGAAGTAGCAACACCTAATCCTCGTACTGATTGGGCTCTAATTGCTCGTAAATCTCTCATATACTTTATGTGCATAGTGTGCATAACACACAGGTGAATTGTTCGACCTTTATCGTGTCAAAAAAAAAAACACTGGGGTGATTTGTTCTTCTAACAAAATGTTATAACTCCTTTTGATGGTAATCATACATATCACAGAGGAGGTAGCACATTATAATATATAGTAGTGTATTTTGTTGTCAGACTTAATAACTAATGCAGTGCTAATTTTGTTACATTGTAAGCTGTATTGTTTGATCTGAAAGACACAGATTGGAAAATCATTAAATTGAAGGCAGTATGTCACTTAAATTGCAGGTAATATGTTTGGAAAAAGATTCAGTTTTCATCCTTTTTCATTTGCCAGGTGTTCCTCTTCCATTAATTGGTATGGTTGCTTATGGAGTAGTTGCAATACTTGGGATACAATTGGGCCAGAAAAGCAGGCCTCTTGGAACTGGTGAAGCTAATGGGCGTTTGGTTTTACTTGGAACAACTACTTCCATGGCAGCTGCCAGTGCATACTTCTTGTACATCCTAAGCACAAAGTTCACTGGGGAATTTTGTCCGTACTGTTTAGCTTCTGTCTTATTGTCATTTAGTTTGTTCATCAGCAGTATGAAGGTTATCTCTACTACAGACTTGTTTGTTTAGCTTCTATTGCTATATGCAATGGTAGTGACAAAGATATTTCTTTTATATACAGGGTTTGGGCTTTCAAGAGGTGCAAAAAGATGTGGGTATACAGTTACTTATAGTTCTCTTGGTGGTTTCTACCCTAAACAATTCATACAGTGACTCTCAGCCTACAAACACAGGGTAAACAATCCGTACACATTTACACATTGTAGGATGATATTAGGCAAAGTGTCTTTGGATTGAAAGGACAATAGGCAAGAGTTTCTTTTTTTGCATTAAGTAGTGAATGTTTGATTGGCATTGATTAAAGAGATAATCACATTAACTTGTATAAAAACTTTCCATGAATTATTTAAGCTAGAATCTTAAAGCAAGTAAGAGAAGCTTGTTTCAGTTTCTAGATTTAGCAGCAACAAGATATCTTGGTCATTTTAAGATAGAAAAGCTCTTGATGTGCAGTCATTTAGTCACAGGTAAAACTCTAGATCATCTGAAATGTATAGTTGGTGAAAAGATCATGCACGTTATTCAAGAGAACAATTACTCAAAATCCTTTTCCCATCTTTTGCAGTTCTGCTCTGGCTGAGATGGAATACTTTACAGCAGAGATCACATCAGAGTCTACACCTTTTGCTATATCCCTAGCGAAACACCTGCATTCAATTGGGGCAAAAATGTATGGGGCTTTCTGGTGTTCTCACTGCCAGGAACAAAAGCAGGTTCTCTTTCTTTTGCAAATGTGCTTTCTTAGTACTGCATTTTGATGGGTTTCTCAAAAAAAAAAAAAAAACTGCATATGAAAATGATGTTTTTTCTAAAATTATTTCCTTTTTGGTTGCCTCAATGGCATAGTGACATCATTTCATTAGGCAAAAAAAAAGATTCAGAGAAAGAAATACTTGCATACATAGAAAATGGGAAAGTAAAATCTTTCCCCATTATCAAATCTGACATGATGTAGGTAGGGTGAAGCGTGGATGTTGATTGGACTCCAGCCACGTTGTCTGATTGCTACATTCCTAAAGTAACATTCTATAAGGGAAAAGACAAAACATGATATGGGTAGGGAAGAATATGAATATGCATCAACTACTATTGGGTTGAATATTAACGTCTTCCGTAAAATAAGTAAGAGCATCATTAAAGGGAAAAAGAGAGACCCTTATATTTCCTTCTTTCGTATACTGGTGCTGGAATTTGGCTAAGAGCTTCTGTGGATTAATCTTTAAAGGTCAGAAGCAGATACTCAGAGTTCTGACCCCAACTGTTTGTCAATATTGCAACTAAACATTAAGAATATAAAAAATGGCCTTAAAGATCCCACTAGAAATTCTGATTTGCATTATGCACTTAGCAGTATAGGTAAGAGTTGGCTTGTATTCTGTACTAAATTGGTATATTCTTGTGTCACTGCAACAAGATGTTTGGACGAGAAGCAGCAAAGTTACTAGACTATGTAGAATGCTTTCCTTATGGACTTAAGAGGGGAATTTCTATGATCAATGCATGTCAAGAAGCAAAACTCGAAGGGTTCCCTACATGGGTTATCAATGGGGAGGTGAGCAAGAACCTTCTTCATGCTAGAAAAATATTTTGTAACCTATACAAAAGGCACCAGTCATTCACACGTTCGATAAGAAAATGAACATCTTGCTGTGAGGGACCTTATAACTATAATATTCTGGCAGGTTCTTAGCGGAGAGAAGAAGCTTTCAGAGCTGGCTGCACTGTCTGGTTTCGATATGAAAGAAGAACTTACTGAGGCTAAATGAGCTCTGTTGATCAACAGTCACATACTCTTAGGATATCTAAGTTTATGAATTCTTATAACTGCCCTCTGGTATTTACTTAGTTTCATAATGTAATTACCTTCTTATGTTAGTAAAACTGAATAGGTAGTATGATAAAGTGAAGGATCCGAGTGGATCATCTTCTGAGTAAATATATCAAGCAAATCCTATTACCCACAAT</genome_strand>
        <mrna_strand>GGTTCAAAGGCTTACTAAACAGTTTAGCAAAGGATGTTTTGTGTAAAATAAGCCAGAGCCCAAAATTTGTTCCGGTCCAAATCCCCGTATTCAGTAACGAGCAACATTTTCTGCACTTCAACCAACGACCAACAACCACCGCAGAGCTAGTCAAACCACCACTACTCACGGCCGGTGGTATCCAATTCTGAGCTGATGGCCAGTATCATCGGCGTATCATCTTCTCCTTTTCCAACCCAGACCTCTCATCTTCTTCCATCTCGCTCTAATTCCATATCTTCTCTCGTTCAACTCAAG....................................................................................AGAGATTCGGTTCGGCGACTGTTGTTGCTTCGAGTGAACTGCTCATCAAGGCAGGTCGGAGATGCAGAGACAGAATCAGAATCTAAGGTGGTATTGCCAGATACTCCTGCTGATACAGGCATTTCAGCATACAATTGGTGTGCAGCTCTTGGTGGGATTGGGTTTCTTGAGACTTCTTACTTGACGTTCCTCAAGTTAACTAACTCTGCAGCATTTTGTCCTGTTGGTGATGGTGCCAGCTGTGGCGACATCCTCAACAGCAGCTACTCAGCTGTATTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCCTCTTCCATTAATTGGTATGGTTGCTTATGGAGTAGTTGCAATACTTGGGATACAATTGGGCCAGAAAAGCAGGCCTCTTGGAACTGGTGAAGCTAATGGGCGTTTGGTTTTACTTGGAACAACTACTTCCATGGCAGCTGCCAGTGCATACTTCTTGTACATCCTAAGCACAAAGTTCACTGGGGAATTTTGTCCGTACTGTTTAGCTTCTGTCTTATTGTCATTTAGTTTGTTCATCAGCAGTATGAAG..................................................................................GGTTTGGGCTTTCAAGAGGTGCAAAAAGATGTGGGTATACAGTTACTTATAGTTCTCTTGGTGGTTTCTACCCTAAACAATTCATACAGTGACTCTCAGCCTACAAACACAGG.......................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTCTGGCTGAGATGGAATACTTTACAGCAGAGATCACATCAGAGTCTACACCTTTTGCTATATCCCTAGCGAAACACCTGCATTCAATTGGGGCAAAAATGTATGGGGCTTTCTGGTGTTCTCACTGCCAGGAACAAAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGGACGAGAAGCAGCAAAGTTACTAGACTATGTAGAATGCTTTCCTTATGGACTTAAGAGGGGAATTTCTATGATCAATGCATGTCAAGAAGCAAAACTCGAAGGGTTCCCTACATGGGTTATCAATGGGGAG..................................................................................................................................GTTCTTAGCGGAGAGAAGAAGCTTTCAGAGCTGGCTGCACTGTCTGGTTTCGATATGAAAGAAGAACTTACTGAGGCTAAATGAGCTCTGTTGATCAACAGTCACATACTCTTAGGATATCTAAGTTTATGAATTCTTATAACTGCCCTCTGGTATTTACTTAGTTTCATAATGTAATTACCTTCTTATGTTAGTAAAACTGAATAGGTAGTATGATAAAGTGAAGGATCCGAGTGGATCATCTTCTGAGTAAATATATCAAGCAAATCCTATTACCCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572091" ref_strand="+" ref_description="SGN-U572091 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157340292|emb|CAO45969.1| (e_value=7e-39) unnamed; (*ATH) AT5G22130.1 (e_value=5e-56)  Symbol: None | mannosyltransferase family protein, similar to mannosyltransferase from Rattus norvegicus (GI:11414877), Homo sapiens (GI:11414879); contains Pfam profile PF05007: Mannosyltransferase (PIG-M) | chr5:7337336-7340015 REVERSE | Aliases: ... ; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=5e-55) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM; ">
      <seq>ctctgttgttttgggtattgagcgatcagttcctgaatgatggtgactgtaaatctgaagtcgctgctgatattctcagcctttcttagggtgtttttgataatctatggagaatggcaagatacccatatggaggttcgatacacagatgtggactatcttgttttctcagatgcagctgctttagttgctgccggaaaatccccttatcaaagatctacatatcgttactctcccttgattgcttttcttcttgtgcccaattctttcgttcatccttcttggggaaagtttatcttctccgcttcagatatgcttaatgaaacttacattgagttcgtgcggcagatcttctcgtgggatttcttatcaacgccattctaaagctaagaggggtgcctgagaaattatgcacctattcggtgatggtatggcttttgaatccatttacctttaccattggaactcgtgggaattgtgagcccatcatctgtgccataatcctttggattattctatgtctaatgaatggtaaaactttcagtaccttctaattacatttaatatagttatattgagaacttactcctaaatttttctttttcaatgtatagtttatttccctactgctattttctctgttattatctctttcaaaatggttcctgtctccttaatctaccttacaatattattgggggtaatgtaaatgactgtaaagaggggggcagatggaaggggaagtattttagggggatcatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="63490" stop="65378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63790" g_stop="64099" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64100" i_stop="64624" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64625" g_stop="65078" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="765" r_length="455" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U572091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63790" e_stop="64099"/>
          <exon e_start="64625" e_stop="65078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAGGTGAGATTTTCCCTTTCTCTTCTCTTTTTCTTTTTTTCTTTCTTTGTCCCTTCAATTTTGTGGGTTCTTTTTATTCCCGTTGAATGATGAAGAAGTCTGAGCTTCACAATTTTCGTATGATTTGGGTTTATTATTTGTGAGAACAGACAGATACATGAAATCCTACTTTTGTATTAAGCTCTTGTTAGGTTCTAATTTCAAGACAACGCAAAGGTTCCATTTTTAATTGACTCATTTGGAATTCTTGTTTTTCCTCATACAAATGCTCCTTGTATATGGTTTCCAAGAGATTTTTGCATCTCTATCTGCTTAGGTTTCATTGGCAATCTTTGGGGTTGTTGTGGATGTATAACTAAAGACTGGATGAATTGTTGATTAGGGCATGAACTTGTAGATGATCAATCTAAGAGTAGACAAATAGCTTCTGAACTTGCACTCTTGTATGTGGGTTTATTGTCTCTTCTTATTGCAAAAAATGCATAATTGATATTCTTAGAAGACATCTTAATTATGTTTCCAAAACAGATATGCTTAATGAAACTTACATTGAGTTCGTGCGGCAGATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATGGTAAAACTTTCAGTACCTTCTAATTACATTTAATATAGTTATATTGAGAACTTACTCCTAAATTTTTCTTTTTCAATGTATAGTTTATTTCCCTACTGCTATTTTCTCTGTTATTATCTCTTTCAAAATGGTTCCTGTCTCCTTAATCTACCTTACAATATTATTGGGGGTAATGTAAATGACTGTAAAGAGGGGGGCAGATGGAAGGGGAAGTA-TTTAGGGGAATCATGATT</genome_strand>
        <mrna_strand>CTCTGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTTAATGAAACTTACATTGAGTTCGTGCGGCAGATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATGGTAAAACTTTCAGTACCTTCTAATTACATTTAATATAGTTATATTGAGAACTTACTCCTAAATTTTTCTTTTTCAATGTATAGTTTATTTCCCTACTGCTATTTTCTCTGTTATTATCTCTTTCAAAATGGTTCCTGTCTCCTTAATCTACCTTACAATATTATTGGGGGTAATGTAAATGACTGTAAAGAGGGGGGCAGATGGAAGGGGAAGTATTTTAGGGGGATCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572087" ref_strand="+" ref_description="SGN-U572087 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157340292|emb|CAO45969.1| (e_value=3e-167) unnamed; (*ATH) AT5G22130.1 (e_value=1e-157)  Symbol: None | mannosyltransferase family protein, similar to mannosyltransferase from Rattus norvegicus (GI:11414877), Homo sapiens (GI:11414879); contains Pfam profile PF05007: Mannosyltransferase (PIG-M) | chr5:7337336-7340015 REVERSE | Aliases: ... ; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=1e-156) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM; ">
      <seq>ggttgttttgggtattgagcgatcagttcctgaatgatggtgactgtaaatctgaagtcgctgctgatattctcagcctttcttagggtgtttttgataatctatggagaatggcaagatacccatatggaggttcgatacacagatgtggactatcttgttttctcagatgcagctgctttagttgctgccggaaaatccccttatcaaagatctacatatcgttactctcccttgattgcttttcttcttgtgcccaattctttcgttcatccttcttggggaaagtttatcttctccgcttcagatcttctcgtgggatttcttatcaacgccattctaaagctaagaggggtgcctgagaaattatgcacctattcggtgatggtatggcttttgaatccatttacctttaccattggaactcgtgggaattgtgagcccatcatctgtgccataatcctttggattattctatgtctaatgaatggtcgtttagtacaagctgcattttggtatgggcttgtcgtccacatgaggatctatccaataatttatgctcttccaatcattttagttcttgatcccttgttcttccagtatggtacaaaacctgctcttgtgaattggagttctagaaaaagtaagtcacagcagacttccagctgtaaaaagcttatggatccttgttgtatgtgcaactttttaacaagcctttttacctggaggaggataatgtttgggcttatttctggagctttgttctttctccttactgggattttcttctttttatatggctgcgatttcttgcatgaagcactgctctatcatctcacacgtacagaccctaggcacaatttctcaatttatttctaccatatatatctgcactatgaacatgaggtatctatcttggaaaagctcgtctcgtttctgcctcagattatggtgcagctagttcttgttttccgctttgcacaagattttccattttgcttctttgtgcagactgtggcatttgtcgcatttaacaaggttatgactgctcaatactttgtttggttcttctgtctcttgccactaatcctgccatggaccaacatgaagctcggaggaaaaggactggtctgcatcttgttgtggatggcagctcagggtcactggttattgtggggttatttgcttgaatttaaaggaaagaatgtctttcttcaactctgggtggcaggtttgctgttcttggctgcaaatactttcgttcttatcaatattattcagcaacacacatatagtcccgtcttccaacagtcatctcgtgcctcttcaaagaaacaagtcaaacagagatgaggaatcagatcatatacctcctaattcactgggggaggaattttcgagctagtagtgtatttagccatattcggtacttgtagagcctttcatcatcaggcaaagcacttggcttattcatagctccatgcttaaaaataccttcactaaagatgtagcaagagatcgttattttgaagttttggtcgttttgcttttagagcatacggaatgatagcaatttacaatttgtttgttgcatttggtataagtttaattcagttaacctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="63494" stop="67090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63793" g_stop="64099" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64100" i_stop="64662" i_length="563">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.085" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64663" g_stop="64845" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="490" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64846" i_stop="65561" i_length="716">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65562" g_stop="66109" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="1038" r_length="548" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66110" i_stop="66204" i_length="95">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.414" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66205" g_stop="66790" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1039" r_stop="1624" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U572087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63793" e_stop="64099"/>
          <exon e_start="64663" e_stop="64845"/>
          <exon e_start="65562" e_stop="66109"/>
          <exon e_start="66205" e_stop="66790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAGGTGAGATTTTCCCTTTCTCTTCTCTTTTTCTTTTTTTCTTTCTTTGTCCCTTCAATTTTGTGGGTTCTTTTTATTCCCGTTGAATGATGAAGAAGTCTGAGCTTCACAATTTTCGTATGATTTGGGTTTATTATTTGTGAGAACAGACAGATACATGAAATCCTACTTTTGTATTAAGCTCTTGTTAGGTTCTAATTTCAAGACAACGCAAAGGTTCCATTTTTAATTGACTCATTTGGAATTCTTGTTTTTCCTCATACAAATGCTCCTTGTATATGGTTTCCAAGAGATTTTTGCATCTCTATCTGCTTAGGTTTCATTGGCAATCTTTGGGGTTGTTGTGGATGTATAACTAAAGACTGGATGAATTGTTGATTAGGGCATGAACTTGTAGATGATCAATCTAAGAGTAGACAAATAGCTTCTGAACTTGCACTCTTGTATGTGGGTTTATTGTCTCTTCTTATTGCAAAAAATGCATAATTGATATTCTTAGAAGACATCTTAATTATGTTTCCAAAACAGATATGCTTAATGAAACTTACATTGAGTTCGTGCGGCAGATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATGGTAAAACTTTCAGTACCTTCTAATTACATTTAATATAGTTATATTGAGAACTTACTCCTAAATTTTTCTTTTTCAATGTATAGTTTATTTCCCTACTGCTATTTTCTCTGTTATTATCTCTTTCAAAATGGTTCCTGTCTCCTTAATCTACCTTACAATATTATTGGGGGTAATGTAAATGACTGTAAAGAGGGGGGCAGATGGAAGGGGAAGTATTTAGGGGAATCATGATTTAAGTGATGAAACTGTAAAAAAGAAGGTATTCTCATTGAACACCGATCAAGATTGAGTCTTTCTCCCACTCCTCCACAGGGTTAGGTGTATAGGCCCAACACAAAATTATCGGACAGTGAATGAGGTTTTAGCAACCAATCAATGTAAGCTGAATATTCATCTTTTACTTGATTTCTCAATAAAGCATGAAACAAGATTTGCCCTGAATCTACCTCTGTTTCTTTTCATAGTTATTATGCAATTTGAAGTTATAGTGAACCTTTAGTTTAAAGGGAAAGTAGAAACCGAGAATGTTAACTCTGGAACTTTATAGGGTTAAACAATAAACTCTTTTTAATTGAGAATTTTTCCAAGAATCCTCCGATATTTTGGGTCAGATAACTGTATTTCCACTTGGGTTAATGGGAACTGTGGTTTCATTTTTTCTTTGGAAGTTATAAATCTTGACGCTCTATTGATTTTGGTGATGTTTCCCTGATCAGGTCGTTTAGTACAAGCTGCATTTTGGTATGGGCTTGTCGTCCACATGAGGATCTATCCAATAATTTATGCTCTTCCAATCATTTTAGTTCTTGATCCCTTGTTCTTCCAGTATGGTACAAAACCTGCTCTTGTGAATTGGAGTTCTAGAAAAAGTAAGTCACAGCAGACTTCCAGCTGTAAAAAGCTTATGGATCCTTGTTGTATGTGCAACTTTTTAACAAGCCTTTTTACCTGGAGGAGGATAATGTTTGGGCTTATTTCTGGAGCTTTGTTCTTTCTCCTTACTGGGATTTTCTTCTTTTTATATGGCTGCGATTTCTTGCATGAAGCACTGCTCTATCATCTCACACGTACAGACCCTAGGCACAATTTCTCAATTTATTTCTACCATATATATCTGCACTATGAACATGAGTTATCTATCTTGGAAAAGCTCGTCTCGTTTCTGCCTCAGATTATGGTGCAGCTAGTTCTTGTTTTCCGCTTTGCACAAGATTTTCCATTTTGCTTCTTTGTGCAGACTGTGGCATTTGTCGCATTTAACAAGGTTTGTTGGCAAGGCTTGATTATTTTTTATGTTGAGAATCAGTGAATATTAGCTTGATTTTCCTTTAGCAAGATAACGTTCTTTTCCTCTGACAGGTTATGACTGCTCAATACTTTGTTTGGTTCTTCTGTCTCTTGCCACTAATCCTGCCATGGACCAACATGAAGCTCGGAGGAAAAGGACTGGTCTGCATCTTGTTGTGGATGGCAGCTCAGGGTCACTGGTTATTGTGGGGTTATTTGCTTGAATTTAAAGGAAAGAATGTCTTTCTTCAACTCTGGGTGGCAGGTTTGCTGTTCTTGGCTGCAAATACTTTCGTTCTTATCAATATTATTCAGCAACACACATATAGTCCCGTCTTCCAACAGTCATCTCGTGCCTCTTCAAAGAAACAAGTCAAACAGAGATGAGGAATCAGATCATATACCTCCTAATTCACTGGGGGAGGAATTTTCGAGCTAGTAGTGTATTTAGCCATATTCGGTACTTGTAGAGCCTTTCATCATCAGGCAAAGCACTTGGCTTATTCATAGCTCCATGCTTAAAAATACCTTCACTAAAGATGTAGCAAGAGATCGTTATTTTGAAGTTTTGGTCGTTTTGCTTTTAGAGCATACGGAATGATAGCAATTTACAATTTGTTTGTTGCATTTGGTATAAGTTTAATTCAGTTAACCTCTC</genome_strand>
        <mrna_strand>GGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTTAGTACAAGCTGCATTTTGGTATGGGCTTGTCGTCCACATGAGGATCTATCCAATAATTTATGCTCTTCCAATCATTTTAGTTCTTGATCCCTTGTTCTTCCAGTATGGTACAAAACCTGCTCTTGTGAATTGGAGTTCTAGAAAAAGTAAGTCACAGCAGACTTCCAGCTGTAAAAAGCTTATGGATCCTTGTTGTATGTGCAACTTTTTAACAAGCCTTTTTACCTGGAGGAGGATAATGTTTGGGCTTATTTCTGGAGCTTTGTTCTTTCTCCTTACTGGGATTTTCTTCTTTTTATATGGCTGCGATTTCTTGCATGAAGCACTGCTCTATCATCTCACACGTACAGACCCTAGGCACAATTTCTCAATTTATTTCTACCATATATATCTGCACTATGAACATGAGGTATCTATCTTGGAAAAGCTCGTCTCGTTTCTGCCTCAGATTATGGTGCAGCTAGTTCTTGTTTTCCGCTTTGCACAAGATTTTCCATTTTGCTTCTTTGTGCAGACTGTGGCATTTGTCGCATTTAACAAG...............................................................................................GTTATGACTGCTCAATACTTTGTTTGGTTCTTCTGTCTCTTGCCACTAATCCTGCCATGGACCAACATGAAGCTCGGAGGAAAAGGACTGGTCTGCATCTTGTTGTGGATGGCAGCTCAGGGTCACTGGTTATTGTGGGGTTATTTGCTTGAATTTAAAGGAAAGAATGTCTTTCTTCAACTCTGGGTGGCAGGTTTGCTGTTCTTGGCTGCAAATACTTTCGTTCTTATCAATATTATTCAGCAACACACATATAGTCCCGTCTTCCAACAGTCATCTCGTGCCTCTTCAAAGAAACAAGTCAAACAGAGATGAGGAATCAGATCATATACCTCCTAATTCACTGGGGGAGGAATTTTCGAGCTAGTAGTGTATTTAGCCATATTCGGTACTTGTAGAGCCTTTCATCATCAGGCAAAGCACTTGGCTTATTCATAGCTCCATGCTTAAAAATACCTTCACTAAAGATGTAGCAAGAGATCGTTATTTTGAAGTTTTGGTCGTTTTGCTTTTAGAGCATACGGAATGATAGCAATTTACAATTTGTTTGTTGCATTTGGTATAAGTTTAATTCAGTTAACCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U588405" ref_strand="+" ref_description="SGN-U588405 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157340292|emb|CAO45969.1| (e_value=1e-35) unnamed; (*ATH) AT5G22130.1 (e_value=6e-34)  Symbol: None | mannosyltransferase family protein, similar to mannosyltransferase from Rattus norvegicus (GI:11414877), Homo sapiens (GI:11414879); contains Pfam profile PF05007: Mannosyltransferase (PIG-M) | chr5:7337336-7340015 REVERSE | Aliases: ... ; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=5e-33) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM; ">
      <seq>tgctgatattctcagcctttcttagggtgtttttgataatctatggagaatggcaagatacccatatggaggttcgatacacagatgtggactatcttgttttctcagatgcagctgctttagttgctgccggaaaatccccttatcaaagatctacatatcgttactctcccttgattgcttttcttcttgtgcccaattctttcgttcatccttcttggggaaagtttatcttctccgcttcaggtgagattttccctttctcttctctttttctttttttctttctttgtcccttcaattttgtgggttctttttattcccgttgaatgatgaagaagtctgagcttcacaattttcgtatgatttgggtttattatttgtgagaacagacagatacatgaaatcctacttttgtattaagctcttgttaggttctaatttcaagacaacgcanaggttccatttttaattgactcatttggaattcttgtttttcctcatacaaatgctccttgtatatggtttccaagagatttttgcatctctatctgcttaggtttcattggcaatctttggngttgttgtgnatgtataactaaagactggatgaattgttgattanggcatgaacttgtanatgancaatctaanagtanacaaatagcttctgaacttgcactcntgnatgtgggtttantgnctcttcttantgnaaaaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="63554" stop="64879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63854" g_stop="64579" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U588405" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63854" e_stop="64579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAGGTGAGATTTTCCCTTTCTCTTCTCTTTTTCTTTTTTTCTTTCTTTGTCCCTTCAATTTTGTGGGTTCTTTTTATTCCCGTTGAATGATGAAGAAGTCTGAGCTTCACAATTTTCGTATGATTTGGGTTTATTATTTGTGAGAACAGACAGATACATGAAATCCTACTTTTGTATTAAGCTCTTGTTAGGTTCTAATTTCAAGACAACGCAAAGGTTCCATTTTTAATTGACTCATTTGGAATTCTTGTTTTTCCTCATACAAATGCTCCTTGTATATGGTTTCCAAGAGATTTTTGCATCTCTATCTGCTTAGGTTTCATTGGCAATCTTTGGGGTTGTTGTGGATGTATAACTAAAGACTGGATGAATTGTTGATTAGGGCATGAACTTGTAGATGATCAATCTAAGAGTAGACAAATAGCTTCTGAACTTGCACTCTTGTATGTGGGTTTATTGTCTCTTCTTATTGCAAAAAATGCA</genome_strand>
        <mrna_strand>TGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAGGTGAGATTTTCCCTTTCTCTTCTCTTTTTCTTTTTTTCTTTCTTTGTCCCTTCAATTTTGTGGGTTCTTTTTATTCCCGTTGAATGATGAAGAAGTCTGAGCTTCACAATTTTCGTATGATTTGGGTTTATTATTTGTGAGAACAGACAGATACATGAAATCCTACTTTTGTATTAAGCTCTTGTTAGGTTCTAATTTCAAGACAACGCANAGGTTCCATTTTTAATTGACTCATTTGGAATTCTTGTTTTTCCTCATACAAATGCTCCTTGTATATGGTTTCCAAGAGATTTTTGCATCTCTATCTGCTTAGGTTTCATTGGCAATCTTTGGNGTTGTTGTGNATGTATAACTAAAGACTGGATGAATTGTTGATTANGGCATGAACTTGTANATGANCAATCTAANAGTANACAAATAGCTTCTGAACTTGCACTCNTGNATGTGGGTTTANTGNCTCTTCTTANTGNAAAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580990" ref_strand="+" ref_description="SGN-U580990 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|157329547|emb|CAO40658.1| (e_value=6e-88) unnamed; (*ATH) AT4G35750.1 (e_value=2e-88)  Symbol: None | Rho-GTPase-activating protein-related, contains weak similarity to Rho-GTPase-activating protein 1 (GTPase-activating protein rhoOGAP) (Rho-related small GTPase protein activator) (CDC42 GTPase-activating protein) (p50-rhoGAP) (Swiss-... ; (*SWP) sp|Q7JUR6|GDAP2_DROME (e_value=9e-14) Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812; ">
      <seq>gggcgattggcggccaaatcggccgaattccatggggatccgatggcccatcttctcctttcctcattcactatataaatcctctccgcccttctttctcatatctcatcccacaacaaacgtagcgttttgcttttgcaacaatcgagattcaaaaaaccatgtttacagaagttgaacaacaacagcatatagagaaactcgaaatattcaagatccaaggcagagataaacgtggccgcaaaattttgcgcatcatcggaaaattctttcctgctagaaatctgagtgttgaagttgtgaacaagtatttagcggagaagatctttccggaacttgagaaaaggccgttcgccgtggtgtatgttcacaccgatgtggagaaaagcgagaatttccccggagtatcagctttacgatcgttctacgatgcgattccggtgaaagtccgagagaatctggaggctatttactttcttcaccctggtcttcaagccaggctcttccttgccacatttggtcgcttcatcttcagcggagggttatatgggaaattgaggtatgtgagcagggttgataatctgtgggagcatgtgaggaggaatgagattgggatgccagaatttgtgtacgatcatgatgaagatcttgagtaccgtccgatgatggactatggcctggagagtgatcatgccagggtctatggcgatgcgcctgccgtagactcacctgttacaatgtactccatgagatgcatctcataagataattggaagccttttgcagtcttttcggttcatagttagatgtgtaggaacctcatggctttcttttttcttcctccatctgatgcaatttttttgctctgtatatacgattagatggaggttagcaactagcaagcacttttttcttcttgttgttgttatatagtaatagtacaaaggtcatcaactttgaaagcaatgatgatttcctatctgaaaaatcctggaatgttgttatctttcttctggaagatgaatatatatacttttatgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="72319" stop="74156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72626" g_stop="72857" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="276" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72858" i_stop="72951" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72952" g_stop="73216" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="541" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73217" i_stop="73356" i_length="140">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73357" g_stop="73859" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="1044" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U580990" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1000</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72626" e_stop="72857"/>
          <exon e_start="72952" e_stop="73216"/>
          <exon e_start="73357" e_stop="73859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCATCTTCTCCTTTCCTCATTCACTATATAAATCCTCTCCGCCCTTCTTTCTCATATCTCATCCCACAACAAACGTAGCGTTTTGCTTTTGCAACAATCGAGATTCAAAAAACCATGTTTACAGAAGTTGAACAACAACAGCATATAGAGAAACTCGAAATATTCAAGATCCAAGGCAGAGATAAACGTGGCCGCAAAATTTTGCGCATCATCGGAAAATTCTTTCCTGGTAACCTATTTTTTTTTTATGTATCGTTTTCTTGATTATTCTTGTTGAGATTTTGGTCTGAATTGTGGATTTGTTTTTGATTGTGGATAATCAGCTAGAAATCTGAGTGTTGAAGTTGTGAACAAGTATTTAGCGGAGAAGATCTTTCCGGAACTTGAGAAAAGGCCGTTCGCCGTGGTGTATGTTCACACCGATGTGGAGAAAAGCGAGAATTTCCCCGGAGTATCAGCTTTACGATCGTTCTACGATGCGATTCCGGTGAAAGTCCGAGAGAATCTGGAGGCTATTTACTTTCTTCACCCTGGTCTTCAAGCCAGGCTCTTCCTTGCCACATTTGGTCGCTTCATCTTCAGCGGAGGGTAAGAATGTCAATTCCTAAGACACATTACATTTTTTTTGGAAACCTGGATCCAATTTTCAAACAAATAGTATATCTTTCTATAATATATTATCTGTGTATTGACAAGGAAGAGATCTAACTGGGAGTTACTGTGCACAGGTTATATGGGAAATTGAGGTATGTGAGCAGGGTTGATAATCTGTGGGAGCATGTGAGGAGGAATGAGATTGGGATGCCAGAATTTGTGTACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTGGAGAGTGATCATGCCAGGGTCTATGGCGATGCGCCTGCCGTAGACTCACCTGTTACAATGTACTCCATGAGATGCATCTCATAAGATAATTGGAAGCCTTTTGCAGTCTTTTCGGTTCATAGTTAGATGTGTAGGAACCTCATGGCTTTCTTTTTTCTTCCTCCATCTGATGCAATTTTTTTGCTCTGTATATACGATTAGATGGAGGTTAGCAACTAGCAAGCACTTTTTTCTTCTTGTTGTTGTTATATAGTAATAGTACAAAGGTCATCAACTTTGAAAGCAATGATGATTTCCTATCTGAAAAATCCTGGAATGTTGTTATCTTTCTTCTGGAAGATGAATATATATACTTTTATGAGGA</genome_strand>
        <mrna_strand>GGCCCATCTTCTCCTTTCCTCATTCACTATATAAATCCTCTCCGCCCTTCTTTCTCATATCTCATCCCACAACAAACGTAGCGTTTTGCTTTTGCAACAATCGAGATTCAAAAAACCATGTTTACAGAAGTTGAACAACAACAGCATATAGAGAAACTCGAAATATTCAAGATCCAAGGCAGAGATAAACGTGGCCGCAAAATTTTGCGCATCATCGGAAAATTCTTTCCTG..............................................................................................CTAGAAATCTGAGTGTTGAAGTTGTGAACAAGTATTTAGCGGAGAAGATCTTTCCGGAACTTGAGAAAAGGCCGTTCGCCGTGGTGTATGTTCACACCGATGTGGAGAAAAGCGAGAATTTCCCCGGAGTATCAGCTTTACGATCGTTCTACGATGCGATTCCGGTGAAAGTCCGAGAGAATCTGGAGGCTATTTACTTTCTTCACCCTGGTCTTCAAGCCAGGCTCTTCCTTGCCACATTTGGTCGCTTCATCTTCAGCGGAGG............................................................................................................................................GTTATATGGGAAATTGAGGTATGTGAGCAGGGTTGATAATCTGTGGGAGCATGTGAGGAGGAATGAGATTGGGATGCCAGAATTTGTGTACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTGGAGAGTGATCATGCCAGGGTCTATGGCGATGCGCCTGCCGTAGACTCACCTGTTACAATGTACTCCATGAGATGCATCTCATAAGATAATTGGAAGCCTTTTGCAGTCTTTTCGGTTCATAGTTAGATGTGTAGGAACCTCATGGCTTTCTTTTTTCTTCCTCCATCTGATGCAATTTTTTTGCTCTGTATATACGATTAGATGGAGGTTAGCAACTAGCAAGCACTTTTTTCTTCTTGTTGTTGTTATATAGTAATAGTACAAAGGTCATCAACTTTGAAAGCAATGATGATTTCCTATCTGAAAAATCCTGGAATGTTGTTATCTTTCTTCTGGAAGATGAATATATATACTTTTATGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566747" ref_strand="+" ref_description="SGN-U566747 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157336139|emb|CAO61969.1| (e_value=3e-31) unnamed; (*ATH) AT4G35800.1 (e_value=9e-55)  Symbol: None | DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1), nearly identical to P:P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} | chr4:16960661-16967896 REVERSE | Aliases: F4B14.7... ; (*SWP) sp|P18616|RPB1_ARATH (e_value=8e-54) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205; ">
      <seq>aagcctcctttctgaagctgagaggagacgaaagaagcgaaaaccagatctgtactgaacaagtgaaattgactgaagaatggagtcttaaaatagaaacttacatatagattaatcaaaaccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcatggtgagactacggagttgagcgatcctcgacttgggacgattgatcggaagatgaagtgtaagacgtgtatggcgaacatggctgatgtccggggcattttggtcaccttgagcttgcgaaacctatgtttcatataggttttatggaacctgttcttagtatccttcggtgtgtctgcttcaattgctccaaaattctggcggatgaggacaatcccaagttcaaacaagccatgagaatcaggaatcctaaaaacaggcttagaaagatgttggatgcttgcaagaacaaaacanaatgtgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="88920" stop="78704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88620" g_stop="88323" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88322" i_stop="88242" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88241" g_stop="88003" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="537" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88002" i_stop="79102" i_length="8901">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79101" g_stop="79004" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="635" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U566747" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88620" e_stop="88323"/>
          <exon e_start="88241" e_stop="88003"/>
          <exon e_start="79101" e_stop="79004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTCCTTTCTGAAGCTGAGAGGAGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTGTTGAATTCTCTAGGGTTTAAATTTGATTTAGTTTTTGTTTCTTCGTTTCCAGAGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAGGTACTTTGATTGACTTGAATTGAATTGTTAGGTTAAAAGTTTGTGTATAGTGAAATTGTCTTCTTCTTTTTTTTTTTTTGTTTAAGAAGGATTGAATTACTGATCATATATTTTTCACTACCTGGTTTGATGTTTGTGATATCAATTAAATTATAAGTGGGTAAACCATTAACATTTGGAGGTTTCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTACATTTCCTTACGGTTTCACGGTTTCACTGATGAATGAAGGGGAAAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTTTCTCTATGCATTATTTCTGATCCTGGAATTCAGACCCCATATGAGACCGGCGTCGTTGACCTCTCAGAAGTCGCAAACAAGCCTACTTACGTCATTCTTACTTTACATAGGTTAATTTGTAACGATTCAAAAAAAAAGAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGCCCTCTCTCTCTCACGCTTCTAAACTCCCCCTCTCACGTTCTCTATCTTCCTCACATTATTTCTGCCAAAATATCAATAATTTTCATGCTTGAAGAACTCACAAAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGGTGAGTGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTTGGATCCTTTCCCAAGAGGTTCCTTACGATTCAAACTATTCATCTCAAAACTAAGGTTGTTCCCCCGTTGCATGTCCCTGTCACTAGCTCCCTATGATCTTAGGTTGGGTATTCTTGTTGATAGAATTTAGGGATACTTGTTTGTGGTGATAATCTCGTTTCGAATATGTGTTCATGATGATGTGATTATATTTTATGTTTTTCGGAAAATATGAATGTATTTGTGCAAGATTTTGATCATGACTTTGAGTTTTTCTTTAGCATGTTAATAGATTTGAGATTACTCGTGTTTTATGTGCAATTAGAGGCTCTTAAAATCGTAATATTCGTAATATTCACATGGTTGAAAGGCTGTAAATTCTAGTCACAATAAATGATCAAATCATCCCCCTAAATTTGTCTTAAGAACATTAATGAATGTATAAGAAAAATGCTAAATTAACCCGTAAAAAAGATGTGAAAAATTATGGAGTAGTGTCCCAGAATCTGGAAATAAGTTTTAGACACATTCTGGAAAATTTGAGCAAAAAATGAATTAAAAAAAAATAGGTGAGGTCTTCAGGGATCGAACCCGAGACCTCACCAACACATGCCTTGATAAAATAATTAAAAAGGAGTGTTGAAGACGGGGCTCGAAATGGGGGCTGGGACCAGCGAAATTCGCCAAGAAAAGAAATAAAAAGGGGGCTGGGGGGAATCGAACTCGCGACCCCCAGCCACGCGCGAAAAAAAAAAGGGGGGATTAAAGAGGGAATGCTGGGGGCGGGGATCGAACCCGCGACCCCCAGCTATGCGCGGAACGAATTAAAAGGGAGAAAAGGAACGCGAGGCGTGGGAATCGATCCCACGACCTCAGCGCTGAAGGGAGGGCGCAAATAATAGCGTGAGGCTGTGGGGATTCGATCCCATGACCTCACTGCCACTCCCCTATTAAATAAAAAAAAATAGAGGGGCTGTGGGGGTTCGAACCCACCACCTCACAGCCTTCTCTTCAGCGAAAATGAGAGGAAAAATAAGGGGGCTGTGGGGGTTCGAACCCACAACCTCCCTATTCAAGCGAATTTAATTAAAAATAATAATAATAGTAAATTAAAATTCTAATTAAAGTTGGAAAATTAATTCTCTTATGTAAACATTGAGATTTAATTTAGAATTTTAATTAAAAATAGAACATTAATTCTTTTATGTAAATATTGAGATTTAAATTGGAATTCTAATTAAATTAGAAAATTATTCTTTCATGTAAATGATTGAAATTTAATTTAGAATTCTAATTAAAATAGAAAATTTATTATTTCACGAAAATGTTGAGACTTAACTTAGAGTTCTAAATTTATGAATATTAGAACTAAAATCAATGAAAAATATAAATGATATCCAAATAATTCAAAATTTGGGTTCTCGTGTCCAAACCTCCGTATTGATACATAAGTCATACGTGAGTGAAATATTCAAGAATAATGTCATCTACTTAGATCAAAAATCAAAGATCTTGGCATATATACAAGATACATAAGTCTTGTAATACATAATCTTAGAAAAACAAGAATTCACTTAACGAACTATAAATGAAGTCTCATGGCTTGTATGTATAGATATATAAGTTTAACATACGTTCAAGAATAAGTGAACCTAAGATATACGTAATGAAATGAAGAATGTGGTGACAATCATGATGTGAGGTTAATGCATATGATGAGAGCAATCTTAAATGAGCTTAAGTAAATGTTACCGATACATACTCACCAATGAGAGTGTAAGATAATGAAGAGACCAGTCTCTATGAATACTCTAATAAAAATATTGAGTTTAAAACACTTAATACTAATGATGAGATGAGAAATCATTTATTGAGCTATGATGTCTTCATACTAGAAGCAAACTTCTATGATGTATGAGTTGCATGTAATGGAACTTTATACCGAGCACCGATAGGCTAGCTATGAGTGGTGATGCCTTCTTTCGGGAAGGGCGGAGGTTCACGTAATTCTCATGAGATGAGACTGTCCGGCTTGCCGGGTATGGGTCTCCATACATCTCCTAGTCTTTGAACCTATATTGCCACTATAGGGATCTGGCGGGGTTAAATTCCCATATACGCTAGCATGTTATTGAATCGCTTTGGCCGGTGATTCCACCTCTTTTCGGTGTGGGGAAGACACTGGATTTCATGATGCTCACATGATCTATGTCGGTTAAAGTTAAAGTTCCCAATGAATGAATGAGGCCAGCCTCAAATGAATCATATAAAGAAATGAATGATACCGAAGGTGTTAGGATAGGATAATCAAGAGGTGAGCTAGATTCAGGTAATGACATTAGGTCATTCCTGATCATTGCACAGCAAACCCGATGAGAGTCTTAAACTACATCCTAGGTATAGCTGGTGTTCGCACTGGCCTATGAATGAATTGAAATGAAATACGAATGAATGAGTGAAGCAGACTCTGTGTTTGCTAAAGAAGGCTCCCTAGTTGAGGTCCCATATGTTGAGCCCTCATTTTGGAAAGTCTTAAAGTTAAGTCTATGATAATAAGGTCTCATGATATACGAATGAATAATATGAACGAAAGTATGTGTTATATGTTATGTGTTATATGAATATGTTATGTTTTGTGTGCTATACGATAATTATAATGATGCATGTCACTCTCATGGCATAACTTTCCCAATCTTAATTTGGCAAGTCCACTGACTTGACTTCCAAAAATCATGTTGTTAGGAAAGAGCTATTCTTCCTCATGCATGTCCCTGGTGTGTACTTGCATATACTCATACTTAGTACAAGTGTGTACTAATTCCATACGAACATCTACTTTTAGGTGCAGGCACAGGTGGACGCTAGAGCTACATGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTTGATGATGAACGATTACGAAATGTTAAGAATGTTCAGCAAGTATGATTAAAGAATCAAAAATTTCAAATTTTCCGCTAAAATTAATCTATGTAAAGTAAGAATGACGTAAGCAGGCTTGTCTGCGACCTCTGAGAGGTCAACGACGCCGGTCTCGTCTGGGGTCTAGATTCCGGTCGTGACATAATTTTAGCGAAAAATTTGAAACTTTTTGTTTCTTAACATGCTTACTAGACATTTTTTAGTATTTCGTAATCGTTCATCATAAACCATCTAACATTTAATTTTTTTTACTGAAAGAAATAATTCATTAAATATTAATTGTATATCGGCCAAAATAGCACCAATACAAAGTTTGAACCAAAACAGGAAGGAAACGCTAGTGGAACATGCTCCACTAGCTCAACTCTAAAACTACGCTAGAATGTAAAACAGTAACATCCTCGAAAGCATGAGGACCTACCAAACTCTGGATGAATGTTGACATCCGGATAGCTACAACAACGAACCTGTAGCTCTACCGTCCACCTGTGCCTGCACCTAAAAGTAGATGTTTGTATGGAATTAGTACACACTTGTACTAAGTATGGGTATATGCAAGCACACACCAGGGACACGCATGAGAAAGAATAGCTCTTTCCTAATGACATGATTTTTGGAAGTCAAGTTAGTGGACTTGCCAAATTGAGATTGGGAAAGTTATGCCACGAGAGTGAAATGGATCATTATAATTATCATATGGCACACAACACATAATATCTTCATATAACACATAACTTCTTTCATATTATTCATTCATATGTCATGAGACCTTGTTATCATGGACTTGACCTTAAGACTTTCCAAAATGAGGGCTCAACATATGGGACCTCAACTAGGGAGTCTTCTTTAGCAAACATAGAGTCTGCTTCATACATTCATACGTACCTCATTTCAGTTCATTCATAGGCCAGTGTGAACACCAGCTATACCTAAGATGTAGTTTAAGACTTTCATCGGGTTTGTTGTGTAATGATCAGGAATAACCTAATGTCATTACCTGAATCTAGCTCACCTCTTGATTATCCTATCCTAGCACCTTCGGTATCATTCATTTCTTTATATGACTCATTTAAGGTTGACCTCAATAATTCATTGGAAACTTTAACTTTAACCGACATAGATCATGTGAGCATCATAAAATTCAGTGTCTCCCCCACACCGAAAAGAGGTGGAATCACCGGCCAAAGTGACTCAATAACATGCTAGCGTATATGGGAATTTAACCTCGCCAGATCCCTATAGTGGCAGTATAGGTTCAAAGACTAGGAGATATATGGAGACCCATACTCGGCAAGTCGGATAGTCTTATCTCATGAGAGTTACGTAAACCTCCGCCCTTCCCGAAAGAAGGCATCACCGCTCATAGCTAGCCTATCGGTGCTCAGTATAAAGTTCCATTACATTCAACTCATACATCATGGAAGTTGACTTCTAGTATGAGGACATCATAGCTCATTAGATGATTTCTCATCTCATCAGTAGTATTAAGTGTTTTAAACTCAATATTTTCATTAGAGTGTTCATAGAGACTGGTCTCTTCATAATCTTACACTCTTATTGGTGAGTACGTATTGGTAACATTTACTTAGACCTATTTGAGATTTCTTTCATCATATACATTAGCCTCACATCATGATTGTTACCACATTCTTCATTGTTAGCACCTTTGTTTTTCATAGTTACTCACCTCTTATTACGTGAATGTTTATTTCTTCATTTCATAGTTCATTTTATCATATGCCAATGCACTTGGCCATTTAGTGTATCTTACAATCGTACTTAACCCTCCTAAGATTCATCATTTCATTACGTACATCTTAGGTTCACTTATTTTTGAACGTATGTTAGACTTATGTGTCTATACATACAAGTCATGGGGCTTCATTCATAGTTCGCTAAGTGATTCTTACTTTCCTAAGATTATGTATTACAAGACTTATGTATCTTGTATATATGTCAAGATCTTGATTTTTGATCTAAGTAGATGACATTATTTTTGAATATTTTACTCACGTATGACTTATGTATCAATATGGAGTTTTGGGCACGGGAACTCAAATCTTGAATCACTTGGATATCATTATATTTTTCATTGATTTTATTTCTAATATTCATAACATTAGAACTCTAAATTAAAGCTCATCATTTTCATGAAATAATTAATTTTCTATTTTAATTAGAATTCTAAATTAAATCTCAACATTTACATGAAGGAATTAATTTTCTATTTTAATTAGAATTCTAAATTAAATCCCAACATTTACATGAAAGAATTAATTTTCTATTTTAATTGGAATTCTAAATTAAATCTCAATATTTACATGAAAGAATGAATTTTCAATTTTAATTAGAATTCTAATTTAAATCTAAATATCTACATGAAGGGATACATTTCTGTTTTAATTTTACTATTAGCTAACCAAAAGGTTGGGGGTCGAGCCCCAACAACCCCTTTTGAGTTTTTAGAATTAAATTTGCTACAATAGGGAGGTTGTGGGTTCGAACCTCGTAGCCCCCCTTATTTTCTTTAAATTTTCGCTGAAGAGGATGAGGCTGTGAGGTGGTGGTTTCGAACCCCCACAACCTCACTTTATTTCCTTAATATTTTTGCCCCCCCCCCCTTCAGTGCTGAGGTCGTGGGTTCGATCCCCACGCCTCGCATCTTTTTTCTTTTCTTTTTGCGAACTGTGGGGTCGTGGGTTCTATCCCTGCCCCCAGCCCCCCCTTTTTTTCTTTTTTCCTTTTTTGCGAACTAGGGTGTCGTGGGTTCGATCCCCGCCCCCAGCCCCTTCCTTTTTTCTTTTTCGTGAACTGGGGGTCGTGGGTTCAATCCCCGCCTCCAACCCCTTTTTTTTTTCCTTTTTCGCGAACTGGGGGGTTGTGGGTTTGATCCCCGCCCCCAGCCCCTTCCTTTTTGTCTTTTTCGCGATCTGGGGGTCGCGGGTTCGATCCCCTCCCCCCCCCCCCCCCCCTTTTTTTTTTCCTTTTTCCCGAACTGGGGGGTCGTGGGTTCGATCCCCGCCCCCCAGCCCATTTTTTCAGTTTTTTTCACAGGTGAGGTCTTGGGTTCGATTCCCATTGACCTTAATTTATTTTGTTTTAAAAACTCAGAATTTGACACTTTTGAAGGGTACGAAAATCTGGAATTTTTTGTCCTTATCCAACCATCTTTAGGTGCTTTTTTTTCATAAGTTTAAGTAGCTATAAGATAGTTATTCAATTCACTATACTTAATCATAATGAACATCACATTGTACACCCATTACACATAAAATACACAACTTATACACCCCAAAACAGTGACTAAAACACTGCTTTTCCGGTCATATTTTGATGATCATTATCGTGATTTCCCGCACATAAACACATTCGTATTTAATTTAAATACATCATTCATGCAAAAATCTAGCAGCACAACATACCCATCCTACAAATCTGTTAGGGAGCTAAGGACAAGGACATACGATTAGGAACAACCTTAGTTTCAAGAGTATAAGAAACGTTCGAAAGAAAGTACTCTTGGAGAAAGAATTCCATGAGAGAAACCCATACCTTTATTGATGTTCAAACAAAGAATTTGCTGCCCAAAACTCTCTCCAAAAATCAGTTCAAGTTACCTCAACGTCCACACCACTCAATGAACAACTTCTCTTCGCCTTAATGTTTTTGGTTGCTTTGTTTTTCTTAAAATTTCATGTGAGTTCTTCAAGTGTGAAGAACTCTTGATGTTTTCTCTGGTTTTTGTTGTGCTTGGCAGAATAACGTGAGAGACATGGAGAACGTGAGAGAGAGAGTTAAGAAGCGTGAGAGAGAGAGAGCGCTATTAGGATTAGGAGACTAAATTCAAGATTTAGTCAAAATAGGATTTAACTAACTTAATAAAAATCTGATTTATTTTAAATTAATACGTGAAAGGACCATTATGCCCTTAAAATTTCAGATTTTCAATTAATAACTAAATCACCTTAAGTACCTATTTATTCGACTTTTTTTGAATCGTTACAGTTGCAAATGTCGTCATGCATTTTTATTTATCCCCTGTTAGAAGGGAGAGAGATGGGATGTTTTTATCTAAAGAGTAGTCAAACTCACTCCCTTTTGATTGTTTATTGAACAGTGAAAATCGGATTATAATTCATGTATAGAGTTGATTCTAAAATTAGACAGCACTTAATGGTCTTACTACAATTCCTTATGGTCTCACTGATGAATCAAGAGGGAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTGTCTCTATGCATTATTTCTGATACTCAATGCAGCTTTGGGTTGTATAATTGGATCTTTGGGTCTTTCGATTTTGTGCAGGACAATCCCAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGG</genome_strand>
        <mrna_strand>AAGCCTCCTTTCTGAAGCTGAGAGGAGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT.................................................................................AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCCCAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACANAATGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566748" ref_strand="-" ref_description="SGN-U566748 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157336139|emb|CAO61969.1| (e_value=1e-21) unnamed; (*ATH) AT4G35800.1 (e_value=6e-43)  Symbol: None | DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1), nearly identical to P:P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} | chr4:16960661-16967896 REVERSE | Aliases: F4B14.7... ; (*SWP) sp|P18616|RPB1_ARATH (e_value=5e-42) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205; ">
      <seq>gataccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcatggtgagactacggagttgagcgatcctcgacttgggacgattgatcggaagatgaagtgtaagacgtgtatggcgaacatggctgatgtccggggcattttggtcaccttgagcttgcgaaacctatgtttcatataggttttatggaacctgttcttagtatccttcggtgtgtctgcttcaattgctccaaaattctggcggatgaggtgcaagcacaggtggacgctagagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttcatgaattatttctttcagttgcttagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="88802" stop="83208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88503" g_stop="88323" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88322" i_stop="88242" i_length="81">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88241" g_stop="88003" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="420" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88002" i_stop="83762" i_length="4241">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83761" g_stop="83502" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="680" r_length="260" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U566748" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88503" e_stop="88323"/>
          <exon e_start="88241" e_stop="88003"/>
          <exon e_start="83761" e_stop="83502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTGTTGAATTCTCTAGGGTTTAAATTTGATTTAGTTTTTGTTTCTTCGTTTCCAGAGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAGGTACTTTGATTGACTTGAATTGAATTGTTAGGTTAAAAGTTTGTGTATAGTGAAATTGTCTTCTTCTTTTTTTTTTTTTGTTTAAGAAGGATTGAATTACTGATCATATATTTTTCACTACCTGGTTTGATGTTTGTGATATCAATTAAATTATAAGTGGGTAAACCATTAACATTTGGAGGTTTCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTACATTTCCTTACGGTTTCACGGTTTCACTGATGAATGAAGGGGAAAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTTTCTCTATGCATTATTTCTGATCCTGGAATTCAGACCCCATATGAGACCGGCGTCGTTGACCTCTCAGAAGTCGCAAACAAGCCTACTTACGTCATTCTTACTTTACATAGGTTAATTTGTAACGATTCAAAAAAAAAGAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCCAATTAGCCCTCTCTCTCTCACGCTTCTAAACTCCCCCTCTCACGTTCTCTATCTTCCTCACATTATTTCTGCCAAAATATCAATAATTTTCATGCTTGAAGAACTCACAAAAAAATTTTTAAGCAAAAGAAAAAGTAATCAAAACGTCAAGGCTAAGAGAGGTTTGGTGAGTGAGGTGTACGTTGAAGTGAATTGGGAGTGGTTTGGAGGAGTTTTCCGGGCAGCAACATTTAAAGTTTGAACATCGATTAAGGTATGAGTTTTCTTCTCTCTTGGATCCTTTCCCAAGAGGTTCCTTACGATTCAAACTATTCATCTCAAAACTAAGGTTGTTCCCCCGTTGCATGTCCCTGTCACTAGCTCCCTATGATCTTAGGTTGGGTATTCTTGTTGATAGAATTTAGGGATACTTGTTTGTGGTGATAATCTCGTTTCGAATATGTGTTCATGATGATGTGATTATATTTTATGTTTTTCGGAAAATATGAATGTATTTGTGCAAGATTTTGATCATGACTTTGAGTTTTTCTTTAGCATGTTAATAGATTTGAGATTACTCGTGTTTTATGTGCAATTAGAGGCTCTTAAAATCGTAATATTCGTAATATTCACATGGTTGAAAGGCTGTAAATTCTAGTCACAATAAATGATCAAATCATCCCCCTAAATTTGTCTTAAGAACATTAATGAATGTATAAGAAAAATGCTAAATTAACCCGTAAAAAAGATGTGAAAAATTATGGAGTAGTGTCCCAGAATCTGGAAATAAGTTTTAGACACATTCTGGAAAATTTGAGCAAAAAATGAATTAAAAAAAAATAGGTGAGGTCTTCAGGGATCGAACCCGAGACCTCACCAACACATGCCTTGATAAAATAATTAAAAAGGAGTGTTGAAGACGGGGCTCGAAATGGGGGCTGGGACCAGCGAAATTCGCCAAGAAAAGAAATAAAAAGGGGGCTGGGGGGAATCGAACTCGCGACCCCCAGCCACGCGCGAAAAAAAAAAGGGGGGATTAAAGAGGGAATGCTGGGGGCGGGGATCGAACCCGCGACCCCCAGCTATGCGCGGAACGAATTAAAAGGGAGAAAAGGAACGCGAGGCGTGGGAATCGATCCCACGACCTCAGCGCTGAAGGGAGGGCGCAAATAATAGCGTGAGGCTGTGGGGATTCGATCCCATGACCTCACTGCCACTCCCCTATTAAATAAAAAAAAATAGAGGGGCTGTGGGGGTTCGAACCCACCACCTCACAGCCTTCTCTTCAGCGAAAATGAGAGGAAAAATAAGGGGGCTGTGGGGGTTCGAACCCACAACCTCCCTATTCAAGCGAATTTAATTAAAAATAATAATAATAGTAAATTAAAATTCTAATTAAAGTTGGAAAATTAATTCTCTTATGTAAACATTGAGATTTAATTTAGAATTTTAATTAAAAATAGAACATTAATTCTTTTATGTAAATATTGAGATTTAAATTGGAATTCTAATTAAATTAGAAAATTATTCTTTCATGTAAATGATTGAAATTTAATTTAGAATTCTAATTAAAATAGAAAATTTATTATTTCACGAAAATGTTGAGACTTAACTTAGAGTTCTAAATTTATGAATATTAGAACTAAAATCAATGAAAAATATAAATGATATCCAAATAATTCAAAATTTGGGTTCTCGTGTCCAAACCTCCGTATTGATACATAAGTCATACGTGAGTGAAATATTCAAGAATAATGTCATCTACTTAGATCAAAAATCAAAGATCTTGGCATATATACAAGATACATAAGTCTTGTAATACATAATCTTAGAAAAACAAGAATTCACTTAACGAACTATAAATGAAGTCTCATGGCTTGTATGTATAGATATATAAGTTTAACATACGTTCAAGAATAAGTGAACCTAAGATATACGTAATGAAATGAAGAATGTGGTGACAATCATGATGTGAGGTTAATGCATATGATGAGAGCAATCTTAAATGAGCTTAAGTAAATGTTACCGATACATACTCACCAATGAGAGTGTAAGATAATGAAGAGACCAGTCTCTATGAATACTCTAATAAAAATATTGAGTTTAAAACACTTAATACTAATGATGAGATGAGAAATCATTTATTGAGCTATGATGTCTTCATACTAGAAGCAAACTTCTATGATGTATGAGTTGCATGTAATGGAACTTTATACCGAGCACCGATAGGCTAGCTATGAGTGGTGATGCCTTCTTTCGGGAAGGGCGGAGGTTCACGTAATTCTCATGAGATGAGACTGTCCGGCTTGCCGGGTATGGGTCTCCATACATCTCCTAGTCTTTGAACCTATATTGCCACTATAGGGATCTGGCGGGGTTAAATTCCCATATACGCTAGCATGTTATTGAATCGCTTTGGCCGGTGATTCCACCTCTTTTCGGTGTGGGGAAGACACTGGATTTCATGATGCTCACATGATCTATGTCGGTTAAAGTTAAAGTTCCCAATGAATGAATGAGGCCAGCCTCAAATGAATCATATAAAGAAATGAATGATACCGAAGGTGTTAGGATAGGATAATCAAGAGGTGAGCTAGATTCAGGTAATGACATTAGGTCATTCCTGATCATTGCACAGCAAACCCGATGAGAGTCTTAAACTACATCCTAGGTATAGCTGGTGTTCGCACTGGCCTATGAATGAATTGAAATGAAATACGAATGAATGAGTGAAGCAGACTCTGTGTTTGCTAAAGAAGGCTCCCTAGTTGAGGTCCCATATGTTGAGCCCTCATTTTGGAAAGTCTTAAAGTTAAGTCTATGATAATAAGGTCTCATGATATACGAATGAATAATATGAACGAAAGTATGTGTTATATGTTATGTGTTATATGAATATGTTATGTTTTGTGTGCTATACGATAATTATAATGATGCATGTCACTCTCATGGCATAACTTTCCCAATCTTAATTTGGCAAGTCCACTGACTTGACTTCCAAAAATCATGTTGTTAGGAAAGAGCTATTCTTCCTCATGCATGTCCCTGGTGTGTACTTGCATATACTCATACTTAGTACAAGTGTGTACTAATTCCATACGAACATCTACTTTTAGGTGCAGGCACAGGTGGACGCTAGAGCTACATGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTT</genome_strand>
        <mrna_strand>GATACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT.................................................................................AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCACAGGTGGACGCTAGAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTCATGAATTATTTCTTTCAGTTGCTTAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U564578" ref_strand="+" ref_description="SGN-U564578 Tomato 200607#2 [7 ESTs aligned] ">
      <seq>ttcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagctcaggattagaagataaatgttctgaagctcccgagtctaatatccattcactagacttgattgaaataaagagtagtcaaactcactccattttgattgtttattcaacggtgagaatcggattataatttatgtatagaggtgattctaaaattagacaacacttaatggtcttgctacatttccttacggtttcacggtttcactgatgaatgaaggggaaaaaaaacttggtctaatcttgacgtctcataaggaaggaagtggtcgtttctctatgcattatttctgatcctggaattcagaccccatatgagaccggcgtcgttgacctctcagaagtcgcaaacaagcctacttacgtcattcttactttacataggttaatttgtaacgattcaaaaaaaaagaagagaattatgtaaataagaataaataggtatttaagggcataattgtcctttcacgttttaaatgaataaataaataaataaataaaacagatttgtatttatttattttaatgttatttgactaattcttgaattagtctcctaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="88119" stop="86557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87819" g_stop="86857" g_length="963"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="963" r_length="963" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U564578" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87819" e_stop="86857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTACATTTCCTTACGGTTTCACGGTTTCACTGATGAATGAAGGGGAAAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTTTCTCTATGCATTATTTCTGATCCTGGAATTCAGACCCCATATGAGACCGGCGTCGTTGACCTCTCAGAAGTCGCAAACAAGCCTACTTACGTCATTCTTACTTTACATAGGTTAATTTGTAACGATTCAAAAAAAAAGAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCC</genome_strand>
        <mrna_strand>TTCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTACATTTCCTTACGGTTTCACGGTTTCACTGATGAATGAAGGGGAAAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTTTCTCTATGCATTATTTCTGATCCTGGAATTCAGACCCCATATGAGACCGGCGTCGTTGACCTCTCAGAAGTCGCAAACAAGCCTACTTACGTCATTCTTACTTTACATAGGTTAATTTGTAACGATTCAAAAAAAAAGAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U566746" ref_strand="+" ref_description="SGN-U566746 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157336139|emb|CAO61969.1| (e_value=1e-17) unnamed; (*ATH) AT4G35800.1 (e_value=7e-36)  Symbol: None | DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1), nearly identical to P:P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} | chr4:16960661-16967896 REVERSE | Aliases: F4B14.7... ; (*SWP) sp|P18616|RPB1_ARATH (e_value=6e-35) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205; ">
      <seq>gaattttggagcaattgaagcagacacaccgaaggatactaagaacaggttccataaaacctatatgaaacataggtttcgcaagctcaaggtgaccaaaatgccccggacatcagccatgttcgccatacacgtcttacacttcatcttccgatcaatcgtcccaagtcgaggatcgctcaactccgtagtctcaccatgctcaatgtgcaccacagacatttatctctggaaacgaagaaacaaaaactaaatcaaatttaaaccctagagaattcaacaaaatgaatcaagattagtgaaaattacaatttcgtcggcgctgacaatgccgaactggaccgtccggaccttggcaacctccgccggctagaaggggaagcgcaaatccatggtggcgcaacctaggttacacctctacagaagaaatttatacagtagaataattattttgtttttttttcgaacaagatagataacagagggttttgattaatctatatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="87714" stop="88821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88014" g_stop="88521" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U566746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88014" e_stop="88521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTCAACTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAAACGAAGAAACAAAAACTAAATCAAATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAG</genome_strand>
        <mrna_strand>GAATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTCAACTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAAACGAAGAAACAAAAACTAAATCAAATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U571139" ref_strand="+" ref_description="SGN-U571139 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157329545|emb|CAO40656.1| (e_value=2e-15) unnamed; (*ATH) AT2G17030.1 (e_value=2e-11) | Symbol: None | F-box family protein, similar to hypothetical protein GB:AAB81667 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr2:7406185-7408003 FORWARD | Aliases: F6P23.19, F6P23_19; ">
      <seq>tgagacgaaaatgacttttgtctagaatttactgaaaaagcagtgacatacaatacttttcacataatattttgactaacacataaaatggatcataggagtaaatgtcattggagagaaaatctcagttgagccagctaggaggtggccagaaaaaatcagtgtaaccggggaaacatgccattggcccaataaacgcgttctccatgtcaaatcccccaagtgaatagtcattttcatgttttagcgcatcccaaaaatcatggagatctccatccccagctttcctgaattgatctatgaagtaaactaaatttcctctgcaccctggaaaatctttagcagacacacagtaggaccaatacgatgcatcatctccaacaaatatgacttggtcattcaagtttgtgacttgcttccaataatgctcctcttcctcatatttatacactctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="97421" stop="98479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97719" g_stop="98179" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U571139" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97719" e_stop="98179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACGAAAATGACTTTTGTCTAGAATTTACTGAAAAAGCAGTGACATACAATACTTTTCACATAATATTTTTGACTAACACATAAAATGGATCATAGGAGTAAATGTCATTGGAGAGAAAATCTCAGTTGAGCCAGCTAGGAGGTGGCCAGAAAAAATCAGTGTAACCGGGGAAACATGCCATTGGCCCAATAAACGCGTTCTCCATGTCAAATCCCCCAAGTGAATAGTCATTTTCATGTTTTAGCGCATCCCAAAAATCATGGAGATCTCCATCCCCAGCTTTCCTGAATTGATCTATGAAGTAAACTAAATTTCCTCTGCACCCTGGAAAATCTTTAGCAGACACACAGTAGGACCAATACGATGCATCATCTCCAACAAATATGACTTGGTCATTCAAGTTTGTAACTTCCTTCCAATAATGCTCCTCTTCCTCAAATTTATACACTCTGAATCT</genome_strand>
        <mrna_strand>TGAGACGAAAATGACTTTTGTCTAGAATTTACTGAAAAAGCAGTGACATACAATACTTTTCACATAATATTTT-GACTAACACATAAAATGGATCATAGGAGTAAATGTCATTGGAGAGAAAATCTCAGTTGAGCCAGCTAGGAGGTGGCCAGAAAAAATCAGTGTAACCGGGGAAACATGCCATTGGCCCAATAAACGCGTTCTCCATGTCAAATCCCCCAAGTGAATAGTCATTTTCATGTTTTAGCGCATCCCAAAAATCATGGAGATCTCCATCCCCAGCTTTCCTGAATTGATCTATGAAGTAAACTAAATTTCCTCTGCACCCTGGAAAATCTTTAGCAGACACACAGTAGGACCAATACGATGCATCATCTCCAACAAATATGACTTGGTCATTCAAGTTTGTGACTTGCTTCCAATAATGCTCCTCTTCCTCATATTTATACACTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U568277" ref_strand="+" ref_description="SGN-U568277 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ttccggcacgaggattacgactaaactgcagttttggtgaagatgaaagagaagaagatgaacaagctgtattcttggcccatatgggctgatcttcctgaagaactacttgttaagatcagtaagtgcctcaaatattcatttcaagttggtcattttcgtgctgtttgtacctcttggagatccgcagttccattatttccccttcataaaagactctccattgtccctaaatacattggcagtaaaaagcctcaaagtaaatgcatgaataggttcgttttccggcttgatcttcaacaacttccatcaccatcaccgtcacccaccagttatttgatagctgtggcggaacaattcaacggagacggccaaagccaactccacctattgaaccctgtcactggaagtcctattcctatctcctcatcaccatcaaacttgttgtttccaagagagattaatttgaacaaatttcgcgtctctatactgcataaatcttccttgatgtttcatccacacacaaatcgctatcttattggtaaaagtgtttatctttccactctccgacaatcctctgacggacgtattccgaaagcagctgctgttcttggaagtggaaangtgtctttgtttacaattaatacgagagagagagttatcttaaattatgtgatggatgggtctgttacagaccataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="99477" stop="98188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99177" g_stop="98488" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="703" r_length="690" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U568277" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99177" e_stop="98488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGACTAAACTGCAGTTTTGGTGAAGATGAAAGAGAAGAAGATGAAGAAGCTGTATTCTTGGCCCATATGGGCTGATCTTCCTGAAGAACTACTTGTTAAGATCAGTAAGTGCCTCAAATATTCATTTCAAGTTGGTCATTTTCGTGCTGTTTGTACCTCTTGGAGATCCGCAGTTCCATTATTTCCCCTTCATAAAAGACTCTCCATTGTCCCTAAATACATTGGCAGTAAAAAGCCTCAAAGTAAATGCATGAATAGGTTCGTTTTCCGGCTTGATCTTCAACAACTTCCATCACCATCACCGTCACCCACCAGTTATTTGATAGCTGTGGCGGAACAATTCAACGGAGACGGCCAAAGCCAACTCCACCTATTGAACCCTGTCACTGGAAGTCCTATTCCTATCTCCTCATCACCATCAAACTTGTTGTTTCCAAGAGAGATTAATTTGAACAAATTTCGCGTCTCTATACTGCATAAATCTTCCTTGATGTTTCATCCACACACAAATCGCTATCTTATTGGTAAAGTTGTTTATCTTTCCACTCTCCGACAATCCTCTGACGGACGTATTCCGAAAGCAGCTGCTGTTCTTGGAAGTGGAAAGGTGTCTTTGTTTACAATTAATACAAGAGAGAGAGTTATCTTAAATTATTTGATGGATGGTCTTGTTAGAGACCATAACC</genome_strand>
        <mrna_strand>ATTACGACTAAACTGCAGTTTTGGTGAAGATGAAAGAGAAGAAGATGAACAAGCTGTATTCTTGGCCCATATGGGCTGATCTTCCTGAAGAACTACTTGTTAAGATCAGTAAGTGCCTCAAATATTCATTTCAAGTTGGTCATTTTCGTGCTGTTTGTACCTCTTGGAGATCCGCAGTTCCATTATTTCCCCTTCATAAAAGACTCTCCATTGTCCCTAAATACATTGGCAGTAAAAAGCCTCAAAGTAAATGCATGAATAGGTTCGTTTTCCGGCTTGATCTTCAACAACTTCCATCACCATCACCGTCACCCACCAGTTATTTGATAGCTGTGGCGGAACAATTCAACGGAGACGGCCAAAGCCAACTCCACCTATTGAACCCTGTCACTGGAAGTCCTATTCCTATCTCCTCATCACCATCAAACTTGTTGTTTCCAAGAGAGATTAATTTGAACAAATTTCGCGTCTCTATACTGCATAAATCTTCCTTGATGTTTCATCCACACACAAATCGCTATCTTATTGGTAAAAGTGTTTATCTTTCCACTCTCCGACAATCCTCTGACGGACGTATTCCGAAAGCAGCTGCTGTTCTTGGAAGTGGAAANGTGTCTTTGTTTACAATTAATACGAGAGAGAGAGTTATCTTAAATTATGTGATGGATGGGTCTGTTACAGACCATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U578888" ref_strand="+" ref_description="SGN-U578888 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|30680073|ref|NP_849965.1| (e_value=6e-27) expressed protein [Arabidopsis thaliana]; (*ATH) AT2G17695.1 (e_value=5e-29) | Symbol: None | expressed protein | chr2:7691194-7692255 REVERSE | Aliases: None; (*SWP) sp|Q8GXB1|U548_ARATH (e_value=4e-28) UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695; ">
      <seq>ttaatcagtacagaaccccaattccaaatctctcatcttcatcggctcactgccactgttacctcagtgccggcggtggactctccggtaaagatttttccgatctcatactcctcttctctgctcctatttattccaatcatgaataatttctacgttcgtttttgatgctcgtatttttctttagcagaaaaatttagtgaattctttacaggttaagtacttgatggtatttcttagctggacgcgtccatctcctgaagagcagaaagcatgtatcaacaagtaaagaatgcccagaacttgttactggcttcgttccaatttatttgtcttatcttgctttttaatccgtttaccagagattctagaccgctacatcgttttgggacactctacgtatgtttattttaagattaaactctgtgtcaactcaacaaattgaaatagaatgagtaatttatttatttccctttctattggtttaattgtgggaatcattattgagggtttcgtctgtaacaggtctggttcctttaactatgataaaagatttagaggaactactgagaaacctgctcctctacttaagcaagacagtgagcttgcaaaggatggtttctctgttaattgtgctcgagtattagtcggttcaggccgtgagacttttgaaaagggaaaagctgcccttcaaaattggaggcattttggattgaattgggcgtttgttgatccaaaagctcaaattcaaaatgggacaaagttctgtgtttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="101924" stop="103375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102224" g_stop="102925" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102926" i_stop="103000" i_length="75">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103001" g_stop="103075" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="777" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U578888" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U578888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102224" e_stop="102925"/>
          <exon e_start="103001" e_stop="103075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCAGTACAGAACCCCAATTCCAAATCTCTCATCTTCATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCGGTAAAGATTTTTCCGATCTCATACTCCTCTTCTCTGCTCCTATTTATTCCAATCATGAATAATTTCTACGTTCGTTTTTGATGCTCGTATTTTTCTTTAGCAGAAAAATTTAGTGAATTCTTTACAGGTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTACGTATGTTTATTTTAAGATTAAACTCTGTGTCAACTCAACAAATTGAAATAGAATGAGTAATTTATTTATTTCCCTTTCTATTGGTTTAATTGTGGGAATCATTATTGAGGGTTTCGTCTGTAACAGGTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAGGTTTGGTATATCAGTTATTCTTGTAGAAATATCATGCGATCAATGGTCTGATTATGTACCAAACTAACTTTGCAGGCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAGTGGGACAAAGTTCTGTGTTTGTGT</genome_strand>
        <mrna_strand>TTAATCAGTACAGAACCCCAATTCCAAATCTCTCATCTTCATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCGGTAAAGATTTTTCCGATCTCATACTCCTCTTCTCTGCTCCTATTTATTCCAATCATGAATAATTTCTACGTTCGTTTTTGATGCTCGTATTTTTCTTTAGCAGAAAAATTTAGTGAATTCTTTACAGGTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTACGTATGTTTATTTTAAGATTAAACTCTGTGTCAACTCAACAAATTGAAATAGAATGAGTAATTTATTTATTTCCCTTTCTATTGGTTTAATTGTGGGAATCATTATTGAGGGTTTCGTCTGTAACAGGTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAG...........................................................................GCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAATGGGACAAAGTTCTGTGTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U580388" ref_strand="+" ref_description="SGN-U580388 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|217073422|gb|ACJ85070.1| (e_value=1e-58) unknown; (*ATH) AT2G17695.1 (e_value=2e-58) | Symbol: None | expressed protein | chr2:7691194-7692255 REVERSE | Aliases: None; (*SWP) sp|Q8GXB1|U548_ARATH (e_value=2e-57) UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695; ">
      <seq>catcggctcactgccactgttacctcagtgccggcggtggactctccggttaagtacttgatggtatttcttagctggacgcgtccatctcctgaagagcagaaagcatgtatcaacaagtaaagaatgcccagaacttgttactggcttcgttccaatttatttgtcttatcttgctttttaatccgtttaccagagattctagaccgctacatcgttttgggacactctacgtctggttcctttaactatgataaaagatttagaggaactactgagaaacctgctcctctacttaagcaagacagtgagcttgcaaaggatggtttctctgttaattgtgctcgagtattagtcggttcaggccgtgagacttttgaaaagggaaaagctgcccttcaaaattggaggcattttggattgaattgggcgtttgttgatccaaaagctcaaattcaaagtgggacaaagttctgtgtttgtgtgaaggagttcttcccgtggcttatgatgcctctacaggttgtttatgttagcgagaacaagaactcgaaaaagggggcttcgtttagttttggcagtggaactctgcaaggacatttgctggctggtgaagaacgtttttcaatagcattggacgaaaatgatctagtttggtacgagatactttccttctcgaagcctgcacatttgctgtcactctttggatacccttatngtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="101963" stop="103967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102263" g_stop="102310" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102311" i_stop="102437" i_length="127">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102438" g_stop="102622" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="233" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102623" i_stop="102748" i_length="126">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102749" g_stop="102925" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="410" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102926" i_stop="103000" i_length="75">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103001" g_stop="103196" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="606" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103197" i_stop="103551" i_length="355">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="103552" g_stop="103667" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="722" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U580388" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102263" e_stop="102310"/>
          <exon e_start="102438" e_stop="102622"/>
          <exon e_start="102749" e_stop="102925"/>
          <exon e_start="103001" e_stop="103196"/>
          <exon e_start="103552" e_stop="103667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCGGTAAAGATTTTTCCGATCTCATACTCCTCTTCTCTGCTCCTATTTATTCCAATCATGAATAATTTCTACGTTCGTTTTTGATGCTCGTATTTTTCTTTAGCAGAAAAATTTAGTGAATTCTTTACAGGTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTACGTATGTTTATTTTAAGATTAAACTCTGTGTCAACTCAACAAATTGAAATAGAATGAGTAATTTATTTATTTCCCTTTCTATTGGTTTAATTGTGGGAATCATTATTGAGGGTTTCGTCTGTAACAGGTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAGGTTTGGTATATCAGTTATTCTTGTAGAAATATCATGCGATCAATGGTCTGATTATGTACCAAACTAACTTTGCAGGCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAGTGGGACAAAGTTCTGTGTTTGTGTGAAGGAGTTCTTCCCGTGGCTTATGATGCCTCTACAGGTTGTTTATGTTAGCGAGAACAAGAACTCGAAAAAGGGGGCTTCGTTTAGTTTTGGCAGTGGAACTCTGCAAGGACATTTGCTGGTCAGTTTGCTCTCCTTGTTGCAATTGTTTGTCTTACACTATACCTTTCAACTGTTCAGGTTTTCTGGTTATGATATCATTAGGTTCATTTCAATCTAGCTATATAAAATAAACATTAAGGATTTAAGATTATGTTTCCTTTACAAGCTGCTAACCCAGCCATTGCAAAAGGTTAATATTAGTAGTGGTAGTGTCTAAGTCCAACACAATGCTTACTAGAATGGTAATGTTTTGTCCTATTTTCCATGTTTGAAGTTTTAAGCTTACCATACATCTTAGACCTATCATTCTCCTTTATATTGCTGCATGTAAAACTTGACAATATATGAGTTTGTGATACCAAGTGTTTGAGCAGGCTGGTGAAGAACGTTTTTCAATAGCATTGGACGAAAATGATCTAGTTTGGTACGAGATACTTTCCTTCTCGAAGCCTGCACATTTGCTGTCACTCTTTGGATACCCTTATGTTCT</genome_strand>
        <mrna_strand>CATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCG...............................................................................................................................GTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTAC..............................................................................................................................GTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAG...........................................................................GCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAGTGGGACAAAGTTCTGTGTTTGTGTGAAGGAGTTCTTCCCGTGGCTTATGATGCCTCTACAGGTTGTTTATGTTAGCGAGAACAAGAACTCGAAAAAGGGGGCTTCGTTTAGTTTTGGCAGTGGAACTCTGCAAGGACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................GCTGGTGAAGAACGTTTTTCAATAGCATTGGACGAAAATGATCTAGTTTGGTACGAGATACTTTCCTTCTCGAAGCCTGCACATTTGCTGTCACTCTTTGGATACCCTTATNGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U574370" ref_strand="+" ref_description="SGN-U574370 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157328988|emb|CAO23721.1| (e_value=3e-92) unnamed; (*ATH) AT3G51390.1 (e_value=1e-72) | Symbol: None | zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain | chr3:19086555-19089096 FORWARD | Aliases: F26O13.30; (*SWP) sp|Q52T38|TIP1_ARATH (e_value=6e-12) Palmitoyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1; ">
      <seq>cgaggaaattctggaccgaacccaaagtctttctctctctacattatctctctagatttgttgttttcaagtttcaactctgcggttagttcagactaaactgaagaacacttgtatactcggagacggcgaggaatgtgtattgagaaacaagtgttttctagtgaatgaatttttcgaagaaggtgaaatgggagcattatgcgctggccactctcgggacaccttggatcgtttctccgaccgttgtctccacgttttcccatgtctctccgatcccgctcggagatccacttgttgcttgagaatagcgttggtgatgctgcacttgatctatctgggcgttctatttgtctttgacaaagatttgattcataaaactaaagaagagccatggtacacaactgtctatttgatcctgtttgctgctacactggctcaatacttcatcacttcaggttcttctcctggctatgttgttgatgcaatgagggctgtcaatgaggcagatgcatcatgtaatagggcatcaattacctcaaaacagcctgcttcaagcaaaaacggcgatgtagttattgcaatcgaccggaaccagttgggaagctatcttcaaggccgtggtatgatagcatggacaaagctagtgatggatatgtatcccagtggaacatctcttagaggtgtgacttgcagttactgtaatgttgtgcagcctccacgcgctaaacattgtcatgattgtgacaaatgtgttcttcaatttgatcatcattgtgtttggcttggcacatgcatacgacagggtaatcattgcgctttttggtggtacatttgtggagaaacagcccttatccctttggacgggcccgtttatatattcaattttttgagtctgatatatattccaagccttggggggttatatgcaaattatgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="+" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="119781" stop="124718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120081" g_stop="120361" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120362" i_stop="120456" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120457" g_stop="120571" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="396" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120572" i_stop="121170" i_length="599">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121171" g_stop="121245" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="471" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121246" i_stop="121362" i_length="117">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121363" g_stop="121434" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="543" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121435" i_stop="121595" i_length="161">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121596" g_stop="121733" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="681" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121734" i_stop="122906" i_length="1173">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.324" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122907" g_stop="122940" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="715" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122941" i_stop="123460" i_length="520">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123461" g_stop="123570" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="825" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123571" i_stop="124327" i_length="757">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.810" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124328" g_stop="124417" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="917" r_length="92" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="+" ref_id="SGN-U574370" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120081" e_stop="120361"/>
          <exon e_start="120457" e_stop="120571"/>
          <exon e_start="121171" e_stop="121245"/>
          <exon e_start="121363" e_stop="121434"/>
          <exon e_start="121596" e_stop="121733"/>
          <exon e_start="122907" e_stop="122940"/>
          <exon e_start="123461" e_stop="123570"/>
          <exon e_start="124328" e_stop="124417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCAAATTCTGGACCGAACCCAAAGTCTTTCTCTCTCTACATTATCTCTCTAGATTTGTTGTTTTCAAGTTTCAACTCTGCGGTTAGTTCAGACTAAACTGAAGAACACTTGTATACTCGGAGACGGCGAGGAATGTGTATTGAGAAACAAGTGTTTTCTAGTGAATGAATTTTTCGAAGAAGGTGAAATGGGAGCATTATGCGCTGGCCACTCTCGGGACACCTTGGATCGTTTCTCCGACCGTTGTCTCCACGTTTTCCCATGTCTCTCCGATCCCGGTATCAATTTTTTCATCTATTCTAACCTCGTAGTTTAATTTGAATGTTTTAAACCTTACTCTTTTTTTTTGGTTGTTGGTTTGATTGATTTTTAGCTCGGAGATCCACTTGTTGCTTGAGAATAGCGTTGGTGATGCTGCACTTGATCTATCTGGGCGTTCTATTTGTCTTTGACAAAGATTTGATTCATAAAACTAAAGAAGAGCCATGGTATTTACTCTTACTTTACTTATTGGGGAAAAAGTTATCTTTATTTTTCTTCAGAATTAGCAAGAGACCAAGTGTTTCCCTATGAGAGAATCGATGATGTGAGAGCAAAACCAATAATTCAGTGCAAAAAATGAGTCTTTGTTCGCCTAATAACTTGCTCTGGCTTTACTTTATTGTTTGGTTCGCCTAATTTCATTAGTAATTAGTGGTCATGTTATATTTTAGCTAGAAATATAGTGCATTAAATAAAAAAGATAGAATCTTAAGTGTTATGCAGCAGTCTTTCAGCTTGGTTGTTCAGTGCCTGTATTATGGTTCTTGCTAAAATGCACCCTCTTCTGTTTTATGTGATATTATTTACTCATTAGTCTATCTAAAAATAATGAAGGCCTTTTTATATTTGGATAATCTGACCAAAAAGAAAAACAGTACTCCAATTGGATATAATCCTATTCAAAGTAGTCCCCAATTCAAAAGGAAAATGATGGAGTTTGAATAAAGTGGTCCCCTTTCGATCATTTTTAATGCTTTTGTAGAGATTTTACTTTTACTTGGGTCTTTATGGTATAACTGCTGATACTCTCTTCCTTGCCTTCAAGGTACACAACTGTCTATTTGATCCTGTTTGCTGCTACACTGGCTCAATACTTCATCACTTCAGGTTCTTCTCCTGGGTAATTTCATGCACACTCTTTACTTTCTAATTTACAGGCCATTGTTATACTTTATGCGCTTCAGTGCCAGTAAAGTTGCATTGTGTGATCAGTATAATCTTTTATTTGAACATGTAGCTATGTTGTTGATGCAATGAGGGCTGTCAATGAGGCAGATGCATCATGTAATAGGGCATCAATTACCTCAAAGTAAGAGAATTTCCTTTGTGGGTTATTTACATGGAAAGTAAATTACTGGATTCTCCTGCCATATCTGTGAAATATCAAACTATAAATATGTGGAGTGTTCTGCAGAATTATCTAATTGCTACTATTTTCTGCCTATTGTGATGTAAAATGATCAAGCAAAGACAGCCTGCTTCAAGCAAAAACGGCGATGTAGTTATTGCAATCGACCGGAACCAGTTGGGAAGTTATCTTCAAGGCCGTGGTATGATAGCATGGACAAAGCTAGTGATGGATATGTATCCCAGTGGAACATCTCTTAGGTAGGAATGACTTATATAATACCTTGTTTATGCTTTTCCTTTTGTCTATAAAGCAGCTGGCATTGTTTTCAGCCTATTTTGCAGCCTCTACTGTAGTGCTATTTGGTTCATTTAGTTTCATCTTACATATTGACTCAGTTTGACTTAAATTGTTTATGGAACAAGAAAAGATTTCATTCATAATCATTCAAAATCTGCTGTTTTGGATTGTCTTTCTTGTTGGACCGGGAGGATATAGGCATATACCTCCCCCCTCCCCACTTAAAGATTTGGATATTGGGAGCACCTTATGGTGATGGCAAAGTTGTCTCCACTCATTATCGATTTCACAAGTGATGCTTATATAATAACTATGAGATTCAGATGAAAAGTTGTCAATAGTCTTAGATACAGAAAGCATCTCAGCATCAGAAGGTACCCCCAACTGGCTAACTGAGATATTGTGAGGATTTGGCTAACTGCAGCATGCTGTAGATTTTATATGGAGGGGAAAAGCTGTAACAACCCTGTATGATTTCCTGTGAATGTTCAGAAATTTGTAATTTTTCATTCGATAACAAAGGAAGTTGAAATATAATGAAAATTTCTGCGGAGATGTGTTATTATTGAATCATTTCATGGAATAGCTAATAGCCATGTAATACAAGTGCCTCCAGCATGATCTGTGGGTTAGTCCCTCGTTACAAGTTCAATCATGCCTCAGGAAAAATCCTGGTATCTAAATGGAGAACAGGGTGGACCCATTATCCACCGAGGAACCTTGTGCCATTGGTCACTGAAGATTTGGGTTTCTTACGGTTTCTTAGGGCTATGGGTTTAGGCCCTTAGGGATAAGGGAGTTCATGGATGAATAATGTTCTTTCCTAATCCCTTAAGACCTTATTAATGGCGTGAGTTGGTCCCGAGGGGAAAACGTCCACATTTTCAAGTTCAAACAAGGCCCAGAGCGGGCATGACCAAATTTTTACTGTTTTACGTTGGCTATAGTCCATGGATTTTAGAAAAAAAAAATGACCATGTTAATTTAGATTTACTTTTATCTTTCCCATTTCCTTTCCCCTTACACCACTTTTGTATAGAAGTATGACTGTCGATTCTGTAGTTATAAATTGCATGATTCAATTTGCAAAAGCATCAGTTCCCTTGCTAACTCATTTTTGTTCTCTTCTCCAGAGGTGTGACTTGCAGTTACTGTAATGTTGTGCAGGTAAAAATTTCTTCTTTCTGTCTTCCATTTGTTTGCAGAACAAACATTTCGGTACTTCTGATGATACTTAGTGATTATAGGAGCATTTTAATATTAGCCAAACTAGTGACATGATTTCAAAGCCAAATACTGACTACACCTAGATTTGGAAGGAAATGAGGCAAACTTGTGACAGCAATTTGGTGCTAATATTTTCTTGTGTTGTGCCTCACTTAACCCTTCACATTGAAATGAGGTTGAGGACAGATATATATTCAATTGTTTCAAATGGTTTATGACCTTCTGATTTCTGATTTATACTATTGTGCTTATCCTAATATTTGCACACTTATTTATCCAATAAGTTTATGGTTGCCATTTGCCAAAGTTAAAAGTTTACTTGTGTCAGAAGAACCAATTTCTATAATGGACCTTATACAGTGACTTCTGTCTTGTGAAGTGCCTAGAGCTTATACTTCCACTAGACTACATTTGTCAGTTATGTCAACAACGTTTGATTTTTACTCTGCTTGATTTGCAGCCTCCACGCGCTAAACATTGTCATGATTGTGACAAATGTGTTCTTCAATTTGATCATCATTGTGTTTGGCTTGGCACATGCATAGGACAGGGTAATCATTGCGCTTTTTGGTGAGCATCCATGCTACTAAGTTGATGCACCATTAATGTGTTTATCTTGTTCGCAGTTCAGTGAAATTTTTCTTGCGATTTGATTGAAATGTTTATTTGTACCTTCAGAAGAACTAAATGAAAGAAGTCTTGCTGTGTATTATAAAGATTTATTTCTATGATGGTTTCCACATGTTATTTTGGAGCTAAGTGGAAAGTTGGTGTGGATTTAATATGATTAGAACATGTCAATTGGAGATTTAGGTCCTAGATGTAGATGTTATTTCAGATAATGATACTAATATAGTTATCTCGCTAATTAATGAATATAAAGTCTCATTCAAAATTCTTGCTTTCATGAAGAGGCTTCAATTTTAGCTTGAACCTTTTGAAACGTATCCGTGTCAGCATAGTTTATCAGTTCGAGAAACCTATAAGAGGATGTTGGTCATTTTAAAGATCATTGTGAGAACATATTGAACTAGTTATCTGGGCTTGGGATATATGTGTACTTCGATGTGTCTAATTCAATGTTATAAGTCTTGTGTAAGTGACATGATCACTTTTCTACTCTTAAGACCACAATGAAGACACTATTTAGTAGGGGACTTGTCATAATGTACTTTCCTGTAATTTGATGTATTTTTCTTCATCTATAAACATGAATGAAGCATGTCAGGGTGCTTGATTTTCCTGAACTTTTAACTGGTCATAGATTCTTTTTAGGGTTTCAAGTAATTGGTCTTGGTTCGGTTATTTATTTTCCCAAGTATGACAGGTGGTACATTTGTGGAGAAACAG-CCTTATCCCTTTGGACGGGCACG-TTATATATTCAATTTTTGAAGTCTGATATATATTCAAAGCCTTG</genome_strand>
        <mrna_strand>CGAGGAAATTCTGGACCGAACCCAAAGTCTTTCTCTCTCTACATTATCTCTCTAGATTTGTTGTTTTCAAGTTTCAACTCTGCGGTTAGTTCAGACTAAACTGAAGAACACTTGTATACTCGGAGACGGCGAGGAATGTGTATTGAGAAACAAGTGTTTTCTAGTGAATGAATTTTTCGAAGAAGGTGAAATGGGAGCATTATGCGCTGGCCACTCTCGGGACACCTTGGATCGTTTCTCCGACCGTTGTCTCCACGTTTTCCCATGTCTCTCCGATCCCG...............................................................................................CTCGGAGATCCACTTGTTGCTTGAGAATAGCGTTGGTGATGCTGCACTTGATCTATCTGGGCGTTCTATTTGTCTTTGACAAAGATTTGATTCATAAAACTAAAGAAGAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAACTGTCTATTTGATCCTGTTTGCTGCTACACTGGCTCAATACTTCATCACTTCAGGTTCTTCTCCTGG.....................................................................................................................CTATGTTGTTGATGCAATGAGGGCTGTCAATGAGGCAGATGCATCATGTAATAGGGCATCAATTACCTCAAA.................................................................................................................................................................ACAGCCTGCTTCAAGCAAAAACGGCGATGTAGTTATTGCAATCGACCGGAACCAGTTGGGAAGCTATCTTCAAGGCCGTGGTATGATAGCATGGACAAAGCTAGTGATGGATATGTATCCCAGTGGAACATCTCTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTGACTTGCAGTTACTGTAATGTTGTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACGCGCTAAACATTGTCATGATTGTGACAAATGTGTTCTTCAATTTGATCATCATTGTGTTTGGCTTGGCACATGCATACGACAGGGTAATCATTGCGCTTTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACATTTGTGGAGAAACAGCCCTTATCCCTTTGGACGGGCCCGTTTATATATTCAATTTTTTGAGTCTGATATATATTCCAAGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U584800" ref_strand="+" ref_description="SGN-U584800 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|166203325|gb|ABY84671.1| (e_value=0) ribonuclease; (*ATH) AT2G04270.1 (e_value=0) | Symbol: None | glycoside hydrolase starch-binding domain-containing protein, contains Pfam profile: PF00686 starch binding domain | chr2:1474676-1480583 FORWARD | Aliases: T23O15.10, T23O15_10; (*SWP) sp|P45175|RNG_HAEIN (e_value=5e-47) Ribonuclease G OS=Haemophilus influenzae GN=rng; ">
      <seq>gggaaggagtggctccttatctttcaagaaccagagttagccgttctctttgctgtccgaggtagtactagataacactgggaatttacatatgtttctaagaaccagagttagccgttcaatatgctctaccagaaacagttcgcacgcttggtagttaagttttatgatggctgcttgatgcagcacattatgatttctcaagcactttgtttgttgaattggaagtatcatttgaggtgccttgagttggagaagttgattcagtggatggtcaatttctggagatggttattctcttgtcttgtactgaaatctctagcctatgggagacgtcaaagatactgcattcaagacatttgagctgcaactcttctgtgaagggagatatgtggacttcatctgttgctttatgcaaagctaggcatgatgtctccgtgtcagtaccttctaaacaaagaggaaaacttttcccaaggaacttatggattaaatctcatacaaggatgcctttgggcagcatgtttggatcctggcttgtagaaaggtctatacctatccatctattcgtttcagatcgctctagagatgggaatgttactgtgaaatgcttgaacagcaattcttccatcctaaagcaggtctttagtgattttatagatgaggatagttttttctcagatgagattgatacaacttcagactgtggcaaaagtatttcaactgaacctttgaccattgaagagccatggctatgcgattcttccttgcttcttcatcatttggcagagtctgatgcttctggtgatgtcatttgtgacaacaagattgttgagggtcttgactgtgaaaatttagaatcaggattcgtaaatcagtccacacttagtgagactttatggtccaagtatgaggtcaattctaacgatgcttcgtcaggaaccttgtgcgcaacatatgcccatgtagaggagccctggctattgcaagcatgtatgttatctcctagttttgatgctgagatggctcctgatgactttgaagttgaacagtcagataataaggatgaagctcaacctccatttagcgatcaactcgaacagttagctcaaccttcatctagcaatcaacatgaacaaatacctgagaagctgttggatgttgatcaatgtgatgctatatccaaggaagactctttcacaacaattattctgattaactcttcggtttgtactgtgcaaagaattgctgttttagaaaatgagaaactggttgaactactgctggaaccagtgaaaaataacgtgcagtgcgatagtgtttatctaggagtagttacaaaattagctccacacatgggtggtgcatttgtaaatattggcacttcaagaccctcctttatggatataaagcccaacaaagaaccatttgttttccctccattttgtcatgattcaagggaaaaggtaattaatggtgcttctgttgacatgcttgaagagaacctaggtcttcctagaaataaatccactttagaagaagtggatgcggatgagattgatgatgctgatatagaggatgaatccatggaatacatggacagtgagtttggggaccatgaaagtggtgatgcttgtgatattttagaagtccttgcagaaaattgtaatggtagtgtaactgagcatgggcttgaaactcattcagagaaatatccagaagaatccagtggaattgggtaccgagggcagaatccaactattgagcgtgctatgaatggtaagagaatttcacaaagagatgaaagcaagtgggtccaggtccgaaaaggcactaaaataattgtgcaagttgttaaagaaggattgggtacgaagggcccaacactgactgcttatccgaaattaaggagcagattctgggttttagttcctcgcggcaacacgataggtatttcaaagaagattgctggtgttgagcgcacacgtttaagggtcattgcaaaaactttacagcctcaaggatatggtcttacagtaaggacagttgcagctggtcattcactaaatgaattgcagaaggacttggaagggttgctttcaacttggaaaagtataattgagcatgcaaagtctgcagctcttgccgcagatgaaggtgttgatggagcagttcctgtcatgcttcaccaggcaatgggccaaacactttctgttgttcaagattattttagcgataaggtgaatagtttggtggttgattctccaaggacatatcatgaggttacaaactatcttcaagaaatggcacctaatctttgtgaaagagttgagttgcatggtacaagaactcccctgtttgatgaatacaacattgaggaagaaataaacaacattctcagcaaaagggttccccttgataatggaggttatttagtgatcgaacagacagaggctttagtctccatcgatgtaaatggtggacattgtgtgcttggtcaagggacttcacaagagatggctattctcaatgttaaccttgcagctgctagacagattgctagggaaataaggctgagagacattggtggcattattgtggtggatttcatagatatgttggatgattcaaataagagattggtctatgaggaggtcaagaaggctgttgagagagatcgatctacagttaaggtgtctgaattgtccagacatgggcttatggagattaccaggaaaagagttcgacctagtgtgacattcatgatcagtgaaccatgtatgtgctgccatggtacggggagagtggaagctttagcgactgcatactctaagattgaacgtgaaatttgccggttgctatccacaacggatctgaaggcagaccctgaaaaccccaagtcttggcccagatttattctcagggtagatcagtacatgtctaactatttaacttcaggaaagaggacaaggctagcaatcttgagtagttctctcaaagtttggcttcttctaaaggttgctagaggttttaccaaagggacctttgagctaaaacctttaacaggcgacaaggagtacaagggtgatgaacgtgaaacatctatttcagtgttgcgaccaacagagggtggatttcacccccctcggaaaaaagtcaccatcttccccatcaaaaagtggagtagtggaaagtgatgttacctccattaagaatcatctgtacaggtctcaaaaaacaatgcaaatccacatatggttagcataaatttattagccaattctttcttccctcttgagtttttctcgtcggcttgtaagaaatagctagttttatgaggaaatcaattttgcatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="135484" stop="127535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135185" g_stop="135053" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135052" i_stop="134499" i_length="554">
            <donor d_prob="0.925" d_score="0.67"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134498" g_stop="134293" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="341" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134292" i_stop="133863" i_length="430">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.705" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133862" g_stop="133616" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="588" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133615" i_stop="133514" i_length="102">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133513" g_stop="132180" g_length="1334"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="1922" r_length="1334" r_score="0.999"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132179" i_stop="132089" i_length="91">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132088" g_stop="131771" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1923" r_stop="2240" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="131770" i_stop="131639" i_length="132">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131638" g_stop="131597" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="2241" r_stop="2282" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131596" i_stop="130965" i_length="632">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="130964" g_stop="130840" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="2283" r_stop="2407" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="130839" i_stop="130710" i_length="130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="130709" g_stop="130562" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="2408" r_stop="2555" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="130561" i_stop="129573" i_length="989">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="129572" g_stop="129500" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="2556" r_stop="2628" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="129499" i_stop="128981" i_length="519">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="128980" g_stop="128868" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="2629" r_stop="2741" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="128867" i_stop="128777" i_length="91">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="128776" g_stop="128657" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="2742" r_stop="2861" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="128656" i_stop="128418" i_length="239">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="128417" g_stop="128262" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="2862" r_stop="3017" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="128261" i_stop="128176" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="128175" g_stop="127835" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="3018" r_stop="3358" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U584800" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>3356</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135185" e_stop="135053"/>
          <exon e_start="134498" e_stop="134293"/>
          <exon e_start="133862" e_stop="133616"/>
          <exon e_start="133513" e_stop="132180"/>
          <exon e_start="132088" e_stop="131771"/>
          <exon e_start="131638" e_stop="131597"/>
          <exon e_start="130964" e_stop="130840"/>
          <exon e_start="130709" e_stop="130562"/>
          <exon e_start="129572" e_stop="129500"/>
          <exon e_start="128980" e_stop="128868"/>
          <exon e_start="128776" e_stop="128657"/>
          <exon e_start="128417" e_stop="128262"/>
          <exon e_start="128175" e_stop="127835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAGTGGCTCCTTATCTTTCAAGAACCAGAGTTAGCCGTTCTCTTTGCTGTCCGAGGTAGTACTAGATAACACTGGGAATTTACATATGTTTCTCTTCTTCTTCGTTA-TTGTTCAATA-GCTCTATCAGGTTGTTTTCTTTATCTTCTCTCTTTCTATTTGCAACTTCCCGTTCATTCCGTAATCTTAACTTCTCCTCTATCAGTTGTAAGGCTTTAGTTTTCGGGCGAATTAACTTGCTGCTTGGTTTCCTTCGAGTCTTGTGTTTTAATTTTTCTGAGTTTATGCTATTGAATGCTTATATTGTCTTTCCCTTCATTCTTTTTCTCTGGGGTTCTTCAATTTTCTTGAGGGCTGGCCGCCTGTTGTAGGTGGCGGTAGAAATTCAAGAAAAGATTGTTTGGGGATTCTTTCTTGAATGCAATTGTGATTGGATACTTTATTTGAAGCTATTGGCATATTACATTCGTTGGTTTAGAAGAATTCCCTCCACTTCTGTCATTTAAAAATTAAGTTCTTTGACGACAAAATCAAGAAGGATATGAATTAGTGTATTCATGGGTCACGTATGTCTTTTGTTAAGGGCAAGATGAAGTATATTTCTGTTTTTTGGGTAATTTAACTGTGCTGAGTTAGCATCCTCTGTTCTTATTGGAGTTCTTTTCTTTTTCCTTGTGTTTGCAGAAACAGTTCGCACGCTTGGTAGTTAAGTTTTATGATGGCTGCTTGATGCAGCACATTATGATTTCTCAAGCACTTTGTTTGTTGAATTGGAAGTATCATTTGAGGTGCCTTGAGTTGGAGAAGTTGATTCAGTGGATGGTCAATTTCTGGAGATGGTTATTCTCTTGTCTTGTACTGAAATCTCTAGCCTATGGGAGACGTCAAAGGTAACCATCTCAATCTAGTGTATACCATTTAAATAGTCATAGGTAAAGAAAATTTCAAAAATTTCCTTTTAGCTATGTCTATTCTTGTTGAAAAGGAAAAGAATAGAATAATATCTAACTAATCTAATCTATTTAATAGAGTTTGATATCAAATCTACAATTCTTAGTTTAGCTGATATTGGATCCCCATATTATATTGCACACACTCAAGATGCCCAGTCCTGGGCATGCGAGGGGAGGGAGGGGGTGTTAGATTTTCCCCATCGGATTTGGATGAGGTACTTGATCTCCTTATATGGTTTTAGACAAGGATCACCTCAAGAGCTAGCTATGTTAAGCTCAAGGTTTATATCTTCTGTAAATGATTTGAGAAATTACTAGATACTTTGTTCATTATCTAGTGCGCCTGAGCTCATGTTGGTCTTAGCAGATACTGCATTCAAGACATTTGAGCTGCAACTCTTCTGTGAAGGGAGATATGTGGACTTCATCTGTTGCTTTATGCAAAGCTAGGCATGATGTCTCCGTGTCAGTACCTTCTAAACAAAGAGGAAAACTTTTCCCAAGGAACTTATGGATTAAATCTCATACAAGGATGCCTTTGGGCAGCATGTTTGGATCCTGGCTTGTAGAAAGGTCTATACCTATCCATCTATTCGTTTCAGATCGCTCTAGAGGTATTACTTTTATGATAATATTTCTCTGGACAGTTATACTCGGTTGTAGTTTTCTAATTTATGAATTATTTTTGGATATTAAATGCTTCCAGTGAAATGCAGATGGGAATGTTACTGTGAAATGCTTGAACAGCAATTCTTCCATCCTAAAGCAGGTCTTTAGTGATTTTATAGATGAGGATAGTTTTTTCTCAGATGAGATTGATACAACTTCAGACTGTGGCAAAAGTATTTCAACTGAACCTTTGACCATTGAAGAGCCATGGCTATGCGATTCTTCCTTGCTTCTTCATCATTTGGCAGAGTCTGATGCTTCTGGTGATGTCATTTGTGACAACAAGATTGTTGAGGGTCTTGACTGTGAAAATTTAGAATCAGGATTCGTAAATCAGTCCACACTTAGTGAGACTTTATGGTCCAAGTATGAGGTCAATTCTAACGATGCTTCGTCAGGAACCTTGTGCGCAACATATGCCCATGTAGAGGAGCCCTGGCTATTGCAAGCATGTATGTTATCTCCTAGTTTTGATGCTGAGATGGCTCCTGATGACTTTGAAGTTGAACAGTCAGATAATAAGGATGAAGCTCAACCTCCATTTAGCGATCAACTCGAACAGTTAGCTCAACCTTCATCTAGCAATCAACATGAACAAATACCTGAGAAGCTGTTGGATGTTGATCAATGTGATGCTATATCCAAGGAAGACTCTTTCACAACAATTATTCTGATTAACTCTTCGGTTTGTACTGTGCAAAGAATTGCTGTTTTAGAAAATGAGAAACTGGTTGAACTACTGCTGGAACCAGTGAAAAATAACGTGCAGTGCGATAGTGTTTATCTAGGAGTAGTTACAAAATTAGCTCCACACATGGGTGGTGCATTTGTAAATATTGGCACTTCAAGACCCTCCTTTATGGATATAAAGCCCAACAGAGAACCATTTGTTTTCCCTCCATTTTGTCATGATTCAAGGGAAAAGGTAATTAATGGTGCTTCTGTTGACATGCTTGAAGAGAACCTAGGTCTTCCTAGAAATAAATCCACTTTAGAAGAAGTGGATGCGGATGAGATTGATGATGCTGATATAGAGGATGAATCCATGGAATACATGGACAGTGAGTTTGGGGACCATGAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGGGTATTACATGTTTCATGATCATGTATTCTGTGTCTTACAGCTGAAAGTCCATTATTAGAAAACCCAATCTAATTGGTTCTCCTCTTCCCAGGTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAGGTCTGCTCATTCTCGGGTCATTACTTCATAATTTGTTCAGTTCTTTATTTTTTAGGCAACTTCTGTTCATGGGCTTTCTCAAATTAGCATGAAAACACAATTTTACTTTCTTACTCTAGCACTGATTTTCAGGTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAGGTATGGACTTAGCCAGTTATCAGTCAATGGAATGAAAAGATTTTTGACCTACAAGCATGATTGCATGTCTTTCTCTTGCTTTAATGTTCCTCTAGGTTGATTTTTCACATGGAAGCGGTTTTACAATAGTGAGTGGTTTTTGGTATGAAGATTTGCATATACTGGCTATGAATGAGATTATCTTGGATTAAATTAAACCCAAGTTAATGAAACATTTAAGAAGTAAAATTAGCTTGTTTAAGAATAGCGCCCAGTGTGTGCAATGATGAGTAGCACTGCAATTAGTATCTCAGTACATTACGTTCTTATGAATAGAACTGATGACATTGATTTTCGTCTTTAAACTATAAGGGCATTTGTGCTTTAAGTTACAAATATTTTCCTTTTTGACTTTAAGTGTCCTGATTCCTTTCGCTTCACACAGTTCAGCATATAGTCGCGGCATAGTGTTCCACAACTTTTGTCGTCTTGTTGTGTCCTCTTTTATTCCAACTCTGCAAAAGTTATTTTGGAGATCTGTCATACACCAAATAGTCGCGGTTTGTGTTCCACTACCTGTGGGCTAAAATTGGTTGAGGAATTTTTTTAAAATTATGGTGTACCTTAATATAGATATATTGGACTCTGTTCAGGTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAGGTGGAGATCACTTTGTTTCTTTCTTTTAGCTTTATGTCTTTTATGACATGTATTTTAACTTCTCGTGAGTCAAAACGTTTCATGTTTCATTGATATTCCTCCTTAATCCTTTGATTTATAAAATTTGCAGGGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAGGTATGTAGACCTGCATCTATTTTGATTACACATTGTATTCCAAGAGCATAGTCTTTCTACACCTGGGAAAGTTGGTTATCAGAAAACAAACTAGGATATGCTTAGAAGATCCTTTTTAATGAATTAGAAGATGCTTAGCGTTTGATGGAAATACTTCAATCCAACACTAAAATATGTCTCTTGACAAGCTACACTGCTTCTCTTTTTTCCTGTGGTAGACAAGGCCTCATTTGTAGCCTAGTAGTATCTTGTCAGATCCCAGAACAGAAGAATATTCTGTTGATGCACCTTCTATGGAGAATTAATTCTTTAAAAAAAAGAAACTACACAGGGTATCATGTCCATGTTGCCGTTTTAATCTGCTATTGGTTTGGACATAGCATGTCTGAATTACGTGCTAAACCTCTATTTTTTTTTCTTGGAGGGGATAACCAAGACATCCCTGAGCGTATGTGGATAATGTGCCCGCTCTCTACCTTTCTTCAGTTAAATACCACGCTTTTGTCATAGGAAGGTTCGATCTCTTCACGTGTCTAACCCACACATCACACATTGTGCTCTTACCACTAGACAAAACCAACGGGGATAATCTGTGGTTGCTTTTATGCACCTCTATTTAAGTCGCGTTAATTTGATCCAATTTAGCAGTCAGCCTGGGCTGCAGAATTACACACATTTTTAAAGAAGGAAGGAAGCAGAAACCAATCCAAATAAGCAAGTATCCATCATTCGAATTCAAAGAAATACTGCACTTCTAGTTTCATTGGGTGTTTCTGGTTAGATTTGAACCTTTTATCTGAGAAACCGAGCTAGTTACTGAAATGTACGACAACACAGGATTACATTGGATCTTTTTTGTTGATAAAGACAACATAGTATTGCATTGGTTTTCTTTCTATATGTTAAGTTTATTATTTGCGACAGATTCCCATTTTTTATTTTATCTGATAATTGTTGTCATTTATGTATATACTGAAAATTATTCTCAGATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATTGTAAGTAAACAACCCTCTCTCCGCCCTTTCCCCTCCTCTCTATGTGTGTGTATGTGTCACAGGCGGATCCAAGACTAAATTTGATGAGTTCAACCTTTAAATTCTTAGCACAGAACTGAATGTTCTTCTAAAATTATGATGTGTGTGGTCTTTATGTGGTATTGATGCACAATATTTTGTTTAAATGGGATTACTACTGAAAATAAGAAAGAAAAAAGAAGAGACATAAATTTATATTATGGTCTTCTATGTAAATCTAAAATTGAAGTTAACCTTGTCGAATGCTTGGTAACTAAACGACATTATTTGTAGTACATAACACCTACTGTTCATCATCTAAAACCGGCATGTAATCAGACTGAAAGTTTCGTAATCAGTGCCATCCTACTATGCCTCTCTCTAAACTATATTAGACACTAAGCTCATGCCATATGATTTATAAGATGATAACTTGAAATCGTCAATACATTTTGAAGATGTAGTCCTCTTCTAAGTTTTTTCTTTTATTTTGTTTTCCAGCAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCAACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGAGTATGTTATTTGGTGCTGAATTTCTGTCATAACTACACTAGTGGAAATATCTAATTAATCATGGTTGGTCGTTTCATCTTATACCTGACAGGTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTAGTAAGTAAACTAACGGCATCTTGAGATGCCTTTGCAAGGTTATCTTCTTGGATTCCTTACTATCTGTTAAGCTGCAAAAAGGTTGATCCAAAATCTTGTCTTTGGCAAGCTAATCCATTCTTACCACTTGGTCTCCATTTTTCCTCCTCTTCTTTTGGATCTTTCTGAATATAGTTCAACATGATTTGACATAATGACCGCTTTCCCCAAAACTGATTGTTGTTTCTTGTGTTGATCAGTCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAGGTATGCTTAGTCATTTTATCCATTCTCATAACAAAATATCACTTTTATTTCTGTATTTGCTGATTTTGTAAGCTGTGATTAACCAGGTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGC</genome_strand>
        <mrna_strand>GGGAAGGAGTGGCTCCTTATCTTTCAAGAACCAGAGTTAGCCGTTCTCTTTGCTGTCCGAGGTAGTACTAGATAACACTGGGAATTTACATATGTTTCTAAGAACCAGAGTTAGCCGTTCAATATGCTCTACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTTCGCACGCTTGGTAGTTAAGTTTTATGATGGCTGCTTGATGCAGCACATTATGATTTCTCAAGCACTTTGTTTGTTGAATTGGAAGTATCATTTGAGGTGCCTTGAGTTGGAGAAGTTGATTCAGTGGATGGTCAATTTCTGGAGATGGTTATTCTCTTGTCTTGTACTGAAATCTCTAGCCTATGGGAGACGTCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGCATTCAAGACATTTGAGCTGCAACTCTTCTGTGAAGGGAGATATGTGGACTTCATCTGTTGCTTTATGCAAAGCTAGGCATGATGTCTCCGTGTCAGTACCTTCTAAACAAAGAGGAAAACTTTTCCCAAGGAACTTATGGATTAAATCTCATACAAGGATGCCTTTGGGCAGCATGTTTGGATCCTGGCTTGTAGAAAGGTCTATACCTATCCATCTATTCGTTTCAGATCGCTCTAGAG......................................................................................................ATGGGAATGTTACTGTGAAATGCTTGAACAGCAATTCTTCCATCCTAAAGCAGGTCTTTAGTGATTTTATAGATGAGGATAGTTTTTTCTCAGATGAGATTGATACAACTTCAGACTGTGGCAAAAGTATTTCAACTGAACCTTTGACCATTGAAGAGCCATGGCTATGCGATTCTTCCTTGCTTCTTCATCATTTGGCAGAGTCTGATGCTTCTGGTGATGTCATTTGTGACAACAAGATTGTTGAGGGTCTTGACTGTGAAAATTTAGAATCAGGATTCGTAAATCAGTCCACACTTAGTGAGACTTTATGGTCCAAGTATGAGGTCAATTCTAACGATGCTTCGTCAGGAACCTTGTGCGCAACATATGCCCATGTAGAGGAGCCCTGGCTATTGCAAGCATGTATGTTATCTCCTAGTTTTGATGCTGAGATGGCTCCTGATGACTTTGAAGTTGAACAGTCAGATAATAAGGATGAAGCTCAACCTCCATTTAGCGATCAACTCGAACAGTTAGCTCAACCTTCATCTAGCAATCAACATGAACAAATACCTGAGAAGCTGTTGGATGTTGATCAATGTGATGCTATATCCAAGGAAGACTCTTTCACAACAATTATTCTGATTAACTCTTCGGTTTGTACTGTGCAAAGAATTGCTGTTTTAGAAAATGAGAAACTGGTTGAACTACTGCTGGAACCAGTGAAAAATAACGTGCAGTGCGATAGTGTTTATCTAGGAGTAGTTACAAAATTAGCTCCACACATGGGTGGTGCATTTGTAAATATTGGCACTTCAAGACCCTCCTTTATGGATATAAAGCCCAACAAAGAACCATTTGTTTTCCCTCCATTTTGTCATGATTCAAGGGAAAAGGTAATTAATGGTGCTTCTGTTGACATGCTTGAAGAGAACCTAGGTCTTCCTAGAAATAAATCCACTTTAGAAGAAGTGGATGCGGATGAGATTGATGATGCTGATATAGAGGATGAATCCATGGAATACATGGACAGTGAGTTTGGGGACCATGAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGG...........................................................................................GTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAG....................................................................................................................................GTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAG..................................................................................................................................GGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCTACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGA...........................................................................................GTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTA...............................................................................................................................................................................................................................................TCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAG......................................................................................GTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U573884" ref_strand="+" ref_description="SGN-U573884 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157332431|emb|CAO70421.1| (e_value=1e-16) unnamed; ">
      <seq>gctcaaatcgtaatgttcagtatgatgattcagactgtgatgaggaaatcgagatggaagatccgccgagtgggacatataaacccagcccaccaactgatattgatggtgggaagttctacagaaggcacagctacaatgttccatcagtacattcaggtatcaagtttgatgaatcagatggtgaagaagagatgggaactcacgaattcagtagaggaaccaatcgagcccctaaccgtcctgcacctcatgtgcctcgggttcatcccaatttacctgactacgacaaacttactgctcgcttcgagtctctcaagtcccagaaatctcgtcgcacctagattatccaaggttcatgaagtcagatacattttgtgccagtccaatattattgtatacagtacagaaaccaaatgatatgttaaaaatggttcatttatagtaggtcatttcgtggagttcacttattgcctttgtgttgactttacaaatttgggtgtaataaatcttggatattccttttacaaggttggtcagtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="137084" stop="135940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136785" g_stop="136240" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U573884" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136785" e_stop="136240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAATCGTAATGTTCAGTATGATGATTCAGACTGTGATGAGGAAATCGAGATGGAAGATCCGCCGAGTGGGACATATAAACCCAGCCCACCAACTGATATTGATGGTGGGAAGTTCTACAGAAGGCACAGCTACAATGTTCCATCAGTACATTCAGGTATCAAGTTTGATGAATCAGATGGTGAAGAAGAGATGGGAACTCACGAATTCAGTAGAGGAACCAATCGAGCCCCTAACCGTCCTGCACCTCATGTGCCTCGGGTTCATCCCAATTTACCTGACTACGACAAACTTACTGCTCGCTTCGAGTCTCTCAAGTCCCAGAAATCTCGTCGCACCTAGATTATCCAAGGTTCATGAAGTCAGATACATTTTGTGCCAGTCCAATATTATTGTATACAGTACAGAAACCAAATGATATGTTAAAAATGGTTCATTTATAGTAGGTCATTTCGTGGAGTTCACTTATTGCCTTTGTGTTGACTTTACAAATTTGGGTGTAATAAATCTTGGATATTCCTTTTACAAGGTTGTTCAGTGGATC</genome_strand>
        <mrna_strand>GCTCAAATCGTAATGTTCAGTATGATGATTCAGACTGTGATGAGGAAATCGAGATGGAAGATCCGCCGAGTGGGACATATAAACCCAGCCCACCAACTGATATTGATGGTGGGAAGTTCTACAGAAGGCACAGCTACAATGTTCCATCAGTACATTCAGGTATCAAGTTTGATGAATCAGATGGTGAAGAAGAGATGGGAACTCACGAATTCAGTAGAGGAACCAATCGAGCCCCTAACCGTCCTGCACCTCATGTGCCTCGGGTTCATCCCAATTTACCTGACTACGACAAACTTACTGCTCGCTTCGAGTCTCTCAAGTCCCAGAAATCTCGTCGCACCTAGATTATCCAAGGTTCATGAAGTCAGATACATTTTGTGCCAGTCCAATATTATTGTATACAGTACAGAAACCAAATGATATGTTAAAAATGGTTCATTTATAGTAGGTCATTTCGTGGAGTTCACTTATTGCCTTTGTGTTGACTTTACAAATTTGGGTGTAATAAATCTTGGATATTCCTTTTACAAGGTTGGTCAGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U575929" ref_strand="+" ref_description="SGN-U575929 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|79497106|ref|NP_195298.2| (e_value=1e-91) unknown; (*ATH) AT4G35730.1 (e_value=8e-94)  Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g34220.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_480332.1); contains InterPro domain Eukaryotic protein of unknown fu... ; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=5e-27) IST1-like protein OS=Dictyostelium discoideum GN=DDB_0188219; ">
      <seq>gaattggaaacgaccgttacacatacaactctgttctcttcttcactaccattctcacacacactcttctcatcgcttcactctctctctctcttttaacaagaaaatgacagtagcaaacgctgccaccaagcactgcaagaaggccatgaagatgggtctttctctcttctgcagaaccttcaattcttctaaatgcaagacaatggcaaaaatgacggtggcgagaataaaattgctgagaaacaagagggaggtggttgtgcggcaaatgaggagagacattgctatgcttcttgaatcccatcaggatgccactgctcgtattagggtcgaacatgtaataagagaacaaaatatattacaagcaaatgagatcctcgagctcttctgtgaacttattgtggctaggttaacaattattgcaaagcaaaagcaatgtccagctgatttgaaagaggggatatcaagtttgattttcgctgccccaaggtgctcagatattccagaattgatgggaatcaaagatgtttttgagaagaaatatggaaaagattttgtttcagcagcgactgacctgcgacccaatgctggtgtaaaccggacgctcattgaaaagctctctgtgaaaactccaagtggtgaagtcaaactaaaaatcatgaaagaaatagccaaagaataccaggttgaatgggacaccgcagattcagagatggagcttctcaagccaccagaagagcgtatagaaggaccaaatggctttgtaagtgccactagcttaccccctgaagccagcctcaaagcaacctgctgaacctaacaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="139850" stop="137000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139556" g_stop="139359" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139358" i_stop="139281" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139280" g_stop="139148" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="331" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139147" i_stop="138087" i_length="1061">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138086" g_stop="137983" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="435" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137982" i_stop="137895" i_length="88">
            <donor d_prob="0.646" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137894" g_stop="137723" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="607" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137722" i_stop="137612" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137611" g_stop="137471" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="748" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137470" i_stop="137381" i_length="90">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137380" g_stop="137300" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="830" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U575929" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139556" e_stop="139359"/>
          <exon e_start="139280" e_stop="139148"/>
          <exon e_start="138086" e_stop="137983"/>
          <exon e_start="137894" e_stop="137723"/>
          <exon e_start="137611" e_stop="137471"/>
          <exon e_start="137380" e_stop="137300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACGAAACGACCGTTACACATACAACTCTGTTCTCTTCTTCACTACCATTCTCACACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATGGTGAATTTCAATATTATTTCTTTTTTGAATAAAATCAATCCTTTTTTTTTTTACATTTTTTTTTGTGTGTGTATGCAGCAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGGGTACTTTTTTTCCATTTTCGTATTTAACCTCTGATTTAGGGTTGGGGCTTGTTTGTTTGATTGATTGATGGATGGATTAATGGAATAATTTTTATGTAATCTCGAAATCAAATCGTAGGAATGGGGAATTTGGTATATCATGCTTGGGGTGTCAGTCCGAGTCATGGTGGCTAGCTCTCTCCTGTTGCTGTTTAGAATTAGTATTGAAACCCTTGTGAATCATTTAGCTTGAAACATACAATTTTTGCTTTGCTTCAAGATTATAGGGTTTCTACATGGGGATAGAGCTGACTTCTTTTTAGGATCTTTTGGGGCTATTCACCAAAACCTGGAGGCTGTGATTAACTTAATCTCGTTGAAGTATCTTGATTGTAGTTATGATTTTTCTCATTCTGAAACACTTTGCTTACTTTAAAATTATGTGCTTTTGCTAAAACCCTCTTTGCTTCTTAATTTATACCATGGGATTTAGTTACTGAATTTCCCTCCTCCTCTAAGCTTTAACAGCTATGCTGGATGTCTACCTTAATTTTGAGCCAAGATACCTCTGCCATACCTCTTTCTGGTTGTGCCTAAAGATTAGACTAATCAATGTGATATGAAATAACTCTTCTATTTAATGCAAAGTCGAGGGTATATTGGAAACAACTACTTTACTCAACAAATGTATGGGTACGATCTCATACATCCTACCCTCCCCCAGACCTCACAGACCTCACTTGTAGGATTACACTGGGCATGACATTGTGGGTGATCTTGAAGTTGCTTAAAAAGACCCATAATATTATGCACTATGAGGGGGCAGAAATACATTGTGTGTTTATCTTTTGGGCAAGAGATTTTGTTGAAAGTTATCTTTCACGTCTATAATGGTGGATATCAATAAACCTCTTCTATTTTGATACACCAACATGTGATTTTAGAATGACATATTTTTCAAGTTAAAGTGGAATCTTCTTACTTCTATTGCTCATGATCCTTCTTAAGAAGTTACTTTTCTTAGGGTTGTCTCTTTCTACTAATCGTTTGGAAAGAACACTCACATGCTTCATTTTTTATAGGTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAAGTAAGATGTCTCAAGCTATTAATTTTTTTTAAGGTTAGAAGACAAAGCTCACAAATAACCTTGATTTCTATTTATCTGCCTGTTGCAGGCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACGGTAATCATATTTCTTCTCTTGAAACTTGTGGTTCTCTTTATCATAATAAATATATCTATATTTATGTGCTTGGGAGAGGGGTCTAAGAGAAGTGGGTAATTGTTGCTACAGCTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAATAGCCAAAGAATACCAGGTTGAATGGGACACCGCAGATTCAGAGATGGAGCTTCTCAAGCCACCAGAAGAGCGTATAGTGTGTCTCTATCTCAAATCCATCTATATCTGAATATGATGCCTAACGTGTTAGATGACCATCTAACTAGCAACTATTCTCTTTGATCAGGAAGGACCAAATGGCTTTGTAAGTGCCACTAGCTTA-CCCCTGAAGCCAGCCTCAAAGCAACCTGCTGAGCCTAACAACCTC</genome_strand>
        <mrna_strand>GAATTGGAAACGACCGTTACACATACAACTCTGTTCTCTTCTTCACTACCATTCTCACACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATG..............................................................................CAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAA........................................................................................GCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACG...............................................................................................................CTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAATAGCCAAAGAATACCAGGTTGAATGGGACACCGCAGATTCAGAGATGGAGCTTCTCAAGCCACCAGAAGAGCGTATA..........................................................................................GAAGGACCAAATGGCTTTGTAAGTGCCACTAGCTTACCCCCTGAAGCCAGCCTCAAAGCAACCTGCTGAACCTAACAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U587743" ref_strand="+" ref_description="SGN-U587743 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|79497106|ref|NP_195298.2| (e_value=7e-70) unknown; (*ATH) AT4G35730.1 (e_value=6e-72)  Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At1g34220.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:XP_480332.1); contains InterPro domain Eukaryotic protein of unknown fu... ; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=3e-19) IST1-like protein OS=Dictyostelium discoideum GN=DDB_0188219; ">
      <seq>acacactcttctcatcgcttcactctctctctctcttttaacaagaaaatgacagtagcaaacgctgccaccaagcactgcaagaaggccatgaagatgggtctttctctcttctgcagaaccttcaattcttctaaatgcaagacaatggcaaaaatgacggtggcgagaataaaattgctgagaaacaagagggaggtggttgtgcggcaaatgaggagagacattgctatgcttcttgaatcccatcaggatgccactgctcgtattagggtcgaacatgtaataagagaacaaaatatattacaagcaaatgagatcctcgagctcttctgtgaacttattgtggctaggttaacaattattgcaaagcaaaagtaagatgtctcaagctattaattttttttaaggttagaagacaaagctcacaaataaccttgatttctatttatctgcctgttgcaggcaatgtccagctgatttgaaagaggggatatcaagtttgattttcgctgccccaaggtgctcagatattccagaattgatgggaatcaaagatgtttttgagaagaaatatggaaaagattttgtttcagcagcgactgacctgcgacccaatgctggtgtaaaccggacgctcattgaaaagctctctgtgaaaactccaagtggtgaagtcaaactaaaaatcatgaaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="139798" stop="137247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139498" g_stop="139359" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139358" i_stop="139281" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="139280" g_stop="139148" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="273" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="139147" i_stop="138087" i_length="1061">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138086" g_stop="137723" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="637" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137722" i_stop="137612" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137611" g_stop="137547" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="702" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U587743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U587743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139498" e_stop="139359"/>
          <exon e_start="139280" e_stop="139148"/>
          <exon e_start="138086" e_stop="137723"/>
          <exon e_start="137611" e_stop="137547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATGGTGAATTTCAATATTATTTCTTTTTTGAATAAAATCAATCCTTTTTTTTTTTACATTTTTTTTTGTGTGTGTATGCAGCAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGGGTACTTTTTTTCCATTTTCGTATTTAACCTCTGATTTAGGGTTGGGGCTTGTTTGTTTGATTGATTGATGGATGGATTAATGGAATAATTTTTATGTAATCTCGAAATCAAATCGTAGGAATGGGGAATTTGGTATATCATGCTTGGGGTGTCAGTCCGAGTCATGGTGGCTAGCTCTCTCCTGTTGCTGTTTAGAATTAGTATTGAAACCCTTGTGAATCATTTAGCTTGAAACATACAATTTTTGCTTTGCTTCAAGATTATAGGGTTTCTACATGGGGATAGAGCTGACTTCTTTTTAGGATCTTTTGGGGCTATTCACCAAAACCTGGAGGCTGTGATTAACTTAATCTCGTTGAAGTATCTTGATTGTAGTTATGATTTTTCTCATTCTGAAACACTTTGCTTACTTTAAAATTATGTGCTTTTGCTAAAACCCTCTTTGCTTCTTAATTTATACCATGGGATTTAGTTACTGAATTTCCCTCCTCCTCTAAGCTTTAACAGCTATGCTGGATGTCTACCTTAATTTTGAGCCAAGATACCTCTGCCATACCTCTTTCTGGTTGTGCCTAAAGATTAGACTAATCAATGTGATATGAAATAACTCTTCTATTTAATGCAAAGTCGAGGGTATATTGGAAACAACTACTTTACTCAACAAATGTATGGGTACGATCTCATACATCCTACCCTCCCCCAGACCTCACAGACCTCACTTGTAGGATTACACTGGGCATGACATTGTGGGTGATCTTGAAGTTGCTTAAAAAGACCCATAATATTATGCACTATGAGGGGGCAGAAATACATTGTGTGTTTATCTTTTGGGCAAGAGATTTTGTTGAAAGTTATCTTTCACGTCTATAATGGTGGATATCAATAAACCTCTTCTATTTTGATACACCAACATGTGATTTTAGAATGACATATTTTTCAAGTTAAAGTGGAATCTTCTTACTTCTATTGCTCATGATCCTTCTTAAGAAGTTACTTTTCTTAGGGTTGTCTCTTTCTACTAATCGTTTGGAAAGAACACTCACATGCTTCATTTTTTATAGGTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAAGTAAGATGTCTCAAGCTATTAATTTTTTTTAAGGTTAGAAGACAAAGCTCACAAATAACCTTGATTTCTATTTATCTGCCTGTTGCAGGCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACGGTAATCATATTTCTTCTCTTGAAACTTGTGGTTCTCTTTATCATAATAAATATATCTATATTTATGTGCTTGGGAGAGGGGTCTAAGAGAAGTGGGTAATTGTTGCTACAGCTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAAT</genome_strand>
        <mrna_strand>ACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATG..............................................................................CAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAAGTAAGATGTCTCAAGCTATTAATTTTTTTTAAGGTTAGAAGACAAAGCTCACAAATAACCTTGATTTCTATTTATCTGCCTGTTGCAGGCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACG...............................................................................................................CTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U565641" ref_strand="+" ref_description="SGN-U565641 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|12698918|gb|AAK01735.1|AF335589_2 (e_value=1e-60) hypothetical; (*ATH) AT4G35720.1 (e_value=1e-39) | Symbol: None | expressed protein, contains Pfam profile PF03087: Arabidopsis protein of unknown function | chr4:16927977-16929175 FORWARD | Aliases: F8D20.230, F8D20_230; ">
      <seq>gatgaacataacctgttttgtaaaaggaaaaaaaaaatgaacctttcaacaattcgaacaatggctgctccttccccaaggtctcattctcataactcttaccgtacccgttgtgttagttttcctgctagatcacaccccagcacaatcaagattgagcaagttttgaacaaaatcaaaacttgggaatcatcttctcctttatctccaaaagcagaagaaaaaacccaaaatgccctgtcaagcggccttgtagaattgtacgagtgtatagaggaactccttgcgttgccaatgactcagagggcgcttctccagcatcaagatgacaattttgtgaaggaattgctggaaagatcagtgagattcatagatatctgtagcaatacaagggataccgttatgtgtttgaaagaaagcgtgagagaactacaatccgcgcttcgaagaagcaaagctggagatgatttattgactattgagggtagtgttagtgcttatatttcttcaagaaaaaacgctcaaaaggaaattgaaaaatcccttactatactgaaacagatacataacaccccatcagccacaatgaaagactctcagctctctgctataataagagttcttgaagatgccagtttcacaactatttctactttccagtcattgctgatgtttctttatgtgccagcctcgaaaccaaagtccaataaatggtcattggtttcgaagctagtacataaaggggttgtaggcagtgaagggcaaagggaaaagctaactgagttggagaaagttgacactgcactcaacagcttgctggatcatgtttctggacatgaagaggaagtggaaagttttgaatttgcgcaaaagaatctggagaatttggagagtagcattgaggatcttgaaaatggattggaaatgttgttcaagcttttgatccggacaagggtgtctctactcaacatactttctctcagtagataaattgaggtatcatgcataacagctcaattatttttttgcatgattgaagctgtgatgtatagatattgaatttctagtcattgagtactgtagatgaacatattgtgtatagtattagcagctaagggtgaagaggattaagaaacatggacaaagttttccaatttcctaatctttttctctgtttgtcttttgtgttattccagttttacagattagtgccaaaattttgcagaggtgctaattctggccaagattagttattatttggacttgaggcccaaagaagtccaagagtgtgtgcaagtaacatgtagctgtcaatgggctgatatgatatgagtaggcccattcagtatttcagtccattaagggattttagccctttcttgtgtatgttcattctgtactatataatccattaattaatggatctaattgctcattgtgtatgaaatttgtgaatttttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="143647" stop="141585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143348" g_stop="141884" g_length="1465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1465" r_length="1465" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U565641" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143348" e_stop="141884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAACATAACCTGTTTTGTAAAAGGAAAAAAAAAATGAACCTTTCAACAATTCGAACAATGGCTGCTCTTTCCCCAAGGTCTCATTCTCATAACTCTTACCGTACCCGTTGTGTTAGTTTTCCTGCTAGATCACACCCCAGCACAATCAAGATTGAGCAAGTTTTGAACAAAATCAAAACTTGGGAATCATCTTCTCCTTTATCTCCAAAAGCAGAAGAAAAAACCCAAAATGCCCTGTCAAGCGGCCTTGTAGAATTGTACGAGTGTATAGAGGAACTCCTTGCGTTGCCAATGACTCAGAGGGCGCTTCTCCAGCATCAAGATGACAATTTTGTGAAGGAATTGCTGGAAAGATCAGTGAGATTCATAGATATCTGTAGCAATACAAGGGATACCGTTATGTGTTTGAAAGAAAGCGTGAGAGAACTACAATCCGCGCTTCGAAGAAGCAAAGCTGGAGATGATTTATTGACTATTGAGGGTAGTGTTAGTGCTTATATTTCTTCAAGAAAAAACGCTCAAAAGGAAATTGAAAAATCCCTTACTATACTGAAACAGATACATAACACCCCATCAGCCACAATGAAAGACTCTCAGCTCTCTGCTATAATAAGAGTTCTTGAAGATGCCAGTTTCACAACTATTTCTACTTTCCAGTCATTGCTGATGTTTCTTTATGTGCCAGCCTCGAAACCAAAGTCCAATAAATGGTCATTGGTTTCGAAGCTAGTACATAAAGGGGTTGTAGGCAGTGAAGGGCAAAGGGAAAAGCTAACTGAGTTGGAGAAAGTTGACACTGCACTCAACAGCTTGCTGGATCATGTTTCTGGACATGAAGAGGAAGTGGAAAGTTTTGAATTTGCACAAAAGAATCTGGAGAATTTGGAGAGTAGCATTGAGGATCTTGAAAATGGATTGGAAATGTTGTTCAAGCTTTTGATCCGGACAAGGGTGTCTCTACTCAACATACTTTCTCTCAGTAGATAAATTGAGGTATCATGCATAACAGCTCAAGTATTTTTTTGCATGATTGAAGCTGTGATGTATAGATATTGAATTTCTAGTCATTGAGTACTGTAGATGAACATATTGTGTATAGTATTAGCAGCTAAGGGTGAAGAGGATTAAGAAACATGGACAAAGTTTTCCAATTTCCTAATCTTTTTCTCTGTTTGTCTTTTGTGTTATTCCAGTTTTACAGATTAGTGCCAAAATTTTGCAGAGGTGCTAATTCTGGCCAAGATTAGTTATTATTTGGACTTGAGGCCCAAAGAAGTCCAAGAGTGTGTGCAAGTAACATGTAGCTGTCAATGGGCTGATATGATATGAGTAGGCCCATTCAGTATTTCAGTCCATTAAGGGATTTTAGCCCTTTCTTGTGTATGTTCATTCTGTACTATATAATCCATTAATTAATGGATCTAATTGCTCATTGTGTATGAAATTTGTGAATTTTTTTTTT</genome_strand>
        <mrna_strand>GATGAACATAACCTGTTTTGTAAAAGGAAAAAAAAAATGAACCTTTCAACAATTCGAACAATGGCTGCTCCTTCCCCAAGGTCTCATTCTCATAACTCTTACCGTACCCGTTGTGTTAGTTTTCCTGCTAGATCACACCCCAGCACAATCAAGATTGAGCAAGTTTTGAACAAAATCAAAACTTGGGAATCATCTTCTCCTTTATCTCCAAAAGCAGAAGAAAAAACCCAAAATGCCCTGTCAAGCGGCCTTGTAGAATTGTACGAGTGTATAGAGGAACTCCTTGCGTTGCCAATGACTCAGAGGGCGCTTCTCCAGCATCAAGATGACAATTTTGTGAAGGAATTGCTGGAAAGATCAGTGAGATTCATAGATATCTGTAGCAATACAAGGGATACCGTTATGTGTTTGAAAGAAAGCGTGAGAGAACTACAATCCGCGCTTCGAAGAAGCAAAGCTGGAGATGATTTATTGACTATTGAGGGTAGTGTTAGTGCTTATATTTCTTCAAGAAAAAACGCTCAAAAGGAAATTGAAAAATCCCTTACTATACTGAAACAGATACATAACACCCCATCAGCCACAATGAAAGACTCTCAGCTCTCTGCTATAATAAGAGTTCTTGAAGATGCCAGTTTCACAACTATTTCTACTTTCCAGTCATTGCTGATGTTTCTTTATGTGCCAGCCTCGAAACCAAAGTCCAATAAATGGTCATTGGTTTCGAAGCTAGTACATAAAGGGGTTGTAGGCAGTGAAGGGCAAAGGGAAAAGCTAACTGAGTTGGAGAAAGTTGACACTGCACTCAACAGCTTGCTGGATCATGTTTCTGGACATGAAGAGGAAGTGGAAAGTTTTGAATTTGCGCAAAAGAATCTGGAGAATTTGGAGAGTAGCATTGAGGATCTTGAAAATGGATTGGAAATGTTGTTCAAGCTTTTGATCCGGACAAGGGTGTCTCTACTCAACATACTTTCTCTCAGTAGATAAATTGAGGTATCATGCATAACAGCTCAATTATTTTTTTGCATGATTGAAGCTGTGATGTATAGATATTGAATTTCTAGTCATTGAGTACTGTAGATGAACATATTGTGTATAGTATTAGCAGCTAAGGGTGAAGAGGATTAAGAAACATGGACAAAGTTTTCCAATTTCCTAATCTTTTTCTCTGTTTGTCTTTTGTGTTATTCCAGTTTTACAGATTAGTGCCAAAATTTTGCAGAGGTGCTAATTCTGGCCAAGATTAGTTATTATTTGGACTTGAGGCCCAAAGAAGTCCAAGAGTGTGTGCAAGTAACATGTAGCTGTCAATGGGCTGATATGATATGAGTAGGCCCATTCAGTATTTCAGTCCATTAAGGGATTTTAGCCCTTTCTTGTGTATGTTCATTCTGTACTATATAATCCATTAATTAATGGATCTAATTGCTCATTGTGTATGAAATTTGTGAATTTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U572565" ref_strand="-" ref_description="SGN-U572565 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|30697152|ref|NP_851217.1| (e_value=1e-131) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G58960.1 (e_value=1e-133) | Symbol: None | expressed protein, contains Pfam profile PF04859: Plant protein of unknown function (DUF641 | chr5:23822943-23825701 FORWARD | Aliases: K19M22.15, K19M22_15; ">
      <seq>agtaatgcatgactaatttatgtccatcccaaacttaaacccatttttggggactaaataaaccctagccttaacaactgatccatttccaagcttaaacccgggactaactggaaacccgacaactagacccatacccattctccctcctatccccatggaaatggaatacttcaccacactttccatgtacttggggtgaaactccgatccattgcttgtctcaaagtgacttggcggaggatccaaagaaaaggccagcaaatgcagcagccaaacggcctttgctagcccaagaaactctccgtaaaactgactcctcggatggttcccagccagtacctgacgcctctgctccaaatcaccaaacaaagactcctccattttaggatgcacgatggccaaatacttcttgaaacagaagttccattgggtccatggctttcatgtccctgtactgtgtataacactcccggcggtgctggtctgggtggaggagtgatgacaagcttccgtccatgtagaacgtctcgtgatcgaatccttggaacattttgcggttcacataagattccagtgcgtattttgcatggttggctccgacaattgaatccgccgttggtgtggtggagttagatgaagcagcttcaatggatctcactgccgccgcaatgtcccagtgagcagagcgcatcaaagagaggagcatactcgtgaaggattttgaggcttcttttactgagctcactgtagattcgaacaggtcaggtgccggcgacatattaactggagcttgactgctgcagttaactctccgttttgacttgtttttctttccactattgctgctaagcaacgtcgccgtttttagcttttccttcaaatcatcgatctcaatatcctttgccttcacctcttgcttcagttcttccacggctgactcatacggcgccaccacttctctcagcgtcgccaccccgactctccagtcccctctttcacttccaccgccgacattccgccggaatctttccctcaacactccaagccttcgcagttcagatatcacagccacgtcagccacgcgcattttatcctgatcccaaggacaatgcgcctcctgtagactaacgtaagccttcttcattgccgacactgcatcaaacacttcccctaaaagcatttccatttcatttactttctcagttcttatctcctcattttttacctcgaaattctggaatttttccagagtttccacataaggtgagtgttcttcttcttcttcttcggtagtgtacttgtcatcttcagattcgtcggcgtcacgagcaccagagatgtggccgttggaggaaagtgggtggagcaagcaagaagcagtgacacgttggatcagatccgagaaattggaaaccttgttggccattgtctaacacagtagcagcaattttgggatcaaaagtgaaacaagacttgacagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0060J03-rFSNs/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0060J03.2" temp_strand="-" temp_description="C02HBa0060J03.2  AC215372.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0060J03 sequenced_by:kribb upload_account_name:korea">
        <position start="150426" stop="148702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150426" g_stop="150102" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="421" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150101" i_stop="150067" i_length="35">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150066" g_stop="149002" g_length="1065"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="1486" r_length="1065" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0060J03.2" gen_strand="-" ref_id="SGN-U572565" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1390</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0060J03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572565" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="150426" e_stop="150102"/>
          <exon e_start="150066" e_stop="149002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCGGGACTAACTGGAAACCCGACAACTAGACCCATACCCATTCTCCCTCCTATCCCCATGGAAATGGAATACTTCACCACACTTTCCATGTACTTGGGGTGAAACTCCGATCCATTGCTTGTCTCAAAGTGACTTGGCGGAGGATCCAAAGAAAAGGCCAGCAAATGCAGCAGCCAAACGGCCTTTGCTAGCCCAAGAAACTCTCCGTAAAACTGACTCCTCGGATGGTTCCCAGCCAGTACCTGACGCCTCTGCTCCAAATCACCAAACAAAGACTCCTCCATTTTAGGATGCACGATGGCCAAATACTTCTTGAAACAGAAGTTCCCAAAACTACAAGTTGGGAGAATTCCCAGAAGTTCCATTGGGTCCATGGCTTTCATGTCCCTGTACTGTGTATAACACTCCCGGCGGTGCTGGTCTGGGTGGAGGAGTGATGACAAGCTTCCGTCCATGTAGAACGTCTCGTGATCGAATCCTTGGAACATTTTGCGGTTCACATAAGATTCCAGTGCGTATTTTGCATGGTTGGCTCCGACAATTGAATCCGCCGTTGGTGTGGTGGAGTTAGATGAAGCAGCTTCAATGGATCTCACTGCCGCCGCAATGTCCCAGTGAGCAGAGCGCATCAAAGAGAGGAGCATACTCGTGAAGGATTTTGAGGCTTCTTTTACTGAGCTCACTGTAGATTCGAACAGGTCAGGTGCCGGCGACATATTAACTGGAGCTTGACTGCTGCAGTTAACTCTCCGTTTTGACTTGTTTTTCTTTCCACTATTGCTGCTAAGCAACGTCGCCGTTTTTAGCTTTTCCTTCAAATCATCGATCTCAATATCCTTTGCCTTCACCTCTTGCTTCAGTTCTTCCACGGCTGACTCATACGGCGCCACCACTTCTCTCAGCGTCGCCACCCCGACTCTCCAGTCCCCTCTTTCACTTCCACCGCCGACATTCCGCCGGAATCTTTCCCTCAACACTCCAAGCCTTCGCAGTTCAGATATCACAGCCACGTCAGCCACGCGCATTTTATCCTGATCCCAAGGACAATGCGCCTCCTGTAGACTAACGTAAGCCTTCTTCATTGCCGACACTGCATCAAACACTTCCCCTAAAAGCATTTCCATTTCATTTACTTTCTCAGTTCTTATCTCCTCATTTTTTACCTCGAAATTCTGGAATTTTTCCAGAGTTTCCACATAAGGTGAGTGTTCTTCTTCTTCTTCTTCGGTAGTGTACTTGTCATCTTCAGATTCGTCGGCGTCACGAGCACCAGAGATGTGGCCGTTGGAGGAAAGTGGGTGGAGCAAGCAAGAAGCAGTGACACGTTGGATCAGATCCGAGAAATTGGAAACCTTGTTGGCCATTGTCTAACACAGTAGCAGCAATTTTGGGATCAAAAGTGAAACAAGACTTGACAGTCC</genome_strand>
        <mrna_strand>AAACCCGGGACTAACTGGAAACCCGACAACTAGACCCATACCCATTCTCCCTCCTATCCCCATGGAAATGGAATACTTCACCACACTTTCCATGTACTTGGGGTGAAACTCCGATCCATTGCTTGTCTCAAAGTGACTTGGCGGAGGATCCAAAGAAAAGGCCAGCAAATGCAGCAGCCAAACGGCCTTTGCTAGCCCAAGAAACTCTCCGTAAAACTGACTCCTCGGATGGTTCCCAGCCAGTACCTGACGCCTCTGCTCCAAATCACCAAACAAAGACTCCTCCATTTTAGGATGCACGATGGCCAAATACTTCTTGAAACAG...................................AAGTTCCATTGGGTCCATGGCTTTCATGTCCCTGTACTGTGTATAACACTCCCGGCGGTGCTGGTCTGGGTGGAGGAGTGATGACAAGCTTCCGTCCATGTAGAACGTCTCGTGATCGAATCCTTGGAACATTTTGCGGTTCACATAAGATTCCAGTGCGTATTTTGCATGGTTGGCTCCGACAATTGAATCCGCCGTTGGTGTGGTGGAGTTAGATGAAGCAGCTTCAATGGATCTCACTGCCGCCGCAATGTCCCAGTGAGCAGAGCGCATCAAAGAGAGGAGCATACTCGTGAAGGATTTTGAGGCTTCTTTTACTGAGCTCACTGTAGATTCGAACAGGTCAGGTGCCGGCGACATATTAACTGGAGCTTGACTGCTGCAGTTAACTCTCCGTTTTGACTTGTTTTTCTTTCCACTATTGCTGCTAAGCAACGTCGCCGTTTTTAGCTTTTCCTTCAAATCATCGATCTCAATATCCTTTGCCTTCACCTCTTGCTTCAGTTCTTCCACGGCTGACTCATACGGCGCCACCACTTCTCTCAGCGTCGCCACCCCGACTCTCCAGTCCCCTCTTTCACTTCCACCGCCGACATTCCGCCGGAATCTTTCCCTCAACACTCCAAGCCTTCGCAGTTCAGATATCACAGCCACGTCAGCCACGCGCATTTTATCCTGATCCCAAGGACAATGCGCCTCCTGTAGACTAACGTAAGCCTTCTTCATTGCCGACACTGCATCAAACACTTCCCCTAAAAGCATTTCCATTTCATTTACTTTCTCAGTTCTTATCTCCTCATTTTTTACCTCGAAATTCTGGAATTTTTCCAGAGTTTCCACATAAGGTGAGTGTTCTTCTTCTTCTTCTTCGGTAGTGTACTTGTCATCTTCAGATTCGTCGGCGTCACGAGCACCAGAGATGTGGCCGTTGGAGGAAAGTGGGTGGAGCAAGCAAGAAGCAGTGACACGTTGGATCAGATCCGAGAAATTGGAAACCTTGTTGGCCATTGTCTAACACAGTAGCAGCAATTTTGGGATCAAAAGTGAAACAAGACTTGACAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>30</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7457" PGL_stop="10778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7457" e_stop="8723"/>
            <exon e_start="8812" e_stop="8911"/>
            <exon e_start="9228" e_stop="9377"/>
            <exon e_start="10157" e_stop="10229"/>
            <exon e_start="10310" e_stop="10778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="0.932"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="7457" e_stop="8723" e_length="1267"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8812" e_stop="8911" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9377" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9378" i_stop="10156" i_length="779"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10157" e_stop="10229" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="10310" e_stop="10778" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7457" stop="8723"/>
              <exon start="8812" stop="8911"/>
              <exon start="9228" stop="9377"/>
              <exon start="10157" stop="10229"/>
              <exon start="10310" stop="10778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGTTACACCTTGAATGTGGATTATCTGTAATCTTTCTGAAACTTTATGATGTATGTATTCTCTTTCGTTGCTTGTCATTTTGTTGTCTTCATGGTCGTGACATCGTTTACGATATCTGTTGGTTCATTCTTACAT</gDNA_template>
            <first_frame> S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  A  S  F  A  L  S  N  L  P  L  Y  L  S  S  I  *  H  I  C  V  F  L  H  I  F  R  I  F  *  P  N  *  L  S  K  Q  Q  I  L  S  S  L  *  F  L  A  G  *  F  S  T  Q  K  V  P  L  C  F  F  I  E  L  *  G  F  S  V  Y  L  L  H  R  L  D  P  S  N  F  P  *  L  V  L  S  L  L  G  F  F  C  L  Y  F  A  D  L  Y  F  L  Y  L  V  V  G  L  V  N  G  E  Y  I  V  L  F  I  R  L  V  G  I  S  M  W  C  K  K  I  E  W  G  L  L  D  F  G  E  F  T  L  I  C  V  L  E  R  C  *  C  V  N  L  F  *  *  R  N  G  K  V  *  I  C  F  W  K  N  C  F  *  V  Y  H  V  E  L  V  F  R  L  F  Y  W  G  M  S  L  K  H  K  T  F  L  R  I  S  Y  F  V  Y  M  G  N  S  V  Y  N  K  V  I  N  P  M  P  Y  L  C  K  G  *  G  S  I  F  S  L  S  L  I  *  S  N  V  F  Q  G  T  S  *  *  S  L  P  L  Y  G  R  Q  R  S  S  Y  L  L  I  K  L  V  I  C  *  V  F  L  E  L  E  S  T  N  Q  P  L  W  I  S  F  W  H  F  L  Q  V  K  L  L  S  M  L  M  E  N  T  L  T  *  P  *  R  C  I  S  V  F  F  L  H  A  N  R  S  P  T  D  F  L  L  S  H  C  L  *  *  Y  *  L  T  *  K  F  Y  E  L  H  I  L  E  K  D  T  I  I  T  R  G  T  I  F  K  D  M  W  L  V  L  I  N  W  F  N  V  V  L  I  G  L  P  G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  L  H  L  E  C  G  L  S  V  I  F  L  K  L  Y  D  V  C  I  L  F  R  C  L  S  F  C  C  L  H  G  R  D  I  V  Y  D  I  C  W  F  I  L  T  </first_frame>
            <second_frame>  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W  Q  A  L  L  S  L  I  S  H  Y  I  F  L  L  F  N  I  Y  V  F  F  C  I  F  S  E  F  F  N  L  I  N  C  R  N  N  K  F  Y  H  L  Y  D  F  L  Q  A  D  S  P  R  K  R  Y  H  S  V  S  L  *  N  F  E  D  F  L  F  I  C  C  I  D  L  I  R  L  T  F  R  N  W  F  Y  L  Y  *  G  F  F  V  C  I  S  L  I  Y  I  F  F  I  W  L  L  A  L  *  M  V  N  T  L  F  Y  S  S  G  *  L  G  Y  L  C  G  V  K  K  L  N  G  V  C  W  I  L  G  S  S  L  *  F  V  F  W  R  D  V  N  V  L  I  F  F  N  R  E  M  V  R  Y  E  S  V  F  G  R  I  V  F  K  F  I  M  *  N  *  F  S  V  C  F  I  G  E  C  H  *  S  I  K  H  F  *  E  S  H  I  L  Y  I  W  V  I  L  Y  I  I  K  S  L  I  L  C  L  T  Y  A  R  D  K  V  Q  F  F  L  S  L  *  F  E  V  M  F  S  R  E  H  P  N  E  V  S  H  C  M  V  V  K  D  P  P  T  Y  *  *  N  W  S  Y  A  K  S  F  L  S  *  K  V  P  I  N  L  Y  G  *  V  F  G  I  F  Y  K  *  N  C  *  A  C  *  W  R  T  H  *  H  S  L  S  D  A  F  L  F  S  F  C  T  Q  I  D  L  Q  R  I  F  F  *  A  T  V  F  S  S  I  S  *  H  R  N  F  M  S  Y  I  Y  L  K  K  I  P  S  L  L  E  E  P  S  L  K  T  C  G  W  C  *  *  T  G  S  M  L  Y  L  L  D  S  Q  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G  Y  T  L  N  V  D  Y  L  *  S  F  *  N  F  M  M  Y  V  F  S  F  V  A  C  H  F  V  V  F  M  V  V  T  S  F  T  I  S  V  G  S  F  L  H </second_frame>
            <third_frame>   N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N  G  K  L  C  S  L  *  S  P  I  I  S  F  F  Y  L  T  Y  M  C  F  F  A  Y  F  Q  N  F  L  T  *  L  I  V  E  T  T  N  F  I  I  F  M  I  S  C  R  L  I  L  H  A  K  G  T  T  L  F  L  Y  R  T  L  R  I  F  C  L  F  V  A  S  T  *  S  V  *  L  S  V  I  G  F  I  F  I  R  V  F  L  S  V  F  R  *  S  I  F  S  L  F  G  C  W  P  C  E  W  *  I  H  C  F  I  H  Q  A  S  W  D  I  Y  V  V  *  K  N  *  M  G  F  V  G  F  W  G  V  H  F  D  L  C  F  G  E  M  L  M  C  *  S  F  L  I  E  K  W  *  G  M  N  L  F  L  E  E  L  F  L  S  L  S  C  R  I  S  F  P  F  V  L  L  G  N  V  T  E  A  *  N  I  S  E  N  L  I  F  C  I  Y  G  *  F  C  I  *  *  S  H  *  S  Y  A  L  L  M  Q  G  I  R  F  N  F  F  S  L  F  D  L  K  *  C  F  P  G  N  I  L  M  K  S  P  T  V  W  S  S  K  I  L  L  L  I  D  K  I  G  H  M  L  S  L  S  *  V  R  K  Y  Q  S  T  F  M  D  K  F  L  A  F  F  T  S  K  I  V  E  H  V  N  G  E  H  T  N  I  A  L  A  M  H  F  C  F  L  F  A  R  K  *  I  S  N  G  F  S  F  K  P  L  S  L  V  V  L  V  D  I  E  I  L  *  A  T  Y  T  *  K  R  Y  H  H  Y  S  R  N  H  L  *  R  H  V  V  G  V  N  K  L  V  Q  C  C  T  Y  W  T  P  R  Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W  V  T  P  *  M  W  I  I  C  N  L  S  E  T  L  *  C  M  Y  S  L  S  L  L  V  I  L  L  S  S  W  S  *  H  R  L  R  Y  L  L  V  H  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8557" stop="8723"/>
                    <exon start="8812" stop="8911"/>
                    <exon start="9228" stop="9377"/>
                    <exon start="10157" stop="10229"/>
                    <exon start="10310" stop="10539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHVVGVNKLVQCCTYWTPRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRGGRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7491" stop="7694"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLHHPKWQALLSLISHYIFLLFNIYVFFCIFSEFFNLINCRNNKFYHLYDFLQADSPRKRYHSVSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7754" stop="7954"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLGFFCLYFADLYFLYLVVGLVNGEYIVLFIRLVGISMWCKKIEWGLLDFGEFTLICVLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9859" e_stop="10229"/>
            <exon e_start="10310" e_stop="10646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9859" e_stop="10229" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="10310" e_stop="10646" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9859" stop="10229"/>
              <exon start="10310" stop="10646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592251" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTTGCTTTTTTTTGGCACAGATTAGTTGAATGTTATATTCTTCCTTTAGGAGTGCATTTGGTGATTCTCTTTTCTTTGGATGTTAGCATCATAGGTTATGATTTCATAGAATTACAAATATTTCTGTTTTTTTTTGTTGTGAAGAGAACACCCGATATTAGCAATTTCATATTCTTCCATTACAAGGAATTCATTCTCTAGAATACATTATCTGGTCGAGATAACCCATTTGTTCTTGATGTAAATCACATATGTTCAGATTTCACATATTGAGATGATCTATTTTGTTTTTCAGTCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACCCTCGTGGTTATAGATAAGTGGGTTTCGTCCTCAGCTATGGAAACTGCTTTTGTAAGGATCTATAAGTTTGATGTGGACTAGTCTTGATGTTAAAGAGTACTGGTTAATGAATGTATGTCTGGGT</gDNA_template>
            <first_frame> R  L  A  F  F  W  H  R  L  V  E  C  Y  I  L  P  L  G  V  H  L  V  I  L  F  S  L  D  V  S  I  I  G  Y  D  F  I  E  L  Q  I  F  L  F  F  F  V  V  K  R  T  P  D  I  S  N  F  I  F  F  H  Y  K  E  F  I  L  *  N  T  L  S  G  R  D  N  P  F  V  L  D  V  N  H  I  C  S  D  F  T  Y  *  D  D  L  F  C  F  S  V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L  P  S  W  L  *  I  S  G  F  R  P  Q  L  W  K  L  L  L  *  G  S  I  S  L  M  W  T  S  L  D  V  K  E  Y  W  L  M  N  V  C  L  G </first_frame>
            <second_frame>  D  L  L  F  F  G  T  D  *  L  N  V  I  F  F  L  *  E  C  I  W  *  F  S  F  L  W  M  L  A  S  *  V  M  I  S  *  N  Y  K  Y  F  C  F  F  L  L  *  R  E  H  P  I  L  A  I  S  Y  S  S  I  T  R  N  S  F  S  R  I  H  Y  L  V  E  I  T  H  L  F  L  M  *  I  T  Y  V  Q  I  S  H  I  E  M  I  Y  F  V  F  Q  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  P  R  G  Y  R  *  V  G  F  V  L  S  Y  G  N  C  F  C  K  D  L  *  V  *  C  G  L  V  L  M  L  K  S  T  G  *  *  M  Y  V  W   </second_frame>
            <third_frame>   T  C  F  F  L  A  Q  I  S  *  M  L  Y  S  S  F  R  S  A  F  G  D  S  L  F  F  G  C  *  H  H  R  L  *  F  H  R  I  T  N  I  S  V  F  F  C  C  E  E  N  T  R  Y  *  Q  F  H  I  L  P  L  Q  G  I  H  S  L  E  Y  I  I  W  S  R  *  P  I  C  S  *  C  K  S  H  M  F  R  F  H  I  L  R  *  S  I  L  F  F  S  L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T  L  V  V  I  D  K  W  V  S  S  S  A  M  E  T  A  F  V  R  I  Y  K  F  D  V  D  *  S  *  C  *  R  V  L  V  N  E  C  M  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10140" stop="10229"/>
                    <exon start="10310" stop="10603"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILFFSLVENGQGLQHLVIILGFIRAQGVMVIMVIGVGIVAVVTMGTEDLQDVLHIEVGEIILPDTLHIEVGEIILLDAHLMLEGRDVRDPGHILLMKGTTLVVIDKWVSSSAMETAFVRIYKFDVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10106" stop="10229"/>
                    <exon start="10310" stop="10539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITYVQISHIEMIYFVFQSRRKRPRTPTPGHYLGLHQSARGDGYHGDRGRYRGRGDYGYRRSPRRSPYRGGRDYSPRHSPYRGGRDYSPRRSPYAGRSRRARSRSYSPYERNYPRGYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9859" stop="10062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLAFFWHRLVECYILPLGVHLVILFSLDVSIIGYDFIELQIFLFFFVVKRTPDISNFIFFHYKEFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8674" e_stop="8723"/>
            <exon e_start="8812" e_stop="8911"/>
            <exon e_start="9228" e_stop="9377"/>
            <exon e_start="9495" e_stop="9694"/>
            <exon e_start="10157" e_stop="10229"/>
            <exon e_start="10310" e_stop="10522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="0.980"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.069" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="8674" e_stop="8723" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8812" e_stop="8911" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9377" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9378" i_stop="9494" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9495" e_stop="9694" e_length="200"/>
          </exon>
          <intron i_serial="4" don_prob="0.069" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9695" i_stop="10156" i_length="462"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10157" e_stop="10229" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="10310" e_stop="10522" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8674" stop="8723"/>
              <exon start="8812" stop="8911"/>
              <exon start="9228" stop="9377"/>
              <exon start="9495" stop="9694"/>
              <exon start="10157" stop="10229"/>
              <exon start="10310" stop="10522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : CAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGTACCGAAGATCTCCAAGACGTTCTCCATATAGAGGTGGGCGAGATTATTCTCCCAGACACTCTCCATATAGAGGTGGGCGAGATTATTCTCCTAGACGCTCACCTTATGCTGGAAGGTCGAGACGTGCGCGATCCCGGTCATATTCTCCTTATGAAAGGAACTACC</gDNA_template>
            <first_frame> R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  *  S  R  V  I  I  N  N  R  I  R  L  L  C :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G  T  E  D  L  Q  D  V  L  H  I  E  V  G  E  I  I  L  P  D  T  L  H  I  E  V  G  E  I  I  L  L  D  A  H  L  M  L  E  G  R  D  V  R  D  P  G  H  I  L  L  M  K  G  T  T </first_frame>
            <second_frame>  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  S :   N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T  N  Q  G  S  L  S  T  I  E  S  G  F  Y   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W  V  P  K  I  S  K  T  F  S  I  *  R  W  A  R  L  F  S  Q  T  L  S  I  *  R  W  A  R  L  F  S  *  T  L  T  L  C  W  K  V  E  T  C  A  I  P  V  I  F  S  L  *  K  E  L   </second_frame>
            <third_frame>   I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q  L  I  K  G  H  Y  Q  Q  *  N  Q  A  F  M  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  Y  R  R  S  P  R  R  S  P  Y  R  G  G  R  D  Y  S  P  R  H  S  P  Y  R  G  G  R  D  Y  S  P  R  R  S  P  Y  A  G  R  S  R  R  A  R  S  R  S  Y  S  P  Y  E  R  N  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8674" stop="8723"/>
                    <exon start="8812" stop="8911"/>
                    <exon start="9228" stop="9377"/>
                    <exon start="9495" stop="9593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKQSKMISSSIATLYSLSLTKWPAKTAFHMHLID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9657" stop="9694"/>
                    <exon start="10157" stop="10229"/>
                    <exon start="10310" stop="10522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVIINNRIRLLCLVENGQGLQHLVIILGFIRAQGVMVIMVIGVGIVAVVTMGTEDLQDVLHIEVGEIILPDTLHIEVGEIILLDAHLMLEGRDVRDPGHILLMKGTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="7478" e_stop="7513"/>
            <exon e_start="7653" e_stop="7672"/>
            <exon e_start="8613" e_stop="8723"/>
            <exon e_start="8812" e_stop="8911"/>
            <exon e_start="9228" e_stop="9377"/>
            <exon e_start="9468" e_stop="9694"/>
            <exon e_start="10157" e_stop="10229"/>
            <exon e_start="10310" e_stop="10357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.069" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7478" e_stop="7513" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7514" i_stop="7652" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7653" e_stop="7672" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="7673" i_stop="8612" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8613" e_stop="8723" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8812" e_stop="8911" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9377" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.971">
            <gDNA_intron_boundary i_start="9378" i_stop="9467" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9468" e_stop="9694" e_length="227"/>
          </exon>
          <intron i_serial="6" don_prob="0.069" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9695" i_stop="10156" i_length="462"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="10157" e_stop="10229" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10230" i_stop="10309" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.979">
            <gDNA_exon_boundary e_start="10310" e_stop="10357" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7478" stop="7513"/>
              <exon start="7653" stop="7672"/>
              <exon start="8613" stop="8723"/>
              <exon start="8812" stop="8911"/>
              <exon start="9228" stop="9377"/>
              <exon start="9468" stop="9694"/>
              <exon start="10157" stop="10229"/>
              <exon start="10310" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG : TCTCGTAGAAAACGGCCAAGGACTCCAACACCTGGTCATTATCTTGGGCTTCATCAGAGCGCAAGGGGTGATG : GTTATCATGGTGATCGGGGTAGGTATCGTGGCCGTGGTGACTATGGGT</gDNA_template>
            <first_frame> I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  *  S  R  V  I  I  N  N  R  I  R  L  L  C :   L  V  E  N  G  Q  G  L  Q  H  L  V  I  I  L  G  F  I  R  A  Q  G  V  M  :  V  I  M  V  I  G  V  G  I  V  A  V  V  T  M  G </first_frame>
            <second_frame>  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R :   R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T  N  Q  G  S  L  S  T  I  E  S  G  F  Y   : V  S  *  K  T  A  K  D  S  N  T  W  S  L  S  W  A  S  S  E  R  K  G  *  W :   L  S  W  *  S  G  *  V  S  W  P  W  *  L  W   </second_frame>
            <third_frame>   W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q  L  I  K  G  H  Y  Q  Q  *  N  Q  A  F  M  :  S  R  R  K  R  P  R  T  P  T  P  G  H  Y  L  G  L  H  Q  S  A  R  G  D   : G  Y  H  G  D  R  G  R  Y  R  G  R  G  D  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7478" stop="7513"/>
                    <exon start="7653" stop="7672"/>
                    <exon start="8613" stop="8723"/>
                    <exon start="8812" stop="8911"/>
                    <exon start="9228" stop="9377"/>
                    <exon start="9468" stop="9593"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKKTLRQLCWQQSKMISSSIATLYSLSLTKWPAKTAFHMHLID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="7459" e_stop="7513"/>
            <exon e_start="7653" e_stop="7672"/>
            <exon e_start="8613" e_stop="8723"/>
            <exon e_start="8812" e_stop="8911"/>
            <exon e_start="9228" e_stop="9654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.982"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="7459" e_stop="7513" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7514" i_stop="7652" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7653" e_stop="7672" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="7673" i_stop="8612" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8613" e_stop="8723" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="8724" i_stop="8811" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8812" e_stop="8911" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8912" i_stop="9227" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9228" e_stop="9654" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7459" stop="7513"/>
              <exon start="7653" stop="7672"/>
              <exon start="8613" stop="8723"/>
              <exon start="8812" stop="8911"/>
              <exon start="9228" stop="9654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACT</gDNA_template>
            <first_frame> N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E  G  Q  L  F  I  H  *  L  V  N  H  C  S  V  G  L  L  F  F  F  L  D  L  E  V  F  *  L  Y  S  E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q   </first_frame>
            <second_frame>  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  V  S  Y  L  Y  I  D  W  *  T  I  V  L  L  A  C  F  S  F  F  L  T  W  R  F  S  D  Y  I  Q  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  </second_frame>
            <third_frame>   F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R  S  A  I  Y  T  L  I  G  E  P  L  F  C  W  L  A  F  L  F  S  *  L  G  G  F  L  I  I  F  R  R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7466" stop="7513"/>
                    <exon start="7653" stop="7672"/>
                    <exon start="8613" stop="8723"/>
                    <exon start="8812" stop="8911"/>
                    <exon start="9228" stop="9404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKVSYLYIDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="27710" PGL_stop="28066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27710" e_stop="28066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="27710" e_stop="28066" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27710" stop="28066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAAGATCCATGGAATTTGAATTGTAAGTCAGGTACTGGACCAGCTGAAAATTAAAATTTGAATAATTAATTAGTATTGATTATTAGTCCATTCTTATTTATTTTTTCATCTTCTTTTTCATGTATATATGTCTGTCCTAGACTTTGCATTTGGCTAATAATTAAGCATGACAATAAATGAATATTGTGCGATATTTGGTGGATCTATATGTGAATGTCCATAGCGTTACTGAGGCTATAACCAGCTTGTTTATATGGACTATTTTATTTTAGTTCCACTTTGATTTTTCTCTAAAATAATGGATTTGTCCTTTTGCTAGGATTAATGAAGAACATACTATTTGTACTTGTGAATT</gDNA_template>
            <first_frame> N  K  I  H  G  I  *  I  V  S  Q  V  L  D  Q  L  K  I  K  I  *  I  I  N  *  Y  *  L  L  V  H  S  Y  L  F  F  H  L  L  F  H  V  Y  M  S  V  L  D  F  A  F  G  *  *  L  S  M  T  I  N  E  Y  C  A  I  F  G  G  S  I  C  E  C  P  *  R  Y  *  G  Y  N  Q  L  V  Y  M  D  Y  F  I  L  V  P  L  *  F  F  S  K  I  M  D  L  S  F  C  *  D  *  *  R  T  Y  Y  L  Y  L  *  I </first_frame>
            <second_frame>  I  R  S  M  E  F  E  L  *  V  R  Y  W  T  S  *  K  L  K  F  E  *  L  I  S  I  D  Y  *  S  I  L  I  Y  F  F  I  F  F  F  M  Y  I  C  L  S  *  T  L  H  L  A  N  N  *  A  *  Q  *  M  N  I  V  R  Y  L  V  D  L  Y  V  N  V  H  S  V  T  E  A  I  T  S  L  F  I  W  T  I  L  F  *  F  H  F  D  F  S  L  K  *  W  I  C  P  F  A  R  I  N  E  E  H  T  I  C  T  C  E   </second_frame>
            <third_frame>   *  D  P  W  N  L  N  C  K  S  G  T  G  P  A  E  N  *  N  L  N  N  *  L  V  L  I  I  S  P  F  L  F  I  F  S  S  S  F  S  C  I  Y  V  C  P  R  L  C  I  W  L  I  I  K  H  D  N  K  *  I  L  C  D  I  W  W  I  Y  M  *  M  S  I  A  L  L  R  L  *  P  A  C  L  Y  G  L  F  Y  F  S  S  T  L  I  F  L  *  N  N  G  F  V  L  L  L  G  L  M  K  N  I  L  F  V  L  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0060J03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36216" PGL_stop="41267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36216" e_stop="36794"/>
            <exon e_start="36949" e_stop="37063"/>
            <exon e_start="39256" e_stop="39329"/>
            <exon e_start="39473" e_stop="39592"/>
            <exon e_start="39738" e_stop="39792"/>
            <exon e_start="41219" e_stop="41267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.714" e_score="1.000"/>
          <exon-intron don_prob="0.018" acc_prob="0.979" e_score="0.983"/>
          <exon-intron don_prob="0.982" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36216" e_stop="36794" e_length="579"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36795" i_stop="36948" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36949" e_stop="37063" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="37064" i_stop="39255" i_length="2192"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39256" e_stop="39329" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.714">
            <gDNA_intron_boundary i_start="39330" i_stop="39472" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="39473" e_stop="39592" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.018" acc_prob="0.979">
            <gDNA_intron_boundary i_start="39593" i_stop="39737" i_length="145"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39738" e_stop="39792" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.905">
            <gDNA_intron_boundary i_start="39793" i_stop="41218" i_length="1426"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="41219" e_stop="41267" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36216" stop="36794"/>
              <exon start="36949" stop="37063"/>
              <exon start="39256" stop="39329"/>
              <exon start="39473" stop="39592"/>
              <exon start="39738" stop="39792"/>
              <exon start="41219" stop="41267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36390" stop="36636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATCCCACAAAGAGGATAAGCTCATGAAGAAATGTGGAGCCACTGTTTGTAAGAATGGGATGTATACTTTTTTCTTCTTTTCCCATATGCCATCTTCGTAAGCACTAATAAATCCCCGCACCCAATTTTGTAACTAGAAAAACGGAATCTTCTCATTCTCTCTCCTCCATCTTTTCCCCTAAAAAAAATTTGTCCCCTTTCTCGTATTTACCCATCAAATCAACTCTAAATCCATTCCTTCTGTTCATCATGAAAAATTTTCTCTAAATTATGGAAACTACTTTCTTATGCTACTCTACTGTTACTTGCAACTTTTCCCCCCTGTAAATCCATTACAAAGAGGAGGAGATTTTGTGAATTCTGTAATTTTGTATTTGTGAATGGCGATGGACGACAACGAGAGTTGCGGGAGCAGAGCGATGGAGCCCTTGTCGCCCAAGCAAAATCGGCTACAGAGGCAGAAGAATGAAGTGTTTAACCAAGTGCTTAGTAGACTACAGGATTTGAATCTCCAAGAGGTTAAACTCCCTGGCTTTGAAGACCAGCTTTGGCTTCACTTTAATCGCCTCCCTGTTCG : TTATGCATCGGATGTAAATGTGGAAAGAGCAGAAGATGTGCTCATGCACAAGAGGTTGCTGGACATAGCGGAGGATCCTGAGAATAGACCTGCCTTTGATGTCCGCCTTGTGCAG : GTTCAGCCTATGTACACTGGAACGTCAACCAATACTGTTGATGTAGATCCTTCAGTTAATGAAGAAATCCCAAG : CATTCATCCTCCTCCAACTTTTGGTTCATCACCAAATCTTCAAGGCCTTGAAATTCATGATGATAAAGCTCATGTGAATCATGGAGATAGTGATATCAATTCAACTTCGCGGACAACCAG : GCCAATGCACGAGATTACTTTTTCAACTATTGACAAGCCAAAAACGCTCACTCAG : TTGACCAATATAATATCTGAGATTGGTCTGAACATTGAAGAGGCCCATG</gDNA_template>
            <first_frame> L  I  P  Q  R  G  *  A  H  E  E  M  W  S  H  C  L  *  E  W  D  V  Y  F  F  L  L  F  P  Y  A  I  F  V  S  T  N  K  S  P  H  P  I  L  *  L  E  K  R  N  L  L  I  L  S  P  P  S  F  P  L  K  K  I  C  P  L  S  R  I  Y  P  S  N  Q  L  *  I  H  S  F  C  S  S  *  K  I  F  S  K  L  W  K  L  L  S  Y  A  T  L  L  L  L  A  T  F  P  P  C  K  S  I  T  K  R  R  R  F  C  E  F  C  N  F  V  F  V  N  G  D  G  R  Q  R  E  L  R  E  Q  S  D  G  A  L  V  A  Q  A  K  S  A  T  E  A  E  E  *  S  V  *  P  S  A  *  *  T  T  G  F  E  S  P  R  G  *  T  P  W  L  *  R  P  A  L  A  S  L  *  S  P  P  C  S  :  L  C  I  G  C  K  C  G  K  S  R  R  C  A  H  A  Q  E  V  A  G  H  S  G  G  S  *  E  *  T  C  L  *  C  P  P  C  A   : G  S  A  Y  V  H  W  N  V  N  Q  Y  C  *  C  R  S  F  S  *  *  R  N  P  K  :  H  S  S  S  S  N  F  W  F  I  T  K  S  S  R  P  *  N  S  *  *  *  S  S  C  E  S  W  R  *  *  Y  Q  F  N  F  A  D  N  Q  :  A  N  A  R  D  Y  F  F  N  Y  *  Q  A  K  N  A  H  S   : V  D  Q  Y  N  I  *  D  W  S  E  H  *  R  G  P   </first_frame>
            <second_frame>  *  S  H  K  E  D  K  L  M  K  K  C  G  A  T  V  C  K  N  G  M  Y  T  F  F  F  F  S  H  M  P  S  S  *  A  L  I  N  P  R  T  Q  F  C  N  *  K  N  G  I  F  S  F  S  L  L  H  L  F  P  *  K  K  F  V  P  F  L  V  F  T  H  Q  I  N  S  K  S  I  P  S  V  H  H  E  K  F  S  L  N  Y  G  N  Y  F  L  M  L  L  Y  C  Y  L  Q  L  F  P  P  V  N  P  L  Q  R  G  G  D  F  V  N  S  V  I  L  Y  L  *  M  A  M  D  D  N  E  S  C  G  S  R  A  M  E  P  L  S  P  K  Q  N  R  L  Q  R  Q  K  N  E  V  F  N  Q  V  L  S  R  L  Q  D  L  N  L  Q  E  V  K  L  P  G  F  E  D  Q  L  W  L  H  F  N  R  L  P  V  R :   Y  A  S  D  V  N  V  E  R  A  E  D  V  L  M  H  K  R  L  L  D  I  A  E  D  P  E  N  R  P  A  F  D  V  R  L  V  Q  :  V  Q  P  M  Y  T  G  T  S  T  N  T  V  D  V  D  P  S  V  N  E  E  I  P  S :   I  H  P  P  P  T  F  G  S  S  P  N  L  Q  G  L  E  I  H  D  D  K  A  H  V  N  H  G  D  S  D  I  N  S  T  S  R  T  T  R :   P  M  H  E  I  T  F  S  T  I  D  K  P  K  T  L  T  Q  :  L  T  N  I  I  S  E  I  G  L  N  I  E  E  A  H  </second_frame>
            <third_frame>   D  P  T  K  R  I  S  S  *  R  N  V  E  P  L  F  V  R  M  G  C  I  L  F  S  S  F  P  I  C  H  L  R  K  H  *  *  I  P  A  P  N  F  V  T  R  K  T  E  S  S  H  S  L  S  S  I  F  S  P  K  K  N  L  S  P  F  S  Y  L  P  I  K  S  T  L  N  P  F  L  L  F  I  M  K  N  F  L  *  I  M  E  T  T  F  L  C  Y  S  T  V  T  C  N  F  S  P  L  *  I  H  Y  K  E  E  E  I  L  *  I  L  *  F  C  I  C  E  W  R  W  T  T  T  R  V  A  G  A  E  R  W  S  P  C  R  P  S  K  I  G  Y  R  G  R  R  M  K  C  L  T  K  C  L  V  D  Y  R  I  *  I  S  K  R  L  N  S  L  A  L  K  T  S  F  G  F  T  L  I  A  S  L  F   : V  M  H  R  M  *  M  W  K  E  Q  K  M  C  S  C  T  R  G  C  W  T  *  R  R  I  L  R  I  D  L  P  L  M  S  A  L  C  R :   F  S  L  C  T  L  E  R  Q  P  I  L  L  M  *  I  L  Q  L  M  K  K  S  Q   : A  F  I  L  L  Q  L  L  V  H  H  Q  I  F  K  A  L  K  F  M  M  I  K  L  M  *  I  M  E  I  V  I  S  I  Q  L  R  G  Q  P   : G  Q  C  T  R  L  L  F  Q  L  L  T  S  Q  K  R  S  L  S :   *  P  I  *  Y  L  R  L  V  *  T  L  K  R  P  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36598" stop="36794"/>
                    <exon start="36949" stop="37063"/>
                    <exon start="39256" stop="39329"/>
                    <exon start="39473" stop="39592"/>
                    <exon start="39738" stop="39792"/>
                    <exon start="41219" stop="41266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAMDDNESCGSRAMEPLSPKQNRLQRQKNEVFNQVLSRLQDLNLQEVKLPGFEDQLWLHFNRLPVRYASDVNVERAEDVLMHKRLLDIAEDPENRPAFDVRLVQVQPMYTGTSTNTVDVDPSVNEEIPSIHPPPTFGSSPNLQGLEIHDDKAHVNHGDSDINSTSRTTRPMHEITFSTIDKPKTLTQLTNIISEIGLNIEEAH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36400" stop="36597"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKFVPFLVFTHQINSKSIPSVHHEKFSLNYGNYFLMLLYCYLQLFPPVNPLQRGGDFVNSVILYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="41269" PGL_stop="46983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41269" e_stop="41329"/>
            <exon e_start="42003" e_stop="42053"/>
            <exon e_start="43308" e_stop="43468"/>
            <exon e_start="43545" e_stop="43652"/>
            <exon e_start="44160" e_stop="44233"/>
            <exon e_start="44512" e_stop="44687"/>
            <exon e_start="45370" e_stop="45465"/>
            <exon e_start="46126" e_stop="46206"/>
            <exon e_start="46291" e_stop="46344"/>
            <exon e_start="46436" e_stop="46570"/>
            <exon e_start="46653" e_stop="46983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.983" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.235" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.209" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.783" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.839" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="41269" e_stop="41329" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41330" i_stop="42002" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42003" e_stop="42053" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.929">
            <gDNA_intron_boundary i_start="42054" i_stop="43307" i_length="1254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43308" e_stop="43468" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.235" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43469" i_stop="43544" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43545" e_stop="43652" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.209" acc_prob="0.954">
            <gDNA_intron_boundary i_start="43653" i_stop="44159" i_length="507"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44160" e_stop="44233" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.737">
            <gDNA_intron_boundary i_start="44234" i_stop="44511" i_length="278"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44512" e_stop="44687" e_length="176"/>
          </exon>
          <intron i_serial="6" don_prob="0.957" acc_prob="0.985">
            <gDNA_intron_boundary i_start="44688" i_stop="45369" i_length="682"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45370" e_stop="45465" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.930" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45466" i_stop="46125" i_length="660"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46126" e_stop="46206" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.783" acc_prob="0.986">
            <gDNA_intron_boundary i_start="46207" i_stop="46290" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="46291" e_stop="46344" e_length="54"/>
          </exon>
          <intron i_serial="9" don_prob="0.839" acc_prob="0.965">
            <gDNA_intron_boundary i_start="46345" i_stop="46435" i_length="91"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="46436" e_stop="46570" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46571" i_stop="46652" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="46653" e_stop="46983" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41269" stop="41329"/>
              <exon start="42003" stop="42053"/>
              <exon start="43308" stop="43468"/>
              <exon start="43545" stop="43652"/>
              <exon start="44160" stop="44233"/>
              <exon start="44512" stop="44687"/>
              <exon start="45370" stop="45465"/>
              <exon start="46126" stop="46206"/>
              <exon start="46291" stop="46344"/>
              <exon start="46436" stop="46570"/>
              <exon start="46653" stop="46983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCAACTACTGATGGTTTCTCCTTGGATGTCTTTGTGGTTGATGGATGGCCGTATGAG : GAGACGGAGTTGCTTAAGAGTGAGGTGCAAAAGGAAGTTATGAGGAGCAAG : GAGCAGCCACAAGTCCTGCCTCCAATCAGTGAACCAGGTCAAACATCTGAATCAGGCTCCGATAGTGTAAAAATACCTACTGATGGATCTGATGACTGGGAAATTGATATCCGCCTGCTGAAATTTGAAAATAAAGTAGCATCTGGGTCATTTGGAGATCT : GTATAAAGGTACATACTGTAGCCAGGAAGTGGCTATAAAAGTTCTCAAGCCTGAAAATTTGAATATGGATATGGTAAAAGAGTTCTCTCAAGAGGTCTTTATCATGAG : GAAAATTCGGCACAAAAATGTTGTTCAATTTATAGGGGCATGCACACGACCTCCCAACCTGTGCATCGTGACAG : AGTTCATGACCAGAGGAAGCATCTATACTTTTTTGCACAAGCAAAGAGGTGCTTTTAAGCTTCCTACTCTCCTGAAGGTTGCAATTGATGTTTCTAAGGGAATGAGTTATCTGCACCAAAATAACATAATTCATCGTGATCTGAAGACTGCCAATCTTCTGATGGATGAACATGGA : GTTGTTAAGGTTGGTGACTTTGGGGTTGCTAGAGTGCAGACTCAAACTGGGGTGATGACAGCTGAAACTGGAACGTATAGATGGATGGCTCCTGAG : GTGATTGAACACAAACCGTATGACCACAAGGCTGATGTTTTCAGCTTTGGTATAGTGCTGTGGGAACTTCTGACTGGAGAA : ATTCCATATGCATACTTAACACCATTACAAGCAGCAATAGGTGTGGTGCAACAG : GGTCTACGGCCAACAATTCCTAAGAGCACTCATCCAAAGCTTGCTGAACTTCTTGAAAAATGCTGGCAGCAAGACCCAACACAGAGACCAGATTTCTCGGAGATTTTGGATATTCTGAAGCAACTAACAAAGGAG : GTTGGAGATGATGGAGAGGACAGACACAAGGACAAATCAATCGGTGGCTTTTTCTCGTCTCTTAGAAAGGGCAATCACTGAGAATTTACTAAAAGAGAGGAGGTTGATCGGCCTTCAGCTTTTGTCTCGGTGTACAGATTCTCTGATATCCAAACTTGATCTGATTAGTTTTTGAAAATCATGGTTTTTATCTAATGTCGCTTGGCATTCATTTACTATTCCTAATTTAGTCAGGGGTGCAAGCTGGTGAGTAAAGCTTTGGCAACTCTCTACAGAATAACTGTGAATTTGCGCAAGTTCTAATTCCTAACCCTTTTTTGTACCTTTCTTA</gDNA_template>
            <first_frame> F  F  N  Y  *  W  F  L  L  G  C  L  C  G  *  W  M  A  V  *   : G  D  G  V  A  *  E  *  G  A  K  G  S  Y  E  E  Q   : G  A  A  T  S  P  A  S  N  Q  *  T  R  S  N  I  *  I  R  L  R  *  C  K  N  T  Y  *  W  I  *  *  L  G  N  *  Y  P  P  A  E  I  *  K  *  S  S  I  W  V  I  W  R  S  :  V  *  R  Y  I  L  *  P  G  S  G  Y  K  S  S  Q  A  *  K  F  E  Y  G  Y  G  K  R  V  L  S  R  G  L  Y  H  E  :  E  N  S  A  Q  K  C  C  S  I  Y  R  G  M  H  T  T  S  Q  P  V  H  R  D  R :   V  H  D  Q  R  K  H  L  Y  F  F  A  Q  A  K  R  C  F  *  A  S  Y  S  P  E  G  C  N  *  C  F  *  G  N  E  L  S  A  P  K  *  H  N  S  S  *  S  E  D  C  Q  S  S  D  G  *  T  W   : S  C  *  G  W  *  L  W  G  C  *  S  A  D  S  N  W  G  D  D  S  *  N  W  N  V  *  M  D  G  S  *   : G  D  *  T  Q  T  V  *  P  Q  G  *  C  F  Q  L  W  Y  S  A  V  G  T  S  D  W  R   : N  S  I  C  I  L  N  T  I  T  S  S  N  R  C  G  A  T   : G  S  T  A  N  N  S  *  E  H  S  S  K  A  C  *  T  S  *  K  M  L  A  A  R  P  N  T  E  T  R  F  L  G  D  F  G  Y  S  E  A  T  N  K  G   : G  W  R  *  W  R  G  Q  T  Q  G  Q  I  N  R  W  L  F  L  V  S  *  K  G  Q  S  L  R  I  Y  *  K  R  G  G  *  S  A  F  S  F  C  L  G  V  Q  I  L  *  Y  P  N  L  I  *  L  V  F  E  N  H  G  F  Y  L  M  S  L  G  I  H  L  L  F  L  I  *  S  G  V  Q  A  G  E  *  S  F  G  N  S  L  Q  N  N  C  E  F  A  Q  V  L  I  P  N  P  F  L  Y  L  S   </first_frame>
            <second_frame>  F  S  T  T  D  G  F  S  L  D  V  F  V  V  D  G  W  P  Y  E  :  E  T  E  L  L  K  S  E  V  Q  K  E  V  M  R  S  K  :  E  Q  P  Q  V  L  P  P  I  S  E  P  G  Q  T  S  E  S  G  S  D  S  V  K  I  P  T  D  G  S  D  D  W  E  I  D  I  R  L  L  K  F  E  N  K  V  A  S  G  S  F  G  D  L :   Y  K  G  T  Y  C  S  Q  E  V  A  I  K  V  L  K  P  E  N  L  N  M  D  M  V  K  E  F  S  Q  E  V  F  I  M  R :   K  I  R  H  K  N  V  V  Q  F  I  G  A  C  T  R  P  P  N  L  C  I  V  T   : E  F  M  T  R  G  S  I  Y  T  F  L  H  K  Q  R  G  A  F  K  L  P  T  L  L  K  V  A  I  D  V  S  K  G  M  S  Y  L  H  Q  N  N  I  I  H  R  D  L  K  T  A  N  L  L  M  D  E  H  G  :  V  V  K  V  G  D  F  G  V  A  R  V  Q  T  Q  T  G  V  M  T  A  E  T  G  T  Y  R  W  M  A  P  E  :  V  I  E  H  K  P  Y  D  H  K  A  D  V  F  S  F  G  I  V  L  W  E  L  L  T  G  E  :  I  P  Y  A  Y  L  T  P  L  Q  A  A  I  G  V  V  Q  Q  :  G  L  R  P  T  I  P  K  S  T  H  P  K  L  A  E  L  L  E  K  C  W  Q  Q  D  P  T  Q  R  P  D  F  S  E  I  L  D  I  L  K  Q  L  T  K  E  :  V  G  D  D  G  E  D  R  H  K  D  K  S  I  G  G  F  F  S  S  L  R  K  G  N  H  *  E  F  T  K  R  E  E  V  D  R  P  S  A  F  V  S  V  Y  R  F  S  D  I  Q  T  *  S  D  *  F  L  K  I  M  V  F  I  *  C  R  L  A  F  I  Y  Y  S  *  F  S  Q  G  C  K  L  V  S  K  A  L  A  T  L  Y  R  I  T  V  N  L  R  K  F  *  F  L  T  L  F  C  T  F  L  </second_frame>
            <third_frame>   F  Q  L  L  M  V  S  P  W  M  S  L  W  L  M  D  G  R  M  R :   R  R  S  C  L  R  V  R  C  K  R  K  L  *  G  A  R :   S  S  H  K  S  C  L  Q  S  V  N  Q  V  K  H  L  N  Q  A  P  I  V  *  K  Y  L  L  M  D  L  M  T  G  K  L  I  S  A  C  *  N  L  K  I  K  *  H  L  G  H  L  E  I   : C  I  K  V  H  T  V  A  R  K  W  L  *  K  F  S  S  L  K  I  *  I  W  I  W  *  K  S  S  L  K  R  S  L  S  *   : G  K  F  G  T  K  M  L  F  N  L  *  G  H  A  H  D  L  P  T  C  A  S  *  Q  :  S  S  *  P  E  E  A  S  I  L  F  C  T  S  K  E  V  L  L  S  F  L  L  S  *  R  L  Q  L  M  F  L  R  E  *  V  I  C  T  K  I  T  *  F  I  V  I  *  R  L  P  I  F  *  W  M  N  M  E :   L  L  R  L  V  T  L  G  L  L  E  C  R  L  K  L  G  *  *  Q  L  K  L  E  R  I  D  G  W  L  L  R :   *  L  N  T  N  R  M  T  T  R  L  M  F  S  A  L  V  *  C  C  G  N  F  *  L  E  K :   F  H  M  H  T  *  H  H  Y  K  Q  Q  *  V  W  C  N  R :   V  Y  G  Q  Q  F  L  R  A  L  I  Q  S  L  L  N  F  L  K  N  A  G  S  K  T  Q  H  R  D  Q  I  S  R  R  F  W  I  F  *  S  N  *  Q  R  R :   L  E  M  M  E  R  T  D  T  R  T  N  Q  S  V  A  F  S  R  L  L  E  R  A  I  T  E  N  L  L  K  E  R  R  L  I  G  L  Q  L  L  S  R  C  T  D  S  L  I  S  K  L  D  L  I  S  F  *  K  S  W  F  L  S  N  V  A  W  H  S  F  T  I  P  N  L  V  R  G  A  S  W  *  V  K  L  W  Q  L  S  T  E  *  L  *  I  C  A  S  S  N  S  *  P  F  F  V  P  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41270" stop="41329"/>
                    <exon start="42003" stop="42053"/>
                    <exon start="43308" stop="43468"/>
                    <exon start="43545" stop="43652"/>
                    <exon start="44160" stop="44233"/>
                    <exon start="44512" stop="44687"/>
                    <exon start="45370" stop="45465"/>
                    <exon start="46126" stop="46206"/>
                    <exon start="46291" stop="46344"/>
                    <exon start="46436" stop="46570"/>
                    <exon start="46653" stop="46733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSTTDGFSLDVFVVDGWPYEETELLKSEVQKEVMRSKEQPQVLPPISEPGQTSESGSDSVKIPTDGSDDWEIDIRLLKFENKVASGSFGDLYKGTYCSQEVAIKVLKPENLNMDMVKEFSQEVFIMRKIRHKNVVQFIGACTRPPNLCIVTEFMTRGSIYTFLHKQRGAFKLPTLLKVAIDVSKGMSYLHQNNIIHRDLKTANLLMDEHGVVKVGDFGVARVQTQTGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGEIPYAYLTPLQAAIGVVQQGLRPTIPKSTHPKLAELLEKCWQQDPTQRPDFSEILDILKQLTKEVGDDGEDRHKDKSIGGFFSSLRKGNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="52489" PGL_stop="49826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52489" e_stop="52308"/>
            <exon e_start="52203" e_stop="52102"/>
            <exon e_start="52015" e_stop="51905"/>
            <exon e_start="51765" e_stop="51692"/>
            <exon e_start="50577" e_stop="50507"/>
            <exon e_start="50399" e_stop="50346"/>
            <exon e_start="50168" e_stop="49826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.429" e_score="0.995"/>
          <exon-intron don_prob="0.764" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="52489" e_stop="52308" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.429">
            <gDNA_intron_boundary i_start="52307" i_stop="52204" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52203" e_stop="52102" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.764" acc_prob="0.993">
            <gDNA_intron_boundary i_start="52101" i_stop="52016" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52015" e_stop="51905" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="51904" i_stop="51766" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51765" e_stop="51692" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51691" i_stop="50578" i_length="1114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50577" e_stop="50507" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50506" i_stop="50400" i_length="107"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50399" e_stop="50346" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50345" i_stop="50169" i_length="177"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="50168" e_stop="49826" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52489" stop="52308"/>
              <exon start="52203" stop="52102"/>
              <exon start="52015" stop="51905"/>
              <exon start="51765" stop="51692"/>
              <exon start="50577" stop="50507"/>
              <exon start="50399" stop="50346"/>
              <exon start="50168" stop="49826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATACACTTGAAAAAAACCCTCCTGTCTTCACCCATAAATATCAATCTCCCTTTCATTTCTCACCATCAAACAAAATAATTGAACAACTTCCACAGGAACAAACAATCATGAGAACTATTTCCCTTCATTCAACCTCATTTTCACTTGTTGAGTTCCATGGTACCAAGAATTTGGCACAAAG : CAGGATCAATAGATCGGTTTCGTTGATTCCAATGGCGAGGTCTCAATTTCAGCCTAAAATAAGACGTGACATTGGTACTAGCAATAGAAATCCAAGTTTTAG : CTGGATGGCAACAGTTGGAGAGAAAGTGCACAACTCCACGGTTCCTACTTCTGTTCCTGTTCGAGTTGCACTTGAATTGCTTCAAGCTGGCCATCGTTATTTAGATGTCAG : AACTACTGAGGAGTACAATGATGGGCATGCTGCTGGAGCCATAAACATTCCTTACATGCTTAGAATTGGCTCAG : GGATGATAAAGAACCCCAATTTCTTGGAGGAAGTGTTGGAACAATTCGGGAAGGATGATGAGATTATAGTT : GGATGCCAGTTGGGTAAGAGATCATTTATGGCTGCAACTGAACTTCTTGCTGCT : GGATTTACTGGGGTGACTGACATTGCTGGTGGATATGCTGCGTGGACAGAGAGTGGACTTCCGATTGAGTCTTGAAGGCCTTTTATTTACTCACATATAAAAAGGGTAGATTTTTAAATAAGTACACACCAGTAGTCAACATGGCGAAATCAATTCCCTTTCTTCACATCAAAAATTAGAAGGAGCAACTTGCAAAATCTCTTGTACAGTAATTTATAGCAGGTGATGATGATATTCGATGTGGGAGAATCTGTATTGCAAGAAATATGTGTAAATATTGTTCTCCTAATTCTGCTATAATAAATAATATTTGCCTGAAAGGCCTCTCATCTGCTCATAACTT</gDNA_template>
            <first_frame> H  T  L  E  K  N  P  P  V  F  T  H  K  Y  Q  S  P  F  H  F  S  P  S  N  K  I  I  E  Q  L  P  Q  E  Q  T  I  M  R  T  I  S  L  H  S  T  S  F  S  L  V  E  F  H  G  T  K  N  L  A  Q  S :   R  I  N  R  S  V  S  L  I  P  M  A  R  S  Q  F  Q  P  K  I  R  R  D  I  G  T  S  N  R  N  P  S  F  S :   W  M  A  T  V  G  E  K  V  H  N  S  T  V  P  T  S  V  P  V  R  V  A  L  E  L  L  Q  A  G  H  R  Y  L  D  V  R :   T  T  E  E  Y  N  D  G  H  A  A  G  A  I  N  I  P  Y  M  L  R  I  G  S   : G  M  I  K  N  P  N  F  L  E  E  V  L  E  Q  F  G  K  D  D  E  I  I  V  :  G  C  Q  L  G  K  R  S  F  M  A  A  T  E  L  L  A  A  :  G  F  T  G  V  T  D  I  A  G  G  Y  A  A  W  T  E  S  G  L  P  I  E  S  *  R  P  F  I  Y  S  H  I  K  R  V  D  F  *  I  S  T  H  Q  *  S  T  W  R  N  Q  F  P  F  F  T  S  K  I  R  R  S  N  L  Q  N  L  L  Y  S  N  L  *  Q  V  M  M  I  F  D  V  G  E  S  V  L  Q  E  I  C  V  N  I  V  L  L  I  L  L  *  *  I  I  F  A  *  K  A  S  H  L  L  I  T  </first_frame>
            <second_frame>  I  H  L  K  K  T  L  L  S  S  P  I  N  I  N  L  P  F  I  S  H  H  Q  T  K  *  L  N  N  F  H  R  N  K  Q  S  *  E  L  F  P  F  I  Q  P  H  F  H  L  L  S  S  M  V  P  R  I  W  H  K   : A  G  S  I  D  R  F  R  *  F  Q  W  R  G  L  N  F  S  L  K  *  D  V  T  L  V  L  A  I  E  I  Q  V  L   : A  G  W  Q  Q  L  E  R  K  C  T  T  P  R  F  L  L  L  F  L  F  E  L  H  L  N  C  F  K  L  A  I  V  I  *  M  S   : E  L  L  R  S  T  M  M  G  M  L  L  E  P  *  T  F  L  T  C  L  E  L  A  Q  :  G  *  *  R  T  P  I  S  W  R  K  C  W  N  N  S  G  R  M  M  R  L  *  L :   D  A  S  W  V  R  D  H  L  W  L  Q  L  N  F  L  L  L :   D  L  L  G  *  L  T  L  L  V  D  M  L  R  G  Q  R  V  D  F  R  L  S  L  E  G  L  L  F  T  H  I  *  K  G  *  I  F  K  *  V  H  T  S  S  Q  H  G  E  I  N  S  L  S  S  H  Q  K  L  E  G  A  T  C  K  I  S  C  T  V  I  Y  S  R  *  *  *  Y  S  M  W  E  N  L  Y  C  K  K  Y  V  *  I  L  F  S  *  F  C  Y  N  K  *  Y  L  P  E  R  P  L  I  C  S  *  L </second_frame>
            <third_frame>   Y  T  *  K  K  P  S  C  L  H  P  *  I  S  I  S  L  S  F  L  T  I  K  Q  N  N  *  T  T  S  T  G  T  N  N  H  E  N  Y  F  P  S  F  N  L  I  F  T  C  *  V  P  W  Y  Q  E  F  G  T  K  :  Q  D  Q  *  I  G  F  V  D  S  N  G  E  V  S  I  S  A  *  N  K  T  *  H  W  Y  *  Q  *  K  S  K  F  *  :  L  D  G  N  S  W  R  E  S  A  Q  L  H  G  S  Y  F  C  S  C  S  S  C  T  *  I  A  S  S  W  P  S  L  F  R  C  Q  :  N  Y  *  G  V  Q  *  W  A  C  C  W  S  H  K  H  S  L  H  A  *  N  W  L  R :   D  D  K  E  P  Q  F  L  G  G  S  V  G  T  I  R  E  G  *  *  D  Y  S   : W  M  P  V  G  *  E  I  I  Y  G  C  N  *  T  S  C  C   : W  I  Y  W  G  D  *  H  C  W  W  I  C  C  V  D  R  E  W  T  S  D  *  V  L  K  A  F  Y  L  L  T  Y  K  K  G  R  F  L  N  K  Y  T  P  V  V  N  M  A  K  S  I  P  F  L  H  I  K  N  *  K  E  Q  L  A  K  S  L  V  Q  *  F  I  A  G  D  D  D  I  R  C  G  R  I  C  I  A  R  N  M  C  K  Y  C  S  P  N  S  A  I  I  N  N  I  C  L  K  G  L  S  S  A  H  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52489" stop="52308"/>
                    <exon start="52203" stop="52102"/>
                    <exon start="52015" stop="51905"/>
                    <exon start="51765" stop="51692"/>
                    <exon start="50577" stop="50507"/>
                    <exon start="50399" stop="50346"/>
                    <exon start="50168" stop="50094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTLEKNPPVFTHKYQSPFHFSPSNKIIEQLPQEQTIMRTISLHSTSFSLVEFHGTKNLAQSRINRSVSLIPMARSQFQPKIRRDIGTSNRNPSFSWMATVGEKVHNSTVPTSVPVRVALELLQAGHRYLDVRTTEEYNDGHAAGAINIPYMLRIGSGMIKNPNFLEEVLEQFGKDDEIIVGCQLGKRSFMAATELLAAGFTGVTDIAGGYAAWTESGLPIES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="58072" PGL_stop="62801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58072" e_stop="58368"/>
            <exon e_start="58453" e_stop="58732"/>
            <exon e_start="60559" e_stop="60815"/>
            <exon e_start="60898" e_stop="61010"/>
            <exon e_start="61402" e_stop="61549"/>
            <exon e_start="62251" e_stop="62388"/>
            <exon e_start="62519" e_stop="62801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="0.978" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="58072" e_stop="58368" e_length="297"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58369" i_stop="58452" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58453" e_stop="58732" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.949">
            <gDNA_intron_boundary i_start="58733" i_stop="60558" i_length="1826"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60559" e_stop="60815" e_length="257"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60816" i_stop="60897" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60898" e_stop="61010" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.986">
            <gDNA_intron_boundary i_start="61011" i_stop="61401" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61402" e_stop="61549" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.720">
            <gDNA_intron_boundary i_start="61550" i_stop="62250" i_length="701"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62251" e_stop="62388" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.874">
            <gDNA_intron_boundary i_start="62389" i_stop="62518" i_length="130"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="62519" e_stop="62801" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58072" stop="58368"/>
              <exon start="58453" stop="58732"/>
              <exon start="60559" stop="60815"/>
              <exon start="60898" stop="61010"/>
              <exon start="61402" stop="61549"/>
              <exon start="62251" stop="62388"/>
              <exon start="62519" stop="62801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCAAAGGCTTACTAAACAGTTTAGCAAAGGATGTTTTGTGTAAAATAAGCCAGAGCCCAAAATTTGTTCCGGTCCAAATCCCCGTATTCAGTAACGAGCAACATTTTCTGCACTTCAACCAACGACCAACAACCACCGCAGAGCTAGTCAAACCACCACTACTCACGGCCGGTGGTATCCAATTCTGAGCTGATGGCCAGTATCATCGGCGTATCATCTTCTCCTTTTCCAACCCAGACCTCTCATCTTCTTCCATCTCGCTCTAATTCCATATCTTCTCTCGTTCAACTCAAG : AGAGATTCGGTTCGGCGACTGTTGTTGCTTCGAGTGAACTGCTCATCAAGGCAGGTCGGAGATGCAGAGACAGAATCAGAATCTAAGGTGGTATTGCCAGATACTCCTGCTGATACAGGCATTTCAGCATACAATTGGTGTGCAGCTCTTGGTGGGATTGGGTTTCTTGAGACTTCTTACTTGACGTTCCTCAAGTTAACTAACTCTGCAGCATTTTGTCCTGTTGGTGATGGTGCCAGCTGTGGCGACATCCTCAACAGCAGCTACTCAGCTGTATTTG : GTGTTCCTCTTCCATTAATTGGTATGGTTGCTTATGGAGTAGTTGCAATACTTGGGATACAATTGGGCCAGAAAAGCAGGCCTCTTGGAACTGGTGAAGCTAATGGGCGTTTGGTTTTACTTGGAACAACTACTTCCATGGCAGCTGCCAGTGCATACTTCTTGTACATCCTAAGCACAAAGTTCACTGGGGAATTTTGTCCGTACTGTTTAGCTTCTGTCTTATTGTCATTTAGTTTGTTCATCAGCAGTATGAAG : GGTTTGGGCTTTCAAGAGGTGCAAAAAGATGTGGGTATACAGTTACTTATAGTTCTCTTGGTGGTTTCTACCCTAAACAATTCATACAGTGACTCTCAGCCTACAAACACAGG : TTCTGCTCTGGCTGAGATGGAATACTTTACAGCAGAGATCACATCAGAGTCTACACCTTTTGCTATATCCCTAGCGAAACACCTGCATTCAATTGGGGCAAAAATGTATGGGGCTTTCTGGTGTTCTCACTGCCAGGAACAAAAGCAG : ATGTTTGGACGAGAAGCAGCAAAGTTACTAGACTATGTAGAATGCTTTCCTTATGGACTTAAGAGGGGAATTTCTATGATCAATGCATGTCAAGAAGCAAAACTCGAAGGGTTCCCTACATGGGTTATCAATGGGGAG : GTTCTTAGCGGAGAGAAGAAGCTTTCAGAGCTGGCTGCACTGTCTGGTTTCGATATGAAAGAAGAACTTACTGAGGCTAAATGAGCTCTGTTGATCAACAGTCACATACTCTTAGGATATCTAAGTTTATGAATTCTTATAACTGCCCTCTGGTATTTACTTAGTTTCATAATGTAATTACCTTCTTATGTTAGTAAAACTGAATAGGTAGTATGATAAAGTGAAGGATCCGAGTGGATCATCTTCTGAGTAAATATATCAAGCAAATCCTATTACCCACAAT</gDNA_template>
            <first_frame> C  S  K  A  Y  *  T  V  *  Q  R  M  F  C  V  K  *  A  R  A  Q  N  L  F  R  S  K  S  P  Y  S  V  T  S  N  I  F  C  T  S  T  N  D  Q  Q  P  P  Q  S  *  S  N  H  H  Y  S  R  P  V  V  S  N  S  E  L  M  A  S  I  I  G  V  S  S  S  P  F  P  T  Q  T  S  H  L  L  P  S  R  S  N  S  I  S  S  L  V  Q  L  K  :  R  D  S  V  R  R  L  L  L  L  R  V  N  C  S  S  R  Q  V  G  D  A  E  T  E  S  E  S  K  V  V  L  P  D  T  P  A  D  T  G  I  S  A  Y  N  W  C  A  A  L  G  G  I  G  F  L  E  T  S  Y  L  T  F  L  K  L  T  N  S  A  A  F  C  P  V  G  D  G  A  S  C  G  D  I  L  N  S  S  Y  S  A  V  F   : G  V  P  L  P  L  I  G  M  V  A  Y  G  V  V  A  I  L  G  I  Q  L  G  Q  K  S  R  P  L  G  T  G  E  A  N  G  R  L  V  L  L  G  T  T  T  S  M  A  A  A  S  A  Y  F  L  Y  I  L  S  T  K  F  T  G  E  F  C  P  Y  C  L  A  S  V  L  L  S  F  S  L  F  I  S  S  M  K  :  G  L  G  F  Q  E  V  Q  K  D  V  G  I  Q  L  L  I  V  L  L  V  V  S  T  L  N  N  S  Y  S  D  S  Q  P  T  N  T  G :   S  A  L  A  E  M  E  Y  F  T  A  E  I  T  S  E  S  T  P  F  A  I  S  L  A  K  H  L  H  S  I  G  A  K  M  Y  G  A  F  W  C  S  H  C  Q  E  Q  K  Q  :  M  F  G  R  E  A  A  K  L  L  D  Y  V  E  C  F  P  Y  G  L  K  R  G  I  S  M  I  N  A  C  Q  E  A  K  L  E  G  F  P  T  W  V  I  N  G  E  :  V  L  S  G  E  K  K  L  S  E  L  A  A  L  S  G  F  D  M  K  E  E  L  T  E  A  K  *  A  L  L  I  N  S  H  I  L  L  G  Y  L  S  L  *  I  L  I  T  A  L  W  Y  L  L  S  F  I  M  *  L  P  S  Y  V  S  K  T  E  *  V  V  *  *  S  E  G  S  E  W  I  I  F  *  V  N  I  S  S  K  S  Y  Y  P  Q  </first_frame>
            <second_frame>  V  Q  R  L  T  K  Q  F  S  K  G  C  F  V  *  N  K  P  E  P  K  I  C  S  G  P  N  P  R  I  Q  *  R  A  T  F  S  A  L  Q  P  T  T  N  N  H  R  R  A  S  Q  T  T  T  T  H  G  R  W  Y  P  I  L  S  *  W  P  V  S  S  A  Y  H  L  L  L  F  Q  P  R  P  L  I  F  F  H  L  A  L  I  P  Y  L  L  S  F  N  S  R :   E  I  R  F  G  D  C  C  C  F  E  *  T  A  H  Q  G  R  S  E  M  Q  R  Q  N  Q  N  L  R  W  Y  C  Q  I  L  L  L  I  Q  A  F  Q  H  T  I  G  V  Q  L  L  V  G  L  G  F  L  R  L  L  T  *  R  S  S  S  *  L  T  L  Q  H  F  V  L  L  V  M  V  P  A  V  A  T  S  S  T  A  A  T  Q  L  Y  L  :  V  F  L  F  H  *  L  V  W  L  L  M  E  *  L  Q  Y  L  G  Y  N  W  A  R  K  A  G  L  L  E  L  V  K  L  M  G  V  W  F  Y  L  E  Q  L  L  P  W  Q  L  P  V  H  T  S  C  T  S  *  A  Q  S  S  L  G  N  F  V  R  T  V  *  L  L  S  Y  C  H  L  V  C  S  S  A  V  *  R :   V  W  A  F  K  R  C  K  K  M  W  V  Y  S  Y  L  *  F  S  W  W  F  L  P  *  T  I  H  T  V  T  L  S  L  Q  T  Q   : V  L  L  W  L  R  W  N  T  L  Q  Q  R  S  H  Q  S  L  H  L  L  L  Y  P  *  R  N  T  C  I  Q  L  G  Q  K  C  M  G  L  S  G  V  L  T  A  R  N  K  S  R :   C  L  D  E  K  Q  Q  S  Y  *  T  M  *  N  A  F  L  M  D  L  R  G  E  F  L  *  S  M  H  V  K  K  Q  N  S  K  G  S  L  H  G  L  S  M  G  R :   F  L  A  E  R  R  S  F  Q  S  W  L  H  C  L  V  S  I  *  K  K  N  L  L  R  L  N  E  L  C  *  S  T  V  T  Y  S  *  D  I  *  V  Y  E  F  L  *  L  P  S  G  I  Y  L  V  S  *  C  N  Y  L  L  M  L  V  K  L  N  R  *  Y  D  K  V  K  D  P  S  G  S  S  S  E  *  I  Y  Q  A  N  P  I  T  H  N </second_frame>
            <third_frame>   F  K  G  L  L  N  S  L  A  K  D  V  L  C  K  I  S  Q  S  P  K  F  V  P  V  Q  I  P  V  F  S  N  E  Q  H  F  L  H  F  N  Q  R  P  T  T  T  A  E  L  V  K  P  P  L  L  T  A  G  G  I  Q  F  *  A  D  G  Q  Y  H  R  R  I  I  F  S  F  S  N  P  D  L  S  S  S  S  I  S  L  *  F  H  I  F  S  R  S  T  Q   : E  R  F  G  S  A  T  V  V  A  S  S  E  L  L  I  K  A  G  R  R  C  R  D  R  I  R  I  *  G  G  I  A  R  Y  S  C  *  Y  R  H  F  S  I  Q  L  V  C  S  S  W  W  D  W  V  S  *  D  F  L  L  D  V  P  Q  V  N  *  L  C  S  I  L  S  C  W  *  W  C  Q  L  W  R  H  P  Q  Q  Q  L  L  S  C  I  W :   C  S  S  S  I  N  W  Y  G  C  L  W  S  S  C  N  T  W  D  T  I  G  P  E  K  Q  A  S  W  N  W  *  S  *  W  A  F  G  F  T  W  N  N  Y  F  H  G  S  C  Q  C  I  L  L  V  H  P  K  H  K  V  H  W  G  I  L  S  V  L  F  S  F  C  L  I  V  I  *  F  V  H  Q  Q  Y  E   : G  F  G  L  S  R  G  A  K  R  C  G  Y  T  V  T  Y  S  S  L  G  G  F  Y  P  K  Q  F  I  Q  *  L  S  A  Y  K  H  R  :  F  C  S  G  *  D  G  I  L  Y  S  R  D  H  I  R  V  Y  T  F  C  Y  I  P  S  E  T  P  A  F  N  W  G  K  N  V  W  G  F  L  V  F  S  L  P  G  T  K  A   : D  V  W  T  R  S  S  K  V  T  R  L  C  R  M  L  S  L  W  T  *  E  G  N  F  Y  D  Q  C  M  S  R  S  K  T  R  R  V  P  Y  M  G  Y  Q  W  G   : G  S  *  R  R  E  E  A  F  R  A  G  C  T  V  W  F  R  Y  E  R  R  T  Y  *  G  *  M  S  S  V  D  Q  Q  S  H  T  L  R  I  S  K  F  M  N  S  Y  N  C  P  L  V  F  T  *  F  H  N  V  I  T  F  L  C  *  *  N  *  I  G  S  M  I  K  *  R  I  R  V  D  H  L  L  S  K  Y  I  K  Q  I  L  L  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58222" stop="58368"/>
                    <exon start="58453" stop="58732"/>
                    <exon start="60559" stop="60815"/>
                    <exon start="60898" stop="61010"/>
                    <exon start="61402" stop="61549"/>
                    <exon start="62251" stop="62388"/>
                    <exon start="62519" stop="62602"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNHHYSRPVVSNSELMASIIGVSSSPFPTQTSHLLPSRSNSISSLVQLKRDSVRRLLLLRVNCSSRQVGDAETESESKVVLPDTPADTGISAYNWCAALGGIGFLETSYLTFLKLTNSAAFCPVGDGASCGDILNSSYSAVFGVPLPLIGMVAYGVVAILGIQLGQKSRPLGTGEANGRLVLLGTTTSMAAASAYFLYILSTKFTGEFCPYCLASVLLSFSLFISSMKGLGFQEVQKDVGIQLLIVLLVVSTLNNSYSDSQPTNTGSALAEMEYFTAEITSESTPFAISLAKHLHSIGAKMYGAFWCSHCQEQKQMFGREAAKLLDYVECFPYGLKRGISMINACQEAKLEGFPTWVINGEVLSGEKKLSELAALSGFDMKEELTEAK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="63790" PGL_stop="66790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63790" e_stop="64099"/>
            <exon e_start="64625" e_stop="65078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63790" e_stop="64099" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64100" i_stop="64624" i_length="525"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="64625" e_stop="65078" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63790" stop="64099"/>
              <exon start="64625" stop="65078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAG : ATATGCTTAATGAAACTTACATTGAGTTCGTGCGGCAGATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATGGTAAAACTTTCAGTACCTTCTAATTACATTTAATATAGTTATATTGAGAACTTACTCCTAAATTTTTCTTTTTCAATGTATAGTTTATTTCCCTACTGCTATTTTCTCTGTTATTATCTCTTTCAAAATGGTTCCTGTCTCCTTAATCTACCTTACAATATTATTGGGGGTAATGTAAATGACTGTAAAGAGGGGGGCAGATGGAAGGGGAAGTATTTAGGGGAATCATGATT</gDNA_template>
            <first_frame> L  C  C  F  G  Y  *  A  I  S  S  *  M  M  V  T  V  N  L  K  S  L  L  I  F  S  A  F  L  R  V  F  L  I  I  Y  G  E  W  Q  D  T  H  M  E  V  R  Y  T  D  V  D  Y  L  V  F  S  D  A  A  A  L  V  A  A  G  K  S  P  Y  Q  R  S  T  Y  R  Y  S  P  L  I  A  F  L  L  V  P  N  S  F  V  H  P  S  W  G  K  F  I  F  S  A  S   : D  M  L  N  E  T  Y  I  E  F  V  R  Q  I  F  S  W  D  F  L  S  T  P  F  *  S  *  E  G  C  L  R  N  Y  A  P  I  R  *  W  Y  G  F  *  I  H  L  P  L  P  L  E  L  V  G  I  V  S  P  S  S  V  P  *  S  F  G  L  F  Y  V  *  *  M  V  K  L  S  V  P  S  N  Y  I  *  Y  S  Y  I  E  N  L  L  L  N  F  S  F  S  M  Y  S  L  F  P  Y  C  Y  F  L  C  Y  Y  L  F  Q  N  G  S  C  L  L  N  L  P  Y  N  I  I  G  G  N  V  N  D  C  K  E  G  G  R  W  K  G  K  Y  L  G  E  S  *   </first_frame>
            <second_frame>  S  V  V  L  G  I  E  R  S  V  P  E  *  W  *  L  *  I  *  S  R  C  *  Y  S  Q  P  F  L  G  C  F  *  *  S  M  E  N  G  K  I  P  I  W  R  F  D  T  Q  M  W  T  I  L  F  S  Q  M  Q  L  L  *  L  L  P  E  N  P  L  I  K  D  L  H  I  V  T  L  P  *  L  L  F  F  L  C  P  I  L  S  F  I  L  L  G  E  S  L  S  S  P  L  Q  :  I  C  L  M  K  L  T  L  S  S  C  G  R  S  S  R  G  I  S  Y  Q  R  H  S  K  A  K  R  G  A  *  E  I  M  H  L  F  G  D  G  M  A  F  E  S  I  Y  L  Y  H  W  N  S  W  E  L  *  A  H  H  L  C  H  N  P  L  D  Y  S  M  S  N  E  W  *  N  F  Q  Y  L  L  I  T  F  N  I  V  I  L  R  T  Y  S  *  I  F  L  F  Q  C  I  V  Y  F  P  T  A  I  F  S  V  I  I  S  F  K  M  V  P  V  S  L  I  Y  L  T  I  L  L  G  V  M  *  M  T  V  K  R  G  A  D  G  R  G  S  I  *  G  N  H  D  </second_frame>
            <third_frame>   L  L  F  W  V  L  S  D  Q  F  L  N  D  G  D  C  K  S  E  V  A  A  D  I  L  S  L  S  *  G  V  F  D  N  L  W  R  M  A  R  Y  P  Y  G  G  S  I  H  R  C  G  L  S  C  F  L  R  C  S  C  F  S  C  C  R  K  I  P  L  S  K  I  Y  I  S  L  L  S  L  D  C  F  S  S  C  A  Q  F  F  R  S  S  F  L  G  K  V  Y  L  L  R  F  R :   Y  A  *  *  N  L  H  *  V  R  A  A  D  L  L  V  G  F  L  I  N  A  I  L  K  L  R  G  V  P  E  K  L  C  T  Y  S  V  M  V  W  L  L  N  P  F  T  F  T  I  G  T  R  G  N  C  E  P  I  I  C  A  I  I  L  W  I  I  L  C  L  M  N  G  K  T  F  S  T  F  *  L  H  L  I  *  L  Y  *  E  L  T  P  K  F  F  F  F  N  V  *  F  I  S  L  L  L  F  S  L  L  L  S  L  S  K  W  F  L  S  P  *  S  T  L  Q  Y  Y  W  G  *  C  K  *  L  *  R  G  G  Q  M  E  G  E  V  F  R  G  I  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63826" stop="64099"/>
                    <exon start="64625" stop="64698"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMVTVNLKSLLIFSAFLRVFLIIYGEWQDTHMEVRYTDVDYLVFSDAAALVAAGKSPYQRSTYRYSPLIAFLLVPNSFVHPSWGKFIFSASDMLNETYIEFVRQIFSWDFLSTPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64879" stop="65076"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSYIENLLLNFSFSMYSLFPYCYFLCYYLFQNGSCLLNLPYNIIGGNVNDCKEGGRWKGKYLGES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63854" e_stop="64579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="63854" e_stop="64579" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63854" stop="64579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAGGTGAGATTTTCCCTTTCTCTTCTCTTTTTCTTTTTTTCTTTCTTTGTCCCTTCAATTTTGTGGGTTCTTTTTATTCCCGTTGAATGATGAAGAAGTCTGAGCTTCACAATTTTCGTATGATTTGGGTTTATTATTTGTGAGAACAGACAGATACATGAAATCCTACTTTTGTATTAAGCTCTTGTTAGGTTCTAATTTCAAGACAACGCAAAGGTTCCATTTTTAATTGACTCATTTGGAATTCTTGTTTTTCCTCATACAAATGCTCCTTGTATATGGTTTCCAAGAGATTTTTGCATCTCTATCTGCTTAGGTTTCATTGGCAATCTTTGGGGTTGTTGTGGATGTATAACTAAAGACTGGATGAATTGTTGATTAGGGCATGAACTTGTAGATGATCAATCTAAGAGTAGACAAATAGCTTCTGAACTTGCACTCTTGTATGTGGGTTTATTGTCTCTTCTTATTGCAAAAAATGCA</gDNA_template>
            <first_frame> C  *  Y  S  Q  P  F  L  G  C  F  *  *  S  M  E  N  G  K  I  P  I  W  R  F  D  T  Q  M  W  T  I  L  F  S  Q  M  Q  L  L  *  L  L  P  E  N  P  L  I  K  D  L  H  I  V  T  L  P  *  L  L  F  F  L  C  P  I  L  S  F  I  L  L  G  E  S  L  S  S  P  L  Q  V  R  F  S  L  S  L  L  F  F  F  F  S  F  F  V  P  S  I  L  W  V  L  F  I  P  V  E  *  *  R  S  L  S  F  T  I  F  V  *  F  G  F  I  I  C  E  N  R  Q  I  H  E  I  L  L  L  Y  *  A  L  V  R  F  *  F  Q  D  N  A  K  V  P  F  L  I  D  S  F  G  I  L  V  F  P  H  T  N  A  P  C  I  W  F  P  R  D  F  C  I  S  I  C  L  G  F  I  G  N  L  W  G  C  C  G  C  I  T  K  D  W  M  N  C  *  L  G  H  E  L  V  D  D  Q  S  K  S  R  Q  I  A  S  E  L  A  L  L  Y  V  G  L  L  S  L  L  I  A  K  N  A </first_frame>
            <second_frame>  A  D  I  L  S  L  S  *  G  V  F  D  N  L  W  R  M  A  R  Y  P  Y  G  G  S  I  H  R  C  G  L  S  C  F  L  R  C  S  C  F  S  C  C  R  K  I  P  L  S  K  I  Y  I  S  L  L  S  L  D  C  F  S  S  C  A  Q  F  F  R  S  S  F  L  G  K  V  Y  L  L  R  F  R  *  D  F  P  F  L  F  S  F  S  F  F  L  S  L  S  L  Q  F  C  G  F  F  L  F  P  L  N  D  E  E  V  *  A  S  Q  F  S  Y  D  L  G  L  L  F  V  R  T  D  R  Y  M  K  S  Y  F  C  I  K  L  L  L  G  S  N  F  K  T  T  Q  R  F  H  F  *  L  T  H  L  E  F  L  F  F  L  I  Q  M  L  L  V  Y  G  F  Q  E  I  F  A  S  L  S  A  *  V  S  L  A  I  F  G  V  V  V  D  V  *  L  K  T  G  *  I  V  D  *  G  M  N  L  *  M  I  N  L  R  V  D  K  *  L  L  N  L  H  S  C  M  W  V  Y  C  L  F  L  L  Q  K  M   </second_frame>
            <third_frame>   L  I  F  S  A  F  L  R  V  F  L  I  I  Y  G  E  W  Q  D  T  H  M  E  V  R  Y  T  D  V  D  Y  L  V  F  S  D  A  A  A  L  V  A  A  G  K  S  P  Y  Q  R  S  T  Y  R  Y  S  P  L  I  A  F  L  L  V  P  N  S  F  V  H  P  S  W  G  K  F  I  F  S  A  S  G  E  I  F  P  F  S  S  L  F  L  F  F  F  L  C  P  F  N  F  V  G  S  F  Y  S  R  *  M  M  K  K  S  E  L  H  N  F  R  M  I  W  V  Y  Y  L  *  E  Q  T  D  T  *  N  P  T  F  V  L  S  S  C  *  V  L  I  S  R  Q  R  K  G  S  I  F  N  *  L  I  W  N  S  C  F  S  S  Y  K  C  S  L  Y  M  V  S  K  R  F  L  H  L  Y  L  L  R  F  H  W  Q  S  L  G  L  L  W  M  Y  N  *  R  L  D  E  L  L  I  R  A  *  T  C  R  *  S  I  *  E  *  T  N  S  F  *  T  C  T  L  V  C  G  F  I  V  S  S  Y  C  K  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63856" stop="64182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFSAFLRVFLIIYGEWQDTHMEVRYTDVDYLVFSDAAALVAAGKSPYQRSTYRYSPLIAFLLVPNSFVHPSWGKFIFSASGEIFPFSSLFLFFFLCPFNFVGSFYSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63793" e_stop="64099"/>
            <exon e_start="64663" e_stop="64845"/>
            <exon e_start="65562" e_stop="66109"/>
            <exon e_start="66205" e_stop="66790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.085" e_score="0.997"/>
          <exon-intron don_prob="0.948" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.912" acc_prob="0.414" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="63793" e_stop="64099" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.085">
            <gDNA_intron_boundary i_start="64100" i_stop="64662" i_length="563"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64663" e_stop="64845" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.979">
            <gDNA_intron_boundary i_start="64846" i_stop="65561" i_length="716"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="65562" e_stop="66109" e_length="548"/>
          </exon>
          <intron i_serial="3" don_prob="0.912" acc_prob="0.414">
            <gDNA_intron_boundary i_start="66110" i_stop="66204" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66205" e_stop="66790" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63793" stop="64099"/>
              <exon start="64663" stop="64845"/>
              <exon start="65562" stop="66109"/>
              <exon start="66205" stop="66790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTTTTGGGTATTGAGCGATCAGTTCCTGAATGATGGTGACTGTAAATCTGAAGTCGCTGCTGATATTCTCAGCCTTTCTTAGGGTGTTTTTGATAATCTATGGAGAATGGCAAGATACCCATATGGAGGTTCGATACACAGATGTGGACTATCTTGTTTTCTCAGATGCAGCTGCTTTAGTTGCTGCCGGAAAATCCCCTTATCAAAGATCTACATATCGTTACTCTCCCTTGATTGCTTTTCTTCTTGTGCCCAATTCTTTCGTTCATCCTTCTTGGGGAAAGTTTATCTTCTCCGCTTCAG : ATCTTCTCGTGGGATTTCTTATCAACGCCATTCTAAAGCTAAGAGGGGTGCCTGAGAAATTATGCACCTATTCGGTGATGGTATGGCTTTTGAATCCATTTACCTTTACCATTGGAACTCGTGGGAATTGTGAGCCCATCATCTGTGCCATAATCCTTTGGATTATTCTATGTCTAATGAATG : GTCGTTTAGTACAAGCTGCATTTTGGTATGGGCTTGTCGTCCACATGAGGATCTATCCAATAATTTATGCTCTTCCAATCATTTTAGTTCTTGATCCCTTGTTCTTCCAGTATGGTACAAAACCTGCTCTTGTGAATTGGAGTTCTAGAAAAAGTAAGTCACAGCAGACTTCCAGCTGTAAAAAGCTTATGGATCCTTGTTGTATGTGCAACTTTTTAACAAGCCTTTTTACCTGGAGGAGGATAATGTTTGGGCTTATTTCTGGAGCTTTGTTCTTTCTCCTTACTGGGATTTTCTTCTTTTTATATGGCTGCGATTTCTTGCATGAAGCACTGCTCTATCATCTCACACGTACAGACCCTAGGCACAATTTCTCAATTTATTTCTACCATATATATCTGCACTATGAACATGAGTTATCTATCTTGGAAAAGCTCGTCTCGTTTCTGCCTCAGATTATGGTGCAGCTAGTTCTTGTTTTCCGCTTTGCACAAGATTTTCCATTTTGCTTCTTTGTGCAGACTGTGGCATTTGTCGCATTTAACAAG : GTTATGACTGCTCAATACTTTGTTTGGTTCTTCTGTCTCTTGCCACTAATCCTGCCATGGACCAACATGAAGCTCGGAGGAAAAGGACTGGTCTGCATCTTGTTGTGGATGGCAGCTCAGGGTCACTGGTTATTGTGGGGTTATTTGCTTGAATTTAAAGGAAAGAATGTCTTTCTTCAACTCTGGGTGGCAGGTTTGCTGTTCTTGGCTGCAAATACTTTCGTTCTTATCAATATTATTCAGCAACACACATATAGTCCCGTCTTCCAACAGTCATCTCGTGCCTCTTCAAAGAAACAAGTCAAACAGAGATGAGGAATCAGATCATATACCTCCTAATTCACTGGGGGAGGAATTTTCGAGCTAGTAGTGTATTTAGCCATATTCGGTACTTGTAGAGCCTTTCATCATCAGGCAAAGCACTTGGCTTATTCATAGCTCCATGCTTAAAAATACCTTCACTAAAGATGTAGCAAGAGATCGTTATTTTGAAGTTTTGGTCGTTTTGCTTTTAGAGCATACGGAATGATAGCAATTTACAATTTGTTTGTTGCATTTGGTATAAGTTTAATTCAGTTAACCTCTC</gDNA_template>
            <first_frame> C  C  F  G  Y  *  A  I  S  S  *  M  M  V  T  V  N  L  K  S  L  L  I  F  S  A  F  L  R  V  F  L  I  I  Y  G  E  W  Q  D  T  H  M  E  V  R  Y  T  D  V  D  Y  L  V  F  S  D  A  A  A  L  V  A  A  G  K  S  P  Y  Q  R  S  T  Y  R  Y  S  P  L  I  A  F  L  L  V  P  N  S  F  V  H  P  S  W  G  K  F  I  F  S  A  S   : D  L  L  V  G  F  L  I  N  A  I  L  K  L  R  G  V  P  E  K  L  C  T  Y  S  V  M  V  W  L  L  N  P  F  T  F  T  I  G  T  R  G  N  C  E  P  I  I  C  A  I  I  L  W  I  I  L  C  L  M  N   : G  R  L  V  Q  A  A  F  W  Y  G  L  V  V  H  M  R  I  Y  P  I  I  Y  A  L  P  I  I  L  V  L  D  P  L  F  F  Q  Y  G  T  K  P  A  L  V  N  W  S  S  R  K  S  K  S  Q  Q  T  S  S  C  K  K  L  M  D  P  C  C  M  C  N  F  L  T  S  L  F  T  W  R  R  I  M  F  G  L  I  S  G  A  L  F  F  L  L  T  G  I  F  F  F  L  Y  G  C  D  F  L  H  E  A  L  L  Y  H  L  T  R  T  D  P  R  H  N  F  S  I  Y  F  Y  H  I  Y  L  H  Y  E  H  E  L  S  I  L  E  K  L  V  S  F  L  P  Q  I  M  V  Q  L  V  L  V  F  R  F  A  Q  D  F  P  F  C  F  F  V  Q  T  V  A  F  V  A  F  N  K  :  V  M  T  A  Q  Y  F  V  W  F  F  C  L  L  P  L  I  L  P  W  T  N  M  K  L  G  G  K  G  L  V  C  I  L  L  W  M  A  A  Q  G  H  W  L  L  W  G  Y  L  L  E  F  K  G  K  N  V  F  L  Q  L  W  V  A  G  L  L  F  L  A  A  N  T  F  V  L  I  N  I  I  Q  Q  H  T  Y  S  P  V  F  Q  Q  S  S  R  A  S  S  K  K  Q  V  K  Q  R  *  G  I  R  S  Y  T  S  *  F  T  G  G  G  I  F  E  L  V  V  Y  L  A  I  F  G  T  C  R  A  F  H  H  Q  A  K  H  L  A  Y  S  *  L  H  A  *  K  Y  L  H  *  R  C  S  K  R  S  L  F  *  S  F  G  R  F  A  F  R  A  Y  G  M  I  A  I  Y  N  L  F  V  A  F  G  I  S  L  I  Q  L  T  S  </first_frame>
            <second_frame>  V  V  L  G  I  E  R  S  V  P  E  *  W  *  L  *  I  *  S  R  C  *  Y  S  Q  P  F  L  G  C  F  *  *  S  M  E  N  G  K  I  P  I  W  R  F  D  T  Q  M  W  T  I  L  F  S  Q  M  Q  L  L  *  L  L  P  E  N  P  L  I  K  D  L  H  I  V  T  L  P  *  L  L  F  F  L  C  P  I  L  S  F  I  L  L  G  E  S  L  S  S  P  L  Q  :  I  F  S  W  D  F  L  S  T  P  F  *  S  *  E  G  C  L  R  N  Y  A  P  I  R  *  W  Y  G  F  *  I  H  L  P  L  P  L  E  L  V  G  I  V  S  P  S  S  V  P  *  S  F  G  L  F  Y  V  *  *  M  :  V  V  *  Y  K  L  H  F  G  M  G  L  S  S  T  *  G  S  I  Q  *  F  M  L  F  Q  S  F  *  F  L  I  P  C  S  S  S  M  V  Q  N  L  L  L  *  I  G  V  L  E  K  V  S  H  S  R  L  P  A  V  K  S  L  W  I  L  V  V  C  A  T  F  *  Q  A  F  L  P  G  G  G  *  C  L  G  L  F  L  E  L  C  S  F  S  L  L  G  F  S  S  F  Y  M  A  A  I  S  C  M  K  H  C  S  I  I  S  H  V  Q  T  L  G  T  I  S  Q  F  I  S  T  I  Y  I  C  T  M  N  M  S  Y  L  S  W  K  S  S  S  R  F  C  L  R  L  W  C  S  *  F  L  F  S  A  L  H  K  I  F  H  F  A  S  L  C  R  L  W  H  L  S  H  L  T  R :   L  *  L  L  N  T  L  F  G  S  S  V  S  C  H  *  S  C  H  G  P  T  *  S  S  E  E  K  D  W  S  A  S  C  C  G  W  Q  L  R  V  T  G  Y  C  G  V  I  C  L  N  L  K  E  R  M  S  F  F  N  S  G  W  Q  V  C  C  S  W  L  Q  I  L  S  F  L  S  I  L  F  S  N  T  H  I  V  P  S  S  N  S  H  L  V  P  L  Q  R  N  K  S  N  R  D  E  E  S  D  H  I  P  P  N  S  L  G  E  E  F  S  S  *  *  C  I  *  P  Y  S  V  L  V  E  P  F  I  I  R  Q  S  T  W  L  I  H  S  S  M  L  K  N  T  F  T  K  D  V  A  R  D  R  Y  F  E  V  L  V  V  L  L  L  E  H  T  E  *  *  Q  F  T  I  C  L  L  H  L  V  *  V  *  F  S  *  P  L </second_frame>
            <third_frame>   L  F  W  V  L  S  D  Q  F  L  N  D  G  D  C  K  S  E  V  A  A  D  I  L  S  L  S  *  G  V  F  D  N  L  W  R  M  A  R  Y  P  Y  G  G  S  I  H  R  C  G  L  S  C  F  L  R  C  S  C  F  S  C  C  R  K  I  P  L  S  K  I  Y  I  S  L  L  S  L  D  C  F  S  S  C  A  Q  F  F  R  S  S  F  L  G  K  V  Y  L  L  R  F  R :   S  S  R  G  I  S  Y  Q  R  H  S  K  A  K  R  G  A  *  E  I  M  H  L  F  G  D  G  M  A  F  E  S  I  Y  L  Y  H  W  N  S  W  E  L  *  A  H  H  L  C  H  N  P  L  D  Y  S  M  S  N  E  W :   S  F  S  T  S  C  I  L  V  W  A  C  R  P  H  E  D  L  S  N  N  L  C  S  S  N  H  F  S  S  *  S  L  V  L  P  V  W  Y  K  T  C  S  C  E  L  E  F  *  K  K  *  V  T  A  D  F  Q  L  *  K  A  Y  G  S  L  L  Y  V  Q  L  F  N  K  P  F  Y  L  E  E  D  N  V  W  A  Y  F  W  S  F  V  L  S  P  Y  W  D  F  L  L  F  I  W  L  R  F  L  A  *  S  T  A  L  S  S  H  T  Y  R  P  *  A  Q  F  L  N  L  F  L  P  Y  I  S  A  L  *  T  *  V  I  Y  L  G  K  A  R  L  V  S  A  S  D  Y  G  A  A  S  S  C  F  P  L  C  T  R  F  S  I  L  L  L  C  A  D  C  G  I  C  R  I  *  Q   : G  Y  D  C  S  I  L  C  L  V  L  L  S  L  A  T  N  P  A  M  D  Q  H  E  A  R  R  K  R  T  G  L  H  L  V  V  D  G  S  S  G  S  L  V  I  V  G  L  F  A  *  I  *  R  K  E  C  L  S  S  T  L  G  G  R  F  A  V  L  G  C  K  Y  F  R  S  Y  Q  Y  Y  S  A  T  H  I  *  S  R  L  P  T  V  I  S  C  L  F  K  E  T  S  Q  T  E  M  R  N  Q  I  I  Y  L  L  I  H  W  G  R  N  F  R  A  S  S  V  F  S  H  I  R  Y  L  *  S  L  S  S  S  G  K  A  L  G  L  F  I  A  P  C  L  K  I  P  S  L  K  M  *  Q  E  I  V  I  L  K  F  W  S  F  C  F  *  S  I  R  N  D  S  N  L  Q  F  V  C  C  I  W  Y  K  F  N  S  V  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63826" stop="64099"/>
                    <exon start="64663" stop="64845"/>
                    <exon start="65562" stop="66109"/>
                    <exon start="66205" stop="66519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMVTVNLKSLLIFSAFLRVFLIIYGEWQDTHMEVRYTDVDYLVFSDAAALVAAGKSPYQRSTYRYSPLIAFLLVPNSFVHPSWGKFIFSASDLLVGFLINAILKLRGVPEKLCTYSVMVWLLNPFTFTIGTRGNCEPIICAIILWIILCLMNGRLVQAAFWYGLVVHMRIYPIIYALPIILVLDPLFFQYGTKPALVNWSSRKSKSQQTSSCKKLMDPCCMCNFLTSLFTWRRIMFGLISGALFFLLTGIFFFLYGCDFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEHELSILEKLVSFLPQIMVQLVLVFRFAQDFPFCFFVQTVAFVAFNKVMTAQYFVWFFCLLPLILPWTNMKLGGKGLVCILLWMAAQGHWLLWGYLLEFKGKNVFLQLWVAGLLFLAANTFVLINIIQQHTYSPVFQQSSRASSKKQVKQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="72626" PGL_stop="73859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72626" e_stop="72857"/>
            <exon e_start="72952" e_stop="73216"/>
            <exon e_start="73357" e_stop="73859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.992" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="72626" e_stop="72857" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72858" i_stop="72951" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72952" e_stop="73216" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.894">
            <gDNA_intron_boundary i_start="73217" i_stop="73356" i_length="140"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="73357" e_stop="73859" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72626" stop="72857"/>
              <exon start="72952" stop="73216"/>
              <exon start="73357" stop="73859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCCATCTTCTCCTTTCCTCATTCACTATATAAATCCTCTCCGCCCTTCTTTCTCATATCTCATCCCACAACAAACGTAGCGTTTTGCTTTTGCAACAATCGAGATTCAAAAAACCATGTTTACAGAAGTTGAACAACAACAGCATATAGAGAAACTCGAAATATTCAAGATCCAAGGCAGAGATAAACGTGGCCGCAAAATTTTGCGCATCATCGGAAAATTCTTTCCTG : CTAGAAATCTGAGTGTTGAAGTTGTGAACAAGTATTTAGCGGAGAAGATCTTTCCGGAACTTGAGAAAAGGCCGTTCGCCGTGGTGTATGTTCACACCGATGTGGAGAAAAGCGAGAATTTCCCCGGAGTATCAGCTTTACGATCGTTCTACGATGCGATTCCGGTGAAAGTCCGAGAGAATCTGGAGGCTATTTACTTTCTTCACCCTGGTCTTCAAGCCAGGCTCTTCCTTGCCACATTTGGTCGCTTCATCTTCAGCGGAGG : GTTATATGGGAAATTGAGGTATGTGAGCAGGGTTGATAATCTGTGGGAGCATGTGAGGAGGAATGAGATTGGGATGCCAGAATTTGTGTACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTGGAGAGTGATCATGCCAGGGTCTATGGCGATGCGCCTGCCGTAGACTCACCTGTTACAATGTACTCCATGAGATGCATCTCATAAGATAATTGGAAGCCTTTTGCAGTCTTTTCGGTTCATAGTTAGATGTGTAGGAACCTCATGGCTTTCTTTTTTCTTCCTCCATCTGATGCAATTTTTTTGCTCTGTATATACGATTAGATGGAGGTTAGCAACTAGCAAGCACTTTTTTCTTCTTGTTGTTGTTATATAGTAATAGTACAAAGGTCATCAACTTTGAAAGCAATGATGATTTCCTATCTGAAAAATCCTGGAATGTTGTTATCTTTCTTCTGGAAGATGAATATATATACTTTTATGAGGA</gDNA_template>
            <first_frame> R  P  S  S  P  F  L  I  H  Y  I  N  P  L  R  P  S  F  S  Y  L  I  P  Q  Q  T  *  R  F  A  F  A  T  I  E  I  Q  K  T  M  F  T  E  V  E  Q  Q  Q  H  I  E  K  L  E  I  F  K  I  Q  G  R  D  K  R  G  R  K  I  L  R  I  I  G  K  F  F  P   : A  R  N  L  S  V  E  V  V  N  K  Y  L  A  E  K  I  F  P  E  L  E  K  R  P  F  A  V  V  Y  V  H  T  D  V  E  K  S  E  N  F  P  G  V  S  A  L  R  S  F  Y  D  A  I  P  V  K  V  R  E  N  L  E  A  I  Y  F  L  H  P  G  L  Q  A  R  L  F  L  A  T  F  G  R  F  I  F  S  G  G :   L  Y  G  K  L  R  Y  V  S  R  V  D  N  L  W  E  H  V  R  R  N  E  I  G  M  P  E  F  V  Y  D  H  D  E  D  L  E  Y  R  P  M  M  D  Y  G  L  E  S  D  H  A  R  V  Y  G  D  A  P  A  V  D  S  P  V  T  M  Y  S  M  R  C  I  S  *  D  N  W  K  P  F  A  V  F  S  V  H  S  *  M  C  R  N  L  M  A  F  F  F  L  P  P  S  D  A  I  F  L  L  C  I  Y  D  *  M  E  V  S  N  *  Q  A  L  F  S  S  C  C  C  Y  I  V  I  V  Q  R  S  S  T  L  K  A  M  M  I  S  Y  L  K  N  P  G  M  L  L  S  F  F  W  K  M  N  I  Y  T  F  M  R  </first_frame>
            <second_frame>  A  H  L  L  L  S  S  F  T  I  *  I  L  S  A  L  L  S  H  I  S  S  H  N  K  R  S  V  L  L  L  Q  Q  S  R  F  K  K  P  C  L  Q  K  L  N  N  N  S  I  *  R  N  S  K  Y  S  R  S  K  A  E  I  N  V  A  A  K  F  C  A  S  S  E  N  S  F  L  :  L  E  I  *  V  L  K  L  *  T  S  I  *  R  R  R  S  F  R  N  L  R  K  G  R  S  P  W  C  M  F  T  P  M  W  R  K  A  R  I  S  P  E  Y  Q  L  Y  D  R  S  T  M  R  F  R  *  K  S  E  R  I  W  R  L  F  T  F  F  T  L  V  F  K  P  G  S  S  L  P  H  L  V  A  S  S  S  A  E   : G  Y  M  G  N  *  G  M  *  A  G  L  I  I  C  G  S  M  *  G  G  M  R  L  G  C  Q  N  L  C  T  I  M  M  K  I  L  S  T  V  R  *  W  T  M  A  W  R  V  I  M  P  G  S  M  A  M  R  L  P  *  T  H  L  L  Q  C  T  P  *  D  A  S  H  K  I  I  G  S  L  L  Q  S  F  R  F  I  V  R  C  V  G  T  S  W  L  S  F  F  F  L  H  L  M  Q  F  F  C  S  V  Y  T  I  R  W  R  L  A  T  S  K  H  F  F  L  L  V  V  V  I  *  *  *  Y  K  G  H  Q  L  *  K  Q  *  *  F  P  I  *  K  I  L  E  C  C  Y  L  S  S  G  R  *  I  Y  I  L  L  *  G </second_frame>
            <third_frame>   P  I  F  S  F  P  H  S  L  Y  K  S  S  P  P  F  F  L  I  S  H  P  T  T  N  V  A  F  C  F  C  N  N  R  D  S  K  N  H  V  Y  R  S  *  T  T  T  A  Y  R  E  T  R  N  I  Q  D  P  R  Q  R  *  T  W  P  Q  N  F  A  H  H  R  K  I  L  S  C :   *  K  S  E  C  *  S  C  E  Q  V  F  S  G  E  D  L  S  G  T  *  E  K  A  V  R  R  G  V  C  S  H  R  C  G  E  K  R  E  F  P  R  S  I  S  F  T  I  V  L  R  C  D  S  G  E  S  P  R  E  S  G  G  Y  L  L  S  S  P  W  S  S  S  Q  A  L  P  C  H  I  W  S  L  H  L  Q  R  R  :  V  I  W  E  I  E  V  C  E  Q  G  *  *  S  V  G  A  C  E  E  E  *  D  W  D  A  R  I  C  V  R  S  *  *  R  S  *  V  P  S  D  D  G  L  W  P  G  E  *  S  C  Q  G  L  W  R  C  A  C  R  R  L  T  C  Y  N  V  L  H  E  M  H  L  I  R  *  L  E  A  F  C  S  L  F  G  S  *  L  D  V  *  E  P  H  G  F  L  F  S  S  S  I  *  C  N  F  F  A  L  Y  I  R  L  D  G  G  *  Q  L  A  S  T  F  F  F  L  L  L  L  Y  S  N  S  T  K  V  I  N  F  E  S  N  D  D  F  L  S  E  K  S  W  N  V  V  I  F  L  L  E  D  E  Y  I  Y  F  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72707" stop="72857"/>
                    <exon start="72952" stop="73216"/>
                    <exon start="73357" stop="73579"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFAFATIEIQKTMFTEVEQQQHIEKLEIFKIQGRDKRGRKILRIIGKFFPARNLSVEVVNKYLAEKIFPELEKRPFAVVYVHTDVEKSENFPGVSALRSFYDAIPVKVRENLEAIYFLHPGLQARLFLATFGRFIFSGGLYGKLRYVSRVDNLWEHVRRNEIGMPEFVYDHDEDLEYRPMMDYGLESDHARVYGDAPAVDSPVTMYSMRCIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="88620" PGL_stop="79004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88620" e_stop="88323"/>
            <exon e_start="88241" e_stop="88003"/>
            <exon e_start="79101" e_stop="79004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88620" e_stop="88323" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88322" i_stop="88242" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88241" e_stop="88003" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88002" i_stop="79102" i_length="8901"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="79101" e_stop="79004" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88620" stop="88323"/>
              <exon start="88241" stop="88003"/>
              <exon start="79101" stop="79004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCTCCTTTCTGAAGCTGAGAGGAGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT : AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG : GACAATCCCAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGG</gDNA_template>
            <first_frame> K  P  P  F  *  S  *  E  E  T  K  E  A  K  T  R  S  V  L  N  K  *  N  *  L  K  N  G  V  L  K  *  K  L  T  Y  R  L  I  K  T  L  C  Y  L  S  C  S  K  K  K  Q  N  N  Y  S  T  V  *  I  S  S  V  E  V  *  P  R  L  R  H  H  G  F  A  L  P  L  L  A  G  G  G  C  Q  G  P  D  G  P  V  R  H  C  Q  R  R  R  N   : *  I  N  V  C  G  A  H  *  A  W  *  D  Y  G  V  E  R  S  S  T  W  D  D  *  S  E  D  E  V  *  D  V  Y  G  E  H  G  *  C  P  G  H  F  G  H  L  E  L  A  K  P  M  F  H  I  G  F  M  E  P  V  L  S  I  L  R  C  V  C  F  N  C  S  K  I  L  A  D  E  :  D  N  P  K  F  K  Q  A  M  R  I  R  N  P  K  N  R  L  R  K  M  L  D  A  C  K  N  K  T  K  C  E   </first_frame>
            <second_frame>  S  L  L  S  E  A  E  R  R  R  K  K  R  K  P  D  L  Y  *  T  S  E  I  D  *  R  M  E  S  *  N  R  N  L  H  I  D  *  S  K  P  S  V  I  Y  L  V  R  K  K  N  K  I  I  I  L  L  Y  K  F  L  L  *  R  C  N  L  G  C  A  T  M  D  L  R  F  P  F  *  P  A  E  V  A  K  V  R  T  V  Q  F  G  I  V  S  A  D  E  I  :  R  *  M  S  V  V  H  I  E  H  G  E  T  T  E  L  S  D  P  R  L  G  T  I  D  R  K  M  K  C  K  T  C  M  A  N  M  A  D  V  R  G  I  L  V  T  L  S  L  R  N  L  C  F  I  *  V  L  W  N  L  F  L  V  S  F  G  V  S  A  S  I  A  P  K  F  W  R  M  R :   T  I  P  S  S  N  K  P  *  E  S  G  I  L  K  T  G  L  E  R  C  W  M  L  A  R  T  K  Q  N  V  K  </second_frame>
            <third_frame>   A  S  F  L  K  L  R  G  D  E  R  S  E  N  Q  I  C  T  E  Q  V  K  L  T  E  E  W  S  L  K  I  E  T  Y  I  *  I  N  Q  N  P  L  L  S  I  L  F  E  K  K  T  K  *  L  F  Y  C  I  N  F  F  C  R  G  V  T  *  V  A  P  P  W  I  C  A  S  P  S  S  R  R  R  L  P  R  S  G  R  S  S  S  A  L  S  A  P  T  K  L :   D  K  C  L  W  C  T  L  S  M  V  R  L  R  S  *  A  I  L  D  L  G  R  L  I  G  R  *  S  V  R  R  V  W  R  T  W  L  M  S  G  A  F  W  S  P  *  A  C  E  T  Y  V  S  Y  R  F  Y  G  T  C  S  *  Y  P  S  V  C  L  L  Q  L  L  Q  N  S  G  G  *   : G  Q  S  Q  V  Q  T  S  H  E  N  Q  E  S  *  K  Q  A  *  K  D  V  G  C  L  Q  E  Q  N  K  M  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88125" stop="88003"/>
                    <exon start="79101" stop="79006"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPGHFGHLELAKPMFHIGFMEPVLSILRCVCFNCSKILADEDNPKFKQAMRIRNPKNRLRKMLDACKNKTKCE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87819" e_stop="86857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87819" e_stop="86857" e_length="963"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87819" stop="86857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTACATTTCCTTACGGTTTCACGGTTTCACTGATGAATGAAGGGGAAAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTTTCTCTATGCATTATTTCTGATCCTGGAATTCAGACCCCATATGAGACCGGCGTCGTTGACCTCTCAGAAGTCGCAAACAAGCCTACTTACGTCATTCTTACTTTACATAGGTTAATTTGTAACGATTCAAAAAAAAAGAAGAGAATTATGTAAATAAGAATAAATAGGTATTTAAGGGCATAATTGTCCTTTCACGTTTTAAATGAATAAATAAATAAATAAATAAAACAGATTTGTATTTATTTATTTTAATGTTATTTGACTAATTCTTGAATTAGTCTCCTAATCC</gDNA_template>
            <first_frame> F  R  F  A  S  G  G  L  E  T  S  F  E  Q  V  Q  A  E  E  V  L  I  E  Q  Y  F  S  I  T  S  T  *  P  F  L  G  D  S  F  Y  L  L  T  S  *  S  G  F  G  S  S  V  N  C  I  F  L  E  C  C  K  F  R  H  A  F  L  F  F  F  L  L  E  G  R  N  D  K  I  L  *  L  H  T  S  V  N  R  W  K  I  H  F  K  R  R  N  I  K  N  S  M  N  D  Q  I  R  E  K  S  S  N  T  S  Y  M  S  S  F  Y  L  R  R  I  M  K  K  E  *  G  K  *  K  A  Q  D  *  K  I  N  V  L  K  L  P  S  L  I  S  I  H  *  T  *  L  K  *  R  V  V  K  L  T  P  F  *  L  F  I  Q  R  *  E  S  D  Y  N  L  C  I  E  V  I  L  K  L  D  N  T  *  W  S  C  Y  I  S  L  R  F  H  G  F  T  D  E  *  R  G  K  K  T  W  S  N  L  D  V  S  *  G  R  K  W  S  F  L  Y  A  L  F  L  I  L  E  F  R  P  H  M  R  P  A  S  L  T  S  Q  K  S  Q  T  S  L  L  T  S  F  L  L  Y  I  G  *  F  V  T  I  Q  K  K  R  R  E  L  C  K  *  E  *  I  G  I  *  G  H  N  C  P  F  T  F  *  M  N  K  *  I  N  K  *  N  R  F  V  F  I  Y  F  N  V  I  *  L  I  L  E  L  V  S  *  S </first_frame>
            <second_frame>  S  G  L  P  V  E  V  *  K  Q  V  L  N  K  Y  R  L  R  K  F  *  *  S  S  I  S  L  L  H  Q  H  D  P  F  *  E  I  A  S  I  Y  L  L  V  N  Q  D  L  V  V  Q  *  I  V  F  F  W  N  V  A  N  F  V  M  P  F  Y  F  S  S  C  *  K  G  E  M  I  K  Y  S  N  C  I  P  V  *  I  D  G  R  F  I  L  K  E  G  T  *  R  T  L  *  M  I  K  L  G  K  R  V  A  T  L  P  I  *  V  A  F  T  F  E  E  S  *  K  R  S  K  V  S  E  K  L  R  I  R  R  *  M  F  *  S  S  R  V  *  Y  P  F  T  R  L  D  *  N  K  E  *  S  N  S  L  H  F  D  C  L  F  N  G  E  N  R  I  I  I  Y  V  *  R  *  F  *  N  *  T  T  L  N  G  L  A  T  F  P  Y  G  F  T  V  S  L  M  N  E  G  E  K  K  L  G  L  I  L  T  S  H  K  E  G  S  G  R  F  S  M  H  Y  F  *  S  W  N  S  D  P  I  *  D  R  R  R  *  P  L  R  S  R  K  Q  A  Y  L  R  H  S  Y  F  T  *  V  N  L  *  R  F  K  K  K  E  E  N  Y  V  N  K  N  K  *  V  F  K  G  I  I  V  L  S  R  F  K  *  I  N  K  *  I  N  K  T  D  L  Y  L  F  I  L  M  L  F  D  *  F  L  N  *  S  P  N   </second_frame>
            <third_frame>   Q  V  C  Q  W  R  S  R  N  K  F  *  T  S  T  G  *  G  S  F  D  R  A  V  F  L  Y  Y  I  N  M  T  L  F  R  R  *  L  L  F  T  Y  *  L  I  R  I  W  *  F  S  E  L  Y  F  S  G  M  L  Q  I  S  S  C  L  F  I  F  L  P  V  R  R  E  K  *  *  N  T  L  I  A  Y  Q  C  E  *  M  E  D  S  F  *  K  K  E  H  K  E  L  Y  E  *  S  N  *  G  K  E  *  Q  H  F  L  Y  E  *  L  L  P  S  K  N  H  E  K  G  V  R  *  V  K  S  S  G  L  E  D  K  C  S  E  A  P  E  S  N  I  H  S  L  D  L  I  E  I  K  S  S  Q  T  H  S  I  L  I  V  Y  S  T  V  R  I  G  L  *  F  M  Y  R  G  D  S  K  I  R  Q  H  L  M  V  L  L  H  F  L  T  V  S  R  F  H  *  *  M  K  G  K  K  N  L  V  *  S  *  R  L  I  R  K  E  V  V  V  S  L  C  I  I  S  D  P  G  I  Q  T  P  Y  E  T  G  V  V  D  L  S  E  V  A  N  K  P  T  Y  V  I  L  T  L  H  R  L  I  C  N  D  S  K  K  K  K  R  I  M  *  I  R  I  N  R  Y  L  R  A  *  L  S  F  H  V  L  N  E  *  I  N  K  *  I  K  Q  I  C  I  Y  L  F  *  C  Y  L  T  N  S  *  I  S  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0060J03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88503" e_stop="88323"/>
            <exon e_start="88241" e_stop="88003"/>
            <exon e_start="83761" e_stop="83502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.989"/>
          <exon-intron don_prob="0.966" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="88503" e_stop="88323" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88322" i_stop="88242" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88241" e_stop="88003" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.965">
            <gDNA_intron_boundary i_start="88002" i_stop="83762" i_length="4241"/>
          </intron>
          <exon e_serial="3" e_score="0.958">
            <gDNA_exon_boundary e_start="83761" e_stop="83502" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88503" stop="88323"/>
              <exon start="88241" stop="88003"/>
              <exon start="83761" stop="83502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566748" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT : AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTGATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG : GTGCAGGCACAGGTGGACGCTAGAGCTACATGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATACTTAATGAATTATTTCTTTCAGTTGCTTATCTCTT</gDNA_template>
            <first_frame> K  T  L  C  Y  L  S  C  S  K  K  K  Q  N  N  Y  S  T  V  *  I  S  S  V  E  V  *  P  R  L  R  H  H  G  F  A  L  P  L  L  A  G  G  G  C  Q  G  P  D  G  P  V  R  H  C  Q  R  R  R  N   : *  I  N  V  C  G  A  H  *  A  W  *  D  Y  G  V  E  R  S  S  T  W  D  D  *  S  E  D  E  V  *  D  V  Y  G  E  H  G  *  C  P  G  H  F  G  H  L  E  L  A  K  P  M  F  H  I  G  F  M  E  P  V  L  S  I  L  R  C  V  C  F  N  C  S  K  I  L  A  D  E  :  V  Q  A  Q  V  D  A  R  A  T  C  S  L  L  Q  L  S  G  H  Q  Y  S  S  G  V  W  *  V  L  M  L  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  K  L  C  I  G  A  I  L  A  D  I  Q  L  I  L  N  E  L  F  L  S  V  A  Y  L   </first_frame>
            <second_frame>  K  P  S  V  I  Y  L  V  R  K  K  N  K  I  I  I  L  L  Y  K  F  L  L  *  R  C  N  L  G  C  A  T  M  D  L  R  F  P  F  *  P  A  E  V  A  K  V  R  T  V  Q  F  G  I  V  S  A  D  E  I  :  R  *  M  S  V  V  H  I  E  H  G  E  T  T  E  L  S  D  P  R  L  G  T  I  D  R  K  M  K  C  K  T  C  M  A  N  M  A  D  V  R  G  I  L  V  T  L  S  L  R  N  L  C  F  I  *  V  L  W  N  L  F  L  V  S  F  G  V  S  A  S  I  A  P  K  F  W  R  M  R :   C  R  H  R  W  T  L  E  L  H  V  R  C  C  S  Y  P  D  I  S  I  H  P  E  F  G  R  S  S  C  F  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  A  E  H  V  P  L  A  F  L  S  C  F  G  S  N  F  V  L  V  L  F  W  P  I  Y  N  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  </second_frame>
            <third_frame>   N  P  L  L  S  I  L  F  E  K  K  T  K  *  L  F  Y  C  I  N  F  F  C  R  G  V  T  *  V  A  P  P  W  I  C  A  S  P  S  S  R  R  R  L  P  R  S  G  R  S  S  S  A  L  S  A  P  T  K  L :   D  K  C  L  W  C  T  L  S  M  V  R  L  R  S  *  A  I  L  D  L  G  R  L  I  G  R  *  S  V  R  R  V  W  R  T  W  L  M  S  G  A  F  W  S  P  *  A  C  E  T  Y  V  S  Y  R  F  Y  G  T  C  S  *  Y  P  S  V  C  L  L  Q  L  L  Q  N  S  G  G  *   : G  A  G  T  G  G  R  *  S  Y  M  F  V  V  A  A  I  R  T  S  V  F  I  R  S  L  V  G  P  H  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  R  S  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  I  N  T  *  *  I  I  S  F  S  C  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88125" stop="88003"/>
                    <exon start="83761" stop="83681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPGHFGHLELAKPMFHIGFMEPVLSILRCVCFNCSKILADEVQAQVDARATCSLLQLSGHQYSSGVW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="88014" PGL_stop="88521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88014" e_stop="88521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88014" e_stop="88521" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88014" stop="88521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTCAACTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAAACGAAGAAACAAAAACTAAATCAAATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAG</gDNA_template>
            <first_frame> E  F  W  S  N  *  S  R  H  T  E  G  Y  *  E  Q  V  P  *  N  L  Y  E  T  *  V  S  Q  A  Q  G  D  Q  N  A  P  D  I  S  H  V  R  H  T  R  L  T  L  H  L  P  I  N  R  P  K  S  R  I  A  Q  L  R  S  L  T  M  L  N  V  H  H  R  H  L  S  L  E  T  K  K  Q  K  L  N  Q  I  *  T  L  E  N  S  T  K  *  I  K  I  S  E  N  Y  N  F  V  G  A  D  N  A  E  L  D  R  P  D  L  G  N  L  R  R  L  E  G  E  A  Q  I  H  G  G  A  T  *  V  T  P  L  Q  K  K  F  I  Q  *  N  N  Y  F  V  F  F  S  N  K  I  D  N  R  G  F  *  L  I  Y  M  *  </first_frame>
            <second_frame>  N  F  G  A  I  E  A  D  T  P  K  D  T  K  N  R  F  H  K  T  Y  M  K  H  R  F  R  K  L  K  V  T  K  M  P  R  T  S  A  M  F  A  I  H  V  L  H  F  I  F  R  S  I  V  P  S  R  G  S  L  N  S  V  V  S  P  C  S  M  C  T  T  D  I  Y  L  W  K  R  R  N  K  N  *  I  K  F  K  P  *  R  I  Q  Q  N  E  S  R  L  V  K  I  T  I  S  S  A  L  T  M  P  N  W  T  V  R  T  L  A  T  S  A  G  *  K  G  K  R  K  S  M  V  A  Q  P  R  L  H  L  Y  R  R  N  L  Y  S  R  I  I  I  L  F  F  F  R  T  R  *  I  T  E  G  F  D  *  S  I  C  K </second_frame>
            <third_frame>   I  L  E  Q  L  K  Q  T  H  R  R  I  L  R  T  G  S  I  K  P  I  *  N  I  G  F  A  S  S  R  *  P  K  C  P  G  H  Q  P  C  S  P  Y  T  S  Y  T  S  S  S  D  Q  S  S  Q  V  E  D  R  S  T  P  *  S  H  H  A  Q  C  A  P  Q  T  F  I  S  G  N  E  E  T  K  T  K  S  N  L  N  P  R  E  F  N  K  M  N  Q  D  *  *  K  L  Q  F  R  R  R  *  Q  C  R  T  G  P  S  G  P  W  Q  P  P  P  A  R  R  G  S  A  N  P  W  W  R  N  L  G  Y  T  S  T  E  E  I  Y  T  V  E  *  L  F  C  F  F  F  E  Q  D  R  *  Q  R  V  L  I  N  L  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88015" stop="88266"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFGAIEADTPKDTKNRFHKTYMKHRFRKLKVTKMPRTSAMFAIHVLHFIFRSIVPSRGSLNSVVSPCSMCTTDIYLWKRRNKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="97719" PGL_stop="98179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97719" e_stop="98179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="97719" e_stop="98179" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97719" stop="98179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAACGAAAATGACTTTTGTCTAGAATTTACTGAAAAAGCAGTGACATACAATACTTTTCACATAATATTTTTGACTAACACATAAAATGGATCATAGGAGTAAATGTCATTGGAGAGAAAATCTCAGTTGAGCCAGCTAGGAGGTGGCCAGAAAAAATCAGTGTAACCGGGGAAACATGCCATTGGCCCAATAAACGCGTTCTCCATGTCAAATCCCCCAAGTGAATAGTCATTTTCATGTTTTAGCGCATCCCAAAAATCATGGAGATCTCCATCCCCAGCTTTCCTGAATTGATCTATGAAGTAAACTAAATTTCCTCTGCACCCTGGAAAATCTTTAGCAGACACACAGTAGGACCAATACGATGCATCATCTCCAACAAATATGACTTGGTCATTCAAGTTTGTAACTTCCTTCCAATAATGCTCCTCTTCCTCAAATTTATACACTCTGAATCT</gDNA_template>
            <first_frame> L  N  E  N  D  F  C  L  E  F  T  E  K  A  V  T  Y  N  T  F  H  I  I  F  L  T  N  T  *  N  G  S  *  E  *  M  S  L  E  R  K  S  Q  L  S  Q  L  G  G  G  Q  K  K  S  V  *  P  G  K  H  A  I  G  P  I  N  A  F  S  M  S  N  P  P  S  E  *  S  F  S  C  F  S  A  S  Q  K  S  W  R  S  P  S  P  A  F  L  N  *  S  M  K  *  T  K  F  P  L  H  P  G  K  S  L  A  D  T  Q  *  D  Q  Y  D  A  S  S  P  T  N  M  T  W  S  F  K  F  V  T  S  F  Q  *  C  S  S  S  S  N  L  Y  T  L  N   </first_frame>
            <second_frame>  *  T  K  M  T  F  V  *  N  L  L  K  K  Q  *  H  T  I  L  F  T  *  Y  F  *  L  T  H  K  M  D  H  R  S  K  C  H  W  R  E  N  L  S  *  A  S  *  E  V  A  R  K  N  Q  C  N  R  G  N  M  P  L  A  Q  *  T  R  S  P  C  Q  I  P  Q  V  N  S  H  F  H  V  L  A  H  P  K  N  H  G  D  L  H  P  Q  L  S  *  I  D  L  *  S  K  L  N  F  L  C  T  L  E  N  L  *  Q  T  H  S  R  T  N  T  M  H  H  L  Q  Q  I  *  L  G  H  S  S  L  *  L  P  S  N  N  A  P  L  P  Q  I  Y  T  L  *  I  </second_frame>
            <third_frame>   K  R  K  *  L  L  S  R  I  Y  *  K  S  S  D  I  Q  Y  F  S  H  N  I  F  D  *  H  I  K  W  I  I  G  V  N  V  I  G  E  K  I  S  V  E  P  A  R  R  W  P  E  K  I  S  V  T  G  E  T  C  H  W  P  N  K  R  V  L  H  V  K  S  P  K  *  I  V  I  F  M  F  *  R  I  P  K  I  M  E  I  S  I  P  S  F  P  E  L  I  Y  E  V  N  *  I  S  S  A  P  W  K  I  F  S  R  H  T  V  G  P  I  R  C  I  I  S  N  K  Y  D  L  V  I  Q  V  C  N  F  L  P  I  M  L  L  F  L  K  F  I  H  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0060J03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="99177" PGL_stop="98488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99177" e_stop="98488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="99177" e_stop="98488" e_length="690"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99177" stop="98488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACTAAACTGCAGTTTTGGTGAAGATGAAAGAGAAGAAGATGAAGAAGCTGTATTCTTGGCCCATATGGGCTGATCTTCCTGAAGAACTACTTGTTAAGATCAGTAAGTGCCTCAAATATTCATTTCAAGTTGGTCATTTTCGTGCTGTTTGTACCTCTTGGAGATCCGCAGTTCCATTATTTCCCCTTCATAAAAGACTCTCCATTGTCCCTAAATACATTGGCAGTAAAAAGCCTCAAAGTAAATGCATGAATAGGTTCGTTTTCCGGCTTGATCTTCAACAACTTCCATCACCATCACCGTCACCCACCAGTTATTTGATAGCTGTGGCGGAACAATTCAACGGAGACGGCCAAAGCCAACTCCACCTATTGAACCCTGTCACTGGAAGTCCTATTCCTATCTCCTCATCACCATCAAACTTGTTGTTTCCAAGAGAGATTAATTTGAACAAATTTCGCGTCTCTATACTGCATAAATCTTCCTTGATGTTTCATCCACACACAAATCGCTATCTTATTGGTAAAGTTGTTTATCTTTCCACTCTCCGACAATCCTCTGACGGACGTATTCCGAAAGCAGCTGCTGTTCTTGGAAGTGGAAAGGTGTCTTTGTTTACAATTAATACAAGAGAGAGAGTTATCTTAAATTATTTGATGGATGGTCTTGTTAGAGACCATAACC</gDNA_template>
            <first_frame> I  T  T  K  L  Q  F  W  *  R  *  K  R  R  R  *  R  S  C  I  L  G  P  Y  G  L  I  F  L  K  N  Y  L  L  R  S  V  S  A  S  N  I  H  F  K  L  V  I  F  V  L  F  V  P  L  G  D  P  Q  F  H  Y  F  P  F  I  K  D  S  P  L  S  L  N  T  L  A  V  K  S  L  K  V  N  A  *  I  G  S  F  S  G  L  I  F  N  N  F  H  H  H  H  R  H  P  P  V  I  *  *  L  W  R  N  N  S  T  E  T  A  K  A  N  S  T  Y  *  T  L  S  L  E  V  L  F  L  S  P  H  H  H  Q  T  C  C  F  Q  E  R  L  I  *  T  N  F  A  S  L  Y  C  I  N  L  P  *  C  F  I  H  T  Q  I  A  I  L  L  V  K  L  F  I  F  P  L  S  D  N  P  L  T  D  V  F  R  K  Q  L  L  F  L  E  V  E  R  C  L  C  L  Q  L  I  Q  E  R  E  L  S  *  I  I  *  W  M  V  L  L  E  T  I  T </first_frame>
            <second_frame>  L  R  L  N  C  S  F  G  E  D  E  R  E  E  D  E  E  A  V  F  L  A  H  M  G  *  S  S  *  R  T  T  C  *  D  Q  *  V  P  Q  I  F  I  S  S  W  S  F  S  C  C  L  Y  L  L  E  I  R  S  S  I  I  S  P  S  *  K  T  L  H  C  P  *  I  H  W  Q  *  K  A  S  K  *  M  H  E  *  V  R  F  P  A  *  S  S  T  T  S  I  T  I  T  V  T  H  Q  L  F  D  S  C  G  G  T  I  Q  R  R  R  P  K  P  T  P  P  I  E  P  C  H  W  K  S  Y  S  Y  L  L  I  T  I  K  L  V  V  S  K  R  D  *  F  E  Q  I  S  R  L  Y  T  A  *  I  F  L  D  V  S  S  T  H  K  S  L  S  Y  W  *  S  C  L  S  F  H  S  P  T  I  L  *  R  T  Y  S  E  S  S  C  C  S  W  K  W  K  G  V  F  V  Y  N  *  Y  K  R  E  S  Y  L  K  L  F  D  G  W  S  C  *  R  P  *   </second_frame>
            <third_frame>   Y  D  *  T  A  V  L  V  K  M  K  E  K  K  M  K  K  L  Y  S  W  P  I  W  A  D  L  P  E  E  L  L  V  K  I  S  K  C  L  K  Y  S  F  Q  V  G  H  F  R  A  V  C  T  S  W  R  S  A  V  P  L  F  P  L  H  K  R  L  S  I  V  P  K  Y  I  G  S  K  K  P  Q  S  K  C  M  N  R  F  V  F  R  L  D  L  Q  Q  L  P  S  P  S  P  S  P  T  S  Y  L  I  A  V  A  E  Q  F  N  G  D  G  Q  S  Q  L  H  L  L  N  P  V  T  G  S  P  I  P  I  S  S  S  P  S  N  L  L  F  P  R  E  I  N  L  N  K  F  R  V  S  I  L  H  K  S  S  L  M  F  H  P  H  T  N  R  Y  L  I  G  K  V  V  Y  L  S  T  L  R  Q  S  S  D  G  R  I  P  K  A  A  A  V  L  G  S  G  K  V  S  L  F  T  I  N  T  R  E  R  V  I  L  N  Y  L  M  D  G  L  V  R  D  H  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99166" stop="98489"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAVLVKMKEKKMKKLYSWPIWADLPEELLVKISKCLKYSFQVGHFRAVCTSWRSAVPLFPLHKRLSIVPKYIGSKKPQSKCMNRFVFRLDLQQLPSPSPSPTSYLIAVAEQFNGDGQSQLHLLNPVTGSPIPISSSPSNLLFPREINLNKFRVSILHKSSLMFHPHTNRYLIGKVVYLSTLRQSSDGRIPKAAAVLGSGKVSLFTINTRERVILNYLMDGLVRDHN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="102224" PGL_stop="103667"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102224" e_stop="102925"/>
            <exon e_start="103001" e_stop="103075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.801" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102224" e_stop="102925" e_length="702"/>
          </exon>
          <intron i_serial="1" don_prob="0.801" acc_prob="0.992">
            <gDNA_intron_boundary i_start="102926" i_stop="103000" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="103001" e_stop="103075" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102224" stop="102925"/>
              <exon start="103001" stop="103075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATCAGTACAGAACCCCAATTCCAAATCTCTCATCTTCATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCGGTAAAGATTTTTCCGATCTCATACTCCTCTTCTCTGCTCCTATTTATTCCAATCATGAATAATTTCTACGTTCGTTTTTGATGCTCGTATTTTTCTTTAGCAGAAAAATTTAGTGAATTCTTTACAGGTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTACGTATGTTTATTTTAAGATTAAACTCTGTGTCAACTCAACAAATTGAAATAGAATGAGTAATTTATTTATTTCCCTTTCTATTGGTTTAATTGTGGGAATCATTATTGAGGGTTTCGTCTGTAACAGGTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAG : GCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAGTGGGACAAAGTTCTGTGTTTGTGT</gDNA_template>
            <first_frame> L  I  S  T  E  P  Q  F  Q  I  S  H  L  H  R  L  T  A  T  V  T  S  V  P  A  V  D  S  P  V  K  I  F  P  I  S  Y  S  S  S  L  L  L  F  I  P  I  M  N  N  F  Y  V  R  F  *  C  S  Y  F  S  L  A  E  K  F  S  E  F  F  T  G  *  V  L  D  G  I  S  *  L  D  A  S  I  S  *  R  A  E  S  M  Y  Q  Q  V  K  N  A  Q  N  L  L  L  A  S  F  Q  F  I  C  L  I  L  L  F  N  P  F  T  R  D  S  R  P  L  H  R  F  G  T  L  Y  V  C  L  F  *  D  *  T  L  C  Q  L  N  K  L  K  *  N  E  *  F  I  Y  F  P  F  Y  W  F  N  C  G  N  H  Y  *  G  F  R  L  *  Q  V  W  F  L  *  L  *  *  K  I  *  R  N  Y  *  E  T  C  S  S  T  *  A  R  Q  *  A  C  K  G  W  F  L  C  *  L  C  S  S  I  S  R  F  R  P  *  D  F  *  K  G  K  S  C  P  S  K  L  E  :  A  F  W  I  E  L  G  V  C  *  S  K  S  S  N  S  K  W  D  K  V  L  C  L  C </first_frame>
            <second_frame>  *  S  V  Q  N  P  N  S  K  S  L  I  F  I  G  S  L  P  L  L  P  Q  C  R  R  W  T  L  R  *  R  F  F  R  S  H  T  P  L  L  C  S  Y  L  F  Q  S  *  I  I  S  T  F  V  F  D  A  R  I  F  L  *  Q  K  N  L  V  N  S  L  Q  V  K  Y  L  M  V  F  L  S  W  T  R  P  S  P  E  E  Q  K  A  C  I  N  K  *  R  M  P  R  T  C  Y  W  L  R  S  N  L  F  V  L  S  C  F  L  I  R  L  P  E  I  L  D  R  Y  I  V  L  G  H  S  T  Y  V  Y  F  K  I  K  L  C  V  N  S  T  N  *  N  R  M  S  N  L  F  I  S  L  S  I  G  L  I  V  G  I  I  I  E  G  F  V  C  N  R  S  G  S  F  N  Y  D  K  R  F  R  G  T  T  E  K  P  A  P  L  L  K  Q  D  S  E  L  A  K  D  G  F  S  V  N  C  A  R  V  L  V  G  S  G  R  E  T  F  E  K  G  K  A  A  L  Q  N  W  R :   H  F  G  L  N  W  A  F  V  D  P  K  A  Q  I  Q  S  G  T  K  F  C  V  C   </second_frame>
            <third_frame>   N  Q  Y  R  T  P  I  P  N  L  S  S  S  S  A  H  C  H  C  Y  L  S  A  G  G  G  L  S  G  K  D  F  S  D  L  I  L  L  F  S  A  P  I  Y  S  N  H  E  *  F  L  R  S  F  L  M  L  V  F  F  F  S  R  K  I  *  *  I  L  Y  R  L  S  T  *  W  Y  F  L  A  G  R  V  H  L  L  K  S  R  K  H  V  S  T  S  K  E  C  P  E  L  V  T  G  F  V  P  I  Y  L  S  Y  L  A  F  *  S  V  Y  Q  R  F  *  T  A  T  S  F  W  D  T  L  R  M  F  I  L  R  L  N  S  V  S  T  Q  Q  I  E  I  E  *  V  I  Y  L  F  P  F  L  L  V  *  L  W  E  S  L  L  R  V  S  S  V  T  G  L  V  P  L  T  M  I  K  D  L  E  E  L  L  R  N  L  L  L  Y  L  S  K  T  V  S  L  Q  R  M  V  S  L  L  I  V  L  E  Y  *  S  V  Q  A  V  R  L  L  K  R  E  K  L  P  F  K  I  G   : G  I  L  D  *  I  G  R  L  L  I  Q  K  L  K  F  K  V  G  Q  S  S  V  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102669" stop="102925"/>
                    <exon start="103001" stop="103073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRMSNLFISLSIGLIVGIIIEGFVCNRSGSFNYDKRFRGTTEKPAPLLKQDSELAKDGFSVNCARVLVGSGRETFEKGKAALQNWRHFGLNWAFVDPKAQIQSGTKFCVC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102263" e_stop="102310"/>
            <exon e_start="102438" e_stop="102622"/>
            <exon e_start="102749" e_stop="102925"/>
            <exon e_start="103001" e_stop="103196"/>
            <exon e_start="103552" e_stop="103667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102263" e_stop="102310" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.909">
            <gDNA_intron_boundary i_start="102311" i_stop="102437" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102438" e_stop="102622" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.982">
            <gDNA_intron_boundary i_start="102623" i_stop="102748" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102749" e_stop="102925" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.801" acc_prob="0.992">
            <gDNA_intron_boundary i_start="102926" i_stop="103000" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103001" e_stop="103196" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.968">
            <gDNA_intron_boundary i_start="103197" i_stop="103551" i_length="355"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="103552" e_stop="103667" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102263" stop="102310"/>
              <exon start="102438" stop="102622"/>
              <exon start="102749" stop="102925"/>
              <exon start="103001" stop="103196"/>
              <exon start="103552" stop="103667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCGGCTCACTGCCACTGTTACCTCAGTGCCGGCGGTGGACTCTCCG : GTTAAGTACTTGATGGTATTTCTTAGCTGGACGCGTCCATCTCCTGAAGAGCAGAAAGCATGTATCAACAAGTAAAGAATGCCCAGAACTTGTTACTGGCTTCGTTCCAATTTATTTGTCTTATCTTGCTTTTTAATCCGTTTACCAGAGATTCTAGACCGCTACATCGTTTTGGGACACTCTAC : GTCTGGTTCCTTTAACTATGATAAAAGATTTAGAGGAACTACTGAGAAACCTGCTCCTCTACTTAAGCAAGACAGTGAGCTTGCAAAGGATGGTTTCTCTGTTAATTGTGCTCGAGTATTAGTCGGTTCAGGCCGTGAGACTTTTGAAAAGGGAAAAGCTGCCCTTCAAAATTGGAG : GCATTTTGGATTGAATTGGGCGTTTGTTGATCCAAAAGCTCAAATTCAAAGTGGGACAAAGTTCTGTGTTTGTGTGAAGGAGTTCTTCCCGTGGCTTATGATGCCTCTACAGGTTGTTTATGTTAGCGAGAACAAGAACTCGAAAAAGGGGGCTTCGTTTAGTTTTGGCAGTGGAACTCTGCAAGGACATTTGCTG : GCTGGTGAAGAACGTTTTTCAATAGCATTGGACGAAAATGATCTAGTTTGGTACGAGATACTTTCCTTCTCGAAGCCTGCACATTTGCTGTCACTCTTTGGATACCCTTATGTTCT</gDNA_template>
            <first_frame> H  R  L  T  A  T  V  T  S  V  P  A  V  D  S  P  :  V  K  Y  L  M  V  F  L  S  W  T  R  P  S  P  E  E  Q  K  A  C  I  N  K  *  R  M  P  R  T  C  Y  W  L  R  S  N  L  F  V  L  S  C  F  L  I  R  L  P  E  I  L  D  R  Y  I  V  L  G  H  S  T :   S  G  S  F  N  Y  D  K  R  F  R  G  T  T  E  K  P  A  P  L  L  K  Q  D  S  E  L  A  K  D  G  F  S  V  N  C  A  R  V  L  V  G  S  G  R  E  T  F  E  K  G  K  A  A  L  Q  N  W  R :   H  F  G  L  N  W  A  F  V  D  P  K  A  Q  I  Q  S  G  T  K  F  C  V  C  V  K  E  F  F  P  W  L  M  M  P  L  Q  V  V  Y  V  S  E  N  K  N  S  K  K  G  A  S  F  S  F  G  S  G  T  L  Q  G  H  L  L  :  A  G  E  E  R  F  S  I  A  L  D  E  N  D  L  V  W  Y  E  I  L  S  F  S  K  P  A  H  L  L  S  L  F  G  Y  P  Y  V   </first_frame>
            <second_frame>  I  G  S  L  P  L  L  P  Q  C  R  R  W  T  L  R :   L  S  T  *  W  Y  F  L  A  G  R  V  H  L  L  K  S  R  K  H  V  S  T  S  K  E  C  P  E  L  V  T  G  F  V  P  I  Y  L  S  Y  L  A  F  *  S  V  Y  Q  R  F  *  T  A  T  S  F  W  D  T  L   : R  L  V  P  L  T  M  I  K  D  L  E  E  L  L  R  N  L  L  L  Y  L  S  K  T  V  S  L  Q  R  M  V  S  L  L  I  V  L  E  Y  *  S  V  Q  A  V  R  L  L  K  R  E  K  L  P  F  K  I  G   : G  I  L  D  *  I  G  R  L  L  I  Q  K  L  K  F  K  V  G  Q  S  S  V  F  V  *  R  S  S  S  R  G  L  *  C  L  Y  R  L  F  M  L  A  R  T  R  T  R  K  R  G  L  R  L  V  L  A  V  E  L  C  K  D  I  C  W :   L  V  K  N  V  F  Q  *  H  W  T  K  M  I  *  F  G  T  R  Y  F  P  S  R  S  L  H  I  C  C  H  S  L  D  T  L  M  F  </second_frame>
            <third_frame>   S  A  H  C  H  C  Y  L  S  A  G  G  G  L  S   : G  *  V  L  D  G  I  S  *  L  D  A  S  I  S  *  R  A  E  S  M  Y  Q  Q  V  K  N  A  Q  N  L  L  L  A  S  F  Q  F  I  C  L  I  L  L  F  N  P  F  T  R  D  S  R  P  L  H  R  F  G  T  L  Y  :  V  W  F  L  *  L  *  *  K  I  *  R  N  Y  *  E  T  C  S  S  T  *  A  R  Q  *  A  C  K  G  W  F  L  C  *  L  C  S  S  I  S  R  F  R  P  *  D  F  *  K  G  K  S  C  P  S  K  L  E  :  A  F  W  I  E  L  G  V  C  *  S  K  S  S  N  S  K  W  D  K  V  L  C  L  C  E  G  V  L  P  V  A  Y  D  A  S  T  G  C  L  C  *  R  E  Q  E  L  E  K  G  G  F  V  *  F  W  Q  W  N  S  A  R  T  F  A   : G  W  *  R  T  F  F  N  S  I  G  R  K  *  S  S  L  V  R  D  T  F  L  L  E  A  C  T  F  A  V  T  L  W  I  P  L  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102513" stop="102622"/>
                    <exon start="102749" stop="102925"/>
                    <exon start="103001" stop="103196"/>
                    <exon start="103552" stop="103665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMPRTCYWLRSNLFVLSCFLIRLPEILDRYIVLGHSTSGSFNYDKRFRGTTEKPAPLLKQDSELAKDGFSVNCARVLVGSGRETFEKGKAALQNWRHFGLNWAFVDPKAQIQSGTKFCVCVKEFFPWLMMPLQVVYVSENKNSKKGASFSFGSGTLQGHLLAGEERFSIALDENDLVWYEILSFSKPAHLLSLFGYPYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="120081" PGL_stop="124417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120081" e_stop="120361"/>
            <exon e_start="120457" e_stop="120571"/>
            <exon e_start="121171" e_stop="121245"/>
            <exon e_start="121363" e_stop="121434"/>
            <exon e_start="121596" e_stop="121733"/>
            <exon e_start="122907" e_stop="122940"/>
            <exon e_start="123461" e_stop="123570"/>
            <exon e_start="124328" e_stop="124417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.977" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.324" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.810" e_score="0.991"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="120081" e_stop="120361" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120362" i_stop="120456" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120457" e_stop="120571" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.641">
            <gDNA_intron_boundary i_start="120572" i_stop="121170" i_length="599"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121171" e_stop="121245" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="121246" i_stop="121362" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121363" e_stop="121434" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121435" i_stop="121595" i_length="161"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="121596" e_stop="121733" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.324">
            <gDNA_intron_boundary i_start="121734" i_stop="122906" i_length="1173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="122907" e_stop="122940" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="122941" i_stop="123460" i_length="520"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="123461" e_stop="123570" e_length="110"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.810">
            <gDNA_intron_boundary i_start="123571" i_stop="124327" i_length="757"/>
          </intron>
          <exon e_serial="8" e_score="0.911">
            <gDNA_exon_boundary e_start="124328" e_stop="124417" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120081" stop="120361"/>
              <exon start="120457" stop="120571"/>
              <exon start="121171" stop="121245"/>
              <exon start="121363" stop="121434"/>
              <exon start="121596" stop="121733"/>
              <exon start="122907" stop="122940"/>
              <exon start="123461" stop="123570"/>
              <exon start="124328" stop="124417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGCAAATTCTGGACCGAACCCAAAGTCTTTCTCTCTCTACATTATCTCTCTAGATTTGTTGTTTTCAAGTTTCAACTCTGCGGTTAGTTCAGACTAAACTGAAGAACACTTGTATACTCGGAGACGGCGAGGAATGTGTATTGAGAAACAAGTGTTTTCTAGTGAATGAATTTTTCGAAGAAGGTGAAATGGGAGCATTATGCGCTGGCCACTCTCGGGACACCTTGGATCGTTTCTCCGACCGTTGTCTCCACGTTTTCCCATGTCTCTCCGATCCCG : CTCGGAGATCCACTTGTTGCTTGAGAATAGCGTTGGTGATGCTGCACTTGATCTATCTGGGCGTTCTATTTGTCTTTGACAAAGATTTGATTCATAAAACTAAAGAAGAGCCATG : GTACACAACTGTCTATTTGATCCTGTTTGCTGCTACACTGGCTCAATACTTCATCACTTCAGGTTCTTCTCCTGG : CTATGTTGTTGATGCAATGAGGGCTGTCAATGAGGCAGATGCATCATGTAATAGGGCATCAATTACCTCAAA : ACAGCCTGCTTCAAGCAAAAACGGCGATGTAGTTATTGCAATCGACCGGAACCAGTTGGGAAGTTATCTTCAAGGCCGTGGTATGATAGCATGGACAAAGCTAGTGATGGATATGTATCCCAGTGGAACATCTCTTAG : AGGTGTGACTTGCAGTTACTGTAATGTTGTGCAG : CCTCCACGCGCTAAACATTGTCATGATTGTGACAAATGTGTTCTTCAATTTGATCATCATTGTGTTTGGCTTGGCACATGCATAGGACAGGGTAATCATTGCGCTTTTTG : GTGGTACATTTGTGGAGAAACAGCCTTATCCCTTTGGACGGGCACGTTATATATTCAATTTTTGAAGTCTGATATATATTCAAAGCCTTG</gDNA_template>
            <first_frame> R  A  N  S  G  P  N  P  K  S  F  S  L  Y  I  I  S  L  D  L  L  F  S  S  F  N  S  A  V  S  S  D  *  T  E  E  H  L  Y  T  R  R  R  R  G  M  C  I  E  K  Q  V  F  S  S  E  *  I  F  R  R  R  *  N  G  S  I  M  R  W  P  L  S  G  H  L  G  S  F  L  R  P  L  S  P  R  F  P  M  S  L  R  S  R :   S  E  I  H  L  L  L  E  N  S  V  G  D  A  A  L  D  L  S  G  R  S  I  C  L  *  Q  R  F  D  S  *  N  *  R  R  A  M  :  V  H  N  C  L  F  D  P  V  C  C  Y  T  G  S  I  L  H  H  F  R  F  F  S  W  :  L  C  C  *  C  N  E  G  C  Q  *  G  R  C  I  M  *  *  G  I  N  Y  L  K  :  T  A  C  F  K  Q  K  R  R  C  S  Y  C  N  R  P  E  P  V  G  K  L  S  S  R  P  W  Y  D  S  M  D  K  A  S  D  G  Y  V  S  Q  W  N  I  S  *  :  R  C  D  L  Q  L  L  *  C  C  A   : A  S  T  R  *  T  L  S  *  L  *  Q  M  C  S  S  I  *  S  S  L  C  L  A  W  H  M  H  R  T  G  *  S  L  R  F  L  :  V  V  H  L  W  R  N  S  L  I  P  L  D  G  H  V  I  Y  S  I  F  E  V  *  Y  I  F  K  A  L </first_frame>
            <second_frame>  G  Q  I  L  D  R  T  Q  S  L  S  L  S  T  L  S  L  *  I  C  C  F  Q  V  S  T  L  R  L  V  Q  T  K  L  K  N  T  C  I  L  G  D  G  E  E  C  V  L  R  N  K  C  F  L  V  N  E  F  F  E  E  G  E  M  G  A  L  C  A  G  H  S  R  D  T  L  D  R  F  S  D  R  C  L  H  V  F  P  C  L  S  D  P   : A  R  R  S  T  C  C  L  R  I  A  L  V  M  L  H  L  I  Y  L  G  V  L  F  V  F  D  K  D  L  I  H  K  T  K  E  E  P  W :   Y  T  T  V  Y  L  I  L  F  A  A  T  L  A  Q  Y  F  I  T  S  G  S  S  P  G :   Y  V  V  D  A  M  R  A  V  N  E  A  D  A  S  C  N  R  A  S  I  T  S  K :   Q  P  A  S  S  K  N  G  D  V  V  I  A  I  D  R  N  Q  L  G  S  Y  L  Q  G  R  G  M  I  A  W  T  K  L  V  M  D  M  Y  P  S  G  T  S  L  R :   G  V  T  C  S  Y  C  N  V  V  Q  :  P  P  R  A  K  H  C  H  D  C  D  K  C  V  L  Q  F  D  H  H  C  V  W  L  G  T  C  I  G  Q  G  N  H  C  A  F  W :   W  Y  I  C  G  E  T  A  L  S  L  W  T  G  T  L  Y  I  Q  F  L  K  S  D  I  Y  S  K  P   </second_frame>
            <third_frame>   G  K  F  W  T  E  P  K  V  F  L  S  L  H  Y  L  S  R  F  V  V  F  K  F  Q  L  C  G  *  F  R  L  N  *  R  T  L  V  Y  S  E  T  A  R  N  V  Y  *  E  T  S  V  F  *  *  M  N  F  S  K  K  V  K  W  E  H  Y  A  L  A  T  L  G  T  P  W  I  V  S  P  T  V  V  S  T  F  S  H  V  S  P  I  P  :  L  G  D  P  L  V  A  *  E  *  R  W  *  C  C  T  *  S  I  W  A  F  Y  L  S  L  T  K  I  *  F  I  K  L  K  K  S  H   : G  T  Q  L  S  I  *  S  C  L  L  L  H  W  L  N  T  S  S  L  Q  V  L  L  L   : A  M  L  L  M  Q  *  G  L  S  M  R  Q  M  H  H  V  I  G  H  Q  L  P  Q   : N  S  L  L  Q  A  K  T  A  M  *  L  L  Q  S  T  G  T  S  W  E  V  I  F  K  A  V  V  *  *  H  G  Q  S  *  *  W  I  C  I  P  V  E  H  L  L   : E  V  *  L  A  V  T  V  M  L  C  S :   L  H  A  L  N  I  V  M  I  V  T  N  V  F  F  N  L  I  I  I  V  F  G  L  A  H  A  *  D  R  V  I  I  A  L  F   : G  G  T  F  V  E  K  Q  P  Y  P  F  G  R  A  R  Y  I  F  N  F  *  S  L  I  Y  I  Q  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120136" stop="120361"/>
                    <exon start="120457" stop="120571"/>
                    <exon start="121171" stop="121245"/>
                    <exon start="121363" stop="121434"/>
                    <exon start="121596" stop="121733"/>
                    <exon start="122907" stop="122940"/>
                    <exon start="123461" stop="123570"/>
                    <exon start="124328" stop="124415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICCFQVSTLRLVQTKLKNTCILGDGEECVLRNKCFLVNEFFEEGEMGALCAGHSRDTLDRFSDRCLHVFPCLSDPARRSTCCLRIALVMLHLIYLGVLFVFDKDLIHKTKEEPWYTTVYLILFAATLAQYFITSGSSPGYVVDAMRAVNEADASCNRASITSKQPASSKNGDVVIAIDRNQLGSYLQGRGMIAWTKLVMDMYPSGTSLRGVTCSYCNVVQPPRAKHCHDCDKCVLQFDHHCVWLGTCIGQGNHCAFWWYICGETALSLWTGTLYIQFLKSDIYSKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="135185" PGL_stop="127835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135185" e_stop="135053"/>
            <exon e_start="134498" e_stop="134293"/>
            <exon e_start="133862" e_stop="133616"/>
            <exon e_start="133513" e_stop="132180"/>
            <exon e_start="132088" e_stop="131771"/>
            <exon e_start="131638" e_stop="131597"/>
            <exon e_start="130964" e_stop="130840"/>
            <exon e_start="130709" e_stop="130562"/>
            <exon e_start="129572" e_stop="129500"/>
            <exon e_start="128980" e_stop="128868"/>
            <exon e_start="128776" e_stop="128657"/>
            <exon e_start="128417" e_stop="128262"/>
            <exon e_start="128175" e_stop="127835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.992" e_score="0.872"/>
          <exon-intron don_prob="0.977" acc_prob="0.705" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.915" e_score="0.999"/>
          <exon-intron don_prob="0.971" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.905" e_score="0.991"/>
          <exon-intron don_prob="0.550" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="135185" e_stop="135053" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.992">
            <gDNA_intron_boundary i_start="135052" i_stop="134499" i_length="554"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134498" e_stop="134293" e_length="206"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.705">
            <gDNA_intron_boundary i_start="134292" i_stop="133863" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133862" e_stop="133616" e_length="247"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.986">
            <gDNA_intron_boundary i_start="133615" i_stop="133514" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="133513" e_stop="132180" e_length="1334"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.915">
            <gDNA_intron_boundary i_start="132179" i_stop="132089" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="132088" e_stop="131771" e_length="318"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.906">
            <gDNA_intron_boundary i_start="131770" i_stop="131639" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131638" e_stop="131597" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.862" acc_prob="0.987">
            <gDNA_intron_boundary i_start="131596" i_stop="130965" i_length="632"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="130964" e_stop="130840" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130839" i_stop="130710" i_length="130"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="130709" e_stop="130562" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="130561" i_stop="129573" i_length="989"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="129572" e_stop="129500" e_length="73"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="1.000">
            <gDNA_intron_boundary i_start="129499" i_stop="128981" i_length="519"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="128980" e_stop="128868" e_length="113"/>
          </exon>
          <intron i_serial="10" don_prob="0.848" acc_prob="0.905">
            <gDNA_intron_boundary i_start="128867" i_stop="128777" i_length="91"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="128776" e_stop="128657" e_length="120"/>
          </exon>
          <intron i_serial="11" don_prob="0.550" acc_prob="0.935">
            <gDNA_intron_boundary i_start="128656" i_stop="128418" i_length="239"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="128417" e_stop="128262" e_length="156"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128261" i_stop="128176" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="128175" e_stop="127835" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135185" stop="135053"/>
              <exon start="134498" stop="134293"/>
              <exon start="133862" stop="133616"/>
              <exon start="133513" stop="132180"/>
              <exon start="132088" stop="131771"/>
              <exon start="131638" stop="131597"/>
              <exon start="130964" stop="130840"/>
              <exon start="130709" stop="130562"/>
              <exon start="129572" stop="129500"/>
              <exon start="128980" stop="128868"/>
              <exon start="128776" stop="128657"/>
              <exon start="128417" stop="128262"/>
              <exon start="128175" stop="127835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGGAGTGGCTCCTTATCTTTCAAGAACCAGAGTTAGCCGTTCTCTTTGCTGTCCGAGGTAGTACTAGATAACACTGGGAATTTACATATGTTTCTCTTCTTCTTCGTTATTGTTCAATAGCTCTATCAG : AAACAGTTCGCACGCTTGGTAGTTAAGTTTTATGATGGCTGCTTGATGCAGCACATTATGATTTCTCAAGCACTTTGTTTGTTGAATTGGAAGTATCATTTGAGGTGCCTTGAGTTGGAGAAGTTGATTCAGTGGATGGTCAATTTCTGGAGATGGTTATTCTCTTGTCTTGTACTGAAATCTCTAGCCTATGGGAGACGTCAAAG : ATACTGCATTCAAGACATTTGAGCTGCAACTCTTCTGTGAAGGGAGATATGTGGACTTCATCTGTTGCTTTATGCAAAGCTAGGCATGATGTCTCCGTGTCAGTACCTTCTAAACAAAGAGGAAAACTTTTCCCAAGGAACTTATGGATTAAATCTCATACAAGGATGCCTTTGGGCAGCATGTTTGGATCCTGGCTTGTAGAAAGGTCTATACCTATCCATCTATTCGTTTCAGATCGCTCTAGAG : ATGGGAATGTTACTGTGAAATGCTTGAACAGCAATTCTTCCATCCTAAAGCAGGTCTTTAGTGATTTTATAGATGAGGATAGTTTTTTCTCAGATGAGATTGATACAACTTCAGACTGTGGCAAAAGTATTTCAACTGAACCTTTGACCATTGAAGAGCCATGGCTATGCGATTCTTCCTTGCTTCTTCATCATTTGGCAGAGTCTGATGCTTCTGGTGATGTCATTTGTGACAACAAGATTGTTGAGGGTCTTGACTGTGAAAATTTAGAATCAGGATTCGTAAATCAGTCCACACTTAGTGAGACTTTATGGTCCAAGTATGAGGTCAATTCTAACGATGCTTCGTCAGGAACCTTGTGCGCAACATATGCCCATGTAGAGGAGCCCTGGCTATTGCAAGCATGTATGTTATCTCCTAGTTTTGATGCTGAGATGGCTCCTGATGACTTTGAAGTTGAACAGTCAGATAATAAGGATGAAGCTCAACCTCCATTTAGCGATCAACTCGAACAGTTAGCTCAACCTTCATCTAGCAATCAACATGAACAAATACCTGAGAAGCTGTTGGATGTTGATCAATGTGATGCTATATCCAAGGAAGACTCTTTCACAACAATTATTCTGATTAACTCTTCGGTTTGTACTGTGCAAAGAATTGCTGTTTTAGAAAATGAGAAACTGGTTGAACTACTGCTGGAACCAGTGAAAAATAACGTGCAGTGCGATAGTGTTTATCTAGGAGTAGTTACAAAATTAGCTCCACACATGGGTGGTGCATTTGTAAATATTGGCACTTCAAGACCCTCCTTTATGGATATAAAGCCCAACAGAGAACCATTTGTTTTCCCTCCATTTTGTCATGATTCAAGGGAAAAGGTAATTAATGGTGCTTCTGTTGACATGCTTGAAGAGAACCTAGGTCTTCCTAGAAATAAATCCACTTTAGAAGAAGTGGATGCGGATGAGATTGATGATGCTGATATAGAGGATGAATCCATGGAATACATGGACAGTGAGTTTGGGGACCATGAAAGTGGTGATGCTTGTGATATTTTAGAAGTCCTTGCAGAAAATTGTAATGGTAGTGTAACTGAGCATGGGCTTGAAACTCATTCAGAGAAATATCCAGAAGAATCCAGTGGAATTGGGTACCGAGGGCAGAATCCAACTATTGAGCGTGCTATGAATGGTAAGAGAATTTCACAAAGAGATGAAAGCAAGTGGGTCCAGGTCCGAAAAGGCACTAAAATAATTGTGCAAGTTGTTAAAGAAGGATTGGGTACGAAGGGCCCAACACTGACTGCTTATCCGAAATTAAGGAGCAGATTCTGG : GTTTTAGTTCCTCGCGGCAACACGATAGGTATTTCAAAGAAGATTGCTGGTGTTGAGCGCACACGTTTAAGGGTCATTGCAAAAACTTTACAGCCTCAAGGATATGGTCTTACAGTAAGGACAGTTGCAGCTGGTCATTCACTAAATGAATTGCAGAAGGACTTGGAAGGGTTGCTTTCAACTTGGAAAAGTATAATTGAGCATGCAAAGTCTGCAGCTCTTGCCGCAGATGAAGGTGTTGATGGAGCAGTTCCTGTCATGCTTCACCAGGCAATGGGCCAAACACTTTCTGTTGTTCAAGATTATTTTAGCGATAAG : GTGAATAGTTTGGTGGTTGATTCTCCAAGGACATATCATGAG : GTTACAAACTATCTTCAAGAAATGGCACCTAATCTTTGTGAAAGAGTTGAGTTGCATGGTACAAGAACTCCCCTGTTTGATGAATACAACATTGAGGAAGAAATAAACAACATTCTCAGCAAAAG : GGTTCCCCTTGATAATGGAGGTTATTTAGTGATCGAACAGACAGAGGCTTTAGTCTCCATCGATGTAAATGGTGGACATTGTGTGCTTGGTCAAGGGACTTCACAAGAGATGGCTATTCTCAATGTTAACCTTGCAGCTGCTAGACAG : ATTGCTAGGGAAATAAGGCTGAGAGACATTGGTGGCATTATTGTGGTGGATTTCATAGATATGTTGGATGATT : CAAATAAGAGATTGGTCTATGAGGAGGTCAAGAAGGCTGTTGAGAGAGATCGATCAACAGTTAAGGTGTCTGAATTGTCCAGACATGGGCTTATGGAGATTACCAGGAAAAGA : GTTCGACCTAGTGTGACATTCATGATCAGTGAACCATGTATGTGCTGCCATGGTACGGGGAGAGTGGAAGCTTTAGCGACTGCATACTCTAAGATTGAACGTGAAATTTGCCGGTTGCTA : TCCACAACGGATCTGAAGGCAGACCCTGAAAACCCCAAGTCTTGGCCCAGATTTATTCTCAGGGTAGATCAGTACATGTCTAACTATTTAACTTCAGGAAAGAGGACAAGGCTAGCAATCTTGAGTAGTTCTCTCAAAGTTTGGCTTCTTCTAAAG : GTTGCTAGAGGTTTTACCAAAGGGACCTTTGAGCTAAAACCTTTAACAGGCGACAAGGAGTACAAGGGTGATGAACGTGAAACATCTATTTCAGTGTTGCGACCAACAGAGGGTGGATTTCACCCCCCTCGGAAAAAAGTCACCATCTTCCCCATCAAAAAGTGGAGTAGTGGAAAGTGATGTTACCTCCATTAAGAATCATCTGTACAGGTCTCAAAAAACAATGCAAATCCACATATGGTTAGCATAAATTTATTAGCCAATTCTTTCTTCCCTCTTGAGTTTTTCTCGTCGGCTTGTAAGAAATAGCTAGTTTTATGAGGAAATCAATTTTGCATAGC</gDNA_template>
            <first_frame> R  K  E  W  L  L  I  F  Q  E  P  E  L  A  V  L  F  A  V  R  G  S  T  R  *  H  W  E  F  T  Y  V  S  L  L  L  R  Y  C  S  I  A  L  S   : E  T  V  R  T  L  G  S  *  V  L  *  W  L  L  D  A  A  H  Y  D  F  S  S  T  L  F  V  E  L  E  V  S  F  E  V  P  *  V  G  E  V  D  S  V  D  G  Q  F  L  E  M  V  I  L  L  S  C  T  E  I  S  S  L  W  E  T  S  K  :  I  L  H  S  R  H  L  S  C  N  S  S  V  K  G  D  M  W  T  S  S  V  A  L  C  K  A  R  H  D  V  S  V  S  V  P  S  K  Q  R  G  K  L  F  P  R  N  L  W  I  K  S  H  T  R  M  P  L  G  S  M  F  G  S  W  L  V  E  R  S  I  P  I  H  L  F  V  S  D  R  S  R   : D  G  N  V  T  V  K  C  L  N  S  N  S  S  I  L  K  Q  V  F  S  D  F  I  D  E  D  S  F  F  S  D  E  I  D  T  T  S  D  C  G  K  S  I  S  T  E  P  L  T  I  E  E  P  W  L  C  D  S  S  L  L  L  H  H  L  A  E  S  D  A  S  G  D  V  I  C  D  N  K  I  V  E  G  L  D  C  E  N  L  E  S  G  F  V  N  Q  S  T  L  S  E  T  L  W  S  K  Y  E  V  N  S  N  D  A  S  S  G  T  L  C  A  T  Y  A  H  V  E  E  P  W  L  L  Q  A  C  M  L  S  P  S  F  D  A  E  M  A  P  D  D  F  E  V  E  Q  S  D  N  K  D  E  A  Q  P  P  F  S  D  Q  L  E  Q  L  A  Q  P  S  S  S  N  Q  H  E  Q  I  P  E  K  L  L  D  V  D  Q  C  D  A  I  S  K  E  D  S  F  T  T  I  I  L  I  N  S  S  V  C  T  V  Q  R  I  A  V  L  E  N  E  K  L  V  E  L  L  L  E  P  V  K  N  N  V  Q  C  D  S  V  Y  L  G  V  V  T  K  L  A  P  H  M  G  G  A  F  V  N  I  G  T  S  R  P  S  F  M  D  I  K  P  N  R  E  P  F  V  F  P  P  F  C  H  D  S  R  E  K  V  I  N  G  A  S  V  D  M  L  E  E  N  L  G  L  P  R  N  K  S  T  L  E  E  V  D  A  D  E  I  D  D  A  D  I  E  D  E  S  M  E  Y  M  D  S  E  F  G  D  H  E  S  G  D  A  C  D  I  L  E  V  L  A  E  N  C  N  G  S  V  T  E  H  G  L  E  T  H  S  E  K  Y  P  E  E  S  S  G  I  G  Y  R  G  Q  N  P  T  I  E  R  A  M  N  G  K  R  I  S  Q  R  D  E  S  K  W  V  Q  V  R  K  G  T  K  I  I  V  Q  V  V  K  E  G  L  G  T  K  G  P  T  L  T  A  Y  P  K  L  R  S  R  F  W  :  V  L  V  P  R  G  N  T  I  G  I  S  K  K  I  A  G  V  E  R  T  R  L  R  V  I  A  K  T  L  Q  P  Q  G  Y  G  L  T  V  R  T  V  A  A  G  H  S  L  N  E  L  Q  K  D  L  E  G  L  L  S  T  W  K  S  I  I  E  H  A  K  S  A  A  L  A  A  D  E  G  V  D  G  A  V  P  V  M  L  H  Q  A  M  G  Q  T  L  S  V  V  Q  D  Y  F  S  D  K  :  V  N  S  L  V  V  D  S  P  R  T  Y  H  E  :  V  T  N  Y  L  Q  E  M  A  P  N  L  C  E  R  V  E  L  H  G  T  R  T  P  L  F  D  E  Y  N  I  E  E  E  I  N  N  I  L  S  K  R :   V  P  L  D  N  G  G  Y  L  V  I  E  Q  T  E  A  L  V  S  I  D  V  N  G  G  H  C  V  L  G  Q  G  T  S  Q  E  M  A  I  L  N  V  N  L  A  A  A  R  Q  :  I  A  R  E  I  R  L  R  D  I  G  G  I  I  V  V  D  F  I  D  M  L  D  D   : S  N  K  R  L  V  Y  E  E  V  K  K  A  V  E  R  D  R  S  T  V  K  V  S  E  L  S  R  H  G  L  M  E  I  T  R  K  R  :  V  R  P  S  V  T  F  M  I  S  E  P  C  M  C  C  H  G  T  G  R  V  E  A  L  A  T  A  Y  S  K  I  E  R  E  I  C  R  L  L  :  S  T  T  D  L  K  A  D  P  E  N  P  K  S  W  P  R  F  I  L  R  V  D  Q  Y  M  S  N  Y  L  T  S  G  K  R  T  R  L  A  I  L  S  S  S  L  K  V  W  L  L  L  K  :  V  A  R  G  F  T  K  G  T  F  E  L  K  P  L  T  G  D  K  E  Y  K  G  D  E  R  E  T  S  I  S  V  L  R  P  T  E  G  G  F  H  P  P  R  K  K  V  T  I  F  P  I  K  K  W  S  S  G  K  *  C  Y  L  H  *  E  S  S  V  Q  V  S  K  N  N  A  N  P  H  M  V  S  I  N  L  L  A  N  S  F  F  P  L  E  F  F  S  S  A  C  K  K  *  L  V  L  *  G  N  Q  F  C  I   </first_frame>
            <second_frame>  G  R  S  G  S  L  S  F  K  N  Q  S  *  P  F  S  L  L  S  E  V  V  L  D  N  T  G  N  L  H  M  F  L  F  F  F  V  I  V  Q  *  L  Y  Q  :  K  Q  F  A  R  L  V  V  K  F  Y  D  G  C  L  M  Q  H  I  M  I  S  Q  A  L  C  L  L  N  W  K  Y  H  L  R  C  L  E  L  E  K  L  I  Q  W  M  V  N  F  W  R  W  L  F  S  C  L  V  L  K  S  L  A  Y  G  R  R  Q  R :   Y  C  I  Q  D  I  *  A  A  T  L  L  *  R  E  I  C  G  L  H  L  L  L  Y  A  K  L  G  M  M  S  P  C  Q  Y  L  L  N  K  E  E  N  F  S  Q  G  T  Y  G  L  N  L  I  Q  G  C  L  W  A  A  C  L  D  P  G  L  *  K  G  L  Y  L  S  I  Y  S  F  Q  I  A  L  E  :  M  G  M  L  L  *  N  A  *  T  A  I  L  P  S  *  S  R  S  L  V  I  L  *  M  R  I  V  F  S  Q  M  R  L  I  Q  L  Q  T  V  A  K  V  F  Q  L  N  L  *  P  L  K  S  H  G  Y  A  I  L  P  C  F  F  I  I  W  Q  S  L  M  L  L  V  M  S  F  V  T  T  R  L  L  R  V  L  T  V  K  I  *  N  Q  D  S  *  I  S  P  H  L  V  R  L  Y  G  P  S  M  R  S  I  L  T  M  L  R  Q  E  P  C  A  Q  H  M  P  M  *  R  S  P  G  Y  C  K  H  V  C  Y  L  L  V  L  M  L  R  W  L  L  M  T  L  K  L  N  S  Q  I  I  R  M  K  L  N  L  H  L  A  I  N  S  N  S  *  L  N  L  H  L  A  I  N  M  N  K  Y  L  R  S  C  W  M  L  I  N  V  M  L  Y  P  R  K  T  L  S  Q  Q  L  F  *  L  T  L  R  F  V  L  C  K  E  L  L  F  *  K  M  R  N  W  L  N  Y  C  W  N  Q  *  K  I  T  C  S  A  I  V  F  I  *  E  *  L  Q  N  *  L  H  T  W  V  V  H  L  *  I  L  A  L  Q  D  P  P  L  W  I  *  S  P  T  E  N  H  L  F  S  L  H  F  V  M  I  Q  G  K  R  *  L  M  V  L  L  L  T  C  L  K  R  T  *  V  F  L  E  I  N  P  L  *  K  K  W  M  R  M  R  L  M  M  L  I  *  R  M  N  P  W  N  T  W  T  V  S  L  G  T  M  K  V  V  M  L  V  I  F  *  K  S  L  Q  K  I  V  M  V  V  *  L  S  M  G  L  K  L  I  Q  R  N  I  Q  K  N  P  V  E  L  G  T  E  G  R  I  Q  L  L  S  V  L  *  M  V  R  E  F  H  K  E  M  K  A  S  G  S  R  S  E  K  A  L  K  *  L  C  K  L  L  K  K  D  W  V  R  R  A  Q  H  *  L  L  I  R  N  *  G  A  D  S  G :   F  *  F  L  A  A  T  R  *  V  F  Q  R  R  L  L  V  L  S  A  H  V  *  G  S  L  Q  K  L  Y  S  L  K  D  M  V  L  Q  *  G  Q  L  Q  L  V  I  H  *  M  N  C  R  R  T  W  K  G  C  F  Q  L  G  K  V  *  L  S  M  Q  S  L  Q  L  L  P  Q  M  K  V  L  M  E  Q  F  L  S  C  F  T  R  Q  W  A  K  H  F  L  L  F  K  I  I  L  A  I  R :   *  I  V  W  W  L  I  L  Q  G  H  I  M  R :   L  Q  T  I  F  K  K  W  H  L  I  F  V  K  E  L  S  C  M  V  Q  E  L  P  C  L  M  N  T  T  L  R  K  K  *  T  T  F  S  A  K   : G  F  P  L  I  M  E  V  I  *  *  S  N  R  Q  R  L  *  S  P  S  M  *  M  V  D  I  V  C  L  V  K  G  L  H  K  R  W  L  F  S  M  L  T  L  Q  L  L  D  R :   L  L  G  K  *  G  *  E  T  L  V  A  L  L  W  W  I  S  *  I  C  W  M  I  :  Q  I  R  D  W  S  M  R  R  S  R  R  L  L  R  E  I  D  Q  Q  L  R  C  L  N  C  P  D  M  G  L  W  R  L  P  G  K  E :   F  D  L  V  *  H  S  *  S  V  N  H  V  C  A  A  M  V  R  G  E  W  K  L  *  R  L  H  T  L  R  L  N  V  K  F  A  G  C  Y :   P  Q  R  I  *  R  Q  T  L  K  T  P  S  L  G  P  D  L  F  S  G  *  I  S  T  C  L  T  I  *  L  Q  E  R  G  Q  G  *  Q  S  *  V  V  L  S  K  F  G  F  F  *  R :   L  L  E  V  L  P  K  G  P  L  S  *  N  L  *  Q  A  T  R  S  T  R  V  M  N  V  K  H  L  F  Q  C  C  D  Q  Q  R  V  D  F  T  P  L  G  K  K  S  P  S  S  P  S  K  S  G  V  V  E  S  D  V  T  S  I  K  N  H  L  Y  R  S  Q  K  T  M  Q  I  H  I  W  L  A  *  I  Y  *  P  I  L  S  S  L  L  S  F  S  R  R  L  V  R  N  S  *  F  Y  E  E  I  N  F  A  *  </second_frame>
            <third_frame>   E  G  V  A  P  Y  L  S  R  T  R  V  S  R  S  L  C  C  P  R  *  Y  *  I  T  L  G  I  Y  I  C  F  S  S  S  S  L  L  F  N  S  S  I  R :   N  S  S  H  A  W  *  L  S  F  M  M  A  A  *  C  S  T  L  *  F  L  K  H  F  V  C  *  I  G  S  I  I  *  G  A  L  S  W  R  S  *  F  S  G  W  S  I  S  G  D  G  Y  S  L  V  L  Y  *  N  L  *  P  M  G  D  V  K   : D  T  A  F  K  T  F  E  L  Q  L  F  C  E  G  R  Y  V  D  F  I  C  C  F  M  Q  S  *  A  *  C  L  R  V  S  T  F  *  T  K  R  K  T  F  P  K  E  L  M  D  *  I  S  Y  K  D  A  F  G  Q  H  V  W  I  L  A  C  R  K  V  Y  T  Y  P  S  I  R  F  R  S  L  *  R :   W  E  C  Y  C  E  M  L  E  Q  Q  F  F  H  P  K  A  G  L  *  *  F  Y  R  *  G  *  F  F  L  R  *  D  *  Y  N  F  R  L  W  Q  K  Y  F  N  *  T  F  D  H  *  R  A  M  A  M  R  F  F  L  A  S  S  S  F  G  R  V  *  C  F  W  *  C  H  L  *  Q  Q  D  C  *  G  S  *  L  *  K  F  R  I  R  I  R  K  S  V  H  T  *  *  D  F  M  V  Q  V  *  G  Q  F  *  R  C  F  V  R  N  L  V  R  N  I  C  P  C  R  G  A  L  A  I  A  S  M  Y  V  I  S  *  F  *  C  *  D  G  S  *  *  L  *  S  *  T  V  R  *  *  G  *  S  S  T  S  I  *  R  S  T  R  T  V  S  S  T  F  I  *  Q  S  T  *  T  N  T  *  E  A  V  G  C  *  S  M  *  C  Y  I  Q  G  R  L  F  H  N  N  Y  S  D  *  L  F  G  L  Y  C  A  K  N  C  C  F  R  K  *  E  T  G  *  T  T  A  G  T  S  E  K  *  R  A  V  R  *  C  L  S  R  S  S  Y  K  I  S  S  T  H  G  W  C  I  C  K  Y  W  H  F  K  T  L  L  Y  G  Y  K  A  Q  Q  R  T  I  C  F  P  S  I  L  S  *  F  K  G  K  G  N  *  W  C  F  C  *  H  A  *  R  E  P  R  S  S  *  K  *  I  H  F  R  R  S  G  C  G  *  D  *  *  C  *  Y  R  G  *  I  H  G  I  H  G  Q  *  V  W  G  P  *  K  W  *  C  L  *  Y  F  R  S  P  C  R  K  L  *  W  *  C  N  *  A  W  A  *  N  S  F  R  E  I  S  R  R  I  Q  W  N  W  V  P  R  A  E  S  N  Y  *  A  C  Y  E  W  *  E  N  F  T  K  R  *  K  Q  V  G  P  G  P  K  R  H  *  N  N  C  A  S  C  *  R  R  I  G  Y  E  G  P  N  T  D  C  L  S  E  I  K  E  Q  I  L   : G  F  S  S  S  R  Q  H  D  R  Y  F  K  E  D  C  W  C  *  A  H  T  F  K  G  H  C  K  N  F  T  A  S  R  I  W  S  Y  S  K  D  S  C  S  W  S  F  T  K  *  I  A  E  G  L  G  R  V  A  F  N  L  E  K  Y  N  *  A  C  K  V  C  S  S  C  R  R  *  R  C  *  W  S  S  S  C  H  A  S  P  G  N  G  P  N  T  F  C  C  S  R  L  F  *  R  *   : G  E  *  F  G  G  *  F  S  K  D  I  S  *   : G  Y  K  L  S  S  R  N  G  T  *  S  L  *  K  S  *  V  A  W  Y  K  N  S  P  V  *  *  I  Q  H  *  G  R  N  K  Q  H  S  Q  Q  K  :  G  S  P  *  *  W  R  L  F  S  D  R  T  D  R  G  F  S  L  H  R  C  K  W  W  T  L  C  A  W  S  R  D  F  T  R  D  G  Y  S  Q  C  *  P  C  S  C  *  T   : D  C  *  G  N  K  A  E  R  H  W  W  H  Y  C  G  G  F  H  R  Y  V  G  *  F :   K  *  E  I  G  L  *  G  G  Q  E  G  C  *  E  R  S  I  N  S  *  G  V  *  I  V  Q  T  W  A  Y  G  D  Y  Q  E  K   : S  S  T  *  C  D  I  H  D  Q  *  T  M  Y  V  L  P  W  Y  G  E  S  G  S  F  S  D  C  I  L  *  D  *  T  *  N  L  P  V  A   : I  H  N  G  S  E  G  R  P  *  K  P  Q  V  L  A  Q  I  Y  S  Q  G  R  S  V  H  V  *  L  F  N  F  R  K  E  D  K  A  S  N  L  E  *  F  S  Q  S  L  A  S  S  K   : G  C  *  R  F  Y  Q  R  D  L  *  A  K  T  F  N  R  R  Q  G  V  Q  G  *  *  T  *  N  I  Y  F  S  V  A  T  N  R  G  W  I  S  P  P  S  E  K  S  H  H  L  P  H  Q  K  V  E  *  W  K  V  M  L  P  P  L  R  I  I  C  T  G  L  K  K  Q  C  K  S  T  Y  G  *  H  K  F  I  S  Q  F  F  L  P  S  *  V  F  L  V  G  L  *  E  I  A  S  F  M  R  K  S  I  L  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134385" stop="134293"/>
                    <exon start="133862" stop="133616"/>
                    <exon start="133513" stop="132180"/>
                    <exon start="132088" stop="131771"/>
                    <exon start="131638" stop="131597"/>
                    <exon start="130964" stop="130840"/>
                    <exon start="130709" stop="130562"/>
                    <exon start="129572" stop="129500"/>
                    <exon start="128980" stop="128868"/>
                    <exon start="128776" stop="128657"/>
                    <exon start="128417" stop="128262"/>
                    <exon start="128175" stop="127996"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2946</number_coding_nucleotides>
                  <number_encoded_amino_acids>982</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEVDSVDGQFLEMVILLSCTEISSLWETSKILHSRHLSCNSSVKGDMWTSSVALCKARHDVSVSVPSKQRGKLFPRNLWIKSHTRMPLGSMFGSWLVERSIPIHLFVSDRSRDGNVTVKCLNSNSSILKQVFSDFIDEDSFFSDEIDTTSDCGKSISTEPLTIEEPWLCDSSLLLHHLAESDASGDVICDNKIVEGLDCENLESGFVNQSTLSETLWSKYEVNSNDASSGTLCATYAHVEEPWLLQACMLSPSFDAEMAPDDFEVEQSDNKDEAQPPFSDQLEQLAQPSSSNQHEQIPEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQCDSVYLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFVFPPFCHDSREKVINGASVDMLEENLGLPRNKSTLEEVDADEIDDADIEDESMEYMDSEFGDHESGDACDILEVLAENCNGSVTEHGLETHSEKYPEESSGIGYRGQNPTIERAMNGKRISQRDESKWVQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLVPRGNTIGISKKIAGVERTRLRVIAKTLQPQGYGLTVRTVAAGHSLNELQKDLEGLLSTWKSIIEHAKSAALAADEGVDGAVPVMLHQAMGQTLSVVQDYFSDKVNSLVVDSPRTYHEVTNYLQEMAPNLCERVELHGTRTPLFDEYNIEEEINNILSKRVPLDNGGYLVIEQTEALVSIDVNGGHCVLGQGTSQEMAILNVNLAAARQIAREIRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSTVKVSELSRHGLMEITRKRVRPSVTFMISEPCMCCHGTGRVEALATAYSKIEREICRLLSTTDLKADPENPKSWPRFILRVDQYMSNYLTSGKRTRLAILSSSLKVWLLLKVARGFTKGTFELKPLTGDKEYKGDERETSISVLRPTEGGFHPPRKKVTIFPIKKWSSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="136785" PGL_stop="136240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136785" e_stop="136240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="136785" e_stop="136240" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136785" stop="136240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCAAATCGTAATGTTCAGTATGATGATTCAGACTGTGATGAGGAAATCGAGATGGAAGATCCGCCGAGTGGGACATATAAACCCAGCCCACCAACTGATATTGATGGTGGGAAGTTCTACAGAAGGCACAGCTACAATGTTCCATCAGTACATTCAGGTATCAAGTTTGATGAATCAGATGGTGAAGAAGAGATGGGAACTCACGAATTCAGTAGAGGAACCAATCGAGCCCCTAACCGTCCTGCACCTCATGTGCCTCGGGTTCATCCCAATTTACCTGACTACGACAAACTTACTGCTCGCTTCGAGTCTCTCAAGTCCCAGAAATCTCGTCGCACCTAGATTATCCAAGGTTCATGAAGTCAGATACATTTTGTGCCAGTCCAATATTATTGTATACAGTACAGAAACCAAATGATATGTTAAAAATGGTTCATTTATAGTAGGTCATTTCGTGGAGTTCACTTATTGCCTTTGTGTTGACTTTACAAATTTGGGTGTAATAAATCTTGGATATTCCTTTTACAAGGTTGTTCAGTGGATC</gDNA_template>
            <first_frame> P  Q  I  V  M  F  S  M  M  I  Q  T  V  M  R  K  S  R  W  K  I  R  R  V  G  H  I  N  P  A  H  Q  L  I  L  M  V  G  S  S  T  E  G  T  A  T  M  F  H  Q  Y  I  Q  V  S  S  L  M  N  Q  M  V  K  K  R  W  E  L  T  N  S  V  E  E  P  I  E  P  L  T  V  L  H  L  M  C  L  G  F  I  P  I  Y  L  T  T  T  N  L  L  L  A  S  S  L  S  S  P  R  N  L  V  A  P  R  L  S  K  V  H  E  V  R  Y  I  L  C  Q  S  N  I  I  V  Y  S  T  E  T  K  *  Y  V  K  N  G  S  F  I  V  G  H  F  V  E  F  T  Y  C  L  C  V  D  F  T  N  L  G  V  I  N  L  G  Y  S  F  Y  K  V  V  Q  W  I </first_frame>
            <second_frame>  L  K  S  *  C  S  V  *  *  F  R  L  *  *  G  N  R  D  G  R  S  A  E  W  D  I  *  T  Q  P  T  N  *  Y  *  W  W  E  V  L  Q  K  A  Q  L  Q  C  S  I  S  T  F  R  Y  Q  V  *  *  I  R  W  *  R  R  D  G  N  S  R  I  Q  *  R  N  Q  S  S  P  *  P  S  C  T  S  C  A  S  G  S  S  Q  F  T  *  L  R  Q  T  Y  C  S  L  R  V  S  Q  V  P  E  I  S  S  H  L  D  Y  P  R  F  M  K  S  D  T  F  C  A  S  P  I  L  L  Y  T  V  Q  K  P  N  D  M  L  K  M  V  H  L  *  *  V  I  S  W  S  S  L  I  A  F  V  L  T  L  Q  I  W  V  *  *  I  L  D  I  P  F  T  R  L  F  S  G   </second_frame>
            <third_frame>   S  N  R  N  V  Q  Y  D  D  S  D  C  D  E  E  I  E  M  E  D  P  P  S  G  T  Y  K  P  S  P  P  T  D  I  D  G  G  K  F  Y  R  R  H  S  Y  N  V  P  S  V  H  S  G  I  K  F  D  E  S  D  G  E  E  E  M  G  T  H  E  F  S  R  G  T  N  R  A  P  N  R  P  A  P  H  V  P  R  V  H  P  N  L  P  D  Y  D  K  L  T  A  R  F  E  S  L  K  S  Q  K  S  R  R  T  *  I  I  Q  G  S  *  S  Q  I  H  F  V  P  V  Q  Y  Y  C  I  Q  Y  R  N  Q  M  I  C  *  K  W  F  I  Y  S  R  S  F  R  G  V  H  L  L  P  L  C  *  L  Y  K  F  G  C  N  K  S  W  I  F  L  L  Q  G  C  S  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136785" stop="136366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQIVMFSMMIQTVMRKSRWKIRRVGHINPAHQLILMVGSSTEGTATMFHQYIQVSSLMNQMVKKRWELTNSVEEPIEPLTVLHLMCLGFIPIYLTTTNLLLASSLSSPRNLVAPRLSKVHEVRYILCQSNIIVYSTETK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136783" stop="136442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNRNVQYDDSDCDEEIEMEDPPSGTYKPSPPTDIDGGKFYRRHSYNVPSVHSGIKFDESDGEEEMGTHEFSRGTNRAPNRPAPHVPRVHPNLPDYDKLTARFESLKSQKSRRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="139556" PGL_stop="137300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139556" e_stop="139359"/>
            <exon e_start="139280" e_stop="139148"/>
            <exon e_start="138086" e_stop="137983"/>
            <exon e_start="137894" e_stop="137723"/>
            <exon e_start="137611" e_stop="137471"/>
            <exon e_start="137380" e_stop="137300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.646" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.535" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="139556" e_stop="139359" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139358" i_stop="139281" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="139280" e_stop="139148" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="139147" i_stop="138087" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138086" e_stop="137983" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.646" acc_prob="0.980">
            <gDNA_intron_boundary i_start="137982" i_stop="137895" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137894" e_stop="137723" e_length="172"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.535">
            <gDNA_intron_boundary i_start="137722" i_stop="137612" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="137611" e_stop="137471" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.979">
            <gDNA_intron_boundary i_start="137470" i_stop="137381" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.963">
            <gDNA_exon_boundary e_start="137380" e_stop="137300" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139556" stop="139359"/>
              <exon start="139280" stop="139148"/>
              <exon start="138086" stop="137983"/>
              <exon start="137894" stop="137723"/>
              <exon start="137611" stop="137471"/>
              <exon start="137380" stop="137300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAACGAAACGACCGTTACACATACAACTCTGTTCTCTTCTTCACTACCATTCTCACACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATG : CAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGG : GTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAA : GCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACG : CTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAATAGCCAAAGAATACCAGGTTGAATGGGACACCGCAGATTCAGAGATGGAGCTTCTCAAGCCACCAGAAGAGCGTATA : GAAGGACCAAATGGCTTTGTAAGTGCCACTAGCTTACCCCTGAAGCCAGCCTCAAAGCAACCTGCTGAGCCTAACAACCTC</gDNA_template>
            <first_frame> P  N  E  T  T  V  T  H  T  T  L  F  S  S  S  L  P  F  S  H  T  L  F  S  S  L  H  S  L  S  L  F  *  Q  E  N  D  S  S  K  R  C  H  Q  A  L  Q  E  G  H  E  D  G  S  F  S  L  L  Q  N  L  Q  F  F  *  M  :  Q  D  N  G  K  N  D  G  G  E  N  K  I  A  E  K  Q  E  G  G  G  C  A  A  N  E  E  R  H  C  Y  A  S  *  I  P  S  G  C  H  C  S  Y  *   : G  R  T  C  N  K  R  T  K  Y  I  T  S  K  *  D  P  R  A  L  L  *  T  Y  C  G  *  V  N  N  Y  C  K  A  K  :  A  M  S  S  *  F  E  R  G  D  I  K  F  D  F  R  C  P  K  V  L  R  Y  S  R  I  D  G  N  Q  R  C  F  *  E  E  I  W  K  R  F  C  F  S  S  D  *  P  A  T  Q  C  W  C  K  P  D   : A  H  *  K  A  L  C  E  N  S  K  W  *  S  Q  T  K  N  H  E  R  N  S  Q  R  I  P  G  *  M  G  H  R  R  F  R  D  G  A  S  Q  A  T  R  R  A  Y   : R  R  T  K  W  L  C  K  C  H  *  L  T  P  E  A  S  L  K  A  T  C  *  A  *  Q  P  </first_frame>
            <second_frame>  Q  T  K  R  P  L  H  I  Q  L  C  S  L  L  H  Y  H  S  H  T  H  S  S  H  R  F  T  L  S  L  S  F  N  K  K  M  T  V  A  N  A  A  T  K  H  C  K  K  A  M  K  M  G  L  S  L  F  C  R  T  F  N  S  S  K  C :   K  T  M  A  K  M  T  V  A  R  I  K  L  L  R  N  K  R  E  V  V  V  R  Q  M  R  R  D  I  A  M  L  L  E  S  H  Q  D  A  T  A  R  I  R  :  V  E  H  V  I  R  E  Q  N  I  L  Q  A  N  E  I  L  E  L  F  C  E  L  I  V  A  R  L  T  I  I  A  K  Q  K :   Q  C  P  A  D  L  K  E  G  I  S  S  L  I  F  A  A  P  R  C  S  D  I  P  E  L  M  G  I  K  D  V  F  E  K  K  Y  G  K  D  F  V  S  A  A  T  D  L  R  P  N  A  G  V  N  R  T  :  L  I  E  K  L  S  V  K  T  P  S  G  E  V  K  L  K  I  M  K  E  I  A  K  E  Y  Q  V  E  W  D  T  A  D  S  E  M  E  L  L  K  P  P  E  E  R  I  :  E  G  P  N  G  F  V  S  A  T  S  L  P  L  K  P  A  S  K  Q  P  A  E  P  N  N  L </second_frame>
            <third_frame>   K  R  N  D  R  Y  T  Y  N  S  V  L  F  F  T  T  I  L  T  H  T  L  L  I  A  S  L  S  L  S  L  L  T  R  K  *  Q  *  Q  T  L  P  P  S  T  A  R  R  P  *  R  W  V  F  L  S  S  A  E  P  S  I  L  L  N   : A  R  Q  W  Q  K  *  R  W  R  E  *  N  C  *  E  T  R  G  R  W  L  C  G  K  *  G  E  T  L  L  C  F  L  N  P  I  R  M  P  L  L  V  L  G :   S  N  M  *  *  E  N  K  I  Y  Y  K  Q  M  R  S  S  S  S  S  V  N  L  L  W  L  G  *  Q  L  L  Q  S  K   : S  N  V  Q  L  I  *  K  R  G  Y  Q  V  *  F  S  L  P  Q  G  A  Q  I  F  Q  N  *  W  E  S  K  M  F  L  R  R  N  M  E  K  I  L  F  Q  Q  R  L  T  C  D  P  M  L  V  *  T  G  R :   S  L  K  S  S  L  *  K  L  Q  V  V  K  S  N  *  K  S  *  K  K  *  P  K  N  T  R  L  N  G  T  P  Q  I  Q  R  W  S  F  S  S  H  Q  K  S  V  * :   K  D  Q  M  A  L  *  V  P  L  A  Y  P  *  S  Q  P  Q  S  N  L  L  S  L  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139555" stop="139359"/>
                    <exon start="139280" stop="139148"/>
                    <exon start="138086" stop="137983"/>
                    <exon start="137894" stop="137723"/>
                    <exon start="137611" stop="137471"/>
                    <exon start="137380" stop="137300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTKRPLHIQLCSLLHYHSHTHSSHRFTLSLSFNKKMTVANAATKHCKKAMKMGLSLFCRTFNSSKCKTMAKMTVARIKLLRNKREVVVRQMRRDIAMLLESHQDATARIRVEHVIREQNILQANEILELFCELIVARLTIIAKQKQCPADLKEGISSLIFAAPRCSDIPELMGIKDVFEKKYGKDFVSAATDLRPNAGVNRTLIEKLSVKTPSGEVKLKIMKEIAKEYQVEWDTADSEMELLKPPEERIEGPNGFVSATSLPLKPASKQPAEPNNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="139498" e_stop="139359"/>
            <exon e_start="139280" e_stop="139148"/>
            <exon e_start="138086" e_stop="137723"/>
            <exon e_start="137611" e_stop="137547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.535" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="139498" e_stop="139359" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139358" i_stop="139281" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="139280" e_stop="139148" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="139147" i_stop="138087" i_length="1061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138086" e_stop="137723" e_length="364"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.535">
            <gDNA_intron_boundary i_start="137722" i_stop="137612" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137611" e_stop="137547" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139498" stop="139359"/>
              <exon start="139280" stop="139148"/>
              <exon start="138086" stop="137723"/>
              <exon start="137611" stop="137547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACACTCTTCTCATCGCTTCACTCTCTCTCTCTCTTTTAACAAGAAAATGACAGTAGCAAACGCTGCCACCAAGCACTGCAAGAAGGCCATGAAGATGGGTCTTTCTCTCTTCTGCAGAACCTTCAATTCTTCTAAATG : CAAGACAATGGCAAAAATGACGGTGGCGAGAATAAAATTGCTGAGAAACAAGAGGGAGGTGGTTGTGCGGCAAATGAGGAGAGACATTGCTATGCTTCTTGAATCCCATCAGGATGCCACTGCTCGTATTAGG : GTCGAACATGTAATAAGAGAACAAAATATATTACAAGCAAATGAGATCCTCGAGCTCTTCTGTGAACTTATTGTGGCTAGGTTAACAATTATTGCAAAGCAAAAGTAAGATGTCTCAAGCTATTAATTTTTTTTAAGGTTAGAAGACAAAGCTCACAAATAACCTTGATTTCTATTTATCTGCCTGTTGCAGGCAATGTCCAGCTGATTTGAAAGAGGGGATATCAAGTTTGATTTTCGCTGCCCCAAGGTGCTCAGATATTCCAGAATTGATGGGAATCAAAGATGTTTTTGAGAAGAAATATGGAAAAGATTTTGTTTCAGCAGCGACTGACCTGCGACCCAATGCTGGTGTAAACCGGACG : CTCATTGAAAAGCTCTCTGTGAAAACTCCAAGTGGTGAAGTCAAACTAAAAATCATGAAAGAAAT</gDNA_template>
            <first_frame> T  H  S  S  H  R  F  T  L  S  L  S  F  N  K  K  M  T  V  A  N  A  A  T  K  H  C  K  K  A  M  K  M  G  L  S  L  F  C  R  T  F  N  S  S  K  C :   K  T  M  A  K  M  T  V  A  R  I  K  L  L  R  N  K  R  E  V  V  V  R  Q  M  R  R  D  I  A  M  L  L  E  S  H  Q  D  A  T  A  R  I  R  :  V  E  H  V  I  R  E  Q  N  I  L  Q  A  N  E  I  L  E  L  F  C  E  L  I  V  A  R  L  T  I  I  A  K  Q  K  *  D  V  S  S  Y  *  F  F  L  R  L  E  D  K  A  H  K  *  P  *  F  L  F  I  C  L  L  Q  A  M  S  S  *  F  E  R  G  D  I  K  F  D  F  R  C  P  K  V  L  R  Y  S  R  I  D  G  N  Q  R  C  F  *  E  E  I  W  K  R  F  C  F  S  S  D  *  P  A  T  Q  C  W  C  K  P  D   : A  H  *  K  A  L  C  E  N  S  K  W  *  S  Q  T  K  N  H  E  R  N </first_frame>
            <second_frame>  H  T  L  L  I  A  S  L  S  L  S  L  L  T  R  K  *  Q  *  Q  T  L  P  P  S  T  A  R  R  P  *  R  W  V  F  L  S  S  A  E  P  S  I  L  L  N   : A  R  Q  W  Q  K  *  R  W  R  E  *  N  C  *  E  T  R  G  R  W  L  C  G  K  *  G  E  T  L  L  C  F  L  N  P  I  R  M  P  L  L  V  L  G :   S  N  M  *  *  E  N  K  I  Y  Y  K  Q  M  R  S  S  S  S  S  V  N  L  L  W  L  G  *  Q  L  L  Q  S  K  S  K  M  S  Q  A  I  N  F  F  *  G  *  K  T  K  L  T  N  N  L  D  F  Y  L  S  A  C  C  R  Q  C  P  A  D  L  K  E  G  I  S  S  L  I  F  A  A  P  R  C  S  D  I  P  E  L  M  G  I  K  D  V  F  E  K  K  Y  G  K  D  F  V  S  A  A  T  D  L  R  P  N  A  G  V  N  R  T  :  L  I  E  K  L  S  V  K  T  P  S  G  E  V  K  L  K  I  M  K  E   </second_frame>
            <third_frame>   T  L  F  S  S  L  H  S  L  S  L  F  *  Q  E  N  D  S  S  K  R  C  H  Q  A  L  Q  E  G  H  E  D  G  S  F  S  L  L  Q  N  L  Q  F  F  *  M  :  Q  D  N  G  K  N  D  G  G  E  N  K  I  A  E  K  Q  E  G  G  G  C  A  A  N  E  E  R  H  C  Y  A  S  *  I  P  S  G  C  H  C  S  Y  *   : G  R  T  C  N  K  R  T  K  Y  I  T  S  K  *  D  P  R  A  L  L  *  T  Y  C  G  *  V  N  N  Y  C  K  A  K  V  R  C  L  K  L  L  I  F  F  K  V  R  R  Q  S  S  Q  I  T  L  I  S  I  Y  L  P  V  A  G  N  V  Q  L  I  *  K  R  G  Y  Q  V  *  F  S  L  P  Q  G  A  Q  I  F  Q  N  *  W  E  S  K  M  F  L  R  R  N  M  E  K  I  L  F  Q  Q  R  L  T  C  D  P  M  L  V  *  T  G  R :   S  L  K  S  S  L  *  K  L  Q  V  V  K  S  N  *  K  S  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139498" stop="139359"/>
                    <exon start="139280" stop="139148"/>
                    <exon start="138086" stop="137979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THSSHRFTLSLSFNKKMTVANAATKHCKKAMKMGLSLFCRTFNSSKCKTMAKMTVARIKLLRNKREVVVRQMRRDIAMLLESHQDATARIRVEHVIREQNILQANEILELFCELIVARLTIIAKQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137944" stop="137723"/>
                    <exon start="137611" stop="137549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTKLTNNLDFYLSACCRQCPADLKEGISSLIFAAPRCSDIPELMGIKDVFEKKYGKDFVSAATDLRPNAGVNRTLIEKLSVKTPSGEVKLKIMKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="143348" PGL_stop="141884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143348" e_stop="141884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="143348" e_stop="141884" e_length="1465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143348" stop="141884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGAACATAACCTGTTTTGTAAAAGGAAAAAAAAAATGAACCTTTCAACAATTCGAACAATGGCTGCTCTTTCCCCAAGGTCTCATTCTCATAACTCTTACCGTACCCGTTGTGTTAGTTTTCCTGCTAGATCACACCCCAGCACAATCAAGATTGAGCAAGTTTTGAACAAAATCAAAACTTGGGAATCATCTTCTCCTTTATCTCCAAAAGCAGAAGAAAAAACCCAAAATGCCCTGTCAAGCGGCCTTGTAGAATTGTACGAGTGTATAGAGGAACTCCTTGCGTTGCCAATGACTCAGAGGGCGCTTCTCCAGCATCAAGATGACAATTTTGTGAAGGAATTGCTGGAAAGATCAGTGAGATTCATAGATATCTGTAGCAATACAAGGGATACCGTTATGTGTTTGAAAGAAAGCGTGAGAGAACTACAATCCGCGCTTCGAAGAAGCAAAGCTGGAGATGATTTATTGACTATTGAGGGTAGTGTTAGTGCTTATATTTCTTCAAGAAAAAACGCTCAAAAGGAAATTGAAAAATCCCTTACTATACTGAAACAGATACATAACACCCCATCAGCCACAATGAAAGACTCTCAGCTCTCTGCTATAATAAGAGTTCTTGAAGATGCCAGTTTCACAACTATTTCTACTTTCCAGTCATTGCTGATGTTTCTTTATGTGCCAGCCTCGAAACCAAAGTCCAATAAATGGTCATTGGTTTCGAAGCTAGTACATAAAGGGGTTGTAGGCAGTGAAGGGCAAAGGGAAAAGCTAACTGAGTTGGAGAAAGTTGACACTGCACTCAACAGCTTGCTGGATCATGTTTCTGGACATGAAGAGGAAGTGGAAAGTTTTGAATTTGCACAAAAGAATCTGGAGAATTTGGAGAGTAGCATTGAGGATCTTGAAAATGGATTGGAAATGTTGTTCAAGCTTTTGATCCGGACAAGGGTGTCTCTACTCAACATACTTTCTCTCAGTAGATAAATTGAGGTATCATGCATAACAGCTCAAGTATTTTTTTGCATGATTGAAGCTGTGATGTATAGATATTGAATTTCTAGTCATTGAGTACTGTAGATGAACATATTGTGTATAGTATTAGCAGCTAAGGGTGAAGAGGATTAAGAAACATGGACAAAGTTTTCCAATTTCCTAATCTTTTTCTCTGTTTGTCTTTTGTGTTATTCCAGTTTTACAGATTAGTGCCAAAATTTTGCAGAGGTGCTAATTCTGGCCAAGATTAGTTATTATTTGGACTTGAGGCCCAAAGAAGTCCAAGAGTGTGTGCAAGTAACATGTAGCTGTCAATGGGCTGATATGATATGAGTAGGCCCATTCAGTATTTCAGTCCATTAAGGGATTTTAGCCCTTTCTTGTGTATGTTCATTCTGTACTATATAATCCATTAATTAATGGATCTAATTGCTCATTGTGTATGAAATTTGTGAATTTTTTTTTT</gDNA_template>
            <first_frame> H  E  H  N  L  F  C  K  R  K  K  K  M  N  L  S  T  I  R  T  M  A  A  L  S  P  R  S  H  S  H  N  S  Y  R  T  R  C  V  S  F  P  A  R  S  H  P  S  T  I  K  I  E  Q  V  L  N  K  I  K  T  W  E  S  S  S  P  L  S  P  K  A  E  E  K  T  Q  N  A  L  S  S  G  L  V  E  L  Y  E  C  I  E  E  L  L  A  L  P  M  T  Q  R  A  L  L  Q  H  Q  D  D  N  F  V  K  E  L  L  E  R  S  V  R  F  I  D  I  C  S  N  T  R  D  T  V  M  C  L  K  E  S  V  R  E  L  Q  S  A  L  R  R  S  K  A  G  D  D  L  L  T  I  E  G  S  V  S  A  Y  I  S  S  R  K  N  A  Q  K  E  I  E  K  S  L  T  I  L  K  Q  I  H  N  T  P  S  A  T  M  K  D  S  Q  L  S  A  I  I  R  V  L  E  D  A  S  F  T  T  I  S  T  F  Q  S  L  L  M  F  L  Y  V  P  A  S  K  P  K  S  N  K  W  S  L  V  S  K  L  V  H  K  G  V  V  G  S  E  G  Q  R  E  K  L  T  E  L  E  K  V  D  T  A  L  N  S  L  L  D  H  V  S  G  H  E  E  E  V  E  S  F  E  F  A  Q  K  N  L  E  N  L  E  S  S  I  E  D  L  E  N  G  L  E  M  L  F  K  L  L  I  R  T  R  V  S  L  L  N  I  L  S  L  S  R  *  I  E  V  S  C  I  T  A  Q  V  F  F  C  M  I  E  A  V  M  Y  R  Y  *  I  S  S  H  *  V  L  *  M  N  I  L  C  I  V  L  A  A  K  G  E  E  D  *  E  T  W  T  K  F  S  N  F  L  I  F  F  S  V  C  L  L  C  Y  S  S  F  T  D  *  C  Q  N  F  A  E  V  L  I  L  A  K  I  S  Y  Y  L  D  L  R  P  K  E  V  Q  E  C  V  Q  V  T  C  S  C  Q  W  A  D  M  I  *  V  G  P  F  S  I  S  V  H  *  G  I  L  A  L  S  C  V  C  S  F  C  T  I  *  S  I  N  *  W  I  *  L  L  I  V  Y  E  I  C  E  F  F  F  </first_frame>
            <second_frame>  M  N  I  T  C  F  V  K  G  K  K  K  *  T  F  Q  Q  F  E  Q  W  L  L  F  P  Q  G  L  I  L  I  T  L  T  V  P  V  V  L  V  F  L  L  D  H  T  P  A  Q  S  R  L  S  K  F  *  T  K  S  K  L  G  N  H  L  L  L  Y  L  Q  K  Q  K  K  K  P  K  M  P  C  Q  A  A  L  *  N  C  T  S  V  *  R  N  S  L  R  C  Q  *  L  R  G  R  F  S  S  I  K  M  T  I  L  *  R  N  C  W  K  D  Q  *  D  S  *  I  S  V  A  I  Q  G  I  P  L  C  V  *  K  K  A  *  E  N  Y  N  P  R  F  E  E  A  K  L  E  M  I  Y  *  L  L  R  V  V  L  V  L  I  F  L  Q  E  K  T  L  K  R  K  L  K  N  P  L  L  Y  *  N  R  Y  I  T  P  H  Q  P  Q  *  K  T  L  S  S  L  L  *  *  E  F  L  K  M  P  V  S  Q  L  F  L  L  S  S  H  C  *  C  F  F  M  C  Q  P  R  N  Q  S  P  I  N  G  H  W  F  R  S  *  Y  I  K  G  L  *  A  V  K  G  K  G  K  S  *  L  S  W  R  K  L  T  L  H  S  T  A  C  W  I  M  F  L  D  M  K  R  K  W  K  V  L  N  L  H  K  R  I  W  R  I  W  R  V  A  L  R  I  L  K  M  D  W  K  C  C  S  S  F  *  S  G  Q  G  C  L  Y  S  T  Y  F  L  S  V  D  K  L  R  Y  H  A  *  Q  L  K  Y  F  F  A  *  L  K  L  *  C  I  D  I  E  F  L  V  I  E  Y  C  R  *  T  Y  C  V  *  Y  *  Q  L  R  V  K  R  I  K  K  H  G  Q  S  F  P  I  S  *  S  F  S  L  F  V  F  C  V  I  P  V  L  Q  I  S  A  K  I  L  Q  R  C  *  F  W  P  R  L  V  I  I  W  T  *  G  P  K  K  S  K  S  V  C  K  *  H  V  A  V  N  G  L  I  *  Y  E  *  A  H  S  V  F  Q  S  I  K  G  F  *  P  F  L  V  Y  V  H  S  V  L  Y  N  P  L  I  N  G  S  N  C  S  L  C  M  K  F  V  N  F  F  F </second_frame>
            <third_frame>   *  T  *  P  V  L  *  K  E  K  K  N  E  P  F  N  N  S  N  N  G  C  S  F  P  K  V  S  F  S  *  L  L  P  Y  P  L  C  *  F  S  C  *  I  T  P  Q  H  N  Q  D  *  A  S  F  E  Q  N  Q  N  L  G  I  I  F  S  F  I  S  K  S  R  R  K  N  P  K  C  P  V  K  R  P  C  R  I  V  R  V  Y  R  G  T  P  C  V  A  N  D  S  E  G  A  S  P  A  S  R  *  Q  F  C  E  G  I  A  G  K  I  S  E  I  H  R  Y  L  *  Q  Y  K  G  Y  R  Y  V  F  E  R  K  R  E  R  T  T  I  R  A  S  K  K  Q  S  W  R  *  F  I  D  Y  *  G  *  C  *  C  L  Y  F  F  K  K  K  R  S  K  G  N  *  K  I  P  Y  Y  T  E  T  D  T  *  H  P  I  S  H  N  E  R  L  S  A  L  C  Y  N  K  S  S  *  R  C  Q  F  H  N  Y  F  Y  F  P  V  I  A  D  V  S  L  C  A  S  L  E  T  K  V  Q  *  M  V  I  G  F  E  A  S  T  *  R  G  C  R  Q  *  R  A  K  G  K  A  N  *  V  G  E  S  *  H  C  T  Q  Q  L  A  G  S  C  F  W  T  *  R  G  S  G  K  F  *  I  C  T  K  E  S  G  E  F  G  E  *  H  *  G  S  *  K  W  I  G  N  V  V  Q  A  F  D  P  D  K  G  V  S  T  Q  H  T  F  S  Q  *  I  N  *  G  I  M  H  N  S  S  S  I  F  L  H  D  *  S  C  D  V  *  I  L  N  F  *  S  L  S  T  V  D  E  H  I  V  Y  S  I  S  S  *  G  *  R  G  L  R  N  M  D  K  V  F  Q  F  P  N  L  F  L  C  L  S  F  V  L  F  Q  F  Y  R  L  V  P  K  F  C  R  G  A  N  S  G  Q  D  *  L  L  F  G  L  E  A  Q  R  S  P  R  V  C  A  S  N  M  *  L  S  M  G  *  Y  D  M  S  R  P  I  Q  Y  F  S  P  L  R  D  F  S  P  F  L  C  M  F  I  L  Y  Y  I  I  H  *  L  M  D  L  I  A  H  C  V  *  N  L  *  I  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143348" stop="142359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEHNLFCKRKKKMNLSTIRTMAALSPRSHSHNSYRTRCVSFPARSHPSTIKIEQVLNKIKTWESSSPLSPKAEEKTQNALSSGLVELYECIEELLALPMTQRALLQHQDDNFVKELLERSVRFIDICSNTRDTVMCLKESVRELQSALRRSKAGDDLLTIEGSVSAYISSRKNAQKEIEKSLTILKQIHNTPSATMKDSQLSAIIRVLEDASFTTISTFQSLLMFLYVPASKPKSNKWSLVSKLVHKGVVGSEGQREKLTELEKVDTALNSLLDHVSGHEEEVESFEFAQKNLENLESSIEDLENGLEMLFKLLIRTRVSLLNILSLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="150426" PGL_stop="149002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150426" e_stop="150102"/>
            <exon e_start="150066" e_stop="149002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="150426" e_stop="150102" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="150101" i_stop="150067" i_length="35"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="150066" e_stop="149002" e_length="1065"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150426" stop="150102"/>
              <exon start="150066" stop="149002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572565" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCGGGACTAACTGGAAACCCGACAACTAGACCCATACCCATTCTCCCTCCTATCCCCATGGAAATGGAATACTTCACCACACTTTCCATGTACTTGGGGTGAAACTCCGATCCATTGCTTGTCTCAAAGTGACTTGGCGGAGGATCCAAAGAAAAGGCCAGCAAATGCAGCAGCCAAACGGCCTTTGCTAGCCCAAGAAACTCTCCGTAAAACTGACTCCTCGGATGGTTCCCAGCCAGTACCTGACGCCTCTGCTCCAAATCACCAAACAAAGACTCCTCCATTTTAGGATGCACGATGGCCAAATACTTCTTGAAACAG : AAGTTCCATTGGGTCCATGGCTTTCATGTCCCTGTACTGTGTATAACACTCCCGGCGGTGCTGGTCTGGGTGGAGGAGTGATGACAAGCTTCCGTCCATGTAGAACGTCTCGTGATCGAATCCTTGGAACATTTTGCGGTTCACATAAGATTCCAGTGCGTATTTTGCATGGTTGGCTCCGACAATTGAATCCGCCGTTGGTGTGGTGGAGTTAGATGAAGCAGCTTCAATGGATCTCACTGCCGCCGCAATGTCCCAGTGAGCAGAGCGCATCAAAGAGAGGAGCATACTCGTGAAGGATTTTGAGGCTTCTTTTACTGAGCTCACTGTAGATTCGAACAGGTCAGGTGCCGGCGACATATTAACTGGAGCTTGACTGCTGCAGTTAACTCTCCGTTTTGACTTGTTTTTCTTTCCACTATTGCTGCTAAGCAACGTCGCCGTTTTTAGCTTTTCCTTCAAATCATCGATCTCAATATCCTTTGCCTTCACCTCTTGCTTCAGTTCTTCCACGGCTGACTCATACGGCGCCACCACTTCTCTCAGCGTCGCCACCCCGACTCTCCAGTCCCCTCTTTCACTTCCACCGCCGACATTCCGCCGGAATCTTTCCCTCAACACTCCAAGCCTTCGCAGTTCAGATATCACAGCCACGTCAGCCACGCGCATTTTATCCTGATCCCAAGGACAATGCGCCTCCTGTAGACTAACGTAAGCCTTCTTCATTGCCGACACTGCATCAAACACTTCCCCTAAAAGCATTTCCATTTCATTTACTTTCTCAGTTCTTATCTCCTCATTTTTTACCTCGAAATTCTGGAATTTTTCCAGAGTTTCCACATAAGGTGAGTGTTCTTCTTCTTCTTCTTCGGTAGTGTACTTGTCATCTTCAGATTCGTCGGCGTCACGAGCACCAGAGATGTGGCCGTTGGAGGAAAGTGGGTGGAGCAAGCAAGAAGCAGTGACACGTTGGATCAGATCCGAGAAATTGGAAACCTTGTTGGCCATTGTCTAACACAGTAGCAGCAATTTTGGGATCAAAAGTGAAACAAGACTTGACAGTCC</gDNA_template>
            <first_frame> K  P  G  T  N  W  K  P  D  N  *  T  H  T  H  S  P  S  Y  P  H  G  N  G  I  L  H  H  T  F  H  V  L  G  V  K  L  R  S  I  A  C  L  K  V  T  W  R  R  I  Q  R  K  G  Q  Q  M  Q  Q  P  N  G  L  C  *  P  K  K  L  S  V  K  L  T  P  R  M  V  P  S  Q  Y  L  T  P  L  L  Q  I  T  K  Q  R  L  L  H  F  R  M  H  D  G  Q  I  L  L  E  T   : E  V  P  L  G  P  W  L  S  C  P  C  T  V  Y  N  T  P  G  G  A  G  L  G  G  G  V  M  T  S  F  R  P  C  R  T  S  R  D  R  I  L  G  T  F  C  G  S  H  K  I  P  V  R  I  L  H  G  W  L  R  Q  L  N  P  P  L  V  W  W  S  *  M  K  Q  L  Q  W  I  S  L  P  P  Q  C  P  S  E  Q  S  A  S  K  R  G  A  Y  S  *  R  I  L  R  L  L  L  L  S  S  L  *  I  R  T  G  Q  V  P  A  T  Y  *  L  E  L  D  C  C  S  *  L  S  V  L  T  C  F  S  F  H  Y  C  C  *  A  T  S  P  F  L  A  F  P  S  N  H  R  S  Q  Y  P  L  P  S  P  L  A  S  V  L  P  R  L  T  H  T  A  P  P  L  L  S  A  S  P  P  R  L  S  S  P  L  F  H  F  H  R  R  H  S  A  G  I  F  P  S  T  L  Q  A  F  A  V  Q  I  S  Q  P  R  Q  P  R  A  F  Y  P  D  P  K  D  N  A  P  P  V  D  *  R  K  P  S  S  L  P  T  L  H  Q  T  L  P  L  K  A  F  P  F  H  L  L  S  Q  F  L  S  P  H  F  L  P  R  N  S  G  I  F  P  E  F  P  H  K  V  S  V  L  L  L  L  L  R  *  C  T  C  H  L  Q  I  R  R  R  H  E  H  Q  R  C  G  R  W  R  K  V  G  G  A  S  K  K  Q  *  H  V  G  S  D  P  R  N  W  K  P  C  W  P  L  S  N  T  V  A  A  I  L  G  S  K  V  K  Q  D  L  T  V  </first_frame>
            <second_frame>  N  P  G  L  T  G  N  P  T  T  R  P  I  P  I  L  P  P  I  P  M  E  M  E  Y  F  T  T  L  S  M  Y  L  G  *  N  S  D  P  L  L  V  S  K  *  L  G  G  G  S  K  E  K  A  S  K  C  S  S  Q  T  A  F  A  S  P  R  N  S  P  *  N  *  L  L  G  W  F  P  A  S  T  *  R  L  C  S  K  S  P  N  K  D  S  S  I  L  G  C  T  M  A  K  Y  F  L  K  Q  :  K  F  H  W  V  H  G  F  H  V  P  V  L  C  I  T  L  P  A  V  L  V  W  V  E  E  *  *  Q  A  S  V  H  V  E  R  L  V  I  E  S  L  E  H  F  A  V  H  I  R  F  Q  C  V  F  C  M  V  G  S  D  N  *  I  R  R  W  C  G  G  V  R  *  S  S  F  N  G  S  H  C  R  R  N  V  P  V  S  R  A  H  Q  R  E  E  H  T  R  E  G  F  *  G  F  F  Y  *  A  H  C  R  F  E  Q  V  R  C  R  R  H  I  N  W  S  L  T  A  A  V  N  S  P  F  *  L  V  F  L  S  T  I  A  A  K  Q  R  R  R  F  *  L  F  L  Q  I  I  D  L  N  I  L  C  L  H  L  L  L  Q  F  F  H  G  *  L  I  R  R  H  H  F  S  Q  R  R  H  P  D  S  P  V  P  S  F  T  S  T  A  D  I  P  P  E  S  F  P  Q  H  S  K  P  S  Q  F  R  Y  H  S  H  V  S  H  A  H  F  I  L  I  P  R  T  M  R  L  L  *  T  N  V  S  L  L  H  C  R  H  C  I  K  H  F  P  *  K  H  F  H  F  I  Y  F  L  S  S  Y  L  L  I  F  Y  L  E  I  L  E  F  F  Q  S  F  H  I  R  *  V  F  F  F  F  F  F  G  S  V  L  V  I  F  R  F  V  G  V  T  S  T  R  D  V  A  V  G  G  K  W  V  E  Q  A  R  S  S  D  T  L  D  Q  I  R  E  I  G  N  L  V  G  H  C  L  T  Q  *  Q  Q  F  W  D  Q  K  *  N  K  T  *  Q  S </second_frame>
            <third_frame>   T  R  D  *  L  E  T  R  Q  L  D  P  Y  P  F  S  L  L  S  P  W  K  W  N  T  S  P  H  F  P  C  T  W  G  E  T  P  I  H  C  L  S  Q  S  D  L  A  E  D  P  K  K  R  P  A  N  A  A  A  K  R  P  L  L  A  Q  E  T  L  R  K  T  D  S  S  D  G  S  Q  P  V  P  D  A  S  A  P  N  H  Q  T  K  T  P  P  F  *  D  A  R  W  P  N  T  S  *  N  R :   S  S  I  G  S  M  A  F  M  S  L  Y  C  V  *  H  S  R  R  C  W  S  G  W  R  S  D  D  K  L  P  S  M  *  N  V  S  *  S  N  P  W  N  I  L  R  F  T  *  D  S  S  A  Y  F  A  W  L  A  P  T  I  E  S  A  V  G  V  V  E  L  D  E  A  A  S  M  D  L  T  A  A  A  M  S  Q  *  A  E  R  I  K  E  R  S  I  L  V  K  D  F  E  A  S  F  T  E  L  T  V  D  S  N  R  S  G  A  G  D  I  L  T  G  A  *  L  L  Q  L  T  L  R  F  D  L  F  F  F  P  L  L  L  L  S  N  V  A  V  F  S  F  S  F  K  S  S  I  S  I  S  F  A  F  T  S  C  F  S  S  S  T  A  D  S  Y  G  A  T  T  S  L  S  V  A  T  P  T  L  Q  S  P  L  S  L  P  P  P  T  F  R  R  N  L  S  L  N  T  P  S  L  R  S  S  D  I  T  A  T  S  A  T  R  I  L  S  *  S  Q  G  Q  C  A  S  C  R  L  T  *  A  F  F  I  A  D  T  A  S  N  T  S  P  K  S  I  S  I  S  F  T  F  S  V  L  I  S  S  F  F  T  S  K  F  W  N  F  S  R  V  S  T  *  G  E  C  S  S  S  S  S  S  V  V  Y  L  S  S  S  D  S  S  A  S  R  A  P  E  M  W  P  L  E  E  S  G  W  S  K  Q  E  A  V  T  R  W  I  R  S  E  K  L  E  T  L  L  A  I  V  *  H  S  S  S  N  F  G  I  K  S  E  T  R  L  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150231" stop="150102"/>
                    <exon start="150066" stop="149852"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKLSVKLTPRMVPSQYLTPLLQITKQRLLHFRMHDGQILLETEVPLGPWLSCPCTVYNTPGGAGLGGGVMTSFRPCRTSRDRILGTFCGSHKIPVRILHGWLRQLNPPLVWWS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149690" stop="149388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQLTLRFDLFFFPLLLLSNVAVFSFSFKSSISISFAFTSCFSSSTADSYGATTSLSVATPTLQSPLSLPPPTFRRNLSLNTPSLRSSDITATSATRILS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="149635" stop="149357"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATSPFLAFPSNHRSQYPLPSPLASVLPRLTHTAPPLLSASPPRLSSPLFHFHRRHSAGIFPSTLQAFAVQISQPRQPRAFYPDPKDNAPPVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0060J03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150412" stop="150134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LETRQLDPYPFSLLSPWKWNTSPHFPCTWGETPIHCLSQSDLAEDPKKRPANAAAKRPLLAQETLRKTDSSDGSQPVPDASAPNHQTKTPPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 55 chains have been computed
$ 
$ memory statistics:
$ 65232 bytes spliced alignments in total
$ 30 spliced alignments have been stored
$ 2174 bytes was the average size of a spliced alignment
$ 30488 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1604 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 62 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-27 20:01:49
-->
