<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:44:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600100" ref_strand="+" ref_description="SGN-U600100 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagaacttttttccttgatttcaggatttcttatttgtgcctctaactgttaagctttctttctccaccaaaattgctgcaactatagagatattagtgctggtaggcatctttcagatacttatttcattgtgtacaatgggtttcttcaaaagtcatgttcactagaataatattctggaggagggggagtctatgcgatattttggtgtctgctattcttcaatgtcagtccacatatctgaaactatttgagcagagttcataatacctgaaactatttgatcaggatattgattaaattagttgtcttcgagttgcttatataacatcagattcttgttatacttgaaaaagcttataatccacagttcgttacttgacctctgtgaccacacattatttcagttattgaaatccatctaagatgattatatttgtcattgatctgcttgattagtcttgtgaagcaacaccaaataccaacacacccttcttctgtgaaggaaatttgttttttagcagtattttgttattagcttatgtggaattatcattatcttattcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="6314" stop="7483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6614" g_stop="7183" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U600100" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6614" e_stop="7183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTC---C-CCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</genome_strand>
        <mrna_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGCCTCTAACTGTTAAGCTTTCTTTCTCCACCAAAATTGCTGCAACTATAGAGATATTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGG-TTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGAGTCTATGCGATATTTTGGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGCAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTGCTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACCTCTGTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCAACACCAAATACCAACACACCCTTCTTCTGTGAAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTTATTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574375" ref_strand="+" ref_description="SGN-U574375 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157329862|emb|CAO42766.1| (e_value=5e-89) unnamed; (*ATH) AT4G21440.1 (e_value=2e-79) | Symbol: None | myb family transcription factor (MYB102), contains Pfam profile: PF00249 myb-like DNA-binding domain | chr4:11418257-11419771 REVERSE | Aliases: F18E5.60; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=7e-47) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39; ">
      <seq>ttgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaattcaagatttttcaactataagtacaaccccatgtgttccattttctagtcaagaagctcaactcatgcagccaccaattacaacaaaaatagaggatttctcatcagatcttgaaaactttggtaactcccaaaataattgtcaagttattaatgatgatgagtggcaattaagcaatggtgtaacggatgattattttcctttacaaaactatgggtactatgatcctttaacgtccgatgaaaacaacaacaattttaatctccagtcagttgttttgttgaatttattgaccccttcatcaagtcctacgccattgaattcaaattcaactttcttcaacaatagcagcagcccaacttctgaagatgaaagagatagcttctgcagcaacatgttgaactttgataatattcccaaatatttgggatactaactaaagaatttatgtaatttttacgcttttttttttttaaaggaaccaaacaaacagttcgaaaagaggtgttttattttttttttttacctctgagcttttggacatgttgttgtttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="19309" stop="21274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19609" g_stop="19665" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19892" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20046" g_stop="20974" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="1120" r_length="933" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U574375" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1116</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19609" e_stop="19665"/>
          <exon e_start="19763" e_stop="19892"/>
          <exon e_start="20046" e_stop="20974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTCTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTCGAATTTATCGACACCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATT-CCAAATATCTGGGATACT-ACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAA-CAAACAAACAGTTCG-AAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</genome_strand>
        <mrna_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCAAGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCCCAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTTTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTTGAATTTATTGACCCCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTTCTTCAACAATAGCAGCAGCCCAACTTCTGAAGATGAAAGAGATAGCTTCTGCAGCAACATGTTGAACTTTGATAATATTCCCAAATATTTGGGATACTAACTAAAGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACCAAACAAACAGTTCGAAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573651" ref_strand="+" ref_description="SGN-U573651 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|28200388|gb|AAO31791.1| (e_value=2e-98) SP2G [Lycopersicon esculentum]; (*ATH) AT1G18100.1 (e_value=3e-52)  Symbol: None | mother of FT and TF1 protein (MFT), identical to SP:Q9XFK7 MOTHER of FT and TF1 protein {Arabidopsis thaliana}; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein | chr1:6227205-6230181 REVERSE | Aliases: T10F20.1... ; (*SWP) sp|Q9XFK7|MFT_ARATH (e_value=2e-51) Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT; ">
      <seq>gcttcggcgaggtcggtagatcctctagtggtcggaaaggtgatcggagatgttttggacatgtttgttccggtggttgactttacggtggagtatgcttccaaacaaatatcgaataatggagttgaaattaagccagcagaagctgcacaaaagcctagagttcatataaagggttctcttcattctaataatctttacacccttgttatggctgatccagatgctcctagtccaagtgaaccgacttttagagaatggctccattggattgtcacggatattcctgagggaggtgatgcctctcaagggagggagatggtggaatatatgggaccgaagccaccggcagggatacatcgatacgtgttcactctgtttaggcagaaggaggcggagcaagtgccccataaaccaccacaagggcgatccaatttcaagactcgacagtttgcaagtgacaatggacttgatcttcctgtggctgcactgtactttaattcacaaaaggaacatgctgctcatcactagctctttacaatgtgtgctgctatatatagcaatgtaattactaccttatgcttgttagctagtattgcaagtgctttgcatatatagagttatgtatacttgtgtttatgtgagnngcattatatttataannnatgtgcatgtgctgtttgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="34838" stop="36545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35137" g_stop="35343" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35344" i_stop="35491" i_length="148">
            <donor d_prob="0.387" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35492" g_stop="35553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="269" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35554" i_stop="35686" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35687" g_stop="35727" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="310" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35728" i_stop="35866" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35867" g_stop="36245" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="688" r_length="378" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U573651" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35137" e_stop="35343"/>
          <exon e_start="35492" e_stop="35553"/>
          <exon e_start="35687" e_stop="35727"/>
          <exon e_start="35867" e_stop="36245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTTGTAAGATTAATTATTTATTATTTGTACTATTTCAAAAGTCATCTAAGAGCAATCATAAAATTAGAGTTTTTTTTTTTTTAGAAAATTAAATATGCAAATTGAGTGTCTTTTTCAAGAATTTTAATATTTGGTCCACTGTATTTTACAGGTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTGGTACGTACTCTATTCATTGTTGTTTCATTTTCTCCTTCAATTAGCCTGCATACGTCTTTTATTTAATTTTAAAACTTTATATTTAAGTACCAATAAAGTAGTTTCGATATGATTATGCTACTATCTCTTTCAGGATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAGGTATTAATTGAGATAACTATTATTAATTGTACCCTTTTTTAAGTTTCTAGATGCAGGGTAGCTACCAAGTTGTTATTACTATTATCGCACATGGTCTTTTTGTCGATGCATATACGAGTTGTTTGTTCACTTGGTGCAGGGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTTATGTGAGGTGCATTATATTTATAAGAATATGTGCATGTGCTGTTTGATATC</genome_strand>
        <mrna_strand>GCTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTT....................................................................................................................................................GTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTG.....................................................................................................................................GATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAG...........................................................................................................................................GGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTTATGTGAGNNGCATTATATTTATAA-NNNATGTGCATGTGCTGTTTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582342" ref_strand="-" ref_description="SGN-U582342 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147822449|emb|CAN59730.1| (e_value=1e-49) hypothetical; (*ATH) AT4G21430.1 (e_value=2e-41)  Symbol: None | similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:At1g62310.1); similar to putative DNA-binding protein PD3, chloroplast [Oryza sativa (japonica cultivar-group)] (GB:XP_468520.1); co... ; (*SWP) sp|Q9Y4C1|JHD2A_HUMAN (e_value=4e-20) JmjC domain-containing histone demethylation protein 2A OS=Homo sapiens GN=JMJD1A; ">
      <seq>agaagatgtcccaaagcttctagagtacctcaaaaggcattctagcgagttcacctcaatgcgtggttattccaaacaagttgttcacccaattcttgatcaaagtttcttctttgatgcattccacaaaatgaggcttaaggaggaattcgatgttcaaccttggacttttgaacaacatcttggagaagctattatcatccctgctggatgtccatatcaagtcaaacaacttaagtcatgtatcaacgttgttttgcacttcatctcccctgaaaacgtcgctgaatgtataaacgtaactgatgaaattcgtctacttcctgagcaccacaaggccaggggaaaagtgctggaggtgaagaaaatggttatctgtgggatgaagaatgcaattgcagaaattcgcaacctcacgcatagcaaacagtcctcttgaaagatgatagacaaaactgatttgatgcagatctcgtagactttgcaggttcgtgcttacatactgctagggagtagaatctagttcttttttatgacaaaggagggatgactggatactgattgcttaagatctttgtcacttggcaaagatttacttatgtgtatatatgttagaaccattaaggtgtaactcatagatctactcagtgacagatttaactcataaaaaggcaatgtaaacatatgctactatttaatactgcattctacatgctttgataggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="39488" stop="36488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39188" g_stop="39110" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39109" i_stop="39022" i_length="88">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39021" g_stop="38949" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="152" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38948" i_stop="38872" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38786" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="238" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38785" i_stop="37583" i_length="1203">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37582" g_stop="37463" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="358" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37462" i_stop="37155" i_length="308">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37154" g_stop="36790" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="723" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U582342" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582342" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39188" e_stop="39110"/>
          <exon e_start="39021" e_stop="38949"/>
          <exon e_start="38871" e_stop="38786"/>
          <exon e_start="37582" e_stop="37463"/>
          <exon e_start="37154" e_stop="36790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAAGTACAGCTCTTTGTACCAAGAGTTTTGTGGTAAAAGGTAGAGCATGGCAATAGAAATTAACTTAATCTCCATCTTTTGGCACGTGCAGGTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCGGTATATTTGCTTTGTCTTCTTTTATCTTTTTCATTTGGATTAAATTAGTTCTAAGTCTTAATGTTATTACTTTTTAGATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAGGTATCCTTTATAATGATGACATTCATACTTCTTCACACAATTTGATGAGAAATCCTGCATATCTCCATCTCTCTCCTGTTCTTGTAGTAACCAAGTTTGAAAGAATAAGCACTTTGTGTAATGAAACCACCAAGAATTGTAGCTTGATTTCCTCACTGCTCATATAGATGTTTACTATATTGGGTATTTTGAACAAAGAATTAAGAGCTGTTTTTCTGGTCATTCATGGAGTTATTTCATAGTAAATGTGTGACTTGGAGATAATATTAGCAAAAAATATCCAGGTCAATTAAATAGTTCCCACCATATTCAAATGCTGGTTTGTTTAAGATGACATCTTCTGTGCTGTAACTTCTTCAAAGAAGTTAGATTTCTGTTTCATTAATTTGCAGCATTATTAACTGAAGCTTATTGATGGCAGTTTTGTTAAAGGTTCGGATGAGGAACGCTTATGCCCCTGAAACAAGGTGCAAAGCGGCTGGCGCTTCGCGTTGCTTAGGTGGCACTTCAGTGCAGACACCAAGGCAATACGGTGTGCGCCTCTTCACCCACGAGCTCCTTCTTGAATAAGACAACACTAAACACTAAACATAGCTGACTAATTGATGTATTAAATACATTAGCTAAGCTCTATGAATGATTTGTCATGATTAAAAATAGGAATTGCTCTATAGGGTGAATTAGGAATAGGAAACTAGAAATCCAGTATAAGAAAATAAGTCAGCATACCTGAAATTAATAAATAAAATTGCAACTATGCATCTGAATCATAAAATTATGGTTTTGCACTAATTTTACAACATATTTACTACTATATCTTCGTTCTTTACCCCTCCTTAGTTTGCTTCCTTCATTTTTTTCTCCCTTGTTCACTCGAACTCACAACTTTCAAGCTGGAAGTGAGGGATGCTTACCATCCGAGCAACTCCCTCCCTTCATATATTACTATATCTATTTTACCTTTTTCATATTTTTCAATTCCGTTATCCATATTTCCATGTTCTGATTTGACATGCTGGGAACTGTTCAATAGTTTTCATTAGCTCTTGTATGTCTTAAGAAGCCTCAAAACAAGCCTAACATTGTTTTTAATTTGTGCATATTATATACTGAAGCGATTCTAGTCTCGGATATAACAGTATCTGGGACTTCATATCTGTTGGTGCATAATAACTAACAAAAGATTCTATCCTCTGTCCACAGTCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAGGTAAGTTTCATATTGCCCCATCTTTTAGTTGCTAGAATCAGGTTCACACTGCTATAATATAGAAATTTAAGCATTTTAAGCATGTCATTGTTTGATGAATTTACGAACTTCATGCTCAGGAGTAGGTATTATGCTTGTCTAGACTTCTGTTATCATTCATACTTGGTAGCATGTCTATCAGTCCTTCTCTAAAGAAAATGCTTCTTCATCAAGCTTTTTAGTTAAATCCAAAATAGGTGTAATGTTCATTTACGTTTACGCTATCTTCTTAACATCCATTAATGTAACTGTTATAATTTAACAAACAGGTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</genome_strand>
        <mrna_strand>AGAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAA........................................................................................GTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCG.............................................................................ATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAG....................................................................................................................................................................................................................................................................................................................GTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600736" ref_strand="+" ref_description="SGN-U600736 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328546|emb|CAO21257.1| (e_value=2e-56) unnamed; (*ATH) AT4G21430.1 (e_value=2e-48)  Symbol: None | similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:At1g62310.1); similar to putative DNA-binding protein PD3, chloroplast [Oryza sativa (japonica cultivar-group)] (GB:XP_468520.1); co... ; ">
      <seq>cgaaattcgagggataagtttctgtatagtccatctataaataatcttcgtgaggaaaaccttgaacactttcagaaacactggggtgaaggtcatcctattatagtacggaatgtgcttcggaattcttctaatttgtcttgggatccagttgttatgttctgcacttaccttgagaaaaggtcaaaatgttccttggataaagaaacagctaaggcacaaaatcactcggactggtgtgaggtggaaatagctagaaaacagatatttatggggtcacttgaatggcaaacacatgcaacaatgcagcgtgaaatagtaaaattcaaagcatggctttcttcccatctattccaagagcaatttcctggtcaccatgctgagatcttgcaggctataccactacaagagtatatgaatccaaaatctggtcttctaaatctagcagttaaattgccaccggaaatgccacaaactgatttaggaccttcaatctatatttcctatggtgggcctgaagaactatcacaagcagaatttatctctaacctatgttgtgaatcatatgatatggttaatattcttgcaagtgctactgatgttcttgcttccangaaacagtaagaaaaataaaatgtttaatgaaaaataagaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="42650" stop="39249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42350" g_stop="42108" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42107" i_stop="40359" i_length="1749">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40358" g_stop="40029" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="573" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40028" i_stop="39635" i_length="394">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39634" g_stop="39549" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="658" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U600736" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42350" e_stop="42108"/>
          <exon e_start="40358" e_stop="40029"/>
          <exon e_start="39634" e_stop="39549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAGGTAATTATTTTGATGCTCTCTTCTTTAATTCTCCTCTGGGCCCTTGACAAGAAGTTCCTTCTATCATCACCCTTGACAAGAATTTATCTCTAATTACAAAAGGATGCGATCGAAAATGTATGTTTGGTTCAAACTTGAAATAAGTTAAGACAGAAAGGCTATTCTCCACATTATAACAAAATTTGCACTCTATCCTCAATGGGAAGAAATTTAGGGATAAGTTCATCCAACCTTTTTTTTTTAAATTCAAAATATTGGATGTGTCTGAGATAGCTTGTGTGCACCTTTACCGTTCTACTGATTACCTGATATGTCCTACCAGTATTGGTACTGTGTAACTATGCCCTCCGAGGCTTTGACAGATGGGAAGAAATCAACTATTGTTGATCTCGACCCCTAGTCTCGATACTTTCACCCACTTTTTACCTCTTGGCTACAAAATCAGAAGGATGCATGGACTAAGTTCATGTAAAGGAAAACTGCACTTTTCCTGTTAATAATTGTGATTATGGAAGAGCTGGAGACTTAAGCGGAAGCTGTAGGGTCTTAGTTGTTGTCATATCCTAGATATTCTTATATCTTAAGCATGTTTTTCTTGGTTTATAGAACAAAGATAGATGTCTATGGACTTCTCTCTTTGGTTTAGGACAGTAAGAACTGCTCTCTATTTTATTTTATATGGTAGTCTTAGACAGGACATGAATTTTGATAAAGAAACCAAGAAGGCTCTGACACATAAGGTAAATATATGTAACACAGAAAAGTACCCAAAGAAGCTTATAGTGTTCAGCATATCATGCCAATTCCTCTAAGAGCGTATCATTGAAGGCAAACGAGCGTGTCAAGAGTTAAAGAGTTTCCAAAGATAAAAGGCGTCAATCTTTTCAAAATGGACCAAAAAGGAAATAGTGTCATGTTAAATGTAGGGGGCGGGATAGGATGGGGTAAGTATAGAAAAGGAAGAGAAAATTAATATGATGGATCTATTATGTATATATCTTAGTTTTATTTGCCTTGCACCCTGCATTCTCACCACCTGTAGAAATAGAAAAGGAAGAGAAAATTAATATGATGGATCTATCATCTATTTTTCTTATTTGTATCGCCTTGCACCCTACATTTTCACCACCTGTAGAAATAGAAAAGGAAGACAAAATTAATATGATGGATCTATCATCTATATATTTTATTTGTATTCGCCTTGCTCCCTGCATTCTCACCACCTGTAGAAATAGAAAAGGAAGAGAATTAATACTCCCTCACTTGGCATGGAGTTTAAAATAGTAAAGAAGACTTCTGAATCTTGTGGCCAAGATGCCCTTTAATCATGTGGTCTTAAACATGTCATGTATAAAGTTACAATTAAAGAGTGGCCAAAAAAGGAAAGAGACATCCTTTTCCAAAAGGACTTAAAGGGAAAGTCACAAACAAATTGAAACTGAGGGAGTACTTAATAATTAAAACTTTCGAAAGAGGACGAAAAAAATGTTGTCGGATATTAATCTTAATTCTCACGCTATATAATTAAACAAATGAGAAAAAAAAGAAAAATGTATGGTTGCAATTATGCTACAACATCCTTTTCATCATCTGCTTAATCAAATTTGTTTTCCATCTACCAGTGCTTTGTAAGGAATTATTTTAATTGTGTTGATTTTCTACCTTTTCTTTTGTATATGAGGTAGCCTCTGACAGTGTACATGTTTATGTAAAAACAAATATCATGGCCTGATTATCTGCACTTTGTAGGTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATGGTAGGCCTAATTTTATGCTTATATCTCTATTTATGTTTCATTTTCTTATCTTGACTGCAAACTACTGAACATTGGGACCATCCTGTGTTGTATATTTTCTCTGCGACTGTTTATTCAGAAGAAGAAACACATCTCTGCTTCTGTGAAAGTAATCCTACAAGATTCAGTAATATAGCATGACAAGTTCATAAAAAACATTTAGTGATCCAATCATCCTGAACCTCTTCATACATGCAGCGGGGAAGGAAAATTTAAGTAGATTGAAACTATCCATGTATTATGGCTACCCATAGGGTTCTAAATATGATTCTCTCTTATAGTATAAAGTAAAGAGTGATCTAGCATGTGAGAAGACGATTTAACTTTTGATTCATATTATTTGGATTTTGCTCAGGTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCAAGGAACAAGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCC</genome_strand>
        <mrna_strand>CGAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCANGAAAC-AGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564454" ref_strand="+" ref_description="SGN-U564454 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>gatttttcagaagacgtaaatatgaacccaaaaatgctcaagggactattaaatctaccccaaacataaggacatttttaccattttgtccaaaatttagtacaaaaataacttggcgcgcagagtgcaaaccctagtccgagctcgtctctcccttaccgcggtgctcgagtgtctcgccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgcccttagcgttcaagtgttgtgaagttgttagatgtggaacagagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaggaaggctagctaatgttgtggataacagtgaaggtcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgacgccacagatttttctgactttgagaaagctcaccataagatgatcgatgtgtcctgggggatcggaggtatcttcattcctgttgtgctgttcatgtcattttgtaactattactatggacaggatgcctcgtctcctgacaagctgtcttttgctgtatgagatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="58854" stop="55792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58555" g_stop="58369" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57147" g_stop="57058" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="277" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56920" g_stop="56336" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="862" r_length="585" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56335" i_stop="56144" i_length="192">
            <donor d_prob="0.640" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56143" g_stop="56092" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="914" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U564454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58555" e_stop="58369"/>
          <exon e_start="57147" e_stop="57058"/>
          <exon e_start="56920" e_stop="56336"/>
          <exon e_start="56143" e_stop="56092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTAGTCCAAAGATGGAAATATTACATCAGTACTCGAAAATTGTTTCAGAGAGCTATGTTAATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGCATCAGACTTCGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGCCCCTTACCCCCAGTACTGCTTAAATGTTATACGCTTTTATTTTTATTTTAAAAAGAGAATAAACAGTCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCCTTATGGTGGAACTTTCTCTATATGGCTTGTATAGTTTGCCTGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATGGTGAGTACTTTTCTTTGTTTTCTATGATTTATTTTACCTAACGTACAGAATAAGTTCCACACTTTTACTTAATATTTTCAAAGTCTATTACGGGATTTAAAAAAAGCAAGAATTTGTAGTCTATCTTGGTGCATGTTAAAGCATGATCTTGTAGAAATATGTCTTTTTATGCTGTTAATTTATCAATTACAGGACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCA</genome_strand>
        <mrna_strand>GATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG.........................................................................................................................................TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATG................................................................................................................................................................................................GACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578370" ref_strand="+" ref_description="SGN-U578370 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|115472733|ref|NP_001059965.1| (e_value=2e-111) Os07g0557100; (*ATH) AT4G05120.1 (e_value=5e-107)  Symbol: None | equilibrative nucleoside transporter, putative (ENT3), identical to putative equilibrative nucleoside transporter ENT3 (Arabidopsis thaliana) GI:16518993; contains similarity to SWISS-PROT:O54699 equilibrative nucleoside transporter 2... ; ">
      <seq>ggaatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgataggaagatacgttccactgattaagaaaatcgagcttcaatcacgcaagggcctcatcattgcaaccctctctcgtttctcgtttatcccttgcttctatttcactgcaaaatatggtgatcaaggctggatgatatttctcgtatccttcttgggactcacaaatggttacctcactgtttgtgtcatgacagctgcacctaaaggatacaagggtcctgaggcaaatgcattgggtaacttgctagtgttattcctactagctggtatattttccggtgttgctttggattggttgtggattattggtaacggaaaattctgagtactcaagattgtatgcgacaggacatttgataacatgtcatcttagttggggaacacataatagttctggttccaaatatgcattttgtgtgaatgttttgctttcttttttcttttttttcatggcaactttcaacttctaggagtataaattgtgaaatctacgtatgtaattattcaacttatttctggattgcaaagaatgtaaagttcaattcacatagaaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61604" stop="59316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61304" g_stop="61260" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="151" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="327" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="488" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60315" g_stop="60057" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="747" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60056" i_stop="59959" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59958" g_stop="59616" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="1090" r_length="343" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U578370" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1090</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61304" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
          <exon e_start="60315" e_stop="60057"/>
          <exon e_start="59958" e_stop="59616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTACCTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTATCCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTGTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAGGTTTGTGAAATTTTAATTTCTGAATCTATACAAATTGTCAGTTTATAATCATCTGAAATATCACATCATATTTTAACACTTAACTTTGAATTTTGTAGGGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGAC</genome_strand>
        <mrna_strand>GGAATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAG..................................................................................................GGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATCTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGGCAACTTTCAACTTCTAGGAGTATAAATTGTGAAATCTACGTATGTAATTATTCAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585430" ref_strand="+" ref_description="SGN-U585430 Tomato 200607#2 [19 ESTs aligned] (*GB) gi|157329572|emb|CAO40679.1| (e_value=6e-110) unnamed; (*ATH) AT4G05150.1 (e_value=7e-77) | Symbol: None | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein, various predicted proteins contains Pfam profile PF00564: PB1 domain | chr4:2660336-2662906 FORWARD | Aliases: C17L7.70, C17L7_70; ">
      <seq>cgatttctttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgccggtccgggtctggagcgtgggcgatccgaagtatcgtctattgtttctgaagttccggattacttgttcgggctggacaattccgatgacccgccccgcgaatcgaaattcgtgaagaacaagataatttcggagccgggctcacccgctccacccattgtttcttctccttattgctctatttcatcatcatcaatgacacctacagcagctatgacagtgatgccggatcttccaccggttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaagcaaagtttcgtgaatggtaaataaattgtagtaattgataatctatcctccaactttaatatgtaagtatttgattagtaaaaaagcatttaagcaaagtaacttctcaatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82941" stop="86722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83239" g_stop="83359" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="86422" g_length="1443"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="1564" r_length="1443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U585430" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83239" e_stop="83359"/>
          <exon e_start="84980" e_stop="86422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTT</genome_strand>
        <mrna_strand>CGATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599748" ref_strand="+" ref_description="SGN-U599748 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157328210|emb|CAO17683.1| (e_value=2e-20) unnamed; (*ATH) AT4G03270.1 (e_value=2e-13)  Symbol: CYCD6;1 | cyclin family protein, similar to CycD3;2 (Lycopersicon esculentum) GI:6434199 ; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain | chr4:1432375-1433691 REVERSE | Aliases: F4C21.20, F4C2... ; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=2e-12) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1; ">
      <seq>cgacgccgtttcagctctctttgccaacgagtccgatcacatgccgtcgtttctcgacttcacatccaccgatgtgcgcttttcccttcgccgccattctgttttccttatttctcaagtacaaagttcttacaaatttgatggctatattgcatacctcgccgtcaattacattgatcgttttctctccaaacaagcagttctggagaataagccatggattgtacggattctcgtcattgttagcctttctcttgccgcaaaaatgaggaacgtcgatttatcactgacggatattcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="91756" stop="92888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="92173" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92174" i_stop="92331" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92332" g_stop="92418" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="205" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92419" i_stop="92492" i_length="74">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92493" g_stop="92588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="301" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U599748" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="92173"/>
          <exon e_start="92332" e_stop="92418"/>
          <exon e_start="92493" e_stop="92588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCAAATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAAGTAAATACTCTTCATAATTTTACACTGCTTTCGTCCTACTCGGTTTTGCATTTTCAGAGTTAAATTGAACTATGTTAACTTTTCTAAAAATCAAAATTATATCAATAGTATAGTAATTTGCAGTTAATTGTAGGTCTAACTGGTTGTGATTTTTGCAGGTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTGGTAAACGGAGTTCATTTCATTCGTGTACTGAAATTGTAGAAAATCTTCTGAGAATTGTATGAAACTTACTTCAGGAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGTCGGATATTCAG</genome_strand>
        <mrna_strand>CGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCACATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAA..............................................................................................................................................................GTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTG..........................................................................GAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGACGGATATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600388" ref_strand="+" ref_description="SGN-U600388 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tttttttcaaagaagctaatgacaatatgtctttattccaaaattcaaacaccctgctaaaatcagcataataacaacgttttctctctctaagccccactcggacattattattcatcactcttagcctctctggaaagtggcaaagctaaatacaggaagcttctcttcttccgccttttttttccctattggcactgactgcacataaaactacaaatttatgtaaatattcagcttcacagtactcccttatctttgttcaccccctccagttccaaagaacaaagattctttgaatagtctataacataaaagtacaaataggcgaattttctctacacaattatgctaatagtgaaacctatagagattgtgcatctaattagttgcaattctacactctgctttagtttagagttcaattcattcaaagatcctccacgtatctgttcccactcgaacaaaactgctatgcatgagacaacaaaatcaatgaaaacaaaatagggacgctggttcactgtcttactatcttagcaccactgaacctgagaaatctggaacgtttgatcatcccttatatcgctcaatctccgctttttgatattgtccttatcctgagtctcgcattgagagcttgtatgttcacactccagaacactttttggcgtcaacttactacagtactccctcccttctatcggcatttcccgcattacagccaaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="94492" stop="93158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94192" g_stop="93458" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U600388" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94192" e_stop="93458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</genome_strand>
        <mrna_strand>TTTTTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566418" ref_strand="+" ref_description="SGN-U566418 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157357615|emb|CAO64588.1| (e_value=0) unnamed; (*ATH) AT1G11290.1 (e_value=9e-168) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:3791454-3793883 REVERSE | Aliases: T28P6.20, T28P6_20; (*SWP) sp|Q3E6Q1|PPR32_ARATH (e_value=8e-167) Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40; ">
      <seq>gctaaatgtgggtcagtgttcactgcttggttggtttttgataagatggaggctaagacggctgtatcattgaatgctatgatagatggatatgcacggaatggatatcacgatgaagctcttatcatctttcagaaaatgttggatgaaggattcaaaccaacgaatgtgactattatgagcactttacatgcgtgtgctgaaacaaggaatattgagcttggacaatatgttcacaaactggtcaaccaactaggtcttggttctaatgttgcagttgttaactcgttgatttcaatgtattgcaagtgccaaagagtggatattgcagctgaattgttcgaaaacttgaaaggaaaaacacttgtttcatggaatgctttgattttgggctatgcacaaaatggatgtgtaatggatgcattaactcatttttgtgaaatgcatctgcagaacatcacacctgattcatttacaatggtaagtgttgttactgctcttgctgagttaatcagtataacgccaagctaagtggatacatggatttgctgtaagaacttgtttgaacgggaatgtttttgtagccactgcacttgttgacatgtatgcaaaatgtggagcagttcacacagcaacaaagctatttgacatgatggatgataggcatgttacaacatggaatgccatgatagatggatatggcacacatggctttggaaaggaagctgttgaattatttgaggaaatgagaaaggggcatgtagagcctaacgacataacatttctctgtgtcatctcagcttgcagccactctggctttgtacacaaggggcgcaactatttcacgatcatgagggaagaatacaacttgcagccttcaatggaccattatggggcaatggttgacctaattggtcgagctggtcggctgagtgaggcttggaacttcattgataatatgcctaccagaccaggactcaatgtctatggtgcaatgttgggagcttgcaagattcacaaaaatgtagaattgggggagaaggcagcagacaaactatttgagctagatcccgatgatggtggatatcatgtgcttcttgctaatatgtacgccacggcttcaatatggcataaagttgctaatgtcagaactatgatggagagaaaaggtattcaaaagacacctggatggagtctagttgatttaagaaacgaggtccacacattctactcaggaagcactagccatcctcagtcagagaagatctatgcttaccttgagaaactgtttgataggattaaagctgctggatatatacctgatactaattcaattcacgatgtggaagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="98081" stop="96128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97781" g_stop="96428" g_length="1354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1355" r_length="1355" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U566418" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1354</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97781" e_stop="96428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATGTGGGTCAGTGGGCACTGCTAGGTTGGTTTTTGATAAGATGGATTCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTTGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTT-ATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAAGAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTAGACAAGGGGCGCAACTATTTCACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTG</genome_strand>
        <mrna_strand>GCTAAATGTGGGTCAGTGTTCACTGCTTGGTTGGTTTTTGATAAGATGGAGGCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTCGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTAATCAGTATAACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAACAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTACACAAGGGGCGCAACTATTTCACGATCATGAGGGAAGAATACAACTTGCAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGAATTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCACGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTAATTCAATTCACGATGTGGAAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563948" ref_strand="+" ref_description="SGN-U563948 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157328541|emb|CAO21252.1| (e_value=7e-72) unnamed; (*ATH) AT1G11380.1 (e_value=7e-73) | Symbol: None | expressed protein, contains Pfam profile PF04749: Protein of unknown function, DUF614 | chr1:3832623-3834189 FORWARD | Aliases: T23J18.4, T23J18_4; ">
      <seq>ggagccaccatatcctcctctaaaaataaaaataaaaatagactataattatgttccacaatatcccttatttaccaaattaactctttatatataaactctgtctcaatctcaactattttaatcatatatctctatatctcttccgttctgctcggcacaaatatttccgcttaatccatactctgttcgtttgtataaactttttgataatttttggaagagtgcagccagataatggatgtgtttgaaaagagagaaatggcggcggagaaagcaagaggaagggaggaggaggaagagggagaggggcagaggttgttgtcggaaggggtgactgtggtggattttgatttgttgtgttccacggtggcgatgcaggcacaaaaggggcagtgggtgaagttaaatttgaatggggatgaagaaaatgctatgggttatgattatggtggaggggttttgaggatgtgggaaggagagcttttttgtgattgtctggaggaccgtcgaattgctgttcaatctgtttgctgcccctggtacagatttggaaagaatatgaagcgttctggtttcggttcctgctttcttcagggctctatttatttcatcctcactcttgttgctctcctaagcattctggctttcattgtcacaaagaagcactgctttttatatgttggtggtgcttttataatattagttggagtatatatgggttatcaccgcacaaaaatgagaaacaagttcaatatcagaggtgatagttctttggatgattgcatcttccatttgacctgtccgtgctgcaccttatctcaggaagctagaacattagagatgaacaatgtccaagatggcatttggcatggtagaggtgataccatatgcgtaggaagttattctgaacctggcaggaccccatttgaactaagtccgcctgctgttgtgtcaacaaagtcctgaaccatgaactctacagagggcttaggacacaaaaaggaatgacaatacggggttagcagttaattctagagtagagcatccttcacattgttctctaccttgaaaagccaagcctacaagcgcggtcctgaattagcaaacattctttttccagaacagaagaatctcattaagacttgcccattcatgatacaaaccaaggtagaaatcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="102475" stop="99101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102176" g_stop="101644" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101643" i_stop="101020" i_length="624">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101019" g_stop="100956" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="597" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100955" i_stop="100586" i_length="370">
            <donor d_prob="0.410" d_score="1.00"/>
            <acceptor a_prob="0.748" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100585" g_stop="100421" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="762" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100045" g_stop="99983" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="825" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99754" g_stop="99401" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="1182" r_length="357" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U563948" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1179</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U563948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102176" e_stop="101644"/>
          <exon e_start="101019" e_stop="100956"/>
          <exon e_start="100585" e_stop="100421"/>
          <exon e_start="100045" e_stop="99983"/>
          <exon e_start="99754" e_stop="99401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATGGTGGAGGGGTTTTGAGGATGTGGGAAGGAGAGCTTTTTTGTGATTGTCTGGAGGACCGTCGAATTGCTGTTCAATCTGTTTGGTAAAGTTTTTTCCTTTTTCTTTTTCTAGATTTTCTGGATTATTTGTTTTCTCATCATTTTCCCATGTGGGTTTTGGTTTTTGTTTTCCCATACTTGTTTTCGTTTCTTTGGTTTTGTTAATGGAAGTTTAAAAACGTTAAGAACTTGGTTTGTTTCTCTCTCCCCGCCGGCCGGTGGAAAACTGGGGGCTGATCTCCCTTCCACCGCCGGCAGGTGAAAAAAGCGCTGTAGCTTTTTAGTTTCAAGCTAAGTTGCGTGCACTCTTCAATTTTTGATGCCGCAATTACTTTTAGAGAATGTGACATGCACCCGTTTGACGAAGAGTCCGAAAAACATAGTTTTCAAGTTGAGATAGAGGAGGGTGGTTGTTTGATTGATTTTTAATTTTATGTAATTTTGTTTCTTTCTTTTGAAAATCCTGGTTTGGCTTTCTCTTGTTGTAATTTCTTTTTTGTGTAATTGTTAGCCTCAAGGCAAATTTGACTTATAGTTGAACAATTCATTTCCTATTATAAATTTGAATGTTTTATTAGCAATAGAACGTTTACTCTAGTTCTTAATTCATCATCAATTTAGTGGTTTGGATTATGATGCTAATTATAATTTCTCTTCATGTATTGCAGCTGCCCCTGGTACAGATTTGGAAAGAATATGAAGCGTTCTGGTTTCGGTTCCTGCTTTCTTCAGGTCTCACATTTAAATCCGTTTTAGTTGTTGACCTACCCCTACCCCCTCAAGTTCTTGGCGATCCCTTGTGGTCAAAGTCATCTTTAAATTGATTTGCTAATTCCTCTTTCTTGATCAACATAGATTGGTTAGGACTAGAAGGGTCTTAATGGTTGTTTATTATATACATATTAATGTGGAAAAAAATACATTGCACTCTTAGTTTCATTACACAAAGTCTGGTATAAATGTTTAATGTTACCTGTTTTTGAAATGTTGGCAAGATTAGATTAGAAGTGAAGAAAATTTTTACTGCTTAGTACTTTAACATTGATTTGTCTGCTTTCCATAAAATACCCGTGCACTGAAACAGATTTATACTGGTCTGCAGGGCTCTATTTATTTCATCCTCACTCTTGTTGCTCTCCTAAGCATTCTGGCTTTCATTGTCACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGAGTGAGTACTTTCATCCCTATTTTCGCTTTTACTGCTACTTTTCAGTTCTTCCTATTTGATCATATTCCAAGAGTTGCACAAACTATTTGTGGGAATTGGTTATATTATCGTATAGCTTGTTATCTTTCTCTAGTTTTAGCAATGATTTCTCTGCATTCCAGTTTTTACAAATAACAATCTATCTTTGGTTTTCCCTTCTTAACCTACCCTCTTTATTGGTTTTTACATTCTCATATCTTCTCTTGTATTTTGAGCTACTGAAACACTGATGAGTGTTAACAATTATGGGAGGACAATAGTATTAATTTTACTTGCATCTATTATTGTTCTTCTTTAACTGTTGTGATAACTCTTGCTCTTTTTATGCTTCTTTAGGGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAGGTTCGTTCTATTATTCAACCTGCATTAATTAACAACAAAGTAGTGTTTATTTGCCTTGTCGCGTGAAGTTGCTTGCTGCTTTTTCTCTCACCCCTCAGTCCCCAGGGGAAGAGCGAATAGGTTGACTCAGAAAAACACCAATCTAACAGGACCTGCAGTTTTTGAAGTTAGATGACACAGTTTGCTTTATTATTCGGTTTTGAATTTTTTTTTTGTTTTATTGAACAGGAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGC-AACATTCTTTTTCCAGAACAGAAGAATCTCATT-AGACTTGCCCATTCATGATACAAACAAGGGTAG-AATCGCG</genome_strand>
        <mrna_strand>GGAGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATGGTGGAGGGGTTTTGAGGATGTGGGAAGGAGAGCTTTTTTGTGATTGTCTGGAGGACCGTCGAATTGCTGTTCAATCTGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCCTGGTACAGATTTGGAAAGAATATGAAGCGTTCTGGTTTCGGTTCCTGCTTTCTTCAG..................................................................................................................................................................................................................................................................................................................................................................................GGCTCTATTTATTTCATCCTCACTCTTGTTGCTCTCCTAAGCATTCTGGCTTTCATTGTCACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA.......................................................................................................................................................................................................................................................................................................................................................................................GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAG....................................................................................................................................................................................................................................GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAAACATTCTTTTTCCAGAACAGAAGAATCTCATTAAGACTTGCCCATTCATGATACAAACCAAGGTAGAAATCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568650" ref_strand="+" ref_description="SGN-U568650 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157330963|emb|CAO62420.1| (e_value=1e-141) unnamed; (*ATH) AT1G61620.1 (e_value=3e-129) | Symbol: None | expressed protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:22741208-22743095 FORWARD | Aliases: T25B24.3, T25B24_3; (*SWP) sp|Q5U3S7|NOSIP_DANRE (e_value=5e-35) Nitric oxide synthase-interacting protein OS=Danio rerio GN=nosip; ">
      <seq>ggcgattggcggccaatcggccgaatccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagtggtttgggcctggtgaggcctgccatgaagacgtaacttgctgtataccagtttgcttattagagatagtggggctttgtatggtgtgttgtaatatggtatatcatcttctaccctgaaaactgagtattttcttgtatcgtctttatttaactgcagctccgcgaaagcaacttatatcctttccaattcactagtaatatttcattctataattgtttgaaacttgttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108946" stop="105637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108646" g_stop="108323" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="347" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="105937" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="1222" r_length="875" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U568650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U568650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108646" e_stop="108323"/>
          <exon e_start="106811" e_stop="105937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTC</genome_strand>
        <mrna_strand>AATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576918" ref_strand="+" ref_description="SGN-U576918 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157328539|emb|CAO21250.1| (e_value=2e-71) unnamed; (*ATH) AT1G11360.2 (e_value=1e-67)  Symbol: None | universal stress protein (USP) family protein, contains Pfam PF00582: universal stress protein family domain; similar to ethylene-responsive ER6 protein (GI:5669654) (Lycopersicon esculentum) | chr1:3821529-3823053 REVERSE | Aliases: ... ; ">
      <seq>ataacctctcttcttccccaaaggtcccaagaactcaaacaatacacaatcgaatcggattcgaacatcacaaaacacacaatatctctctgaattcttcaataccaattccgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatccgaccgcccactcacggcgatcatgcaccaaccggcatctcctcgtttccatttaggaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtccgtccaacttcggtactttatggagctgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctcagccacttgtggaggctaatattccattcaagattcatattgtgaaggatcatgatatgaaggaaaggttgtgtttggaagttgagaggttgggtttgagtgctgttataatgggagtaanaaggtttggtgcatcaaggcgtagcccgaaaggagggatgcttggtagtgtgagtgattattgtgtgcatcattgtggttgcccccgttgttgttgttagatatcctgatgataaagatgctactactggcaatgactcgggtcacagatgtgcttcaccctggtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109662" stop="111036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109961" g_stop="110736" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U576918" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109961" e_stop="110736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAATGGGGAGT-AGAGGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGTTTG-CCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTC-GGTCACAGATGTGCTTCACCCT-GTACCT</genome_strand>
        <mrna_strand>ATAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAAT-GGGAGTAANAAGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGGTTGCCCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTCGGGTCACAGATGTGCTTCACCCTGGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570381" ref_strand="-" ref_description="SGN-U570381 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ggtccaaacacattcagttaagaaaggtgctggacaaaacagcggtgcaactaaaaatggaaaaacagaaaaccaagtggtggcaacaaaaaagagggaaaagaagaaaccccttcctagagaggaaattgcaaaagctagggagcagaagaggaaagctacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="114296" stop="113081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113997" g_stop="113857" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113856" i_stop="113750" i_length="107">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113749" g_stop="113381" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="511" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-U570381" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570381" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113997" e_stop="113857"/>
          <exon e_start="113749" e_stop="113381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGC-ACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG...........................................................................................................GGAGCAGAAGAGGAAAGCTACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596812" ref_strand="+" ref_description="SGN-U596812 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gttttctaaagcataatcatactcgtcctccagctgtcttcatctcaaagtcatcaaccaataccaaaaatagttacaactagctggcaggtgctaataatacgcgaggtgagctttcacaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="113195" stop="113922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113495" g_stop="113622" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-U596812" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>128</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113495" e_stop="113622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTAAAGCAAAATCATACACGACCTCCAGCTCTCTTCATCTCAAAGTCATCAACCAATAACAAAAATA-TTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</genome_strand>
        <mrna_strand>GTTTTCTAAAGCATAATCATACTCGTCCTCCAGCTGTCTTCATCTCAAAGTCATCAACCAATACCAAAAATAGTTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6614" PGL_stop="7183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6614" e_stop="7183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6614" e_stop="7183" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6614" stop="7183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTCCCCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</gDNA_template>
            <first_frame> K  N  F  F  P  *  F  Q  D  F  L  F  V  S  L  T  V  K  L  S  P  P  K  L  L  Q  L  *  R  Y  *  C  W  *  A  S  F  R  Y  L  F  H  C  V  Q  W  V  F  F  K  S  H  V  H  *  N  N  I  L  E  E  G  D  S  M  R  Y  F  S  V  C  Y  S  S  M  S  V  H  I  S  E  T  I  *  V  E  F  I  I  P  E  T  I  *  S  G  Y  *  L  N  *  L  S  S  S  Y  L  Y  N  I  R  F  L  L  Y  L  K  K  L  I  I  H  S  S  L  L  D  F  F  D  H  T  L  F  Q  L  L  K  S  I  *  D  D  Y  I  C  H  *  S  A  *  L  V  L  *  S  T  T  K  H  Q  H  T  L  L  L  C  R  K  F  V  F  *  Q  Y  F  V  I  S  L  C  G  I  I  I  I  *  F  I  F </first_frame>
            <second_frame>  R  T  F  F  L  D  F  R  I  S  Y  L  C  L  *  L  L  S  F  P  H  Q  N  C  C  N  Y  R  D  T  S  A  G  R  H  L  S  D  T  Y  F  I  V  Y  N  G  F  S  S  K  V  M  F  T  R  I  I  F  W  R  R  G  T  L  C  D  I  L  V  S  A  I  L  Q  C  Q  S  T  Y  L  K  L  F  E  *  S  S  *  Y  L  K  L  F  D  Q  D  I  D  *  I  S  C  L  R  V  T  Y  I  T  S  D  S  C  Y  T  *  K  S  L  *  S  T  V  R  Y  L  T  S  L  T  T  H  Y  F  S  Y  *  N  P  S  K  M  I  I  F  V  I  D  L  L  D  *  S  C  E  A  P  Q  N  T  N  T  P  F  F  C  V  G  N  L  F  F  S  S  I  L  L  L  A  Y  V  E  L  S  L  S  N  S  F   </second_frame>
            <third_frame>   E  L  F  S  L  I  S  G  F  L  I  C  V  S  N  C  *  A  F  P  T  K  I  A  A  T  I  E  I  L  V  L  V  G  I  F  Q  I  L  I  S  L  C  T  M  G  F  L  Q  K  S  C  S  L  E  *  Y  S  G  G  G  G  L  Y  A  I  F  *  C  L  L  F  F  N  V  S  P  H  I  *  N  Y  L  S  R  V  H  N  T  *  N  Y  L  I  R  I  L  I  K  L  V  V  F  E  L  L  I  *  H  Q  I  L  V  I  L  E  K  A  Y  N  P  Q  F  V  T  *  L  L  *  P  H  I  I  S  V  I  E  I  H  L  R  *  L  Y  L  S  L  I  C  L  I  S  L  V  K  H  H  K  T  P  T  H  P  S  S  V  *  E  I  C  F  L  A  V  F  C  Y  *  L  M  W  N  Y  H  Y  L  I  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6660" stop="6869"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFPHQNCCNYRDTSAGRHLSDTYFIVYNGFSSKVMFTRIIFWRRGTLCDILVSAILQCQSTYLKLFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19609" PGL_stop="20974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19609" e_stop="19665"/>
            <exon e_start="19763" e_stop="19892"/>
            <exon e_start="20046" e_stop="20974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19609" e_stop="19665" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19763" e_stop="19892" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="20046" e_stop="20974" e_length="929"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19609" stop="19665"/>
              <exon start="19763" stop="19892"/>
              <exon start="20046" stop="20974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTCTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTCGAATTTATCGACACCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  S  Q  I  I  F  K  K  I  K  *  F  A  K  T  N  C  H  K  W  S  K  I  T  K  F  K  I  F  Q  L  *  V  Q  P  H  V  F  H  F  L  V  M  K  L  N  S  C  S  H  Q  L  Q  Q  K  *  R  I  S  H  Q  I  L  K  T  L  V  T  H  K  I  I  V  K  L  L  M  M  M  S  G  N  *  A  M  V  *  R  M  I  I  F  L  Y  K  T  M  G  T  M  I  L  *  R  P  M  K  T  T  T  I  L  I  S  S  Q  L  F  C  R  I  Y  R  H  L  H  Q  V  L  R  H  *  I  Q  I  Q  L  T  S  T  I  A  A  A  Q  L  L  K  M  K  E  I  A  T  A  A  T  C  *  T  L  I  I  F  Q  I  S  G  I  L  L  M  N  L  C  N  F  Y  A  F  F  F  L  K  E  Q  T  N  S  S  K  E  V  F  Y  F  F  F  L  P  L  S  F  W  T  C  C  C  F  L </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N  P  K  *  S  S  R  K  S  N  N  L  P  K  P  I  A  T  N  G  P  K  *  P  N  S  R  F  F  N  Y  K  Y  N  P  M  C  S  I  F  *  S  *  S  S  T  H  A  A  T  N  Y  N  K  N  R  G  F  L  I  R  S  *  K  L  W  *  L  T  K  *  L  S  S  Y  *  *  *  *  V  A  I  K  Q  W  C  N  G  *  L  F  S  F  T  K  L  W  V  L  *  S  S  N  V  R  *  K  Q  Q  Q  F  *  S  P  V  S  C  F  V  E  F  I  D  T  F  I  K  S  Y  A  I  E  F  K  F  N  L  L  Q  Q  *  Q  Q  H  N  Y  *  R  *  K  R  *  L  L  Q  Q  H  V  E  L  *  *  Y  S  K  Y  L  G  Y  Y  *  *  I  Y  V  I  F  T  L  F  F  F  *  R  N  K  Q  T  V  R  K  R  C  F  I  F  F  F  Y  L  *  A  F  G  H  V  V  V  S   </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L  I  P  N  N  L  Q  E  N  Q  I  I  C  Q  N  Q  L  P  Q  M  V  Q  N  N  Q  I  Q  D  F  S  T  I  S  T  T  P  C  V  P  F  S  S  H  E  A  Q  L  M  Q  P  P  I  T  T  K  I  E  D  F  S  S  D  L  E  N  F  G  N  S  Q  N  N  C  Q  V  I  N  D  D  E  W  Q  L  S  N  G  V  T  D  D  Y  F  P  L  Q  N  Y  G  Y  Y  D  P  L  T  S  D  E  N  N  N  N  F  N  L  Q  S  V  V  L  S  N  L  S  T  P  S  S  S  P  T  P  L  N  S  N  S  T  Y  F  N  N  S  S  S  T  T  T  E  D  E  R  D  S  Y  C  S  N  M  L  N  F  D  N  I  P  N  I  W  D  T  T  N  E  F  M  *  F  L  R  F  F  F  F  K  G  T  N  K  Q  F  E  R  G  V  L  F  F  F  F  T  S  E  L  L  D  M  L  L  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19611" stop="19665"/>
                    <exon start="19763" stop="19892"/>
                    <exon start="20046" stop="20871"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFLIPNNLQENQIICQNQLPQMVQNNQIQDFSTISTTPCVPFSSHEAQLMQPPITTKIEDFSSDLENFGNSQNNCQVINDDEWQLSNGVTDDYFPLQNYGYYDPLTSDENNNNFNLQSVVLSNLSTPSSSPTPLNSNSTYFNNSSSTTTEDERDSYCSNMLNFDNIPNIWDTTNEFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35137" PGL_stop="36245"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35137" e_stop="35343"/>
            <exon e_start="35492" e_stop="35553"/>
            <exon e_start="35687" e_stop="35727"/>
            <exon e_start="35867" e_stop="36245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.387" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="35137" e_stop="35343" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.387" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35344" i_stop="35491" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35492" e_stop="35553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35554" i_stop="35686" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35687" e_stop="35727" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35728" i_stop="35866" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="35867" e_stop="36245" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35137" stop="35343"/>
              <exon start="35492" stop="35553"/>
              <exon start="35687" stop="35727"/>
              <exon start="35867" stop="36245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTT : GTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTG : GATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAG : GGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTTATGTGAGGTGCATTATATTTATAAGAATATGTGCATGTGCTGTTTGATATC</gDNA_template>
            <first_frame> T  S  A  R  S  V  D  P  L  V  V  G  K  V  I  G  D  V  L  D  M  F  V  P  V  V  D  F  T  V  E  Y  A  S  K  Q  I  S  N  N  G  V  E  I  K  P  A  E  A  A  Q  K  P  R  V  H  I  K  G  S  L  H  S  N  N  L  Y  T  L  :  V  M  A  D  P  D  A  P  S  P  S  E  P  T  F  R  E  W  L  H  W :   I  V  T  D  I  P  E  G  G  D  A  S  Q   : G  R  E  M  V  E  Y  M  G  P  K  P  P  A  G  I  H  R  Y  V  F  T  L  F  R  Q  K  E  A  E  Q  V  P  H  K  P  P  Q  G  R  S  N  F  K  T  R  Q  F  A  S  D  N  G  L  D  L  P  V  A  A  L  Y  F  N  S  Q  K  E  H  A  A  H  H  *  L  F  T  M  C  A  A  I  Y  S  N  V  I  T  T  L  C  L  L  A  S  I  A  S  A  L  H  I  *  S  Y  V  Y  L  C  L  C  E  V  H  Y  I  Y  K  N  M  C  M  C  C  L  I   </first_frame>
            <second_frame>  L  R  R  G  R  *  I  L  *  W  S  E  R  *  S  E  M  F  W  T  C  L  F  R  W  L  T  L  R  W  S  M  L  P  N  K  Y  R  I  M  E  L  K  L  S  Q  Q  K  L  H  K  S  L  E  F  I  *  R  V  L  F  I  L  I  I  F  T  P  L :   L  W  L  I  Q  M  L  L  V  Q  V  N  R  L  L  E  N  G  S  I   : G  L  S  R  I  F  L  R  E  V  M  P  L  K  :  G  G  R  W  W  N  I  W  D  R  S  H  R  Q  G  Y  I  D  T  C  S  L  C  L  G  R  R  R  R  S  K  C  P  I  N  H  H  K  G  D  P  I  S  R  L  D  S  L  Q  V  T  M  D  L  I  F  L  W  L  H  C  T  L  I  H  K  R  N  M  L  L  I  T  S  S  L  Q  C  V  L  L  Y  I  A  M  *  L  L  P  Y  A  C  *  L  V  L  Q  V  L  C  I  Y  R  V  M  Y  T  C  V  Y  V  R  C  I  I  F  I  R  I  C  A  C  A  V  *  Y  </second_frame>
            <third_frame>   F  G  E  V  G  R  S  S  S  G  R  K  G  D  R  R  C  F  G  H  V  C  S  G  G  *  L  Y  G  G  V  C  F  Q  T  N  I  E  *  W  S  *  N  *  A  S  R  S  C  T  K  A  *  S  S  Y  K  G  F  S  S  F  *  *  S  L  H  P   : C  Y  G  *  S  R  C  S  *  S  K  *  T  D  F  *  R  M  A  P  L  :  D  C  H  G  Y  S  *  G  R  *  C  L  S  R :   E  G  D  G  G  I  Y  G  T  E  A  T  G  R  D  T  S  I  R  V  H  S  V  *  A  E  G  G  G  A  S  A  P  *  T  T  T  R  A  I  Q  F  Q  D  S  T  V  C  K  *  Q  W  T  *  S  S  C  G  C  T  V  L  *  F  T  K  G  T  C  C  S  S  L  A  L  Y  N  V  C  C  Y  I  *  Q  C  N  Y  Y  L  M  L  V  S  *  Y  C  K  C  F  A  Y  I  E  L  C  I  L  V  F  M  *  G  A  L  Y  L  *  E  Y  V  H  V  L  F  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35137" stop="35343"/>
                    <exon start="35492" stop="35553"/>
                    <exon start="35687" stop="35727"/>
                    <exon start="35867" stop="36087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSARSVDPLVVGKVIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSLHSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGGDASQGREMVEYMGPKPPAGIHRYVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEHAAHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="39188" PGL_stop="36790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39188" e_stop="39110"/>
            <exon e_start="39021" e_stop="38949"/>
            <exon e_start="38871" e_stop="38786"/>
            <exon e_start="37582" e_stop="37463"/>
            <exon e_start="37154" e_stop="36790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.507" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39188" e_stop="39110" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="39109" i_stop="39022" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39021" e_stop="38949" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.897">
            <gDNA_intron_boundary i_start="38948" i_stop="38872" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38871" e_stop="38786" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.507">
            <gDNA_intron_boundary i_start="38785" i_stop="37583" i_length="1203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37582" e_stop="37463" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37462" i_stop="37155" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37154" e_stop="36790" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39188" stop="39110"/>
              <exon start="39021" stop="38949"/>
              <exon start="38871" stop="38786"/>
              <exon start="37582" stop="37463"/>
              <exon start="37154" stop="36790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582342" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAA : GTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCG : ATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAG : TCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAG : GTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</gDNA_template>
            <first_frame> R  R  C  P  K  A  S  R  V  P  Q  K  A  F  *  R  V  H  L  N  A  W  L  F  Q  T   : S  C  S  P  N  S  *  S  K  F  L  L  *  C  I  P  Q  N  E  A  *  G  G  I  R :   C  S  T  L  D  F  *  T  T  S  W  R  S  Y  Y  H  P  C  W  M  S  I  S  S  Q  T  T  *   : V  M  Y  Q  R  C  F  A  L  H  L  P  *  K  R  R  *  M  Y  K  R  N  *  *  N  S  S  T  S  *  A  P  Q  G  Q  G  K  S  A  G   : G  E  E  N  G  Y  L  W  D  E  E  C  N  C  R  N  S  Q  P  H  A  *  Q  T  V  L  L  K  D  D  R  Q  N  *  F  D  A  D  L  V  D  F  A  G  S  C  L  H  T  A  R  E  *  N  L  V  L  F  Y  D  K  G  G  M  T  G  Y  *  L  L  K  I  F  V  T  W  Q  R  F  T  Y  V  Y  I  C  *  N  H  *  G  V  T  H  R  S  T  Q  *  Q  I  *  L  I  K  R  Q  C  K  H  M  L  L  F  N  T  A  F  Y  M  L  *  * </first_frame>
            <second_frame>  E  D  V  P  K  L  L  E  Y  L  K  R  H  S  S  E  F  T  S  M  R  G  Y  S  K  Q  :  V  V  H  P  I  L  D  Q  S  F  F  F  D  A  F  H  K  M  R  L  K  E  E  F   : D  V  Q  P  W  T  F  E  Q  H  L  G  E  A  I  I  I  P  A  G  C  P  Y  Q  V  K  Q  L  K  :  S  C  I  N  V  V  L  H  F  I  S  P  E  N  V  A  E  C  I  N  V  T  D  E  I  R  L  L  P  E  H  H  K  A  R  G  K  V  L  E  :  V  K  K  M  V  I  C  G  M  K  N  A  I  A  E  I  R  N  L  T  H  S  K  Q  S  S  *  K  M  I  D  K  T  D  L  M  Q  I  S  *  T  L  Q  V  R  A  Y  I  L  L  G  S  R  I  *  F  F  F  M  T  K  E  G  *  L  D  T  D  C  L  R  S  L  S  L  G  K  D  L  L  M  C  I  Y  V  R  T  I  K  V  *  L  I  D  L  L  S  D  R  F  N  S  *  K  G  N  V  N  I  C  Y  Y  L  I  L  H  S  T  C  F  D   </second_frame>
            <third_frame>   K  M  S  Q  S  F  *  S  T  S  K  G  I  L  A  S  S  P  Q  C  V  V  I  P  N  K :   L  F  T  Q  F  L  I  K  V  S  S  L  M  H  S  T  K  *  G  L  R  R  N  S  :  M  F  N  L  G  L  L  N  N  I  L  E  K  L  L  S  S  L  L  D  V  H  I  K  S  N  N  L  S :   H  V  S  T  L  F  C  T  S  S  P  L  K  T  S  L  N  V  *  T  *  L  M  K  F  V  Y  F  L  S  T  T  R  P  G  E  K  C  W  R :   *  R  K  W  L  S  V  G  *  R  M  Q  L  Q  K  F  A  T  S  R  I  A  N  S  P  L  E  R  *  *  T  K  L  I  *  C  R  S  R  R  L  C  R  F  V  L  T  Y  C  *  G  V  E  S  S  S  F  L  *  Q  R  R  D  D  W  I  L  I  A  *  D  L  C  H  L  A  K  I  Y  L  C  V  Y  M  L  E  P  L  R  C  N  S  *  I  Y  S  V  T  D  L  T  H  K  K  A  M  *  T  Y  A  T  I  *  Y  C  I  L  H  A  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39187" stop="39110"/>
                    <exon start="39021" stop="38949"/>
                    <exon start="38871" stop="38786"/>
                    <exon start="37582" stop="37463"/>
                    <exon start="37154" stop="37074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDVPKLLEYLKRHSSEFTSMRGYSKQVVHPILDQSFFFDAFHKMRLKEEFDVQPWTFEQHLGEAIIIPAGCPYQVKQLKSCINVVLHFISPENVAECINVTDEIRLLPEHHKARGKVLEVKKMVICGMKNAIAEIRNLTHSKQSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="42350" PGL_stop="39549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42350" e_stop="42108"/>
            <exon e_start="40358" e_stop="40029"/>
            <exon e_start="39634" e_stop="39549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42350" e_stop="42108" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42107" i_stop="40359" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40358" e_stop="40029" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.743" acc_prob="0.970">
            <gDNA_intron_boundary i_start="40028" i_stop="39635" i_length="394"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="39634" e_stop="39549" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42350" stop="42108"/>
              <exon start="40358" stop="40029"/>
              <exon start="39634" stop="39549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAG : GTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATG : GTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCAAGGAACAAGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCC</gDNA_template>
            <first_frame> R  N  S  R  D  K  F  L  Y  S  P  S  I  N  N  L  R  E  E  N  L  E  H  F  Q  K  H  W  G  E  G  H  P  I  I  V  R  N  V  L  R  N  S  S  N  L  S  W  D  P  V  V  M  F  C  T  Y  L  E  K  R  S  K  C  S  L  D  K  E  T  A  K  A  Q  N  H  S  D  W  C  E  :  V  E  I  A  R  K  Q  I  F  M  G  S  L  E  W  Q  T  H  A  T  M  Q  R  E  I  V  K  F  K  A  W  L  S  S  H  L  F  Q  E  Q  F  P  G  H  H  A  E  I  L  Q  A  I  P  L  Q  E  Y  M  N  P  K  S  G  L  L  N  L  A  V  K  L  P  P  E  M  P  Q  T  D  L  G  P  S  I  Y  I  S  Y  G  G  P  E  E  L  S  Q  A  E  F  I  S  N  L  C  C  E  S  Y  D  M  :  V  N  I  L  A  S  A  T  D  V  L  A  S  K  E  Q  V  R  K  I  K  C  L  M  K  N  K  K   </first_frame>
            <second_frame>  E  I  R  G  I  S  F  C  I  V  H  L  *  I  I  F  V  R  K  T  L  N  T  F  R  N  T  G  V  K  V  I  L  L  *  Y  G  M  C  F  G  I  L  L  I  C  L  G  I  Q  L  L  C  S  A  L  T  L  R  K  G  Q  N  V  P  W  I  K  K  Q  L  R  H  K  I  T  R  T  G  V  R :   W  K  *  L  E  N  R  Y  L  W  G  H  L  N  G  K  H  M  Q  Q  C  S  V  K  *  *  N  S  K  H  G  F  L  P  I  Y  S  K  S  N  F  L  V  T  M  L  R  S  C  R  L  Y  H  Y  K  S  I  *  I  Q  N  L  V  F  *  I  *  Q  L  N  C  H  R  K  C  H  K  L  I  *  D  L  Q  S  I  F  P  M  V  G  L  K  N  Y  H  K  Q  N  L  S  L  T  Y  V  V  N  H  M  I  W :   L  I  F  L  Q  V  L  L  M  F  L  L  P  R  N  K  *  E  K  *  N  V  *  *  K  I  R  S  </second_frame>
            <third_frame>   K  F  E  G  *  V  S  V  *  S  I  Y  K  *  S  S  *  G  K  P  *  T  L  S  E  T  L  G  *  R  S  S  Y  Y  S  T  E  C  A  S  E  F  F  *  F  V  L  G  S  S  C  Y  V  L  H  L  P  *  E  K  V  K  M  F  L  G  *  R  N  S  *  G  T  K  S  L  G  L  V  *   : G  G  N  S  *  K  T  D  I  Y  G  V  T  *  M  A  N  T  C  N  N  A  A  *  N  S  K  I  Q  S  M  A  F  F  P  S  I  P  R  A  I  S  W  S  P  C  *  D  L  A  G  Y  T  T  T  R  V  Y  E  S  K  I  W  S  S  K  S  S  S  *  I  A  T  G  N  A  T  N  *  F  R  T  F  N  L  Y  F  L  W  W  A  *  R  T  I  T  S  R  I  Y  L  *  P  M  L  *  I  I  *  Y   : G  *  Y  S  C  K  C  Y  *  C  S  C  F  Q  G  T  S  K  K  N  K  M  F  N  E  K  *  E  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42350" stop="42108"/>
                    <exon start="40358" stop="40029"/>
                    <exon start="39634" stop="39551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNSRDKFLYSPSINNLREENLEHFQKHWGEGHPIIVRNVLRNSSNLSWDPVVMFCTYLEKRSKCSLDKETAKAQNHSDWCEVEIARKQIFMGSLEWQTHATMQREIVKFKAWLSSHLFQEQFPGHHAEILQAIPLQEYMNPKSGLLNLAVKLPPEMPQTDLGPSIYISYGGPEELSQAEFISNLCCESYDMVNILASATDVLASKEQVRKIKCLMKNKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="58555" PGL_stop="56092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58555" e_stop="58369"/>
            <exon e_start="57147" e_stop="57058"/>
            <exon e_start="56920" e_stop="56336"/>
            <exon e_start="56143" e_stop="56092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="0.995"/>
          <exon-intron don_prob="0.979" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.640" acc_prob="0.998" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="58555" e_stop="58369" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57147" e_stop="57058" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.897">
            <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="56920" e_stop="56336" e_length="585"/>
          </exon>
          <intron i_serial="3" don_prob="0.640" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56335" i_stop="56144" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56143" e_stop="56092" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58555" stop="58369"/>
              <exon start="57147" stop="57058"/>
              <exon start="56920" stop="56336"/>
              <exon start="56143" stop="56092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG : GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG : TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATG : GACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCA</gDNA_template>
            <first_frame> Y  F  S  E  D  V  N  M  N  P  K  M  L  K  G  L  L  N  L  P  Q  T  *  G  H  F  Y  H  F  V  Q  N  L  V  Q  K  *  L  G  A  Q  S  A  N  P  S  P  S  S  S  L  P  Y  R  G  A  R  V  S  R  R  V   : G  H  R  E  I  D  D  I  G  S  L  Q  H  I  G  F  L  M  A  G  T  E  H  I  T  I  D  C  I  E   : V  P  S  R  P  *  R  S  S  V  V  K  L  L  D  V  E  R  R  R  N  A  L  N  Q  M  N  W  D  L  E  R  Q  A  L  E  V  V  S  K  L  E  Q  H  T  L  F  L  F  A  W  T  G  G  I  S  I  Y  L  T  T  S  I  P  S  A  M  A  F  A  M  S  I  L  L  M  C  L  F  L  A  D  S  F  I  H  I  G  M  A  K  S  R  I  T  K  M  N  V  L  I  M  N  L  M  R  S  Y  K  Y  L  R  E  E  T  R  N  L  M  E  F  D  R  S  K  K  G  R  L  A  N  V  V  D  N  S  E  G  P  V  M  D  M  D  S  F  I  A  R  T  K  T  I  C  D  D  A  T  D  F  S  D  F  E  K  A  H  H  K  M  I  D  V  S  W  G  I  G  G  I  F  I  P  V  V  L  F  M  S  F  C  N  Y  Y  Y   : G  Q  D  A  S  S  P  D  K  L  S  F  A  V  *  D  V   </first_frame>
            <second_frame>  I  F  Q  K  T  *  I  *  T  Q  K  C  S  R  D  Y  *  I  Y  P  K  H  K  D  I  F  T  I  L  S  K  I  *  Y  K  N  N  L  A  R  R  V  Q  T  L  V  R  A  R  L  S  L  T  A  V  L  E  C  L  A  E  L  :  D  I  E  K  L  M  I  L  E  V  F  N  I  L  V  S  S  W  L  E  Q  N  I  *  L  L  I  V  L  K  :  S  L  H  A  L  S  V  Q  V  L  *  S  C  *  M  W  N  G  E  G  M  H  *  I  K  *  T  G  T  W  N  D  K  H  L  R  L  Y  L  N  *  S  S  I  P  S  F  F  S  H  G  Q  E  E  L  V  S  T  *  P  P  V  Y  L  L  L  W  P  L  P  C  L  F  Y  *  C  V  Y  F  W  L  I  R  S  Y  T  L  A  W  Q  N  Q  E  L  Q  K  *  T  C  S  S  *  I  *  C  E  V  I  N  I  *  E  K  K  Q  E  I  *  W  N  L  T  E  A  R  K  E  G  *  L  M  L  W  I  T  V  K  V  L  S  W  T  W  T  L  L  L  P  E  L  R  L  F  V  M  T  P  Q  I  F  L  T  L  R  K  L  T  I  R  *  S  M  C  P  G  G  S  E  V  S  S  F  L  L  C  C  S  C  H  F  V  T  I  T  M  :  D  R  M  P  R  L  L  T  S  C  L  L  L  Y  E  M  F  </second_frame>
            <third_frame>   F  F  R  R  R  K  Y  E  P  K  N  A  Q  G  T  I  K  S  T  P  N  I  R  T  F  L  P  F  C  P  K  F  S  T  K  I  T  W  R  A  E  C  K  P  *  S  E  L  V  S  P  L  P  R  C  S  S  V  S  P  S  W :   T  *  R  N  *  *  Y  W  K  S  S  T  Y  W  F  P  H  G  W  N  R  T  Y  N  Y  *  L  Y  *  S :   P  F  T  P  L  A  F  K  C  C  E  V  V  R  C  G  T  E  K  E  C  I  K  S  N  E  L  G  L  G  T  T  S  T  *  G  C  I  *  T  R  A  A  Y  P  L  S  F  R  M  D  R  R  N  *  Y  L  P  N  H  Q  Y  T  F  C  Y  G  L  C  H  V  Y  S  I  D  V  F  I  F  G  *  F  V  H  T  H  W  H  G  K  I  K  N  Y  K  N  E  R  A  H  H  E  F  D  A  K  L  *  I  F  K  R  R  N  K  K  S  N  G  I  *  P  K  Q  E  R  K  A  S  *  C  C  G  *  Q  *  R  S  C  H  G  H  G  L  F  Y  C  Q  N  *  D  Y  L  *  *  R  H  R  F  F  *  L  *  E  S  S  P  *  D  D  R  C  V  L  G  D  R  R  Y  L  H  S  C  C  A  V  H  V  I  L  *  L  L  L  W :   T  G  C  L  V  S  *  Q  A  V  F  C  C  M  R  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56903" stop="56336"/>
                    <exon start="56143" stop="56100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSVVKLLDVERRRNALNQMNWDLERQALEVVSKLEQHTLFLFAWTGGISIYLTTSIPSAMAFAMSILLMCLFLADSFIHIGMAKSRITKMNVLIMNLMRSYKYLREETRNLMEFDRSKKGRLANVVDNSEGPVMDMDSFIARTKTICDDATDFSDFEKAHHKMIDVSWGIGGIFIPVVLFMSFCNYYYGQDASSPDKLSFAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61304" PGL_stop="59616"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61304" e_stop="61260"/>
            <exon e_start="61179" e_stop="61074"/>
            <exon e_start="60984" e_stop="60809"/>
            <exon e_start="60722" e_stop="60562"/>
            <exon e_start="60315" e_stop="60057"/>
            <exon e_start="59958" e_stop="59616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.510" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61304" e_stop="61260" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61179" e_stop="61074" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.510">
            <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60984" e_stop="60809" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60722" e_stop="60562" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60315" e_stop="60057" e_length="259"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60056" i_stop="59959" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="59958" e_stop="59616" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61304" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60562"/>
              <exon start="60315" stop="60057"/>
              <exon start="59958" stop="59616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA : TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA : TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA : GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG : GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAG : GGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGAC</gDNA_template>
            <first_frame> G  M  V  G  D  I  A  F  M  C  P  E  F  M  Q  :  S  F  F  G  G  V  A  A  S  G  A  L  T  S  G  L  R  L  I  T  K  A  A  F  E  N  S  N  N  G  L  R  K  G  V   : M  L  F  L  A  I  S  A  F  F  E  F  L  C  I  L  L  Y  S  F  V  F  P  K  L  P  I  V  K  H  Y  R  S  K  A  A  A  E  G  S  T  T  V  A  A  D  L  A  A  A  G  I  G  I  Q  P  M  E  K  :  A  N  N  D  A  K  Q  S  E  R  L  T  T  K  Q  L  L  L  Q  N  I  D  Y  E  L  N  L  Y  L  I  Y  V  L  T  L  S  I  F  P  G  F  L  Y  E  N  T  G  T  H  Q  L  G  S  W :   Y  P  L  V  L  I  A  M  Y  N  V  W  D  L  I  G  R  Y  V  P  L  I  K  K  I  E  L  Q  S  R  K  G  L  I  I  A  T  L  S  R  F  S  F  I  P  C  F  Y  F  T  A  K  Y  G  D  Q  G  W  M  I  F  L  V  S  F  L  G  L  T  N  G  Y  L  T  V  C  V  M  T  A  A  P  K  G  Y  K  :  G  P  E  A  N  A  L  G  N  L  L  V  L  F  L  L  A  G  I  F  S  G  V  A  L  D  W  L  W  I  I  G  N  G  K  F  *  V  L  K  I  V  C  D  R  T  F  D  N  M  S  F  *  L  G  N  T  *  *  F  W  F  Q  I  C  I  L  C  E  C  F  A  F  F  F  L  F  F  H  V  N  F  Q  L  L  G  V  *  I  V  K  S  T  Y  V  I  I  *  L  I  S  G  L  Q  R  M  *  S  S  I  H  I  E  R  </first_frame>
            <second_frame>  E  W  L  E  I  *  L  S  C  A  P  S  L  C  N :   R  F  L  V  V  L  L  H  L  V  H  L  P  L  V  *  G  *  *  P  K  Q  L  L  K  T  V  T  M  A  F  A  K  E  L  :  C  C  S  L  L  S  P  H  S  L  N  S  Y  A  S  F  Y  I  H  S  Y  S  L  S  Y  Q  L  *  S  T  T  V  Q  R  Q  L  Q  K  D  Q  Q  L  L  Q  L  T  W  L  L  Q  A  L  E  F  N  Q  W  K  K :   L  T  T  M  L  S  N  Q  N  V  *  P  P  N  N  C  F  S  R  T  L  I  M  N  *  T  C  T  *  F  M  S  S  L  Y  L  F  S  P  D  S  C  M  K  T  L  V  L  T  N  W  D  H   : G  T  L  *  F  *  *  Q  C  T  M  F  G  I  *  *  E  D  T  F  H  *  L  R  K  S  S  F  N  H  A  R  A  S  S  L  Q  P  S  L  V  S  R  L  S  L  A  S  I  S  L  Q  N  M  V  I  K  A  G  *  Y  F  S  Y  P  S  W  D  S  Q  M  V  T  S  L  F  V  S  *  Q  L  H  L  K  D  T  R :   V  L  R  Q  M  H  W  V  T  C  *  C  Y  S  Y  *  L  V  Y  F  P  V  L  L  W  I  G  C  G  L  L  V  T  E  N  S  E  Y  S  R  L  Y  A  T  G  H  L  I  T  C  H  F  S  W  G  T  H  N  S  S  G  S  K  Y  A  F  C  V  N  V  L  L  S  F  F  F  F  F  M  S  T  F  N  F  *  E  Y  E  L  *  N  L  R  M  *  L  F  N  L  F  L  D  C  K  E  C  K  V  Q  F  T  *  K  D </second_frame>
            <third_frame>   N  G  W  R  Y  S  F  H  V  P  R  V  Y  A   : I  V  F  W  W  C  C  C  I  W  C  T  Y  L  W  F  K  A  N  N  Q  S  S  F  *  K  Q  *  Q  W  P  S  Q  R  S  Y :   V  V  P  C  Y  L  R  I  L  *  I  P  M  H  P  S  I  F  I  R  I  P  *  A  T  N  C  E  A  L  P  F  K  G  S  C  R  R  I  N  N  C  C  S  *  L  G  C  C  R  H  W  N  S  T  N  G  K   : S  *  Q  R  C  *  A  I  R  T  S  D  H  Q  T  I  A  S  P  E  H  *  L  *  I  E  L  V  L  D  L  C  P  H  F  I  Y  F  P  R  I  L  V  *  K  H  W  Y  S  P  I  G  I  M  :  V  P  S  S  S  D  S  N  V  Q  C  L  G  S  D  R  K  I  R  S  T  D  *  E  N  R  A  S  I  T  Q  G  P  H  H  C  N  P  L  S  F  L  V  Y  P  L  L  L  F  H  C  K  I  W  *  S  R  L  D  D  I  S  R  I  L  L  G  T  H  K  W  L  P  H  C  L  C  H  D  S  C  T  *  R  I  Q   : G  S  *  G  K  C  I  G  *  L  A  S  V  I  P  T  S  W  Y  I  F  R  C  C  F  G  L  V  V  D  Y  W  *  R  K  I  L  S  T  Q  D  C  M  R  Q  D  I  *  *  H  V  I  L  V  G  E  H  I  I  V  L  V  P  N  M  H  F  V  *  M  F  C  F  L  F  S  F  F  S  C  Q  L  S  T  S  R  S  M  N  C  E  I  Y  V  C  D  Y  L  T  Y  F  W  I  A  K  N  V  K  F  N  S  H  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61304" stop="61260"/>
                    <exon start="61179" stop="61074"/>
                    <exon start="60984" stop="60809"/>
                    <exon start="60722" stop="60562"/>
                    <exon start="60315" stop="60057"/>
                    <exon start="59958" stop="59848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMVGDIAFMCPEFMQSFFGGVAASGALTSGLRLITKAAFENSNNGLRKGVMLFLAISAFFEFLCILLYSFVFPKLPIVKHYRSKAAAEGSTTVAADLAAAGIGIQPMEKANNDAKQSERLTTKQLLLQNIDYELNLYLIYVLTLSIFPGFLYENTGTHQLGSWYPLVLIAMYNVWDLIGRYVPLIKKIELQSRKGLIIATLSRFSFIPCFYFTAKYGDQGWMIFLVSFLGLTNGYLTVCVMTAAPKGYKGPEANALGNLLVLFLLAGIFSGVALDWLWIIGNGKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="83239" PGL_stop="86422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83239" e_stop="83359"/>
            <exon e_start="84980" e_stop="86422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="83239" e_stop="83359" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84980" e_stop="86422" e_length="1443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83239" stop="83359"/>
              <exon start="84980" stop="86422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT : AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTT</gDNA_template>
            <first_frame> I  F  L  S  F  F  P  T  N  I  S  S  L  S  S  F  A  V  Q  N  C  I  T  I  N  T  L  L  N  L  E  T  P  K  S  Y  K  S  P  S   : *  R  *  V  G  L  F  T  R  R  Q  S  S  T  P  A  T  A  I  Q  *  P  P  H  L  A  R  S  T  T  T  T  T  C  M  M  T  P  P  L  H  S  H  V  P  V  S  C  A  A  S  V  A  K  L  C  S  G  H  T  T  I  N  F  V  T  S  A  A  I  L  E  L  L  R  *  T  A  T  L  P  S  Q  L  S  L  E  N  S  P  N  S  S  D  I  Q  T  L  T  S  S  T  S  F  L  T  R  N  W  M  L  *  *  P  S  Q  P  M  K  I  W  R  I  *  W  K  S  T  I  G  L  R  R  I  R  N  R  L  G  F  V  S  S  F  S  L  T  I  L  V  P  E  P  A  L  S  A  P  S  S  T  A  H  L  S  E  S  N  G  L  L  T  L  S  M  V  A  P  V  R  V  W  S  V  G  D  P  K  Y  R  L  L  F  L  K  F  R  I  T  C  S  G  W  T  I  P  M  T  R  P  A  N  R  N  S  *  R  T  R  *  F  R  S  R  A  H  P  L  H  P  L  F  L  L  L  I  A  L  F  H  H  H  Q  *  H  L  Q  Q  L  *  Q  *  C  R  I  F  H  R  L  K  Q  S  S  I  N  Q  I  R  Q  L  N  P  E  K  H  R  L  R  V  R  L  K  P  V  K  G  R  F  N  S  N  N  R  V  I  Q  V  V  H  Y  G  I  T  Q  H  H  R  C  K  P  Y  P  F  T  M  S  L  V  R  F  S  Q  E  I  S  R  F  N  P  L  H  *  G  L  H  I  F  I  L  F  Q  F  L  R  I  N  Y  P  S  G  I  H  P  L  Q  V  W  A  K  Y  I  V  D  *  G  R  *  *  V  L  T  R  M  N  *  E  L  L  L  K  E  *  I  T  M  Q  L  G  I  Q  E  L  F  R  V  T  E  V  Q  L  A  K  K  C  R  D  P  E  V  M  E  C  R  V  G  S  P  N  D  Q  K  V  *  L  R  S  I  F  C  V  L  P  F  V  L  I  I  L  F  *  F  E  A  K  F  R  E  W  *  I  N  C  S  N  *  *  S  I  L  Q  L  *  Y  V  S  I  *  L  V  K  K  H  L  S  K  V  T  S  Q  C  F  </first_frame>
            <second_frame>  Y  F  F  L  S  F  Q  Q  T  F  H  H  F  L  L  L  Q  S  K  I  A  S  Q  L  I  L  F  *  I  L  R  H  Q  R  V  T  S  L  H  H  :  S  D  E  W  V  Y  S  R  A  A  R  V  R  L  R  Q  R  R  F  S  S  L  H  T  S  L  G  A  P  P  P  P  H  V  *  *  H  H  R  Y  T  A  T  C  P  F  H  V  Q  L  R  W  Q  N  C  A  Q  A  T  R  Q  S  T  S  L  R  R  R  R  Y  S  N  C  C  G  E  P  P  H  Y  L  R  S  S  P  W  K  T  L  Q  T  H  R  I  S  K  H  *  H  Q  V  P  A  S  *  R  G  T  G  C  F  D  N  R  H  N  R  *  R  F  G  E  Y  D  G  R  V  R  S  A  Y  A  E  S  E  I  G  S  A  S  S  L  P  F  P  *  R  F  W  F  Q  S  Q  H  Y  Q  L  H  P  R  R  L  I  *  A  R  A  M  V  C  *  R  S  Q  W  W  R  R  S  G  S  G  A  W  A  I  R  S  I  V  Y  C  F  *  S  S  G  L  L  V  R  A  G  Q  F  R  *  P  A  P  R  I  E  I  R  E  E  Q  D  N  F  G  A  G  L  T  R  S  T  H  C  F  F  S  L  L  L  Y  F  I  I  I  N  D  T  Y  S  S  Y  D  S  D  A  G  S  S  T  G  *  N  K  A  R  *  T  K  S  D  S  *  I  Q  R  N  T  G  C  E  C  D  *  N  R  *  K  D  G  S  T  A  T  T  E  L  S  K  *  S  T  M  A  L  P  S  T  T  G  A  N  H  T  R  L  L  C  P  W  F  G  S  A  R  K  Y  P  G  S  T  H  Y  I  K  G  S  I  Y  S  S  F  S  S  S  S  E  S  I  T  R  R  V  S  T  R  F  K  Y  G  P  S  I  *  W  I  E  A  G  N  E  C  *  P  E  *  I  K  S  C  Y  *  R  N  E  L  L  C  S  *  E  F  R  S  C  S  G  L  R  R  S  S  *  R  R  N  A  G  I  R  R  *  W  N  V  G  S  G  L  P  M  I  K  R  F  D  *  E  A  Y  F  V  C  Y  R  L  C  *  S  F  C  F  N  L  K  Q  S  F  V  N  G  K  *  I  V  V  I  D  N  L  S  S  N  F  N  M  *  V  F  D  *  *  K  S  I  *  A  K  *  L  L  N  V  F </second_frame>
            <third_frame>   I  S  F  F  L  S  N  K  H  F  I  T  F  F  F  C  S  P  K  L  H  H  N  *  Y  S  F  K  S  *  D  T  K  E  L  Q  V  S  I  I :   A  M  S  G  S  I  H  A  P  P  E  F  D  S  G  N  G  D  S  V  A  S  T  P  R  S  E  H  H  H  H  H  M  Y  D  D  T  T  A  T  Q  P  R  A  R  F  M  C  S  F  G  G  K  I  V  L  R  P  H  D  N  Q  L  R  Y  V  G  G  D  T  R  I  V  A  V  N  R  H  T  T  F  A  A  L  L  G  K  L  S  K  L  I  G  Y  P  N  I  N  I  K  Y  Q  L  P  N  E  E  L  D  A  L  I  T  V  T  T  D  E  D  L  E  N  M  M  E  E  Y  D  R  L  T  Q  N  Q  K  S  A  R  L  R  L  F  L  F  P  N  D  S  G  S  R  A  S  T  I  S  S  I  L  D  G  S  S  K  R  E  Q  W  F  V  D  A  L  N  G  G  A  G  P  G  L  E  R  G  R  S  E  V  S  S  I  V  S  E  V  P  D  Y  L  F  G  L  D  N  S  D  D  P  P  R  E  S  K  F  V  K  N  K  I  I  S  E  P  G  S  P  A  P  P  I  V  S  S  P  Y  C  S  I  S  S  S  S  M  T  P  T  A  A  M  T  V  M  P  D  L  P  P  V  K  T  K  L  D  K  P  N  P  T  A  E  S  R  E  T  P  V  A  S  A  T  E  T  G  E  R  T  V  Q  Q  Q  Q  Q  S  Y  P  S  S  P  L  W  H  Y  P  A  P  P  V  Q  T  I  P  V  Y  Y  V  P  G  S  V  Q  P  G  N  I  P  V  Q  P  I  T  L  R  A  P  Y  I  H  P  F  P  V  P  P  N  Q  L  P  V  G  Y  P  P  A  S  S  M  G  Q  V  Y  S  G  L  R  P  V  M  S  V  D  P  N  E  L  R  V  V  T  E  G  M  N  Y  Y  A  V  R  N  S  G  V  V  P  G  Y  G  G  P  V  S  E  E  M  Q  G  S  G  G  D  G  M  S  G  R  V  S  Q  *  S  K  G  L  I  E  K  H  I  L  C  A  T  V  C  V  N  H  F  V  L  I  *  S  K  V  S  *  M  V  N  K  L  *  *  L  I  I  Y  P  P  T  L  I  C  K  Y  L  I  S  K  K  A  F  K  Q  S  N  F  S  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83331" stop="83359"/>
                    <exon start="84980" stop="86234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTKELQVSIIAMSGSIHAPPEFDSGNGDSVASTPRSEHHHHHMYDDTTATQPRARFMCSFGGKIVLRPHDNQLRYVGGDTRIVAVNRHTTFAALLGKLSKLIGYPNINIKYQLPNEELDALITVTTDEDLENMMEEYDRLTQNQKSARLRLFLFPNDSGSRASTISSILDGSSKREQWFVDALNGGAGPGLERGRSEVSSIVSEVPDYLFGLDNSDDPPRESKFVKNKIISEPGSPAPPIVSSPYCSISSSSMTPTAAMTVMPDLPPVKTKLDKPNPTAESRETPVASATETGERTVQQQQQSYPSSPLWHYPAPPVQTIPVYYVPGSVQPGNIPVQPITLRAPYIHPFPVPPNQLPVGYPPASSMGQVYSGLRPVMSVDPNELRVVTEGMNYYAVRNSGVVPGYGGPVSEEMQGSGGDGMSGRVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="92056" PGL_stop="92588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92056" e_stop="92173"/>
            <exon e_start="92332" e_stop="92418"/>
            <exon e_start="92493" e_stop="92588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.732" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="92056" e_stop="92173" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92174" i_stop="92331" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92332" e_stop="92418" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.898">
            <gDNA_intron_boundary i_start="92419" i_stop="92492" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="92493" e_stop="92588" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="92173"/>
              <exon start="92332" stop="92418"/>
              <exon start="92493" stop="92588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCAAATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAA : GTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTG : GAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGTCGGATATTCAG</gDNA_template>
            <first_frame> R  R  R  F  S  S  L  C  Q  R  V  R  S  H  A  V  V  S  R  L  Q  I  H  R  C  A  L  F  P  S  P  P  F  C  F  P  Y  F  S   : S  T  K  F  L  Q  I  *  W  L  Y  C  I  P  R  R  Q  L  H  *  S  F  S  L  Q  T  S  S  S   : G  E  *  A  M  D  C  T  D  S  R  H  C  *  P  F  S  C  R  K  N  E  E  R  R  F  I  T  V  G  Y  S  </first_frame>
            <second_frame>  D  A  V  S  A  L  F  A  N  E  S  D  H  M  P  S  F  L  D  F  K  S  T  D  V  R  F  S  L  R  R  H  S  V  F  L  I  S  Q  :  V  Q  S  S  Y  K  F  D  G  Y  I  A  Y  L  A  V  N  Y  I  D  R  F  L  S  K  Q  A  V  L  :  E  N  K  P  W  I  V  R  I  L  V  I  V  S  L  S  L  A  A  K  M  R  N  V  D  L  S  L  S  D  I  Q </second_frame>
            <third_frame>   T  P  F  Q  L  S  L  P  T  S  P  I  T  C  R  R  F  S  T  S  N  P  P  M  C  A  F  P  F  A  A  I  L  F  S  L  F  L  K :   Y  K  V  L  T  N  L  M  A  I  L  H  T  S  P  S  I  T  L  I  V  F  S  P  N  K  Q  F  W :   R  I  S  H  G  L  Y  G  F  S  S  L  L  A  F  L  L  P  Q  K  *  G  T  S  I  Y  H  C  R  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92057" stop="92173"/>
                    <exon start="92332" stop="92418"/>
                    <exon start="92493" stop="92588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAVSALFANESDHMPSFLDFKSTDVRFSLRRHSVFLISQVQSSYKFDGYIAYLAVNYIDRFLSKQAVLENKPWIVRILVIVSLSLAAKMRNVDLSLSDIQ</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92058" stop="92173"/>
                    <exon start="92332" stop="92418"/>
                    <exon start="92493" stop="92556"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPFQLSLPTSPITCRRFSTSNPPMCAFPFAAILFSLFLKYKVLTNLMAILHTSPSITLIVFSPNKQFWRISHGLYGFSSLLAFLLPQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="94192" PGL_stop="93458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94192" e_stop="93458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94192" e_stop="93458" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94192" stop="93458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</gDNA_template>
            <first_frame> L  L  S  K  K  L  M  T  I  C  L  Y  S  K  I  Q  T  P  C  *  N  Q  H  N  N  N  V  F  S  L  *  A  P  L  G  H  Y  Y  S  S  L  L  A  S  L  E  S  G  K  A  K  Y  R  K  L  L  F  F  R  L  F  F  P  Y  W  H  *  L  H  I  K  L  Q  I  Y  V  N  I  Q  L  H  S  T  P  L  S  L  F  T  P  S  S  S  K  E  Q  R  F  F  E  *  S  I  T  *  K  Y  K  *  A  N  F  L  Y  T  I  M  L  I  V  K  P  I  E  I  V  H  L  I  S  C  N  S  T  L  C  F  S  L  E  F  N  S  F  K  D  P  P  R  I  C  S  H  S  N  K  T  A  M  H  E  T  T  K  S  M  K  T  K  *  G  R  W  F  T  V  L  L  S  *  H  H  *  T  *  E  I  W  N  V  *  S  S  L  I  S  L  N  L  R  F  L  I  L  S  L  S  *  V  S  H  *  E  L  V  C  S  H  S  R  T  L  F  G  V  N  L  L  Q  Y  S  L  P  S  I  G  I  S  R  I  T  A  K  A  F </first_frame>
            <second_frame>  C  F  Q  R  S  *  *  Q  Y  V  F  I  P  K  F  K  H  P  A  K  I  S  I  I  T  T  F  S  L  S  K  P  H  S  D  I  I  I  H  H  S  *  P  L  W  K  V  A  K  L  N  T  G  S  F  S  S  S  A  F  F  F  P  I  G  T  D  C  T  *  N  Y  K  F  M  *  I  F  S  F  T  V  L  P  Y  L  C  S  P  P  P  V  P  K  N  K  D  S  L  N  S  L  *  H  K  S  T  N  R  R  I  F  S  T  Q  L  C  *  *  *  N  L  *  R  L  C  I  *  L  V  A  I  L  H  S  A  L  V  *  S  S  I  H  S  K  I  L  H  V  S  V  P  T  R  T  K  L  L  C  M  R  Q  Q  N  Q  *  K  Q  N  R  D  A  G  S  L  S  Y  Y  L  S  T  T  E  P  E  K  S  G  T  F  D  H  P  L  Y  R  S  I  S  A  F  *  Y  C  P  Y  P  E  S  R  I  E  S  L  Y  V  H  T  P  E  H  F  L  A  S  T  Y  Y  S  T  P  S  L  L  S  A  F  P  A  L  Q  P  K  H   </second_frame>
            <third_frame>   A  F  K  E  A  N  D  N  M  S  L  F  Q  N  S  N  T  L  L  K  S  A  *  *  Q  R  F  L  S  L  S  P  T  R  T  L  L  F  I  T  L  S  L  S  G  K  W  Q  S  *  I  Q  E  A  S  L  L  P  P  F  F  S  L  L  A  L  T  A  H  K  T  T  N  L  C  K  Y  S  A  S  Q  Y  S  L  I  F  V  H  P  L  Q  F  Q  R  T  K  I  L  *  I  V  Y  N  I  K  V  Q  I  G  E  F  S  L  H  N  Y  A  N  S  E  T  Y  R  D  C  A  S  N  *  L  Q  F  Y  T  L  L  *  F  R  V  Q  F  I  Q  R  S  S  T  Y  L  F  P  L  E  Q  N  C  Y  A  *  D  N  K  I  N  E  N  K  I  G  T  L  V  H  C  L  T  I  L  A  P  L  N  L  R  N  L  E  R  L  I  I  P  Y  I  A  Q  S  P  L  F  D  I  V  L  I  L  S  L  A  L  R  A  C  M  F  T  L  Q  N  T  F  W  R  Q  L  T  T  V  L  P  P  F  Y  R  H  F  P  H  Y  S  Q  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93710" stop="93459"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNKINENKIGTLVHCLTILAPLNLRNLERLIIPYIAQSPLFDIVLILSLALRACMFTLQNTFWRQLTTVLPPFYRHFPHYSQSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="97781" PGL_stop="96428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97781" e_stop="96428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="97781" e_stop="96428" e_length="1354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97781" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTAAATGTGGGTCAGTGGGCACTGCTAGGTTGGTTTTTGATAAGATGGATTCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTTGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAAGAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTAGACAAGGGGCGCAACTATTTCACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTG</gDNA_template>
            <first_frame> A  K  C  G  S  V  G  T  A  R  L  V  F  D  K  M  D  S  K  T  A  V  S  L  N  A  M  I  D  G  Y  A  R  N  G  Y  H  D  E  A  L  I  I  F  Q  K  M  L  D  E  G  F  K  P  T  N  V  T  I  M  S  T  L  H  A  C  A  E  T  R  N  I  E  L  G  Q  Y  V  H  K  L  V  N  Q  L  G  L  G  S  N  V  A  V  V  N  S  L  I  S  M  Y  C  K  C  Q  R  V  D  I  A  A  E  L  F  E  N  L  K  G  K  T  L  V  S  W  N  A  L  I  L  G  Y  A  Q  N  G  C  V  M  D  A  L  T  H  F  C  E  M  H  L  Q  N  I  T  P  D  S  F  T  M  V  S  V  V  T  A  L  A  E  L  S  V  L  R  Q  A  K  W  I  H  G  F  A  V  R  T  C  L  N  G  N  V  F  V  A  T  A  L  V  D  M  Y  A  K  C  G  A  V  H  T  A  R  K  L  F  D  M  M  D  D  R  H  V  T  T  W  N  A  M  I  D  G  Y  G  T  H  G  F  G  K  E  A  V  E  L  F  E  E  M  R  K  G  H  V  E  P  N  D  I  T  F  L  C  V  I  S  A  C  S  H  S  G  F  V  D  K  G  R  N  Y  F  T  I  M  R  E  E  Y  N  L  E  P  S  M  D  H  Y  G  A  M  V  D  L  I  G  R  A  G  R  L  S  E  A  W  N  F  I  D  N  M  P  T  R  P  G  L  N  V  Y  G  A  M  L  G  A  C  K  I  H  K  N  V  D  L  G  E  K  A  A  D  K  L  F  E  L  D  P  D  D  G  G  Y  H  V  L  L  A  N  M  Y  A  R  A  S  I  W  H  K  V  A  N  V  R  T  M  M  E  R  K  G  I  Q  K  T  P  G  W  S  L  V  D  L  R  N  E  V  H  T  F  Y  S  G  S  T  S  H  P  Q  S  E  K  I  Y  A  Y  L  E  K  L  F  D  R  I  K  A  A  G  Y  I  P  D  T  D  S  I  H  D  V  E  D  V  </first_frame>
            <second_frame>  L  N  V  G  Q  W  A  L  L  G  W  F  L  I  R  W  I  L  R  R  L  Y  H  *  M  L  *  *  M  D  M  H  G  M  D  I  T  M  K  L  L  S  S  F  R  K  C  W  M  K  D  S  N  Q  R  M  *  L  L  *  A  L  Y  M  R  V  L  K  Q  G  I  L  S  L  D  N  M  F  T  N  W  S  T  N  *  V  L  V  L  M  L  Q  L  L  T  R  *  F  Q  C  I  A  S  A  K  E  W  I  L  Q  L  N  C  L  K  T  *  K  E  K  H  L  F  H  G  M  L  *  F  W  A  M  H  K  M  D  V  *  W  M  H  *  L  I  F  V  K  C  I  C  R  T  S  H  L  I  H  L  Q  W  *  V  L  L  L  L  L  L  S  Y  Q  Y  Y  A  K  L  S  G  Y  M  D  L  L  *  E  L  V  *  T  G  M  F  L  *  P  L  H  L  L  T  C  M  Q  N  V  E  Q  F  T  Q  Q  E  S  Y  L  T  *  W  M  I  G  M  L  Q  H  G  M  P  *  *  M  D  M  A  H  M  A  L  E  R  K  L  L  N  Y  L  R  K  *  E  R  G  M  *  S  L  T  T  *  H  F  S  V  S  S  Q  L  A  A  T  L  A  L  *  T  R  G  A  T  I  S  R  S  *  G  K  N  T  T  W  S  L  Q  W  T  I  M  G  Q  W  L  T  *  L  V  E  L  V  G  *  V  R  L  G  T  S  L  I  I  C  L  P  D  Q  D  S  M  S  M  V  Q  C  W  E  L  A  R  F  T  K  M  *  I  W  G  R  R  Q  Q  T  N  Y  L  S  *  I  P  M  M  V  D  I  M  C  F  L  L  I  C  T  P  G  L  Q  Y  G  I  K  L  L  M  S  E  L  *  W  R  E  K  V  F  K  R  H  L  D  G  V  *  L  I  *  E  T  R  S  T  H  S  T  Q  E  A  L  A  I  L  S  Q  R  R  S  M  L  T  L  R  N  C  L  I  G  L  K  L  L  D  I  Y  L  I  L  I  Q  F  T  M  W  K  M  L </second_frame>
            <third_frame>   *  M  W  V  S  G  H  C  *  V  G  F  *  *  D  G  F  *  D  G  C  I  I  E  C  Y  D  R  W  I  C  T  E  W  I  S  R  *  S  S  Y  H  L  S  E  N  V  G  *  R  I  Q  T  N  E  C  D  Y  Y  E  H  F  T  C  V  C  *  N  K  E  Y  *  A  W  T  I  C  S  Q  T  G  Q  P  T  R  S  W  F  *  C  C  S  C  *  L  V  D  F  N  V  L  Q  V  P  K  S  G  Y  C  S  *  I  V  *  K  L  E  R  K  N  T  C  F  M  E  C  F  D  F  G  L  C  T  K  W  M  C  N  G  C  I  N  S  F  L  *  N  A  S  A  E  H  H  T  *  F  I  Y  N  G  K  C  C  Y  C  S  C  *  V  I  S  I  T  P  S  *  V  D  T  W  I  C  C  K  N  L  F  E  R  E  C  F  C  S  H  C  T  C  *  H  V  C  K  M  W  S  S  S  H  S  K  K  A  I  *  H  D  G  *  *  A  C  Y  N  M  E  C  H  D  R  W  I  W  H  T  W  L  W  K  G  S  C  *  I  I  *  G  N  E  K  G  A  C  R  A  *  R  H  N  I  S  L  C  H  L  S  L  Q  P  L  W  L  C  R  Q  G  A  Q  L  F  H  D  H  E  G  R  I  Q  L  G  A  F  N  G  P  L  W  G  N  G  *  P  N  W  S  S  W  S  A  E  *  G  L  E  L  H  *  *  Y  A  Y  Q  T  R  T  Q  C  L  W  C  N  V  G  S  L  Q  D  S  Q  K  C  R  F  G  G  E  G  S  R  Q  T  I  *  A  R  S  R  *  W  W  I  S  C  A  S  C  *  Y  V  R  Q  G  F  N  M  A  *  S  C  *  C  Q  N  Y  D  G  E  K  R  Y  S  K  D  T  W  M  E  S  S  *  F  K  K  R  G  P  H  I  L  L  R  K  H  *  P  S  S  V  R  E  D  L  C  L  P  *  E  T  V  *  *  D  *  S  C  W  I  Y  T  *  Y  *  F  N  S  R  C  G  R  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97781" stop="96429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKCGSVGTARLVFDKMDSKTAVSLNAMIDGYARNGYHDEALIIFQKMLDEGFKPTNVTIMSTLHACAETRNIELGQYVHKLVNQLGLGSNVAVVNSLISMYCKCQRVDIAAELFENLKGKTLVSWNALILGYAQNGCVMDALTHFCEMHLQNITPDSFTMVSVVTALAELSVLRQAKWIHGFAVRTCLNGNVFVATALVDMYAKCGAVHTARKLFDMMDDRHVTTWNAMIDGYGTHGFGKEAVELFEEMRKGHVEPNDITFLCVISACSHSGFVDKGRNYFTIMREEYNLEPSMDHYGAMVDLIGRAGRLSEAWNFIDNMPTRPGLNVYGAMLGACKIHKNVDLGEKAADKLFELDPDDGGYHVLLANMYARASIWHKVANVRTMMERKGIQKTPGWSLVDLRNEVHTFYSGSTSHPQSEKIYAYLEKLFDRIKAAGYIPDTDSIHDVEDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="102176" PGL_stop="99401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102176" e_stop="101644"/>
            <exon e_start="101019" e_stop="100956"/>
            <exon e_start="100585" e_stop="100421"/>
            <exon e_start="100045" e_stop="99983"/>
            <exon e_start="99754" e_stop="99401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="0.998"/>
          <exon-intron don_prob="0.410" acc_prob="0.748" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="102176" e_stop="101644" e_length="533"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="101643" i_stop="101020" i_length="624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101019" e_stop="100956" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.410" acc_prob="0.748">
            <gDNA_intron_boundary i_start="100955" i_stop="100586" i_length="370"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100585" e_stop="100421" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99983" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="99754" e_stop="99401" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102176" stop="101644"/>
              <exon start="101019" stop="100956"/>
              <exon start="100585" stop="100421"/>
              <exon start="100045" stop="99983"/>
              <exon start="99754" stop="99401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATGGTGGAGGGGTTTTGAGGATGTGGGAAGGAGAGCTTTTTTGTGATTGTCTGGAGGACCGTCGAATTGCTGTTCAATCTGTTTG : CTGCCCCTGGTACAGATTTGGAAAGAATATGAAGCGTTCTGGTTTCGGTTCCTGCTTTCTTCAG : GGCTCTATTTATTTCATCCTCACTCTTGTTGCTCTCCTAAGCATTCTGGCTTTCATTGTCACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA : GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAG : GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATACAAACAAGGGTAGAATCGCG</gDNA_template>
            <first_frame> R  A  T  I  S  S  S  K  N  K  N  K  N  R  L  *  L  C  S  T  I  S  L  I  Y  Q  I  N  S  L  Y  I  N  S  V  S  I  S  T  I  L  I  I  Y  L  Y  I  S  S  V  L  L  G  T  N  I  S  A  *  S  I  L  C  S  F  V  *  T  F  *  *  F  L  E  E  C  S  Q  I  M  D  V  F  E  K  R  E  M  A  A  E  K  A  R  G  R  E  E  E  E  E  G  E  G  Q  R  L  L  S  E  G  V  T  V  V  D  F  D  L  L  C  S  T  V  A  M  Q  A  Q  K  G  Q  W  V  K  L  N  L  N  G  D  E  E  N  A  M  G  Y  D  Y  G  G  G  V  L  R  M  W  E  G  E  L  F  C  D  C  L  E  D  R  R  I  A  V  Q  S  V  C :   C  P  W  Y  R  F  G  K  N  M  K  R  S  G  F  G  S  C  F  L  Q  :  G  S  I  Y  F  I  L  T  L  V  A  L  L  S  I  L  A  F  I  V  T  K  K  H  C  F  L  Y  V  G  G  A  F  I  I  L  V  G  V  Y  M  G  Y  H  R  T  K  M  R  N  K  F  N  I  R  :  G  D  S  S  L  D  D  C  I  F  H  L  T  C  P  C  C  T  L  S  Q  :  E  A  R  T  L  E  M  N  N  V  Q  D  G  I  W  H  G  R  G  D  T  I  C  V  G  S  Y  S  E  P  G  R  T  P  F  E  L  S  P  P  A  V  V  S  T  K  S  *  T  M  N  S  T  E  G  L  G  H  K  K  E  *  Q  Y  G  V  S  S  *  F  *  S  R  A  S  F  T  L  F  S  T  L  K  S  Q  A  Y  K  R  G  P  E  L  A  T  F  F  F  Q  N  R  R  I  S  L  D  L  P  I  H  D  T  N  K  G  R  I  A </first_frame>
            <second_frame>  E  P  P  Y  P  P  L  K  I  K  I  K  I  D  Y  N  Y  V  P  Q  Y  P  L  F  T  K  L  T  L  Y  I  *  T  L  S  Q  S  Q  L  F  *  S  Y  I  S  I  S  L  P  F  C  S  A  Q  I  F  P  L  N  P  Y  S  V  R  L  Y  K  L  F  D  N  F  W  K  S  A  A  R  *  W  M  C  L  K  R  E  K  W  R  R  R  K  Q  E  E  G  R  R  R  K  R  E  R  G  R  G  C  C  R  K  G  *  L  W  W  I  L  I  C  C  V  P  R  W  R  C  R  H  K  R  G  S  G  *  S  *  I  *  M  G  M  K  K  M  L  W  V  M  I  M  V  E  G  F  *  G  C  G  K  E  S  F  F  V  I  V  W  R  T  V  E  L  L  F  N  L  F   : A  A  P  G  T  D  L  E  R  I  *  S  V  L  V  S  V  P  A  F  F  R :   A  L  F  I  S  S  S  L  L  L  L  S  *  A  F  W  L  S  L  S  Q  R  S  T  A  F  Y  M  L  V  V  L  L  *  Y  *  L  E  Y  I  W  V  I  T  A  Q  K  *  E  T  S  S  I  S  E :   V  I  V  L  W  M  I  A  S  S  I  *  P  V  R  A  A  P  Y  L  R :   K  L  E  H  *  R  *  T  M  S  K  M  A  F  G  M  V  E  V  I  P  Y  A  *  E  V  I  L  N  L  A  G  P  H  L  N  *  V  R  L  L  L  C  Q  Q  S  P  E  P  *  T  L  Q  R  A  *  D  T  K  R  N  D  N  T  G  L  A  V  N  S  R  V  E  H  P  S  H  C  S  L  P  *  K  A  K  P  T  S  A  V  L  N  *  Q  H  S  F  S  R  T  E  E  S  H  *  T  C  P  F  M  I  Q  T  R  V  E  S   </second_frame>
            <third_frame>   S  H  H  I  L  L  *  K  *  K  *  K  *  T  I  I  M  F  H  N  I  P  Y  L  P  N  *  L  F  I  Y  K  L  C  L  N  L  N  Y  F  N  H  I  S  L  Y  L  F  R  S  A  R  H  K  Y  F  R  L  I  H  T  L  F  V  C  I  N  F  L  I  I  F  G  R  V  Q  P  D  N  G  C  V  *  K  E  R  N  G  G  G  E  S  K  R  K  G  G  G  G  R  G  R  G  A  E  V  V  V  G  R  G  D  C  G  G  F  *  F  V  V  F  H  G  G  D  A  G  T  K  G  A  V  G  E  V  K  F  E  W  G  *  R  K  C  Y  G  L  *  L  W  W  R  G  F  E  D  V  G  R  R  A  F  L  *  L  S  G  G  P  S  N  C  C  S  I  C  L  :  L  P  L  V  Q  I  W  K  E  Y  E  A  F  W  F  R  F  L  L  S  S   : G  L  Y  L  F  H  P  H  S  C  C  S  P  K  H  S  G  F  H  C  H  K  E  A  L  L  F  I  C  W  W  C  F  Y  N  I  S  W  S  I  Y  G  L  S  P  H  K  N  E  K  Q  V  Q  Y  Q   : R  *  *  F  F  G  *  L  H  L  P  F  D  L  S  V  L  H  L  I  S   : G  S  *  N  I  R  D  E  Q  C  P  R  W  H  L  A  W  *  R  *  Y  H  M  R  R  K  L  F  *  T  W  Q  D  P  I  *  T  K  S  A  C  C  C  V  N  K  V  L  N  H  E  L  Y  R  G  L  R  T  Q  K  G  M  T  I  R  G  *  Q  L  I  L  E  *  S  I  L  H  I  V  L  Y  L  E  K  P  S  L  Q  A  R  S  *  I  S  N  I  L  F  P  E  Q  K  N  L  I  R  L  A  H  S  *  Y  K  Q  G  *  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101963" stop="101644"/>
                    <exon start="101019" stop="100956"/>
                    <exon start="100585" stop="100421"/>
                    <exon start="100045" stop="99983"/>
                    <exon start="99754" stop="99611"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLEECSQIMDVFEKREMAAEKARGREEEEEGEGQRLLSEGVTVVDFDLLCSTVAMQAQKGQWVKLNLNGDEENAMGYDYGGGVLRMWEGELFCDCLEDRRIAVQSVCCPWYRFGKNMKRSGFGSCFLQGSIYFILTLVALLSILAFIVTKKHCFLYVGGAFIILVGVYMGYHRTKMRNKFNIRGDSSLDDCIFHLTCPCCTLSQEARTLEMNNVQDGIWHGRGDTICVGSYSEPGRTPFELSPPAVVSTKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="108646" PGL_stop="105937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108646" e_stop="108323"/>
            <exon e_start="106811" e_stop="105937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108646" e_stop="108323" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.977">
            <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106811" e_stop="105937" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108646" stop="108323"/>
              <exon start="106811" stop="105937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG : AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTC</gDNA_template>
            <first_frame> N  P  L  H  R  V  F  L  L  P  Q  I  H  K  I  R  L  P  N  S  C  D  C  I  R  V  L  K  D  A  A  E  T  L  E  E  Q  Q  R  S  C  L  L  Y  V  R  *  E  E  K  V  R  V  W  N  T  K  G  E  A  G  K  R  F  N  Q  A  I  R  C  L  F  P  L  F  K  T  L  H  R  S  V  V  L  P  E  R  A  C  L  L  Q  R  M  H  S  R  M  P  F  V  P  E  K  G  Y  P  K  :  K  V  S  C  S  Y  R  S  A  E  A  R  K  R  R  G  R  G  E  V  D  A  A  E  S  Q  G  S  *  C  I  *  S  T  K  S  W  S  S  S  A  V  Q  *  *  E  L  Q  Q  R  Q  K  W  I  P  W  S  *  Q  C  E  S  Y  F  L  *  G  G  S  T  *  N  H  E  S  I  L  A  A  L  C  N  T  R  C  T  C  *  G  G  S  P  I  H  *  H  N  L  S  *  R  E  G  K  N  *  D  E  K  P  F  P  Y  T  L  H  *  R  Y  K  C  T  E  E  T  Q  V  S  *  Q  E  F  H  M  S  Q  L  Q  G  H  T  N  Q  Y  F  V  T  C  S  T  *  Y  L  W  T  C  L  L  Q  E  M  C  R  K  I  C  G  C  *  Q  G  L  R  G  L  *  Q  T  M  *  K  *  K  S  G  E  C  G  K  G  R  N  R  V  C  C  P  W  R  *  S  *  S  K  R  L  Q  T  L  G  E  W  K  W  F  G  P  G  E  A  C  H  E  D  V  T  C  C  I  P  V  C  L  L  E  I  V  G  L  C  M  V  C  C  N  M  V  Y  H  L  L  P  *  K  L  S  I  F  L  Y  R  L  Y  L  T  A  A  P  R  K  Q  L  I  S  F  P  I  H  *  *  Y  F  I  L  *  L  F  E  T  C  S   </first_frame>
            <second_frame>  I  H  F  I  G  F  F  F  F  P  K  F  I  K  F  V  F  Q  I  H  V  I  A  L  G  F  *  K  M  P  Q  R  H  S  K  N  N  N  D  L  A  F  F  T  Y  D  E  K  R  K  L  G  Y  G  T  Q  K  E  R  L  G  K  D  S  I  K  P  F  D  A  C  S  L  C  L  K  P  F  I  D  P  L  C  C  Q  K  G  H  V  F  C  K  E  C  I  L  E  C  L  L  S  Q  K  K  D  I  Q  R :   K  L  A  A  H  T  G  Q  Q  K  Q  E  K  E  E  E  E  E  R  L  M  L  Q  K  A  R  D  L  D  A  F  D  Q  Q  N  H  G  P  V  P  Q  Y  N  D  K  N  Y  N  R  D  K  N  G  F  H  G  A  N  S  V  K  A  T  S  Y  E  E  E  A  L  R  T  M  K  A  F  W  L  P  S  A  T  P  D  A  P  A  K  V  E  A  P  S  T  S  T  T  C  P  E  G  R  E  K  I  K  M  K  N  L  F  P  I  H  F  T  E  D  T  S  A  Q  K  K  H  K  S  L  D  K  S  F  I  C  P  S  C  K  V  T  L  T  N  T  L  S  L  V  A  L  N  T  C  G  H  V  F  C  K  K  C  A  E  K  F  V  A  V  D  K  V  C  V  V  C  D  K  P  C  K  N  R  N  L  V  N  V  E  K  G  G  T  G  F  A  A  H  G  D  N  L  E  A  K  D  F  K  H  L  G  S  G  S  G  L  G  L  V  R  P  A  M  K  T  *  L  A  V  Y  Q  F  A  Y  *  R  *  W  G  F  V  W  C  V  V  I  W  Y  I  I  F  Y  P  E  N  *  V  F  S  C  I  V  F  I  *  L  Q  L  R  E  S  N  L  Y  P  F  Q  F  T  S  N  I  S  F  Y  N  C  L  K  L  V  P  </second_frame>
            <third_frame>   S  T  S  *  G  F  S  S  S  P  N  S  *  N  S  S  S  K  F  M  *  L  H  *  G  F  E  R  C  R  R  D  T  R  R  T  T  T  I  L  P  S  L  R  T  M  R  R  E  S  *  G  M  E  H  K  R  R  G  W  E  K  I  Q  S  S  H  S  M  L  V  P  F  V  *  N  P  S  S  I  R  C  V  A  R  K  G  M  S  F  A  K  N  A  F  *  N  A  F  C  P  R  K  R  I  S  K   : E  S  *  L  L  I  Q  V  S  R  S  K  K  K  K  R  K  R  R  G  *  C  C  R  K  P  G  I  L  M  H  L  I  N  K  I  M  V  Q  F  R  S  T  M  I  R  T  T  T  E  T  K  M  D  S  M  E  L  T  V  *  K  L  L  L  M  R  R  K  H  L  E  P  *  K  H  F  G  C  P  L  Q  H  Q  M  H  L  L  R  W  K  P  H  P  L  A  Q  L  V  L  K  G  G  K  K  L  R  *  K  T  F  S  L  Y  T  S  L  K  I  Q  V  H  R  R  N  T  S  L  L  T  R  V  S  Y  V  P  V  A  R  S  H  *  P  I  L  C  H  L  *  H  L  I  L  V  D  M  S  S  A  R  N  V  Q  K  N  L  W  L  L  T  R  F  A  W  S  V  T  N  H  V  K  I  E  I  W  *  M  W  K  R  E  E  Q  G  L  L  P  M  E  I  I  L  K  Q  K  T  S  N  T  W  G  V  E  V  V  W  A  W  *  G  L  P  *  R  R  N  L  L  Y  T  S  L  L  I  R  D  S  G  A  L  Y  G  V  L  *  Y  G  I  S  S  S  T  L  K  T  E  Y  F  L  V  S  S  L  F  N  C  S  S  A  K  A  T  Y  I  L  S  N  S  L  V  I  F  H  S  I  I  V  *  N  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108564" stop="108323"/>
                    <exon start="106811" stop="106136"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPFIDPLCCQKGHVFCKECILECLLSQKKDIQRKLAAHTGQQKQEKEEEEERLMLQKARDLDAFDQQNHGPVPQYNDKNYNRDKNGFHGANSVKATSYEEEALRTMKAFWLPSATPDAPAKVEAPSTSTTCPEGREKIKMKNLFPIHFTEDTSAQKKHKSLDKSFICPSCKVTLTNTLSLVALNTCGHVFCKKCAEKFVAVDKVCVVCDKPCKNRNLVNVEKGGTGFAAHGDNLEAKDFKHLGSGSGLGLVRPAMKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="109961" PGL_stop="110736"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109961" e_stop="110736"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="109961" e_stop="110736" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAATGGGGAGTAGAGGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGTTTGCCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTCGGTCACAGATGTGCTTCACCCTGTACCT</gDNA_template>
            <first_frame> V  T  S  L  L  P  Q  R  S  Q  E  L  K  Q  Y  T  I  E  S  D  S  N  I  T  K  H  T  I  S  L  *  I  L  Q  Y  Q  F  R  I  Y  L  F  T  P  A  *  H  H  P  K  S  H  H  Q  N  P  T  A  H  S  R  R  S  C  T  N  R  H  L  L  V  S  I  *  E  L  R  I  P  V  L  I  G  R  L  L  S  P  S  I  L  A  T  K  V  L  M  P  S  N  G  L  C  K  I  I  S  D  Q  V  T  P  L  Y  S  F  T  S  V  Q  L  R  Y  F  M  E  L  I  G  V  L  L  M  F  L  L  T  L  Q  M  K  N  H  S  G  N  W  K  M  I  L  I  T  S  Q  L  R  N  R  M  I  *  L  S  H  L  W  R  L  I  F  H  S  R  F  I  L  *  R  I  M  I  *  R  K  G  C  V  W  K  L  R  G  W  V  *  V  L  L  *  W  G  V  E  G  L  V  H  Q  G  V  A  R  K  E  G  C  L  V  V  *  V  I  I  V  C  I  I  V  F  A  P  L  L  L  L  D  I  L  M  I  K  M  L  L  L  A  M  T  R  S  Q  M  C  F  T  L  Y   </first_frame>
            <second_frame>  *  P  L  F  F  P  K  G  P  K  N  S  N  N  T  Q  S  N  R  I  R  T  S  Q  N  T  Q  Y  L  S  E  F  F  N  T  N  S  V  F  I  Y  L  H  Q  H  D  I  T  Q  K  A  T  T  R  I  R  P  P  T  H  G  D  H  A  P  T  G  I  S  S  F  P  F  R  N  S  E  F  R  C  *  S  E  G  C  Y  R  R  R  S  *  R  R  K  C  L  C  R  Q  M  G  C  A  K  L  S  P  T  R  *  R  R  Y  T  P  S  R  P  S  N  F  G  T  L  W  S  *  L  G  C  Y  *  C  F  C  *  H  C  K  *  R  I  T  A  E  T  G  R  *  F  *  *  L  H  N  Y  E  I  E  *  F  S  S  A  T  C  G  G  *  Y  S  I  Q  D  S  Y  C  E  G  S  *  Y  E  G  K  V  V  F  G  S  *  E  V  G  F  E  C  C  Y  N  G  E  *  R  V  W  C  I  K  A  *  P  E  R  R  D  A  W  *  C  E  *  L  L  C  A  S  L  C  L  P  R  C  C  C  *  I  S  *  *  *  R  C  Y  Y  W  Q  *  L  G  H  R  C  A  S  P  C  T  </second_frame>
            <third_frame>   N  L  S  S  S  P  K  V  P  R  T  Q  T  I  H  N  R  I  G  F  E  H  H  K  T  H  N  I  S  L  N  S  S  I  P  I  P  Y  L  S  I  Y  T  S  M  T  S  P  K  K  P  P  P  E  S  D  R  P  L  T  A  I  M  H  Q  P  A  S  P  R  F  H  L  G  T  P  N  S  G  A  N  R  K  V  A  I  A  V  D  L  S  D  E  S  A  Y  A  V  K  W  A  V  Q  N  Y  L  R  P  G  D  A  V  I  L  L  H  V  R  P  T  S  V  L  Y  G  A  D  W  G  A  I  D  V  S  V  D  T  A  N  E  E  S  Q  R  K  L  E  D  D  F  D  N  F  T  T  T  K  S  N  D  L  A  Q  P  L  V  E  A  N  I  P  F  K  I  H  I  V  K  D  H  D  M  K  E  R  L  C  L  E  V  E  R  L  G  L  S  A  V  I  M  G  S  R  G  F  G  A  S  R  R  S  P  K  G  G  M  L  G  S  V  S  D  Y  C  V  H  H  C  V  C  P  V  V  V  V  R  Y  P  D  D  K  D  A  T  T  G  N  D  S  V  T  D  V  L  H  P  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109963" stop="110736"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSSSPKVPRTQTIHNRIGFEHHKTHNISLNSSIPIPYLSIYTSMTSPKKPPPESDRPLTAIMHQPASPRFHLGTPNSGANRKVAIAVDLSDESAYAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIDVSVDTANEESQRKLEDDFDNFTTTKSNDLAQPLVEANIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGASRRSPKGGMLGSVSDYCVHHCVCPVVVVRYPDDKDATTGNDSVTDVLHPVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="113997" PGL_stop="113381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113997" e_stop="113857"/>
            <exon e_start="113749" e_stop="113381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="113997" e_stop="113857" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113856" i_stop="113750" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="113749" e_stop="113381" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113997" stop="113857"/>
              <exon start="113749" stop="113381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570381" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG : GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</gDNA_template>
            <first_frame> C  P  N  T  F  S  *  E  R  C  W  T  K  Q  R  C  N  *  K  W  K  N  R  K  P  S  G  G  N  K  K  E  G  K  E  E  T  P  S  *  R  G  N  C  K  S  *  :  G  G  E  E  E  S  T  *  G  S  Y  T  K  S  H  D  E  E  Q  M  R  S  G  D  K  P  K  I  F  Y  Q  R  *  H  E  R  T  *  N  K  K  L  W  *  F  C  E  S  S  P  R  V  L  L  A  P  A  S  *  L  *  Y  F  C  Y  W  L  M  T  L  R  *  R  E  L  E  V  V  Y  D  F  A  L  E  N  N  L  G  F  M  V  C  M  N  M  N  P  K  I  L  S  Y  T  F  N  L  L  G  N  E  Q  *  K  L  *  R  E  K  G  S  L  Y  S </first_frame>
            <second_frame>  V  Q  T  H  S  V  K  K  G  A  G  Q  N  S  G  A  T  K  N  G  K  T  E  N  Q  V  V  A  T  K  K  R  E  K  K  K  P  L  P  R  E  E  I  A  K  A  R :   E  E  K  R  K  A  L  R  E  A  T  R  K  A  T  M  K  N  K  *  G  L  V  I  S  R  R  Y  F  T  R  G  D  M  S  E  H  K  T  R  N  S  G  D  F  V  K  A  H  L  A  Y  Y  *  H  L  P  A  S  C  N  I  F  V  I  G  *  *  L  *  D  E  E  S  W  R  S  C  M  I  L  L  *  K  T  T  *  G  S  W  F  A  *  I  *  I  Q  K  F  C  P  I  L  L  T  Y  L  G  M  S  N  E  N  Y  K  G  K  R  V  V  C  I   </second_frame>
            <third_frame>   S  K  H  I  Q  L  R  K  V  L  D  K  T  A  V  Q  L  K  M  E  K  Q  K  T  K  W  W  Q  Q  K  R  G  K  R  R  N  P  F  L  E  R  K  L  Q  K  L   : G  R  R  R  G  K  H  L  G  K  L  H  E  K  P  R  *  R  T  N  E  V  W  *  *  A  E  D  I  L  P  E  V  T  *  A  N  I  K  Q  E  T  L  V  I  L  *  K  L  T  S  R  I  I  S  T  C  Q  L  V  V  I  F  L  L  L  V  D  D  F  E  M  K  R  A  G  G  R  V  *  F  C  F  R  K  Q  L  R  V  H  G  L  H  E  Y  E  S  K  N  F  V  L  Y  F  *  P  T  W  E  *  A  M  K  I  I  K  G  K  G  *  F  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113996" stop="113857"/>
                    <exon start="113749" stop="113689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTHSVKKGAGQNSGATKNGKTENQVVATKKREKKKPLPREEIAKAREEKRKALREATRKATMKNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="113495" PGL_stop="113622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113495" e_stop="113622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="113495" e_stop="113622" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113495" stop="113622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTCTAAAGCAAAATCATACACGACCTCCAGCTCTCTTCATCTCAAAGTCATCAACCAATAACAAAAATATTACAACTAGCTGGCAGGTGCTAATAATACGCGAGGTGAGCTTTCACAAAATCACC</gDNA_template>
            <first_frame> V  F  *  S  K  I  I  H  D  L  Q  L  S  S  S  Q  S  H  Q  P  I  T  K  I  L  Q  L  A  G  R  C  *  *  Y  A  R  *  A  F  T  K  S   </first_frame>
            <second_frame>  F  S  K  A  K  S  Y  T  T  S  S  S  L  H  L  K  V  I  N  Q  *  Q  K  Y  Y  N  *  L  A  G  A  N  N  T  R  G  E  L  S  Q  N  H  </second_frame>
            <third_frame>   F  L  K  Q  N  H  T  R  P  P  A  L  F  I  S  K  S  S  T  N  N  K  N  I  T  T  S  W  Q  V  L  I  I  R  E  V  S  F  H  K  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0059M17.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 38 chains have been computed
$ 
$ memory statistics:
$ 34000 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2125 bytes was the average size of a spliced alignment
$ 24064 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1504 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:44:45
-->
