<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:38:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367268" ref_strand="+" ref_description="SGN-E367268 [cLPT-5-F17]">
      <seq>aagaacttttttccttgatttcaggatttcttatttgtgcctctaactgttaagctttctttctccaccaaaattgctgcaactatagagatattagtgctggtaggcatctttcagatacttatttcattgtgtacaatgggtttcttcaaaagtcatgttcactagaataatattctggaggagggggagtctatgcgatattttggtgtctgctattcttcaatgtcagtccacatatctgaaactatttgagcagagttcataatacctgaaactatttgatcaggatattgattaaattagttgtcttcgagttgcttatataacatcagattcttgttatacttgaaaaagcttataatccacagttcgttacttgacctctgtgaccacacattatttcagttattgaaatccatctaagatgattatatttgtcattgatctgcttgattagtcttgtgaagcaacaccaaataccaacacacccttcttctgtgaaggaaatttgttttttagcagtattttgttattagcttatgtggaattatcattatcttattcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="6314" stop="7483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6614" g_stop="7183" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E367268" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6614" e_stop="7183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTC---C-CCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</genome_strand>
        <mrna_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGCCTCTAACTGTTAAGCTTTCTTTCTCCACCAAAATTGCTGCAACTATAGAGATATTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGG-TTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGAGTCTATGCGATATTTTGGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGCAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTGCTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACCTCTGTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCAACACCAAATACCAACACACCCTTCTTCTGTGAAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTTATTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550031" ref_strand="+" ref_description="SGN-E550031 [TUS-5-P5]">
      <seq>ttgattacattcaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaattcaagatttttcaactataagtacaaccccatgtgttccattttctagtcatgaagctcaactcatgcagccaccaattacaacaaaaatagaggatttctcatcagatcttngaaactttggtaactcacnaaataattgtcaagttattaatgatgatgagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="19309" stop="20887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19609" g_stop="19665" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19892" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="186" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20046" g_stop="20587" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="728" r_length="542" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E550031" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19609" e_stop="19665"/>
          <exon e_start="19763" e_stop="19892"/>
          <exon e_start="20046" e_stop="20587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</genome_strand>
        <mrna_strand>TTGATTACATTC-AAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTNGAAACTTTGGTAACTCACNAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390563" ref_strand="+" ref_description="SGN-E390563 [TUS-44-G23]">
      <seq>ttgattacattcaaatacatggatatggtaattggaggactcttccaaagagtgctgggcttcagagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaaaaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacagcacatgtccacgtcttgatcttcttgatctttcttccattttaaagcattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaatttcagatttttcaactataagtaccaccccatgtgttccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="19309" stop="20763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19609" g_stop="19665" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19892" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20046" g_stop="20463" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="607" r_length="420" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E390563" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19609" e_stop="19665"/>
          <exon e_start="19763" e_stop="19892"/>
          <exon e_start="20046" e_stop="20463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACA-CACA-GTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTT</genome_strand>
        <mrna_strand>TTGATTACATTCAAATACATGGATATGGTAATTGGAGGACTCTTCCAAAGAGTGCTG.................................................................................................GGCTTCAGAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAAAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACAGCACATGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAAGCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTTCAGATTTTTCAACTATAAGTACCACCCCATGTGTTCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231349" ref_strand="+" ref_description="SGN-E231349 [cLED-10-D22]">
      <seq>tgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="19310" stop="20648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19610" g_stop="19665" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19892" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="186" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20046" g_stop="20348" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="489" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E231349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19610" e_stop="19665"/>
          <exon e_start="19763" e_stop="19892"/>
          <exon e_start="20046" e_stop="20348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</genome_strand>
        <mrna_strand>TGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E390797" ref_strand="+" ref_description="SGN-E390797 [TUS-44-G23](-)">
      <seq>acttgattcaacaatatcagcagcccaactagtgaagatgaaagagataggtagtgcagcaacatgttgaactttgataatattccaaatatctgggatactattaatgaatttatgtaatttttacgcttttttttttttaaaggaacaaacaaacagttcgaaagaggtgttttattttttttttttacctgtgagcttttggacatgttgttgtttcctgaaaaacaaaaaacaaaaaaaaaaggttacttcttttagtttagtgcataatttttattttgtagaccttatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="20452" stop="21350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20752" g_stop="21058" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E390797" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20752" e_stop="21058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTTGACCTTATTTCTATCACGAGT</genome_strand>
        <mrna_strand>ACTTGATTCAACAATATCAGCAGCCCAACTAGTGAAGATGAAAGAGATAGGTAGTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTATTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTGTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTAGACCTTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550388" ref_strand="+" ref_description="SGN-E550388 [TUS-5-P5](-)">
      <seq>taatttttacgcttttttttttttaaaggaaccaaacaaacagttcgaaaagaggtgttttattttttttttttacctctgagcttttggacatgttgttgtttcctgaaaaacaaaaaacaaaaaaaaaaggtgacttcttttagtttagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="20569" stop="21322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20869" g_stop="21022" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E550388" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20869" e_stop="21022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTTACGCTTTTTTTTTTTTAAAGGAA-CAAACAAACAGTTCG-AAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCAT</genome_strand>
        <mrna_strand>TAATTTTTACGCTTTTTTTTTTTTAAAGGAACCAAACAAACAGTTCGAAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTGACTTCTTTTAGTTTAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715650" ref_strand="+" ref_description="SGN-E715650 [FB14DE11]">
      <seq>cttcggcgaggtcggtagatcctctagtggtcggaaaggtgatcggagatgttttggacatgtttgttccggtggttgactttacggtggagtatgcttccaaacaaatatcgaataatggagttgaaattaagccagcagaagctgcacaaaagcctagagttcatataaagggttctcttcattctaataatctttacacccttgttatggctgatccagatgctcctagtccaagtgaaccgacttttagagaatggctccattggattgtcacggatattcctgagggaggtgatgcctctcaagggagggagatggtggaatatatgggaccgaagccaccggcagggatacatcgatacgtgttcactctgtttaggcagaaggaggcggagcaagtgccccataaaccaccacaagggcgatccaatttcaagactcgacagtttgcaagtgacaatggacttgatcttcctgtggctgcactgtactttaattcacaaaaggaacatgctgctcatcactagctctttacaatgtgtgctgctatatatagcaatgtaattactaccttatgcttgttagctagtattgcaagtgctttgcatatatagagttatgtatacttgtgtttaaaananaaaaaaaaaaaaaaaaanccctcgggggggggccgggaaccaatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="34838" stop="36495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35138" g_stop="35343" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35344" i_stop="35491" i_length="148">
            <donor d_prob="0.387" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35492" g_stop="35553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="268" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35554" i_stop="35686" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35687" g_stop="35727" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="309" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35728" i_stop="35866" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35867" g_stop="36194" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="637" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="661"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E715650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35138" e_stop="35343"/>
          <exon e_start="35492" e_stop="35553"/>
          <exon e_start="35687" e_stop="35727"/>
          <exon e_start="35867" e_stop="36194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTTGTAAGATTAATTATTTATTATTTGTACTATTTCAAAAGTCATCTAAGAGCAATCATAAAATTAGAGTTTTTTTTTTTTTAGAAAATTAAATATGCAAATTGAGTGTCTTTTTCAAGAATTTTAATATTTGGTCCACTGTATTTTACAGGTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTGGTACGTACTCTATTCATTGTTGTTTCATTTTCTCCTTCAATTAGCCTGCATACGTCTTTTATTTAATTTTAAAACTTTATATTTAAGTACCAATAAAGTAGTTTCGATATGATTATGCTACTATCTCTTTCAGGATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAGGTATTAATTGAGATAACTATTATTAATTGTACCCTTTTTTAAGTTTCTAGATGCAGGGTAGCTACCAAGTTGTTATTACTATTATCGCACATGGTCTTTTTGTCGATGCATATACGAGTTGTTTGTTCACTTGGTGCAGGGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTT</genome_strand>
        <mrna_strand>CTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTT....................................................................................................................................................GTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTG.....................................................................................................................................GATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAG...........................................................................................................................................GGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229906" ref_strand="+" ref_description="SGN-E229906 [cLEL-33-K14](-)">
      <seq>gatttgatgcagatctcgtagactttgcaggttcgtgcttacatactgctagggagtagaatctagttcttttttatgacaaaggagggatgactggatactgattgcttaagatctttgtcacttggcaaagatttacttatgtgtatatatgttagaaccattaaggtgtaactcatagatctactcagtgacagatttaactcataaaaaggcaatgtaaacatatgctactatttaatactgcattctacatgctttgataggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="37355" stop="36486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37055" g_stop="36790" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="269" polyA_stop="285"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E229906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37055" e_stop="36790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</genome_strand>
        <mrna_strand>GATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275443" ref_strand="+" ref_description="SGN-E275443 [cLEN-10-H2]">
      <seq>gaagatgtcccaaagcttctagagtacctcaaaaggcattctagcgagttcacctcaatgcgtggttattccaaacaagttgttcacccaattcttgatcaaagtttcttctttgatgcattccacaaaatgaggcttaaggaggaattcgatgttcaaccttggacttttgaacaacatcttggagaagctattatcatccctgctggatgtccatatcaagtcaaacaacttaagtcatgtatcaacgttgttttgcacttcatctcccctgaaaacgtcgctgaatgtataaacgtaactgatgaaattcgtctacttcctgagcaccacaaggccaggggaaaagtgctggaggtgaagaaaatggttatctgtgggatgaagaatgcaattgcagaaattcgcaacctcacgcatagcaaacagtcctcttgaaagatgatagacaaaactgatttgatgcagatctcgtagactttgcaggttcgtgcttacatactgctagggagtagaatctagttcttttttatgacaaaagagggatgactggatactgattgcttaagatctttgtcacttggcaaagatttacttatgtgtatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="39487" stop="36603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39187" g_stop="39110" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39109" i_stop="39022" i_length="88">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39021" g_stop="38949" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="151" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38948" i_stop="38872" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38871" g_stop="38786" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="237" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38785" i_stop="37583" i_length="1203">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37582" g_stop="37463" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="357" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37462" i_stop="37155" i_length="308">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37154" g_stop="36903" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="609" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E275443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39187" e_stop="39110"/>
          <exon e_start="39021" e_stop="38949"/>
          <exon e_start="38871" e_stop="38786"/>
          <exon e_start="37582" e_stop="37463"/>
          <exon e_start="37154" e_stop="36903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAAGTACAGCTCTTTGTACCAAGAGTTTTGTGGTAAAAGGTAGAGCATGGCAATAGAAATTAACTTAATCTCCATCTTTTGGCACGTGCAGGTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCGGTATATTTGCTTTGTCTTCTTTTATCTTTTTCATTTGGATTAAATTAGTTCTAAGTCTTAATGTTATTACTTTTTAGATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAGGTATCCTTTATAATGATGACATTCATACTTCTTCACACAATTTGATGAGAAATCCTGCATATCTCCATCTCTCTCCTGTTCTTGTAGTAACCAAGTTTGAAAGAATAAGCACTTTGTGTAATGAAACCACCAAGAATTGTAGCTTGATTTCCTCACTGCTCATATAGATGTTTACTATATTGGGTATTTTGAACAAAGAATTAAGAGCTGTTTTTCTGGTCATTCATGGAGTTATTTCATAGTAAATGTGTGACTTGGAGATAATATTAGCAAAAAATATCCAGGTCAATTAAATAGTTCCCACCATATTCAAATGCTGGTTTGTTTAAGATGACATCTTCTGTGCTGTAACTTCTTCAAAGAAGTTAGATTTCTGTTTCATTAATTTGCAGCATTATTAACTGAAGCTTATTGATGGCAGTTTTGTTAAAGGTTCGGATGAGGAACGCTTATGCCCCTGAAACAAGGTGCAAAGCGGCTGGCGCTTCGCGTTGCTTAGGTGGCACTTCAGTGCAGACACCAAGGCAATACGGTGTGCGCCTCTTCACCCACGAGCTCCTTCTTGAATAAGACAACACTAAACACTAAACATAGCTGACTAATTGATGTATTAAATACATTAGCTAAGCTCTATGAATGATTTGTCATGATTAAAAATAGGAATTGCTCTATAGGGTGAATTAGGAATAGGAAACTAGAAATCCAGTATAAGAAAATAAGTCAGCATACCTGAAATTAATAAATAAAATTGCAACTATGCATCTGAATCATAAAATTATGGTTTTGCACTAATTTTACAACATATTTACTACTATATCTTCGTTCTTTACCCCTCCTTAGTTTGCTTCCTTCATTTTTTTCTCCCTTGTTCACTCGAACTCACAACTTTCAAGCTGGAAGTGAGGGATGCTTACCATCCGAGCAACTCCCTCCCTTCATATATTACTATATCTATTTTACCTTTTTCATATTTTTCAATTCCGTTATCCATATTTCCATGTTCTGATTTGACATGCTGGGAACTGTTCAATAGTTTTCATTAGCTCTTGTATGTCTTAAGAAGCCTCAAAACAAGCCTAACATTGTTTTTAATTTGTGCATATTATATACTGAAGCGATTCTAGTCTCGGATATAACAGTATCTGGGACTTCATATCTGTTGGTGCATAATAACTAACAAAAGATTCTATCCTCTGTCCACAGTCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAGGTAAGTTTCATATTGCCCCATCTTTTAGTTGCTAGAATCAGGTTCACACTGCTATAATATAGAAATTTAAGCATTTTAAGCATGTCATTGTTTGATGAATTTACGAACTTCATGCTCAGGAGTAGGTATTATGCTTGTCTAGACTTCTGTTATCATTCATACTTGGTAGCATGTCTATCAGTCCTTCTCTAAAGAAAATGCTTCTTCATCAAGCTTTTTAGTTAAATCCAAAATAGGTGTAATGTTCATTTACGTTTACGCTATCTTCTTAACATCCATTAATGTAACTGTTATAATTTAACAAACAGGTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATAT</genome_strand>
        <mrna_strand>GAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAA........................................................................................GTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCG.............................................................................ATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAG....................................................................................................................................................................................................................................................................................................................GTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAAGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257296" ref_strand="+" ref_description="SGN-E257296 [cLEG-46-L23]">
      <seq>gaaattcgagggataagtttctgtatagtccatctataaataatcttcgtgaggaaaaccttgaacactttcagaaacactggggtgaaggtcatcctattatagtacggaatgtgcttcggaattcttctaatttgtcttgggatccagttgttatgttctgcacttaccttgagaaaaggtcaaaatgttccttggataaagaaacagctaaggcacaaaatcactcggactggtgtgaggtggaaatagctagaaaacagatatttatggggtcacttgaatggcaaacacatgcaacaatgcagcgtgaaatagtaaaattcaaagcatggctttcttcccatctattccaagagcaatttcctggtcaccatgctgagatcttgcaggctataccactacaagagtatatgaatccaaaatctggtcttctaaatctagcagttaaattgccaccggaaatgccacaaactgatttaggaccttcaatctatatttcctatggtgggcctgaagaactatcacaagcagaatttatctctaacctatgttgtgaatcatatgatatggttaatattcttgcaagtgctactgatgttcttgcttccangaaacagtaagaaaaataaaatgtttaatgaaaaataagaagccctcagatcacanggaaataccagccattccagtgaccagaaaggaaatcatctctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="42649" stop="39188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42349" g_stop="42108" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42107" i_stop="40359" i_length="1749">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40358" g_stop="40029" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="572" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40028" i_stop="39635" i_length="394">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39634" g_stop="39488" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="716" r_length="144" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E257296" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42349" e_stop="42108"/>
          <exon e_start="40358" e_stop="40029"/>
          <exon e_start="39634" e_stop="39488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAGGTAATTATTTTGATGCTCTCTTCTTTAATTCTCCTCTGGGCCCTTGACAAGAAGTTCCTTCTATCATCACCCTTGACAAGAATTTATCTCTAATTACAAAAGGATGCGATCGAAAATGTATGTTTGGTTCAAACTTGAAATAAGTTAAGACAGAAAGGCTATTCTCCACATTATAACAAAATTTGCACTCTATCCTCAATGGGAAGAAATTTAGGGATAAGTTCATCCAACCTTTTTTTTTTAAATTCAAAATATTGGATGTGTCTGAGATAGCTTGTGTGCACCTTTACCGTTCTACTGATTACCTGATATGTCCTACCAGTATTGGTACTGTGTAACTATGCCCTCCGAGGCTTTGACAGATGGGAAGAAATCAACTATTGTTGATCTCGACCCCTAGTCTCGATACTTTCACCCACTTTTTACCTCTTGGCTACAAAATCAGAAGGATGCATGGACTAAGTTCATGTAAAGGAAAACTGCACTTTTCCTGTTAATAATTGTGATTATGGAAGAGCTGGAGACTTAAGCGGAAGCTGTAGGGTCTTAGTTGTTGTCATATCCTAGATATTCTTATATCTTAAGCATGTTTTTCTTGGTTTATAGAACAAAGATAGATGTCTATGGACTTCTCTCTTTGGTTTAGGACAGTAAGAACTGCTCTCTATTTTATTTTATATGGTAGTCTTAGACAGGACATGAATTTTGATAAAGAAACCAAGAAGGCTCTGACACATAAGGTAAATATATGTAACACAGAAAAGTACCCAAAGAAGCTTATAGTGTTCAGCATATCATGCCAATTCCTCTAAGAGCGTATCATTGAAGGCAAACGAGCGTGTCAAGAGTTAAAGAGTTTCCAAAGATAAAAGGCGTCAATCTTTTCAAAATGGACCAAAAAGGAAATAGTGTCATGTTAAATGTAGGGGGCGGGATAGGATGGGGTAAGTATAGAAAAGGAAGAGAAAATTAATATGATGGATCTATTATGTATATATCTTAGTTTTATTTGCCTTGCACCCTGCATTCTCACCACCTGTAGAAATAGAAAAGGAAGAGAAAATTAATATGATGGATCTATCATCTATTTTTCTTATTTGTATCGCCTTGCACCCTACATTTTCACCACCTGTAGAAATAGAAAAGGAAGACAAAATTAATATGATGGATCTATCATCTATATATTTTATTTGTATTCGCCTTGCTCCCTGCATTCTCACCACCTGTAGAAATAGAAAAGGAAGAGAATTAATACTCCCTCACTTGGCATGGAGTTTAAAATAGTAAAGAAGACTTCTGAATCTTGTGGCCAAGATGCCCTTTAATCATGTGGTCTTAAACATGTCATGTATAAAGTTACAATTAAAGAGTGGCCAAAAAAGGAAAGAGACATCCTTTTCCAAAAGGACTTAAAGGGAAAGTCACAAACAAATTGAAACTGAGGGAGTACTTAATAATTAAAACTTTCGAAAGAGGACGAAAAAAATGTTGTCGGATATTAATCTTAATTCTCACGCTATATAATTAAACAAATGAGAAAAAAAAGAAAAATGTATGGTTGCAATTATGCTACAACATCCTTTTCATCATCTGCTTAATCAAATTTGTTTTCCATCTACCAGTGCTTTGTAAGGAATTATTTTAATTGTGTTGATTTTCTACCTTTTCTTTTGTATATGAGGTAGCCTCTGACAGTGTACATGTTTATGTAAAAACAAATATCATGGCCTGATTATCTGCACTTTGTAGGTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATGGTAGGCCTAATTTTATGCTTATATCTCTATTTATGTTTCATTTTCTTATCTTGACTGCAAACTACTGAACATTGGGACCATCCTGTGTTGTATATTTTCTCTGCGACTGTTTATTCAGAAGAAGAAACACATCTCTGCTTCTGTGAAAGTAATCCTACAAGATTCAGTAATATAGCATGACAAGTTCATAAAAAACATTTAGTGATCCAATCATCCTGAACCTCTTCATACATGCAGCGGGGAAGGAAAATTTAAGTAGATTGAAACTATCCATGTATTATGGCTACCCATAGGGTTCTAAATATGATTCTCTCTTATAGTATAAAGTAAAGAGTGATCTAGCATGTGAGAAGACGATTTAACTTTTGATTCATATTATTTGGATTTTGCTCAGGTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCAAGGAACAAGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCCTCAAGATCACAAGGAAATTACCAGCCATTCCAGTGACCAGAAAGGAAAATCATCTCTGCAT</genome_strand>
        <mrna_strand>GAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATG..........................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCANGAAAC-AGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCCCTCAGATCACANGGAAA-TACCAGCCATTCCAGTGACCAGAAAGG-AAATCATCTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317909" ref_strand="+" ref_description="SGN-E317909 [cTOA-30-G23]">
      <seq>gaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgcccttagcgttcaagtgttgtgaagttgttagatgtggaacggagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaggaaggctagctaatgttgtggataacagtgaaggtcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgacgccacagatttttctgactttgagaaagctcaccataagatgatcgatgtgtcctgngggatcggaggtatcttcattcctgttgtgctgttcatgtcattttgtaactattactatggacaggatgcctcgtctcctgacaagctgtcttttgctgtatgagatgttcaagacgagnatataatacttttgtggtggcagtgatctttggttttggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="57423" stop="55743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57123" g_stop="57058" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56920" g_stop="56336" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="651" r_length="585" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56335" i_stop="56144" i_length="192">
            <donor d_prob="0.640" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56143" g_stop="56043" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="752" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E317909" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57123" e_stop="57058"/>
          <exon e_start="56920" e_stop="56336"/>
          <exon e_start="56143" e_stop="56043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATGGTGAGTACTTTTCTTTGTTTTCTATGATTTATTTTACCTAACGTACAGAATAAGTTCCACACTTTTACTTAATATTTTCAAAGTCTATTACGGGATTTAAAAAAAGCAAGAATTTGTAGTCTATCTTGGTGCATGTTAAAGCATGATCTTGTAGAAATATGTCTTTTTATGCTGTTAATTTATCAATTACAGGACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCAAGACGAG-ATATAAATACTTTTGTGGTGGCAGTGATCTTTGGTTTTGGCT</genome_strand>
        <mrna_strand>GAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG.........................................................................................................................................TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGNGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATG................................................................................................................................................................................................GACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCAAGACGAGNATAT-AATACTTTTGTGGTGGCAGTGATCTTTGGTTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704764" ref_strand="+" ref_description="SGN-E704764 [FA25AG10]">
      <seq>atttttcagaagacgtaaatatgaacccaaaaatgctcaagggactattaaatctaccccaaacataaggacatttttaccattttgtccaaaatttagtacaaaaataacttggcgcgcagagtgcaaaccctagtccgagctcgtctctcccttaccgcggtgctcgagtgtctcgccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgcccttagcgttcaagtgttgtgaagttgttagatgtggaacggagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaggaaggctagctaatgttgtggataacagtgaaggtcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgacgccacagatttttctgactttgagaaagctcaccataagatgatcgatgtgtcctgggggatcggaggtatcttcattcctgttgtgctgttcatgtcattttgtaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="58854" stop="56044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58554" g_stop="58369" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57147" g_stop="57058" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="276" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56920" g_stop="56344" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="853" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E704764" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58554" e_stop="58369"/>
          <exon e_start="57147" e_stop="57058"/>
          <exon e_start="56920" e_stop="56344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTAGTCCAAAGATGGAAATATTACATCAGTACTCGAAAATTGTTTCAGAGAGCTATGTTAATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGCATCAGACTTCGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGCCCCTTACCCCCAGTACTGCTTAAATGTTATACGCTTTTATTTTTATTTTAAAAAGAGAATAAACAGTCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCCTTATGGTGGAACTTTCTCTATATGGCTTGTATAGTTTGCCTGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTA</genome_strand>
        <mrna_strand>ATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG.........................................................................................................................................TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327708" ref_strand="+" ref_description="SGN-E327708 [cTOC-20-M17]">
      <seq>tctcccttaccgcggtgctcgagtgtctcgccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgcccttagcgttcaagtgttgtgaagttgttagatgtggaacggagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaggaaggctagctaatgttgtggataacagtgaaggtcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgacgccacagatttttctgactttgagaaagctcaccataagatgatcgatgtgtcctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="58706" stop="56094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58406" g_stop="58369" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57147" g_stop="57058" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56920" g_stop="56394" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="655" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E327708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58406" e_stop="58369"/>
          <exon e_start="57147" e_stop="57058"/>
          <exon e_start="56920" e_stop="56394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTAGTCCAAAGATGGAAATATTACATCAGTACTCGAAAATTGTTTCAGAGAGCTATGTTAATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGCATCAGACTTCGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGCCCCTTACCCCCAGTACTGCTTAAATGTTATACGCTTTTATTTTTATTTTAAAAAGAGAATAAACAGTCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCCTTATGGTGGAACTTTCTCTATATGGCTTGTATAGTTTGCCTGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGG</genome_strand>
        <mrna_strand>TCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG.........................................................................................................................................TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329075" ref_strand="+" ref_description="SGN-E329075 [cTOC-24-H1]">
      <seq>tctcccttaccgcggtgctcgagtgtctcgccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgcccttagcgttcaagtgttgtgaagttgttagatgtggaacggagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaggaaggctagctaatgttgtggataacagtgaaggtcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgacgccacagatttttctgactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="58706" stop="56132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58406" g_stop="58369" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57147" g_stop="57058" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="128" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56920" g_stop="56432" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="617" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E329075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58406" e_stop="58369"/>
          <exon e_start="57147" e_stop="57058"/>
          <exon e_start="56920" e_stop="56432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTAGTCCAAAGATGGAAATATTACATCAGTACTCGAAAATTGTTTCAGAGAGCTATGTTAATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGCATCAGACTTCGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGCCCCTTACCCCCAGTACTGCTTAAATGTTATACGCTTTTATTTTTATTTTAAAAAGAGAATAAACAGTCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCCTTATGGTGGAACTTTCTCTATATGGCTTGTATAGTTTGCCTGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTG</genome_strand>
        <mrna_strand>TCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG.........................................................................................................................................TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226705" ref_strand="+" ref_description="SGN-E226705 [cLEL-26-H12](-)">
      <seq>ttattggtaacggaaaattctgagtactcaagattgtatgcgacaggacatttgataacatgtcatcttagttggggaacacataatagttctggttccaaatatgcattttgtgtgaatgttttgctttcttttttcttttttttcatggcaactttcaacttctaggagtataaattgtgaaatctccgtatgtaattattcaacttatttctggattgcaaagaatgtaaagttctattcacatagaaggccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="60170" stop="21671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59870" g_stop="59608" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59607" i_stop="58456" i_length="1152">
            <donor d_prob="0.692" d_score="0.90"/>
            <acceptor a_prob="0.895" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58455" g_stop="58445" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="274" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E226705" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59870" e_stop="59608"/>
          <exon e_start="58455" e_stop="58445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGACAAAAAAGGGTATATTGTTCAAGTTCTGAATTCTGATGTACATTCAGTCTTTCCATTGTTCAAGTTCTGGTTTGCCATTCAGATAGAAGAGTGATTCATGTTTTGATGTACTGATTTTGGGCAGTCATGTAATGAAAAAATTACTTGTAAATTTTCCGCGGCAATGAAGTTATACAACTTAATCCAACTTTTTAAGTCGAAAAATAATCTTTTCAGTATTACATATGCTTTATGCCCAATTGTTTCGGATAAATGCTTGCATCCTCTTGTATTACCGCGGCTGTTGGCAGAGAATTAGCCGATGTTTATTCTCCAAATATCGACATTGCTTCTTCTCTGGGAAAAGAAGTTCACGACCCATGAGCCTTCTACCTTCGCGAGATATTGCTCCGTCAGAGTTTTGCTACATTGTAAAAAATTTCTCACTGCTGCCTCTCATAAGAGCCTGTGCCGTGTCTCAGTCCCAGTGTAGCTAATTACATAACAAGCCCTGTAAGGTTCTTTGCTTTGCTTCGAATTAAACCACATGATTCACCGCTTGTGCGGGTCCCATCAATTCTTTGAATGTCATTCTTGCGAATATACTCCCGAGGTGGAATACTTAACGTGTTAGCTATAACATTGCATGGGTCGATATGCACAACACCTAGTATCCATCGTTTACGACTTGGAAACTGGGGTATCTAATCTCATTTGCTCCCCTAGCTTTTGTCTCTCTGTGTAAGTGTCGCCCAATAGAATGTTTTCACCGTTGGTGTTCTTTCTGATCTCTATGCATTTCAACGCCTCACCAGAATTTTCTTTGCCCCGATTATACTCCAGCTTGATAGTTTTCACCACCTGTCCACGATTGAGCCTCGAAATTTGACGACGATCTTAAAAAATCACCTACAGACGAATAGTATGACAAGTCACTCGCACATTAGCTATTGAATTTCTAAAAAGCAGGCGAACCTACAAAATTTTGTAAAAAGAAAATAATTGCATTATATACGTTCAAAGAGAAGTAGAAATTACAATAACTGTACTAACCAAAAAATACAATAGAGGATTAATATGAATATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAA</genome_strand>
        <mrna_strand>TTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATCTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGGCAACTTTCAACTTCTAGGAGTATAAATTGTGAAATCTCCGTATGTAATTATTCAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCTATTCACATAGAAGGCCAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377275" ref_strand="+" ref_description="SGN-E377275 [TUS-19-H6](-)">
      <seq>aaaagctaacaacgatgttaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgataggaagatacgttccactgattaagaaaatcgagcttcaatcacgcaagggcctcatcattgcaaccctctctcgtttctcgtttatcccttgcttctatttcactgcaaaatatggtgatcaaggctggatgatatttctcgtatccttcttgggactcacaaatggttacctcactgtttgtgtcatgacagctgcacctaaaggatacaagggtcctgaggcaaatgcattgggtaacttgctagtgttattcctactagctggtatattttccggtgttgctttggattggttgtggattattggtaacggaaaattctgagtactcaagattgtatgcgacaggacatttgataacatgtcattttagttggggaacacataatagttctggttccaaatatgcattttgtgtgaatgttttgctttcttttttcttttttttcatgtcaactttcaacttctaggagtatgaattgtgaaatctacgtatgtgattatttaacttatttctggattgcaaagaatgtaaagttcaattcacatagaaagacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61027" stop="59310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60812" g_stop="60809" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="165" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60315" g_stop="60057" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="424" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60056" i_stop="59959" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59958" g_stop="59608" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="775" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E377275" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60812" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
          <exon e_start="60315" e_stop="60057"/>
          <exon e_start="59958" e_stop="59608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTACCTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTATCCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTGTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAGGTTTGTGAAATTTTAATTTCTGAATCTATACAAATTGTCAGTTTATAATCATCTGAAATATCACATCATATTTTAACACTTAACTTTGAATTTTGTAGGGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGACAAAAAAGG</genome_strand>
        <mrna_strand>AAAA......................................................................................GCTAACAACGATGTTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAG..................................................................................................GGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377276" ref_strand="+" ref_description="SGN-E377276 [TUS-19-H6]">
      <seq>aatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgataggaagatacgttccactgattaagaaaatcgagcttcaatcacgcaagggcctcatcattgcaaccctctctcgtttctcgtttatcccttgcttctatttcactgcaaaatatggtgatcaaggctggatgatatttctcgtatccttcttgggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="59811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="486" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60315" g_stop="60111" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="691" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E377276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
          <exon e_start="60315" e_stop="60111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTACCTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTATCCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTGTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTC</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238262" ref_strand="+" ref_description="SGN-E238262 [cLED-22-F20]">
      <seq>aatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgataggaagatacgttccactgattaagaaaatcgagcttcaatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="59926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="486" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60315" g_stop="60226" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="576" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E238262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
          <exon e_start="60315" e_stop="60226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTACCTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTATCCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTGTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACG</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238154" ref_strand="+" ref_description="SGN-E238154 [cLED-22-N16]">
      <seq>aatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="59969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="486" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60315" g_stop="60269" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="533" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E238154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
          <exon e_start="60315" e_stop="60269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTACCTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTATCCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTGTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAG</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242152" ref_strand="+" ref_description="SGN-E242152 [cLED-37-H12]">
      <seq>aatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgaattgaacttgtacttgatttatgtcctcactttatctattttccccggattcttgtatgaaaacactggtactcaccaattgggatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="60262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60562" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="486" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E242152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242825" ref_strand="+" ref_description="SGN-E242825 [cLED-31-B18]">
      <seq>aatggttggagatatagctttcatgtgccccaagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcaacttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaacaactgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="60393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60809" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="325" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60722" g_stop="60693" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="355" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E242825" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60809"/>
          <exon e_start="60722" e_stop="60693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGT</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCAAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAACTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231281" ref_strand="+" ref_description="SGN-E231281 [cLED-5-H12]">
      <seq>aatggttggagatatagctttcatgtgccccgagtttatgcaatcgttttttggtggtgttgctgcatctggtgcacttacctctggtttaaggctaataaccaaagcagcttttgaaaacagtaacaatggccttcgcaaaggagttatgttgttccttgctatctccgcattctttgaattcctatgcatccttctatattcattcgtattccctaagctaccaattgtgaagcactaccgttcaaaggcagctgcagaaggatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="61602" stop="60564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61302" g_stop="61260" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61179" g_stop="61074" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60984" g_stop="60864" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="270" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E231281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61302" e_stop="61260"/>
          <exon e_start="61179" e_stop="61074"/>
          <exon e_start="60984" e_stop="60864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAAGTGCGTAGCAGTAACATTTTTAATTTTGTTTGCTATATGAAACTTTGAATTATGTTTGTACTGATTCATGAATTATGCAGTCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTAGTAAGTAATTCTGATCTCATTATTGAAAGTTAAATAAAAAACAGTTTGAGTTTTTCCGAATCAGAAACTTACAATTGTTGATTTCGCAGTGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAAC</genome_strand>
        <mrna_strand>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA................................................................................TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA.........................................................................................TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710804" ref_strand="+" ref_description="SGN-E710804 [FA56DB07]">
      <seq>ccgctcgtctctcccttaccgcggtgctcgagtgtctcgccgacttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgccctttgcgttcaagtgttgtgaagttgttagatgtggaacagagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaagaaggctagctaatgttgtggataaccagtgaagttcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgatgccacagatttttcctgactttgacaaagcctcgccataagatgatccatgtgtcctgggggttcggaggtatcttcattcctgttgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="71975" stop="69271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71677" g_stop="71631" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71630" i_stop="70355" i_length="1276">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70354" g_stop="70265" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="137" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70264" i_stop="70126" i_length="139">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70125" g_stop="69569" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="697" r_length="560" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E710804" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71677" e_stop="71631"/>
          <exon e_start="70354" e_stop="70265"/>
          <exon e_start="70125" e_stop="69569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTCTAAATGTCTTTGAAGGGATGGTTGATAAAGATGGAAATAACATCAGCACCCGAAAATTGTTTCAAAGAGCTATGTTTATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGTATCAGGCTTGGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGTCCCTTACCCCCAGTACTGCTTAAATGTTATAGGCTTTTATTTTTATTTTTAAAAAGAGAATAAACAATCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCATTATGGTGGAACTTTCTATATATGGCTTGTATAGTTTGCCTTGGGTTACTACTTAGGTTTGGGAAGTTGATTTTAGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAA-CAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATGCCACAGATTTTT-CTGACTTTGAGAAAG-CTCGCCATAAGATGATCGATGTGTCCTGGGGGTTCGGAGGTATCTTCATTCCTGTTGTGCTG</genome_strand>
        <mrna_strand>CCGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG...........................................................................................................................................TCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACCAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATGCCACAGATTTTTCCTGACTTTGACAAAGCCTCGCCATAAGATGATCCATGTGTCCTGGGGGTTCGGAGGTATCTTCATTCCTGTTGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340664" ref_strand="+" ref_description="SGN-E340664 [cTOF-1-H3]">
      <seq>ccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgccctttgcgttcaagtgttgtgaagttgttagatgtggaacagagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaagaaggctagctaatgttgtggataacagtgaagttcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgatgccacagatttttctgactntgagaaagctcgccataagaatgatcgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="70660" stop="69308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70354" g_stop="70265" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="98" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70264" i_stop="70126" i_length="139">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70125" g_stop="69608" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="617" r_length="519" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E340664" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70354" e_stop="70265"/>
          <exon e_start="70125" e_stop="69608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATGCCACAGATTTTTCTGACTTTGAGAAAGCTCGCCATAAG-ATGATCGATGTG</genome_strand>
        <mrna_strand>GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG...........................................................................................................................................TCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATGCCACAGATTTTTCTGACTNTGAGAAAGCTCGCCATAAGAATGATCGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340564" ref_strand="+" ref_description="SGN-E340564 [cTOF-1-C3]">
      <seq>ccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgccctttgcgttcaagtgttgtgaagttgttagatgtggaacagagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttttggctgattcgttcatacacattggcatggcaaaatcaagaattacaaaaatgaacgtgctcatcatgaatttgatgcgaagttataaatatttaagagaagaaacaagaaatctaatggaatttgaccgaagcaagaaaagaaggctagctaatgttgtggataacagtgaagttcctgtcatggacatggactcttttattgccagaactaagactatttgtgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="70660" stop="69358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70354" g_stop="70265" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="98" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70264" i_stop="70126" i_length="139">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70125" g_stop="69658" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="566" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E340564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70354" e_stop="70265"/>
          <exon e_start="70125" e_stop="69658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATG</genome_strand>
        <mrna_strand>GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG...........................................................................................................................................TCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337964" ref_strand="+" ref_description="SGN-E337964 [cTOE-14-G5]">
      <seq>cgcggtgctcgagtgtctcgccgagttggacatagagaaattgatgatattggaagtcttcaacatattggtttcctcatggctggaacagaacatataactattgattgtattgaagtcccttcacgccctttgcgttcaagtgttgtgaagttgttagatgtggaacagagaaggaatgcattaaatcaaatgaactgggacttggaacgacaagcacttgaggttgtatctaaactagagcagcataccctctttcttttcgcatggacaggaggaattagtatctacctaaccaccagtataccttctgctatggcctttgccatgtctattctattgatgtgtttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="71958" stop="69589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71658" g_stop="71631" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71630" i_stop="70355" i_length="1276">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70354" g_stop="70265" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="118" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70264" i_stop="70126" i_length="139">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70125" g_stop="69889" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="355" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E337964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71658" e_stop="71631"/>
          <exon e_start="70354" e_stop="70265"/>
          <exon e_start="70125" e_stop="69889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGGTGCTCGAGTGTCTCGCCGAGTTGGTACGTAATGACGCTCCATATTAGCTCTTTCAATAGCATAATGTTGCATAGTACCAGTTACTCTGTTGTGTTGATATATGCATACATGTCTTTCTAAGTAGTTCTATTTCTGTATGTTGAACCTTACATGAAAACTAGGGTTATTATCTATAAGTTTGTTTTTTTAACTTTATAAGGCATTTTGTTGCAACTGACGGAAGGACCTCATGAAAAAATTGGAGGTACTCATATTTTGCTCTATTTTTGGCCGTAGATTTGAAGTTGAAACTTCAAAAATTCGAGTTTCTAAGTTGTGGTTTGTGAAACTTGGAAGTTGAGTTTGGACAAGCATTTGGCACCTAACTTGAGGGCTTAAGTGTGCCTCAAACGAGTCTTTTACAACACTTGTTGTATCCAGGGTTTTTTTATTCGTGTTAAGTGTTGAAAAATTTCATGTGTTTGACTCTTATTTCTGTTAGCTACTATGTGGTATCAGTTTTATGAGGACACGGCAAATTATATATTTTCTTTGCATTTGACATATGGAGTTCGTCCTGCGTTTCTACTTGTGTTCTCTCCCTTACTATTCATGACAACCGTAGTGTTTAATGACATATGCTATCTGTTTATCTTTTGAAAATTTAGTCTCCAGGTTATAAGCAAAAGACTTGGCATATTAAGCTCAATAAGTCAATGAGGGTGTCTTCTTGGTAATTCAGCAAATGTTGCTCATAATACCAATTTACCCAAAGCATTGCAGCTATTATTTGTTGCAAATATACAGTTATTTGGTAGCTAACAGTACTGACTTTTGAGGTTATAAATTAAATATTTTAACAATTGATGTGTGCGAGTTAGATTCAAGATTCTTCTGTGTACTTTTTCCCTTTAATTTCTAAATGTCTTTGAAGGGATGGTTGATAAAGATGGAAATAACATCAGCACCCGAAAATTGTTTCAAAGAGCTATGTTTATAGTGAGTTGCATAGCACCAATCCCATGGGTGCGTATCAGGCTTGGTAGATAGCTTCATCTACTCAAGTTCTGGAATAAGTCCCTTACCCCCAGTACTGCTTAAATGTTATAGGCTTTTATTTTTATTTTTAAAAAGAGAATAAACAATCATCTGTAAAGCTGGAAAAGTTAATAGAAACATACATTTCTTTCATTATGGTGGAACTTTCTATATATGGCTTGTATAGTTTGCCTTGGGTTACTACTTAGGTTTGGGAAGTTGATTTTAGTGTTTGACTATTTTGACTAAACAAATTTGCATTTTTTCTTATCGCTGGAATAGGACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAGGTCAGAAACATATTAACTTAGACACATGCAAATAATAAATATTCAGTTCTAGTCTATGATATACGAAATTTAGTTCCCTAAAGTTGCTTGCTTCTTTTGTTTGTTTTTTCTCTTTTTCTTTTTTTTTTTCATTTGATAGTCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTT</genome_strand>
        <mrna_strand>CGCGGTGCTCGAGTGTCTCGCCGAGTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG...........................................................................................................................................TCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239923" ref_strand="+" ref_description="SGN-E239923 [cLED-29-O13]">
      <seq>actgttgcagctgacttggctgctgcaggcattggaattcaaccaatggaaaaagctaacaacgatgctaagcaatcagaacgtctgaccaccaaacaattgcttctccagaacattgattatgtattgaacttgtacttgatttatgtcctcactttatctattttccctggattcttgtatgaaaacactggtactcaccaattgggatcatggtaccctctagttctgatagcaatgtacaatgtttgggatctgataggaagatacgttccactgattaagaaaatcgagcttcaatcacgcaagggcctcatcattgcaaccctctctcgtttctcgtttatcccttgcttctatttcactgcaaaatatggtgatcaaggctggatgatatttctcgtatccttcttgggactcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="74431" stop="59806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74131" g_stop="74078" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74077" i_stop="73992" i_length="86">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73991" g_stop="73831" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="215" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73830" i_stop="73585" i_length="246">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73584" g_stop="73375" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="425" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E239923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74131" e_stop="74078"/>
          <exon e_start="73991" e_stop="73831"/>
          <exon e_start="73584" e_stop="73375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAAGTAGGCAACTTTTTCTCCTCAACTAAAACATGTTAATAAGTGATATTCATGATCATAAATTTGATATGTTTCTGTTTACTGAACAGGCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGTATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCTGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATGGTAAGTGTGCATAACTCCTTTTTTTCTGTTACTTTATCTGCACTAACTTTTGAATTTCTTTTTTTCAAGATGTCTTGGTTGGATGGTTTTAACCAACTCCATGTGAATGTGATCGATCGTTCATAACACCAAATTAAAATTCAAAAGACATGCTGTTTTGTATTATCTTTTTCGTGTGCAGAGTCAAGTTAATTTCATGGTCTACTAGTTGAATGACTGATAATATCTTCTTTTCTTAAATCTCAGGTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAA</genome_strand>
        <mrna_strand>ACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA......................................................................................GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGTATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCTGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG......................................................................................................................................................................................................................................................GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727504" ref_strand="+" ref_description="SGN-E727504 [LA14DF01]">
      <seq>cgatttctttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgccggtccgggtctggagcgtgggcgatccgaagtatcgtctattgtttctgaagttccggattacttgttcgggctggacaattccgatgacccgccccgcgaatcgaaattcgtgaagaacaagataatttcggagccgggctcacccgctccacccattgtttcttctccttattgctctatttcatcatcatcaatgacacctacagcagctatgacagtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82941" stop="86037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83239" g_stop="83359" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85737" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="879" r_length="758" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E727504" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83239" e_stop="83359"/>
          <exon e_start="84980" e_stop="85737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGC</genome_strand>
        <mrna_strand>CGATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322541" ref_strand="+" ref_description="SGN-E322541 [cTOB-26-L5]">
      <seq>tttctttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttcccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgcccggtccgggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82942" stop="85824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83242" g_stop="83359" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85524" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="665" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E322541" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83242" e_stop="83359"/>
          <exon e_start="84980" e_stop="85524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTT-CCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCG-CCGGTCCGGGTCTGG</genome_strand>
        <mrna_strand>TTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCCGGTCCGGGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322294" ref_strand="+" ref_description="SGN-E322294 [cTOB-24-I21]">
      <seq>tttctttctttctttccaacaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82942" stop="85801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83242" g_stop="83359" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85501" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="639" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E322294" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83242" e_stop="83359"/>
          <exon e_start="84980" e_stop="85501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAA</genome_strand>
        <mrna_strand>TTTCTTTCTTTCTTTCCAAC-AACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320305" ref_strand="+" ref_description="SGN-E320305 [cTOB-21-H12]">
      <seq>tttctttctttctttccacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctgggttcagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82942" stop="85796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83242" g_stop="83359" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85496" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="634" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E320305" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83242" e_stop="83359"/>
          <exon e_start="84980" e_stop="85496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCT</genome_strand>
        <mrna_strand>TTTCTTTCTTTCTTTCC-ACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGGTTCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544363" ref_strand="+" ref_description="SGN-E544363 [TUS-66-K13]">
      <seq>ctttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgccggtccgggtctggagcgtgggcgatccgaagtatcgtctattgtttctgaagttccggattacttgttcgggctggacaattccgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82945" stop="85901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83245" g_stop="83359" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85601" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="737" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E544363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83245" e_stop="83359"/>
          <exon e_start="84980" e_stop="85601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGAC</genome_strand>
        <mrna_strand>CTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544370" ref_strand="+" ref_description="SGN-E544370 [TUS-66-K17]">
      <seq>ctttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggctttcgcagaatcaagaaaacggctcggcttcgtctcatccttttccctaacgattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82945" stop="85725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83245" g_stop="83359" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85425" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="562" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E544370" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83245" e_stop="83359"/>
          <exon e_start="84980" e_stop="85425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATC-AGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTG</genome_strand>
        <mrna_strand>CTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTTCGCAGAATCAAGAAAACGGCTCGGCTTCGTCTCATCCTTTTCCCTAACGATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306071" ref_strand="+" ref_description="SGN-E306071 [cLEY-13-M9]">
      <seq>tttctttgtttgcaacagtcatttcatcactttcaccttttgcagcacggaattgcatcacaattaatactcttttaaatcttgagacacctaagagttacaagtctccatcatagcgatgagtgggtctatttacgcgccgtcagagttcgactccggcaacggcgattcagtagcctccacacctctctcggagcggcgccaccgggacatgtactctcttactttcgatacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcatgccacacgacaggtcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82946" stop="85665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83246" g_stop="83359" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85365" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="501" r_length="387" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E306071" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83246" e_stop="83359"/>
          <exon e_start="84980" e_stop="85365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACA-ATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATC</genome_strand>
        <mrna_strand>TTTCTTTGTTTGCAACAGTCATTTCATCACTTTCACCTTTTGCAGCACGGAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCTAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTTACGCGCCGTCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCTCTCGGAGCGGCGCCACCGGGACATGTACTCTCTTACTTTCGATACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCATGCCACACGACAGGTCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307414" ref_strand="+" ref_description="SGN-E307414 [cLEY-12-K10]">
      <seq>tttctttctttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaacccgatgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82946" stop="85637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83246" g_stop="83359" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85337" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="473" r_length="359" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E307414" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83246" e_stop="83359"/>
          <exon e_start="84980" e_stop="85337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAA-CCGATGAAGAT</genome_strand>
        <mrna_strand>TTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCCGATGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302162" ref_strand="+" ref_description="SGN-E302162 [cLEW-19-F12]">
      <seq>tttccaacaaacatttcatcactttcttcttttgcagtccaaaattgcatcacaattaatactcttttaaatcttgagacaccaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacacctcgctcggagcaccaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattgtgctcaggccacacgacaatcaacttcgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82954" stop="85748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83254" g_stop="83359" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84980" g_stop="85448" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="575" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E302162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83254" e_stop="83359"/>
          <exon e_start="84980" e_stop="85448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGC</genome_strand>
        <mrna_strand>TTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294272" ref_strand="+" ref_description="SGN-E294272 [cLET-14-B4](-)">
      <seq>tgatgatgaaatagagcaataaggagaagaaccaatgggtggagcgggtgagcccggctccgaaattatcttgttcttcacgaatttcgattcgcggggcgggtcatcggaattgtccagcccgaacaagtaatccggaacttcagaaacaatagacgatacttcggatcgcccacgctccagacccggaccggcgccaccattgagagcgtcaacaaaccattgctctcgcttagatgagccgtcgaggatggagctgatagtgctggctctggaaccagaatcgttagggaaaaggaagagacgaagccgagccgatttctgattctgcgtaagccgatcgtactcttccatcatattctccaaatcttcatcggttgtgacggttatcaaagcatccagttcctcgttaggaagctggtacttgatgttaatgtttggatatccgatgagtttggagagttttccaaggagagctgcgaaggtagtgtggcggttcaccccaacaattcgagtatcgccgccgacgtaacgaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="86003" stop="84865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85703" g_stop="85165" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E294272" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85703" e_stop="85165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGAAATAGAGCAATAAGGAGAAGAAACAATGGGTGGAGCGGGTGAGCCCGGCTCCGAAATTATCTTGTTCTTCACGAATTTCGATTCGCGGGGCGGGTCATCGGAATTGTCCAGCCCGAACAAGTAATCCGGAACTTCAGAAACAATAGACGATACTTCGGATCGCCCACGCTCCAGACCCGGACCGGCGCCACCATTGAGAGCGTCAACAAACCATTGCTCTCGCTTAGATGAGCCGTCGAGGATGGAGCTGATAGTGCTGGCTCTGGAACCAGAATCGTTAGGGAAAAGGAAGAGACGAAGCCGAGCCGATTTCTGATTCTGCGTAAGCCGATCGTACTCTTCCATCATATTCTCCAAATCTTCATCGGTTGTGACGGTTATCAAAGCATCCAGTTCCTCGTTAGGAAGCTGGTACTTGATGTTAATGTTTGGATATCCGATGAGTTTGGAGAGTTTTCCAAGGAGAGCTGCGAAGGTAGTGTGGCGGTTCACCGCAACAATTCGAGTATCGCCGCCGACGTAACGAAGTT</genome_strand>
        <mrna_strand>TGATGATGAAATAGAGCAATAAGGAGAAGAACCAATGGGTGGAGCGGGTGAGCCCGGCTCCGAAATTATCTTGTTCTTCACGAATTTCGATTCGCGGGGCGGGTCATCGGAATTGTCCAGCCCGAACAAGTAATCCGGAACTTCAGAAACAATAGACGATACTTCGGATCGCCCACGCTCCAGACCCGGACCGGCGCCACCATTGAGAGCGTCAACAAACCATTGCTCTCGCTTAGATGAGCCGTCGAGGATGGAGCTGATAGTGCTGGCTCTGGAACCAGAATCGTTAGGGAAAAGGAAGAGACGAAGCCGAGCCGATTTCTGATTCTGCGTAAGCCGATCGTACTCTTCCATCATATTCTCCAAATCTTCATCGGTTGTGACGGTTATCAAAGCATCCAGTTCCTCGTTAGGAAGCTGGTACTTGATGTTAATGTTTGGATATCCGATGAGTTTGGAGAGTTTTCCAAGGAGAGCTGCGAAGGTAGTGTGGCGGTTCACCCCAACAATTCGAGTATCGCCGCCGACGTAACGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294271" ref_strand="+" ref_description="SGN-E294271 [cLET-14-B4]">
      <seq>aacttcgttacgtcggcggcgatactcgaattgttggggtgaaccgccacactaccttcgcagctctccttggaaaactctccaaactcatcggatatccaaacattaacatcaagtaccagcttcctaacgaggaactggatgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggcttacgcagaatcagaaatcggctcggcttcgtctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgccggtccgggtctggagcgtgggcgatccgaagtatcgtctattgtttctgaagttccggattacttgttcgggctggacaattccgatgacccgccccgcgaatcgaaattcgtgaagaacaagataatttcggagccgggctcacccgctccacccattggttcttctccttattgctctatttcatcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="84865" stop="86003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85165" g_stop="85703" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E294271" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85165" e_stop="85703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCA</genome_strand>
        <mrna_strand>AACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGGGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGGTTCTTCTCCTTATTGCTCTATTTCATCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549030" ref_strand="+" ref_description="SGN-E549030 [TUS-66-K13](-)">
      <seq>ggggctggacaattccgatgacccgcccccgcgaatcgaaattcgtgaagaacaagataatttcggagccgggctcacccgctccaccccattgtttcttctccttattgctctatttcatcatcatcaatgacacctacagcagctatgacagtgatgccggatcttccaccggttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaagcaaagtttcgtgaatggtaaataaattgtagtaattgataatctatcctccaactttaatatgtaagtatttgattagtaaaaaagcatttaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85281" stop="86707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85580" g_stop="86410" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E549030" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85580" e_stop="86410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCTGGACAATTCCGATGACCCG-CCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCA-CCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTT</genome_strand>
        <mrna_strand>GGGGCTGGACAATTCCGATGACCCGCCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539315" ref_strand="+" ref_description="SGN-E539315 [TUS-59-A6](-)">
      <seq>ctgtgacagtgatgccggatcttccaccggttaaaacaaagctcgataacccaaatccgacagctgaatccagagaaactccggttgcgagtgtgactgaaaccggtgaaaggtcggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaagcaaagtttcgtgaatggtaaataaattgtagtaattgataatctatcctccaactttaatatgtaagtatttgattagtaaaaaagcatttaagcaaagtaacttctcaatgtttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85423" stop="86726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85723" g_stop="86433" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E539315" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85723" e_stop="86433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAGGTTTTG</genome_strand>
        <mrna_strand>CTGTGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAACCCAAATCCGACAGCTGAATCCAGAGAAACTCCGGTTGCGAGTGTGACTGAAACCGGTGAAAGGTCGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539319" ref_strand="+" ref_description="SGN-E539319 [TUS-59-A8](-)">
      <seq>ctatgacagtgatgccggatcttccaccggttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaagcaaagtttcgtgaatggtaaataaattgtagtaattgataatctatcctccaactttaatatgtaagtatttgattagtaaaaaagcatttaagcaaagtaacttctcaatgtttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85423" stop="86726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85723" g_stop="86433" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E539319" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85723" e_stop="86433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAGGTTTTG</genome_strand>
        <mrna_strand>CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539318" ref_strand="+" ref_description="SGN-E539318 [TUS-59-A6]">
      <seq>ctatgacagtgatgccggatcttccaccggttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcaattaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcacggatccggatgtgatggaatgtcgggtcgggtctcccaatgatcaaacgtttgattgagaagcatatcttgtgtgctaccgtttgtgttaatcattttgatataatttgaagcaaaagtttcctgaatcgcaaataaattgtagtaattgataatctatcctccaactgtaatatgttagtatttgattagtaaaaaagcatttgagcaaagtatcttctcaatgattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85423" stop="86726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85723" g_stop="86432" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E539318" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85723" e_stop="86432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGC-AAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAGGTTTT</genome_strand>
        <mrna_strand>CTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAATTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCACGGATCCGGATGTGATGGAATGTCGGGTCGGGTCTCCCAATGATC-AAACGTTTGATTGAGAAGCATATCTTGTGTGCTACCGTTTGTGTTAATCATTTTGATATAATTTGAAGCAAAAGTTTCCTGAATCGCAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTGTAATATGTTAGTATTTGATTAGTAAAAAAGCATTTGAGCAAAGTATCTTCTCAATGATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284033" ref_strand="+" ref_description="SGN-E284033 [cLER-13-I5]">
      <seq>tatgacagtgatgccggatcttccaccggttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85424" stop="86605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85724" g_stop="86305" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E284033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85724" e_stop="86305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAG</genome_strand>
        <mrna_strand>TATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306080" ref_strand="+" ref_description="SGN-E306080 [cLEY-13-B13]">
      <seq>ttaaaacaaagctcgataaaccaaatccgacagctgaatccagagaaacaccggttgcgagtgcgactgaaaccggtgaaaggacggttcaacagcaacaacagagttatccaagtagtccactatggcattacccagcaccaccggtgcaaaccatacccgtttactatgtccctggttcggttcagccaggaaatatcccggttcaacccattacattaagggctccatatattcatccttttccagttcctccgaatcaattacccgtcgggtatccacccgcttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcanggatccggaggtgatggaatgtcnggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85453" stop="86571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85753" g_stop="86271" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E306080" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85753" e_stop="86271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTA</genome_strand>
        <mrna_strand>TTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCANGGATCCGGAGGTGATGGAATGTCNGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544369" ref_strand="+" ref_description="SGN-E544369 [TUS-66-K17](-)">
      <seq>ccggttcaagtatgggccaagtatatagtggattgaggccggtaatgagtgttgacccgaatgaattaagagttgttactgaaggaatgaattactatgcagttaggaattcaggagttgttccgggttacggaggtccagttagcgaagaaatgcagggatccggaggtgatggaatgtcgggtcgggtctcccaatgatcaaaaggtttgattgagaagcatattttgtgtgctaccgtttgtgttaatcattttgttttaatttgaagcaaagtttcgtgaatggtaaataaattgtagtaattgataatctatcctccaactttaatatgtaagtatttgattagtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="85735" stop="86690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86035" g_stop="86390" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E544369" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86035" e_stop="86390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAA</genome_strand>
        <mrna_strand>CCGGTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280044" ref_strand="-" ref_description="SGN-E280044 [cLEL-7-B19](-)">
      <seq>gcacgagcgacgccgtttcagctctctttgccaacgagtccgatcacatgccgtcgtttctcgacttcacatccaccgatgtgcgcttttcccttcgccgccattctgttttccttatttctcaagtacaaagttcttacaaatttgatggctatattgcatacctcgccgtcaattacattgatcgttttctctccaaacaagcagttctggagaataagccatggattgtacggattctcgtcattgttagcctttctcttgccgcaaaaatgaggaacgtcgatttatcactgacggatattcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="91756" stop="92888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92049" g_stop="92173" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92174" i_stop="92331" i_length="158">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92332" g_stop="92418" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="212" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92419" i_stop="92492" i_length="74">
            <donor d_prob="0.732" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92493" g_stop="92588" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="308" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E280044" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280044" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92049" e_stop="92173"/>
          <exon e_start="92332" e_stop="92418"/>
          <exon e_start="92493" e_stop="92588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATTTCGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCAAATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAAGTAAATACTCTTCATAATTTTACACTGCTTTCGTCCTACTCGGTTTTGCATTTTCAGAGTTAAATTGAACTATGTTAACTTTTCTAAAAATCAAAATTATATCAATAGTATAGTAATTTGCAGTTAATTGTAGGTCTAACTGGTTGTGATTTTTGCAGGTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTGGTAAACGGAGTTCATTTCATTCGTGTACTGAAATTGTAGAAAATCTTCTGAGAATTGTATGAAACTTACTTCAGGAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGTCGGATATTCAG</genome_strand>
        <mrna_strand>GCACGAGCGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCACATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAA..............................................................................................................................................................GTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTG..........................................................................GAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGACGGATATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578379" ref_strand="+" ref_description="SGN-E578379 [LE12DB06]">
      <seq>tttttttcaaagaagctaatgacaatatgtctttattccaaaattcaaacaccctgctaaaatcagcataataacaacgttttctctctctaagccccactcggacattattattcatcactcttagcctctctggaaagtggcaaagctaaatacaggaagcttctcttcttccgccttttttttccctattggcactgactgcacataaaactacaaatttatgtaaatattcagcttcacagtactcccttatctttgttcaccccctccagttccaaagaacaaagattctttgaatagtctataacataaaagtacaaataggcgaattttctctacacaattatgctaatagtgaaacctatagagattgtgcatctaattagttgcaattctacactctgctttagtttagagttcaattcattcaaagatcctccacgtatctgttcccactcgaacaaaactgctatgcatgagacaacaaaatcaatgaaaacaaaatagggacgctggttcactgtcttactatcttagcaccactgaacctgagaaatctggaacgtttgatcatcccttatatcgctcaatctccgctttttgatattgtccttatcctgagtctcgcattgagagcttgtatgttcacactccagaacactttttggcgtcaacttactacagtactccctcccttctatcggcatttcccgcattacagccaaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="94492" stop="93158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94192" g_stop="93458" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E578379" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94192" e_stop="93458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</genome_strand>
        <mrna_strand>TTTTTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366247" ref_strand="+" ref_description="SGN-E366247 [cLPT-1-K6]">
      <seq>acgatcatgagggaagaatacaacttggagccttcaatggaccattatggggcaatggttgacctaattggtcgagctggtcggctgagtgaggcttggaacttcattgataatatgcctaccagaccaggactcaatgtctatggtgcaatgttgggagcttgcaagattcacaaaaatgtagaattgggggagaaggcagcagacaaactatttgagctagatcccgatgatggtggatatcatgtgcttcttgctaatatgtacgccacggcttcaatatggcataaagttgctaatgtcagaactatgatggagagaaaaggtattcaaaagacacctggatggagtctagttgatttaagaaacgaggtccacacattctactcaggaagcactagccatcctcagtcagagaagatctatgcttaccttgagaaactgtttgataggattaaagctgctggatatatacctgatactaattcaattcacgatgtggaagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="97238" stop="96128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96938" g_stop="96428" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E366247" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96938" e_stop="96428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTG</genome_strand>
        <mrna_strand>ACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGAATTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCACGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTAATTCAATTCACGATGTGGAAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699676" ref_strand="+" ref_description="SGN-E699676 [FA10DE10]">
      <seq>ccctttaaaaacttgaaaggaaaaacacttgtttcatggaatgctttgattttgggctatgcacaaaatggatgtgtaatggatgcattaactcatttttgtgaaatgcatctgcagaacatcacacctgattcatttacaatggtaagtgttgttactgctcttgctgagttatcagtattacgccaagctaagtggatacatggatttgctgtaagaacttgtttgaacgggaatgtttttgtagccactgcacttgttgacatgtatgcaaaatgtggagcagttcacacagcaacaaagctatttgacatgatggatgataggcatgttacaacatggaatgccatgatagatggatatggcacacatggctttggaaaggaagctgttgaattatttgaggaaatgagaaaggggcatgtagagcctaacgacataacatttctctgtgtcatctcagcttgcagccactctggctttgtacacaaggggcgcaactatttcacgatcctgagggaagaatacaacttgcagccttcaatggaccattatggggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="97742" stop="96583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97445" g_stop="96883" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E699676" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97445" e_stop="96883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAAGAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTAGACAAGGGGCGCAACTATTTCACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAAT</genome_strand>
        <mrna_strand>CCCTTTAAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAACAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTACACAAGGGGCGCAACTATTTCACGATCCTGAGGGAAGAATACAACTTGCAGCCTTCAATGGACCATTATGGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330047" ref_strand="+" ref_description="SGN-E330047 [cTOD-5-I11]">
      <seq>taaatgtgggtcagtgttcactgcttggttggtttttgataagatggaggctaagacggctgtatcattgaatgctatgatagatggatatgcacggaatggatatcacgatgaagctcttatcatctttcagaaaatgttggatgaaggattcaaaccaacgaatgtgactattatgagcactttacatgcgtgtgctgaaacaaggaatattgagcttggacaatatgttcacaaactggtcaaccaactaggtcttggttctaatgttgcagttgttaactcgttgatttcaatgtattgcaagtgccaaagagtggatattgcagctgaattgttcgaaaacttgaaaggaaaaacacttgtttcatggaatgctttgattttgggctatgcacaaaatggatgtgtaatggatgcattaactcatttttgtgaaatgcatctgcagaacatcacacctgattcatttacaatggtaagtgttgttactgctcttgctgagttaatcagtataacgccaagctaagtggatacatggatttgctgtaagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="98079" stop="96923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97779" g_stop="97223" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E330047" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97779" e_stop="97223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGTGGGTCAGTGGGCACTGCTAGGTTGGTTTTTGATAAGATGGATTCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTTGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTT-ATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTT</genome_strand>
        <mrna_strand>TAAATGTGGGTCAGTGTTCACTGCTTGGTTGGTTTTTGATAAGATGGAGGCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTCGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTAATCAGTATAACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243882" ref_strand="+" ref_description="SGN-E243882 [cLED-35-I18]">
      <seq>aaagaagcactgctttttatatgttggtggtgcttttataatattagttggagtatatatgggttatcaccgcacaaaaatgagaaacaagttcaatatcagaggtgatagttctttggatgattgcatcttccatttgacctgtccgtgctgcaccttatctcaggaagctagaacattagagatgaacaatgtccaagatggcatttggcatggtagaggtgataccatatgcgtaggaagttattctgaacctggcaggaccccatttgaactaagtccgcctgctgttgtgtcaacaaagtcctgaaccatgaactctacagagggcttaggacacaaaaaggaatgacaatacggggttagcagttaattctagagtagagcatccttcacattgttctctaccttgaaaagccaagcctacaagcgcggtcctgaattagcaacattctttttccagaacagaagaatctcattagacttgcccattcatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="100823" stop="99120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100523" g_stop="100421" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100045" g_stop="99983" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="166" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99754" g_stop="99420" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="501" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E243882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100523" e_stop="100421"/>
          <exon e_start="100045" e_stop="99983"/>
          <exon e_start="99754" e_stop="99420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGAGTGAGTACTTTCATCCCTATTTTCGCTTTTACTGCTACTTTTCAGTTCTTCCTATTTGATCATATTCCAAGAGTTGCACAAACTATTTGTGGGAATTGGTTATATTATCGTATAGCTTGTTATCTTTCTCTAGTTTTAGCAATGATTTCTCTGCATTCCAGTTTTTACAAATAACAATCTATCTTTGGTTTTCCCTTCTTAACCTACCCTCTTTATTGGTTTTTACATTCTCATATCTTCTCTTGTATTTTGAGCTACTGAAACACTGATGAGTGTTAACAATTATGGGAGGACAATAGTATTAATTTTACTTGCATCTATTATTGTTCTTCTTTAACTGTTGTGATAACTCTTGCTCTTTTTATGCTTCTTTAGGGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAGGTTCGTTCTATTATTCAACCTGCATTAATTAACAACAAAGTAGTGTTTATTTGCCTTGTCGCGTGAAGTTGCTTGCTGCTTTTTCTCTCACCCCTCAGTCCCCAGGGGAAGAGCGAATAGGTTGACTCAGAAAAACACCAATCTAACAGGACCTGCAGTTTTTGAAGTTAGATGACACAGTTTGCTTTATTATTCGGTTTTGAATTTTTTTTTTGTTTTATTGAACAGGAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATAC</genome_strand>
        <mrna_strand>AAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA.......................................................................................................................................................................................................................................................................................................................................................................................GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAG....................................................................................................................................................................................................................................GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301423" ref_strand="+" ref_description="SGN-E301423 [cLEX-8-G20]">
      <seq>agccaccatatcctcctctaaaaataaaaataaaaatagactataattatgttccacaatatcccttatttaccaaattaactctttatatataaactctgtctcaatctcaactattttaatcatatatctctatatctcttccgttctgctcggcacaaatatttccgcttaatccatactctgttcgtttgtataaactttttgataatttttggaagagtgcagccagataatggatgtgtttgaaaagagagaaatggcggcggagaaagcaagaggaagggaggaggaggaagagggagaggggcagaggttgttgtcggaaggggtgactgtggtggattttgatttgttgtgttccacggtggcgatgcaggcacaaaaggggcagtgggtgaagttaaatttgaatggggatgaagaaaatgctatgggttatgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="102474" stop="101426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102174" g_stop="101726" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E301423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102174" e_stop="101726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATG</genome_strand>
        <mrna_strand>AGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746292" ref_strand="+" ref_description="SGN-E746292 [GI|47104762]">
      <seq>cttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagtggtttgggcctggtgaggcctgccatgaagacgtaacttgctgtataccagtttgcttattagagatagtggggctttgtatggtgtgttgtaatatggtatatcatcttctaccctgaaaactgagtattttcttgtatcgtctttatttaactgcagctccgcgaaagcaacttatatcctttccaattcactagtaatatttcattctataattgtttgaaacttgttcctcaaaaaaaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108940" stop="105635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108640" g_stop="108323" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="105935" g_length="877"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="1195" r_length="877" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1196" polyA_stop="1214"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E746292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108640" e_stop="108323"/>
          <exon e_start="106811" e_stop="105935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTCAA</genome_strand>
        <mrna_strand>CTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552825" ref_strand="+" ref_description="SGN-E552825 [cTSB-5-C22]">
      <seq>ccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagtggtttgggcctggtgaggcctgccatgaagacgtaacttgctgtataccagtttgcttattagagatagtggggctttgtatggtgtgttgtaatatggtatatcatcttctaccctgaaaactgagtattttcttgtatcgtctttatttaactgcagctccgcgaaagcaacttatatcctttccaattcactagtaatatttcattctataattgtttgaaaaananaaaaanaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="106949" stop="105647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106649" g_stop="105947" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="734"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E552825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106649" e_stop="105947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAA</genome_strand>
        <mrna_strand>CCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552885" ref_strand="+" ref_description="SGN-E552885 [cTSB-5-F22]">
      <seq>ccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagtggtttgggcctggtgaggcctgccatgaagacgtaacttgctgtataccagtttgcttattagagatagtggggctttgtatggtgtgttgtaatatggtatatcatcttctaccctgaaaactgagtattttcttgtatcgtctttatttaactgcagctccgcgaaagcaacttatatcctttccaattcactagtaatatttcattctataattgtttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="106949" stop="105647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106649" g_stop="105947" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="716"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E552885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106649" e_stop="105947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAA</genome_strand>
        <mrna_strand>CCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274003" ref_strand="+" ref_description="SGN-E274003 [cLEN-8-G24]">
      <seq>taagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="106979" stop="105872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106679" g_stop="106172" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E274003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106679" e_stop="106172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGT</genome_strand>
        <mrna_strand>TAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703554" ref_strand="+" ref_description="SGN-E703554 [FA21DC11]">
      <seq>attgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgcagaaaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaaaatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcccatggagataatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108882" stop="105907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108582" g_stop="108323" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106207" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="865" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E703554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108582" e_stop="108323"/>
          <exon e_start="106811" e_stop="106207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTG</genome_strand>
        <mrna_strand>ATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344588" ref_strand="+" ref_description="SGN-E344588 [cTOF-14-O1]">
      <seq>gttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaatgtgcagaaaaatttgtggctgttgacaagttttgcgtggtctgtgacaaacatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108871" stop="105971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108571" g_stop="108323" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106271" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="788" r_length="539" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E344588" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108571" e_stop="108323"/>
          <exon e_start="106811" e_stop="106271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAA</genome_strand>
        <mrna_strand>GTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAG-AATGTGCAGAAAAATTTGTGGCTGTTGACAAGTTTTGCGTGGTCTGTGACAAA-CATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379977" ref_strand="+" ref_description="SGN-E379977 [TUS-1-H6]">
      <seq>gatgccgcagagacactcgaagaacacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgcaagaaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108862" stop="106026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108562" g_stop="108323" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106326" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="725" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E379977" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108562" e_stop="108323"/>
          <exon e_start="106811" e_stop="106326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGC</genome_strand>
        <mrna_strand>GATGCCGCAGAGACACTCGAAGAAC-ACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E718145" ref_strand="+" ref_description="SGN-E718145 [FC03DD03]">
      <seq>aatcggccgaattgacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatacttgtggacatgtcttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108946" stop="106037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108654" g_stop="108323" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106337" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="808" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E718145" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108654" e_stop="108323"/>
          <exon e_start="106811" e_stop="106337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGG-ATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214308" ref_strand="+" ref_description="SGN-E214308 [cLEC-77-J20]">
      <seq>gttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtcccagttgcaaggtcacactaaccaatactttgtcacttgtagcacttaatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108871" stop="106054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108571" g_stop="108323" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106354" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="707" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E214308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108571" e_stop="108323"/>
          <exon e_start="106811" e_stop="106354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTT</genome_strand>
        <mrna_strand>GTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335252" ref_strand="+" ref_description="SGN-E335252 [cTOE-1-A16]">
      <seq>tagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgtnccagttgcaaggtcacactaaccaatactttgtcacttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108935" stop="106066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108635" g_stop="108323" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106366" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="759" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E335252" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108635" e_stop="108323"/>
          <exon e_start="106811" e_stop="106366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAG</genome_strand>
        <mrna_strand>TAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTNCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348344" ref_strand="+" ref_description="SGN-E348344 [cTOF-27-N14]">
      <seq>taatccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacacttcactgaagatacaagtgcacagaagaaacacaagtctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108947" stop="106126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108647" g_stop="108323" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106426" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="711" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E348344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108647" e_stop="108323"/>
          <exon e_start="106811" e_stop="106426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTG</genome_strand>
        <mrna_strand>TAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311028" ref_strand="+" ref_description="SGN-E311028 [cLEZ-17-F17]">
      <seq>aaagatttaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgatgccagaaagggcatgtcttttgcaaagaatgcattctagaatgcctttgtgcccagaaaaaggatattcaaagaaagttcgctgctcatacaggtcaccacaagcaagaaaaagaagaggaagaggataggttgatgctgtataaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgtcctctgcaacaccagatgcacctgctaaggaggaagccccatccactagcacaacttgtcctgaagggagggaagaaattaagatgaaaaaccttttccctatacactacactgaagatacaagtgcacagaagagacacaagtctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108762" stop="106126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108462" g_stop="108323" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106426" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="526" r_length="386" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E311028" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108462" e_stop="108323"/>
          <exon e_start="106811" e_stop="106426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTG</genome_strand>
        <mrna_strand>AAAGATTTAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGATGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTGTGCCCAGAAAAAGGATATTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCGCTGCTCATACAGGTCACCACAAGCAAGAAAAAGAAGAGGAAGAGGATAGGTTGATGCTGTATAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGTCCTCTGCAACACCAGATGCACCTGCTAAGGAGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAGAAATTAAGATGAAAAACCTTTTCCCTATACACTACACTGAAGATACAAGTGCACAGAAGAGACACAAGTCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340880" ref_strand="+" ref_description="SGN-E340880 [cTOF-5-A21]">
      <seq>gataatccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggaggggaaaaattagatgaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108949" stop="106183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108649" g_stop="108323" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106483" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="654" r_length="327" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E340880" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108649" e_stop="108323"/>
          <exon e_start="106811" e_stop="106483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACC</genome_strand>
        <mrna_strand>GATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGC-ACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGGAAAAATT-AGATGAAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391895" ref_strand="+" ref_description="SGN-E391895 [TUS-24-O3]">
      <seq>cttcatagggtttttcttcttccccaaattcataaaattcgtcttccagattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgaaaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcggggggatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccactagcacaacttgtcctgaagggaggggaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108940" stop="106197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108640" g_stop="108323" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106496" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="634" r_length="316" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E391895" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108640" e_stop="108323"/>
          <exon e_start="106811" e_stop="106496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATT</genome_strand>
        <mrna_strand>CTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAGATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAAAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCGGGGGGATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGGAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246722" ref_strand="+" ref_description="SGN-E246722 [cLEF-45-F5]">
      <seq>ataatccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaaagcccatccactagcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108948" stop="106221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108648" g_stop="108323" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106521" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="617" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E246722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108648" e_stop="108323"/>
          <exon e_start="106811" e_stop="106521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAAC</genome_strand>
        <mrna_strand>ATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAAGCCCATCCACTAGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246707" ref_strand="+" ref_description="SGN-E246707 [cLEF-45-O6]">
      <seq>ttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgataagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108939" stop="106252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108639" g_stop="108323" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106552" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="577" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E246707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108639" e_stop="108323"/>
          <exon e_start="106811" e_stop="106552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTG</genome_strand>
        <mrna_strand>TTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297503" ref_strand="+" ref_description="SGN-E297503 [cLET-28-K8]">
      <seq>ttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtacaatgattagaactacaacagagacaaaaatggattccatggagctaacagtgtgaaagctacttcttatgaggaggaagcacttagaaccatgaaagcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108870" stop="106281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108570" g_stop="108323" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106581" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="479" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E297503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108570" e_stop="108323"/>
          <exon e_start="106811" e_stop="106581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTG</genome_strand>
        <mrna_strand>TTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATTAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315047" ref_strand="+" ref_description="SGN-E315047 [cTOB-4-O20]">
      <seq>tccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtccaatgataagaactacaacagagacaaaaatggattccatggagctaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108944" stop="106334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108644" g_stop="108323" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106634" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="500" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E315047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108644" e_stop="108323"/>
          <exon e_start="106811" e_stop="106634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGT</genome_strand>
        <mrna_strand>TCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTCCAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274973" ref_strand="+" ref_description="SGN-E274973 [cLEN-16-I13]">
      <seq>aagatgccgtagagacactctaagaacaacaacgatcttgccttctttacctacgatgagaagacaaagctcgggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattccatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgcctgttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagacgaggaagaggagaggttgatgctgcataaagccatggatcttgatgcatttgatcaacaaaatcatgggccagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108864" stop="106394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108564" g_stop="108323" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106694" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="360" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E274973" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108564" e_stop="108323"/>
          <exon e_start="106811" e_stop="106694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTT</genome_strand>
        <mrna_strand>AAGATGCCGTAGAGACACTCTAAGAACAACAACGATCTTGCCTTCTTTACCTACGATGAGAAGACAAAGCTCGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCCATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTGTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGACGAGGAAGAGGAGAGGTTGATGCTGCATAAAGCCATGGATCTTGATGCATTTGATCAACAAAATCATGGGCCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312377" ref_strand="+" ref_description="SGN-E312377 [cTOA-5-P11]">
      <seq>ttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagccagaaaaagaagaggaagaggagaggttgatgctgcanaaagccagggatcttgatgcatttgatcaacaaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108939" stop="106403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108639" g_stop="108323" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106703" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="426" r_length="109" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E312377" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108639" e_stop="108323"/>
          <exon e_start="106811" e_stop="106703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCAT</genome_strand>
        <mrna_strand>TTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCCAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCANAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200763" ref_strand="+" ref_description="SGN-E200763 [cLEC-9-C18]">
      <seq>gatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccaggggatcttgatgcattttgatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108862" stop="106411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108562" g_stop="108323" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106711" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="343" r_length="103" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E200763" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108562" e_stop="108323"/>
          <exon e_start="106811" e_stop="106711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCA-GGGATCTTGATGCA-TTTGATCAAC</genome_strand>
        <mrna_strand>GATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGGATCTTGATGCATTTTGATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260232" ref_strand="+" ref_description="SGN-E260232 [cLEG-53-G14]">
      <seq>taacctctcttcttccccaaaggtcccaagaactcaaacaatacacaatcgaatcggattcgaacatcacaaaacacacaatatctctctgaattcttcaataccaattccgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatccgaccgcccactcacggcgatcatgcaccaaccggcatctcctcgtttccatttaggaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtccgtccaacttcggtactttatggagctgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctcagccacttgtggaggctaatattccattcaagattcatattgtgaaggatcatgatatgaaggaaaagttgtgttttggaagatgagaagttggggtttgagtgctgttataatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109662" stop="110865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109962" g_stop="110565" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E260232" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109962" e_stop="110565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTG-TTTGGAAGTTGAGAGGTT-GGGTTTGAGTGCTGTTATAATGGGG</genome_strand>
        <mrna_strand>TAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAAGTTGTGTTTTGGAAGATGAGAAGTTGGGGTTTGAGTGCTGTTATAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304886" ref_strand="+" ref_description="SGN-E304886 [cLEX-10-E2]">
      <seq>tctcttcttccccaaaggtcccaagaactcaaacaatacacaatcgaatcggattcgaacatcacaaaacacacaatatctctctgaattcttcaataccaattccgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatccgaccgcccactcacggcgatcatgcaccaaccggcatctcctcgtttccatttaagaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtccgtccaacttcggtactttatggagctgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctcagccacttgtggaggctaatattccattcaagattcatattgtgaaggatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109667" stop="110804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109967" g_stop="110504" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E304886" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109967" e_stop="110504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGA</genome_strand>
        <mrna_strand>TCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAAGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303768" ref_strand="+" ref_description="SGN-E303768 [cLEX-4-E20]">
      <seq>tcttcttccccaaaggtcccaagaactcaaacaatacacaatcgaatcggattcgaacatcacaaaacacacaatatctctctgaattcttcaataccaattccgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatccgaccgcccactcacggcgatcatgcaccaaccggcatctcctcgtttccatttaggaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtccgtccaacttcggtactttatggagctgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109669" stop="110750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109969" g_stop="110450" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E303768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109969" e_stop="110450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCA</genome_strand>
        <mrna_strand>TCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256579" ref_strand="+" ref_description="SGN-E256579 [cLEG-38-B13]">
      <seq>gcttccccaaaggtcctatagaactcaaacaatacacaatcgaatcgggtggcgaacatcacaaaacacacaatatctctctgaattcttcaataccaagtgcgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatcctaccgaccactcaccgcgatcatacaccaaccggcatctcctcgtttccatttaggaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtacgtccaacttctgaactatattgaactgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109673" stop="110751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109972" g_stop="110451" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E256579" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109972" e_stop="110451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCCCAAAGGTCCCA-AGAACTCAAACAATACACAATCGAATCGGAT-TCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAG</genome_strand>
        <mrna_strand>GCTTCCCCAAAGGTCCTATAGAACTCAAACAATACACAATCGAATCGGGTGGCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAAGTGCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCTACCGACCACTCACCGCGATCATACACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTACGTCCAACTTCTGAACTATATTGAACTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262399" ref_strand="+" ref_description="SGN-E262399 [cLEG-56-A14]">
      <seq>ttccccaaaggtcccaagaactcaaacaatacacaatcgaatcggattcgaacatcacaaaacacacaatatctctctgaattcttcaataccaattccgtatttatctatttacaccagcatgacatcacccaaaaagccaccaccagaatccgaccgcccactcacggcgatcatgcaccaaccggcatctcctcgtttccatttaggaactccgaattccggtgctaatcggaaggttgctatcgccgtcgatcttagcgacgaaagtgcttatgccgtcaaatgggctgtgcaaaattatctccgaccaggtgacgccgttatactccttcacgtccgtccaacttcggtactttatggagctgattggggtgctattgatgtttctgttgacactgcaaatgaagaatcacagcggaaactggaagatgattttgataacttcacaactacgaaatcgaatgatttagctcagccacttgtggaggctaatattccattcaagattcatattgtgaaggatcatgatatgaaggaaaggttgtgtttggaagttgagaggttgggtttgagtgctgttataatgggagtaanaaggtttggtgcatcaaggcgtagcccgaaaggagggatgcttggtagtgtgagtgattattgtgtgcatcattgtggttgcccccgttgttgttgttagatatcctgatgataaagatgctactactggcaatgactcgggtcacagatgtgcttcaccctggtacctgaggaggagcctatataccatgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="109674" stop="111064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109974" g_stop="110764" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="SGN-E262399" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109974" e_stop="110764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAATGGGGAGT-AGAGGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGTTTG-CCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTC-GGTCACAGATGTGCTTCACCCT-GTACCTGAGGAGGAGCCTATATACCATGATGCCT</genome_strand>
        <mrna_strand>TTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAAT-GGGAGTAANAAGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGGTTGCCCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTCGGGTCACAGATGTGCTTCACCCTGGTACCTGAGGAGGAGCCTATATACCATGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715943" ref_strand="+" ref_description="SGN-E715943 [FB15CG09]">
      <seq>gtccaaacacattcagttaagaaaggtgctggacaaaacagcggtgcaactaaaaatggaaaaacagaaaaccaagtggtggcaacaaaaaagagggaaaagaagaaaccccttcctagagaggaaattgcaaaagctagggaggagaagaggaaagcacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="114296" stop="113080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113996" g_stop="113857" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113856" i_stop="113750" i_length="107">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113749" g_stop="113381" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="509" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="523"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E715943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113996" e_stop="113857"/>
          <exon e_start="113749" e_stop="113381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG...........................................................................................................GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221952" ref_strand="+" ref_description="SGN-E221952 [cLEL-10-J14](-)">
      <seq>aattgcaaaagctagggagcagaataggaaagctacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaaccaacttgggaatgagcaatggaaattataaaggcaaaagggtagtttgtattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="114051" stop="113080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113871" g_stop="113857" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113856" i_stop="113750" i_length="107">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113749" g_stop="113381" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="385" r_length="370" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="404"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E221952" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113871" e_stop="113857"/>
          <exon e_start="113749" e_stop="113381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGC-ACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>AATTGCAAAAGCTAG...........................................................................................................GGAGCAGAATAGGAAAGCTACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCAACTTGGGAATGAGCAATGGAAATTATAAAGGCAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221703" ref_strand="+" ref_description="SGN-E221703 [cLEL-10-J13](-)">
      <seq>aaaagcctcgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="114013" stop="113080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113713" g_stop="113381" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="352"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E221703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113713" e_stop="113381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>AAAAGCCTCGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221542" ref_strand="+" ref_description="SGN-E221542 [cLEL-10-J14](-)">
      <seq>gatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgagaattataaagggaaaagggtagtttgtattcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="114004" stop="113081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113704" g_stop="113381" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="343"/>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="SGN-E221542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113704" e_stop="113381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAGAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>82</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6614" PGL_stop="7183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6614" e_stop="7183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6614" e_stop="7183" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6614" stop="7183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTCCCCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</gDNA_template>
            <first_frame> K  N  F  F  P  *  F  Q  D  F  L  F  V  S  L  T  V  K  L  S  P  P  K  L  L  Q  L  *  R  Y  *  C  W  *  A  S  F  R  Y  L  F  H  C  V  Q  W  V  F  F  K  S  H  V  H  *  N  N  I  L  E  E  G  D  S  M  R  Y  F  S  V  C  Y  S  S  M  S  V  H  I  S  E  T  I  *  V  E  F  I  I  P  E  T  I  *  S  G  Y  *  L  N  *  L  S  S  S  Y  L  Y  N  I  R  F  L  L  Y  L  K  K  L  I  I  H  S  S  L  L  D  F  F  D  H  T  L  F  Q  L  L  K  S  I  *  D  D  Y  I  C  H  *  S  A  *  L  V  L  *  S  T  T  K  H  Q  H  T  L  L  L  C  R  K  F  V  F  *  Q  Y  F  V  I  S  L  C  G  I  I  I  I  *  F  I  F </first_frame>
            <second_frame>  R  T  F  F  L  D  F  R  I  S  Y  L  C  L  *  L  L  S  F  P  H  Q  N  C  C  N  Y  R  D  T  S  A  G  R  H  L  S  D  T  Y  F  I  V  Y  N  G  F  S  S  K  V  M  F  T  R  I  I  F  W  R  R  G  T  L  C  D  I  L  V  S  A  I  L  Q  C  Q  S  T  Y  L  K  L  F  E  *  S  S  *  Y  L  K  L  F  D  Q  D  I  D  *  I  S  C  L  R  V  T  Y  I  T  S  D  S  C  Y  T  *  K  S  L  *  S  T  V  R  Y  L  T  S  L  T  T  H  Y  F  S  Y  *  N  P  S  K  M  I  I  F  V  I  D  L  L  D  *  S  C  E  A  P  Q  N  T  N  T  P  F  F  C  V  G  N  L  F  F  S  S  I  L  L  L  A  Y  V  E  L  S  L  S  N  S  F   </second_frame>
            <third_frame>   E  L  F  S  L  I  S  G  F  L  I  C  V  S  N  C  *  A  F  P  T  K  I  A  A  T  I  E  I  L  V  L  V  G  I  F  Q  I  L  I  S  L  C  T  M  G  F  L  Q  K  S  C  S  L  E  *  Y  S  G  G  G  G  L  Y  A  I  F  *  C  L  L  F  F  N  V  S  P  H  I  *  N  Y  L  S  R  V  H  N  T  *  N  Y  L  I  R  I  L  I  K  L  V  V  F  E  L  L  I  *  H  Q  I  L  V  I  L  E  K  A  Y  N  P  Q  F  V  T  *  L  L  *  P  H  I  I  S  V  I  E  I  H  L  R  *  L  Y  L  S  L  I  C  L  I  S  L  V  K  H  H  K  T  P  T  H  P  S  S  V  *  E  I  C  F  L  A  V  F  C  Y  *  L  M  W  N  Y  H  Y  L  I  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6660" stop="6869"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFPHQNCCNYRDTSAGRHLSDTYFIVYNGFSSKVMFTRIIFWRRGTLCDILVSAILQCQSTYLKLFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19609" PGL_stop="20587"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19609" e_stop="19665"/>
            <exon e_start="19763" e_stop="19892"/>
            <exon e_start="20046" e_stop="20587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19609" e_stop="19665" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19763" e_stop="19892" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="20046" e_stop="20587" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19609" stop="19665"/>
              <exon start="19763" stop="19892"/>
              <exon start="20046" stop="20587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19609" stop="19665"/>
              <exon start="19763" stop="19892"/>
              <exon start="20046" stop="20463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19610" stop="19665"/>
              <exon start="19763" stop="19892"/>
              <exon start="20046" stop="20348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGC</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  S  Q  I  I  F  K  K  I  K  *  F  A  K  T  N  C  H  K  W  S  K  I  T  K  F  K  I  F  Q  L  *  V  Q  P  H  V  F  H  F  L  V  M  K  L  N  S  C  S  H  Q  L  Q  Q  K  *  R  I  S  H  Q  I  L  K  T  L  V  T  H  K  I  I  V  K  L  L  M  M  M  S  G </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N  P  K  *  S  S  R  K  S  N  N  L  P  K  P  I  A  T  N  G  P  K  *  P  N  S  R  F  F  N  Y  K  Y  N  P  M  C  S  I  F  *  S  *  S  S  T  H  A  A  T  N  Y  N  K  N  R  G  F  L  I  R  S  *  K  L  W  *  L  T  K  *  L  S  S  Y  *  *  *  *  V   </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L  I  P  N  N  L  Q  E  N  Q  I  I  C  Q  N  Q  L  P  Q  M  V  Q  N  N  Q  I  Q  D  F  S  T  I  S  T  T  P  C  V  P  F  S  S  H  E  A  Q  L  M  Q  P  P  I  T  T  K  I  E  D  F  S  S  D  L  E  N  F  G  N  S  Q  N  N  C  Q  V  I  N  D  D  E  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19611" stop="19665"/>
                    <exon start="19763" stop="19892"/>
                    <exon start="20046" stop="20586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFLIPNNLQENQIICQNQLPQMVQNNQIQDFSTISTTPCVPFSSHEAQLMQPPITTKIEDFSSDLENFGNSQNNCQVINDDEW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="20752" PGL_stop="21058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20752" e_stop="21058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="20752" e_stop="21058" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20752" stop="21058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20869" stop="21022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTGAAAAACAAAAAACAAAAAAAAAAGGTTACTTCTTTTAGTTTAGTGCATAATTTTTATTTTGTTGACCTTATTTCTATCACGAGT</gDNA_template>
            <first_frame> T  Y  F  N  N  S  S  S  T  T  T  E  D  E  R  D  S  Y  C  S  N  M  L  N  F  D  N  I  P  N  I  W  D  T  T  N  E  F  M  *  F  L  R  F  F  F  F  K  G  T  N  K  Q  F  E  R  G  V  L  F  F  F  F  T  S  E  L  L  D  M  L  L  F  P  E  K  Q  K  T  K  K  K  G  Y  F  F  *  F  S  A  *  F  L  F  C  *  P  Y  F  Y  H  E  </first_frame>
            <second_frame>  L  T  S  T  I  A  A  A  Q  L  L  K  M  K  E  I  A  T  A  A  T  C  *  T  L  I  I  F  Q  I  S  G  I  L  L  M  N  L  C  N  F  Y  A  F  F  F  L  K  E  Q  T  N  S  S  K  E  V  F  Y  F  F  F  L  P  L  S  F  W  T  C  C  C  F  L  K  N  K  K  Q  K  K  K  V  T  S  F  S  L  V  H  N  F  Y  F  V  D  L  I  S  I  T  S </second_frame>
            <third_frame>   L  L  Q  Q  *  Q  Q  H  N  Y  *  R  *  K  R  *  L  L  Q  Q  H  V  E  L  *  *  Y  S  K  Y  L  G  Y  Y  *  *  I  Y  V  I  F  T  L  F  F  F  *  R  N  K  Q  T  V  R  K  R  C  F  I  F  F  F  Y  L  *  A  F  G  H  V  V  V  S  *  K  T  K  N  K  K  K  R  L  L  L  L  V  *  C  I  I  F  I  L  L  T  L  F  L  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20822" stop="21058"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLIIFQISGILLMNLCNFYAFFFLKEQTNSSKEVFYFFFLPLSFWTCCCFLKNKKQKKKVTSFSLVHNFYFVDLISITS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35138" PGL_stop="36194"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35138" e_stop="35343"/>
            <exon e_start="35492" e_stop="35553"/>
            <exon e_start="35687" e_stop="35727"/>
            <exon e_start="35867" e_stop="36194"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.387" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35138" e_stop="35343" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.387" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35344" i_stop="35491" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35492" e_stop="35553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35554" i_stop="35686" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35687" e_stop="35727" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35728" i_stop="35866" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35867" e_stop="36194" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35138" stop="35343"/>
              <exon start="35492" stop="35553"/>
              <exon start="35687" stop="35727"/>
              <exon start="35867" stop="36194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCGGCGAGGTCGGTAGATCCTCTAGTGGTCGGAAAGGTGATCGGAGATGTTTTGGACATGTTTGTTCCGGTGGTTGACTTTACGGTGGAGTATGCTTCCAAACAAATATCGAATAATGGAGTTGAAATTAAGCCAGCAGAAGCTGCACAAAAGCCTAGAGTTCATATAAAGGGTTCTCTTCATTCTAATAATCTTTACACCCTT : GTTATGGCTGATCCAGATGCTCCTAGTCCAAGTGAACCGACTTTTAGAGAATGGCTCCATTG : GATTGTCACGGATATTCCTGAGGGAGGTGATGCCTCTCAAG : GGAGGGAGATGGTGGAATATATGGGACCGAAGCCACCGGCAGGGATACATCGATACGTGTTCACTCTGTTTAGGCAGAAGGAGGCGGAGCAAGTGCCCCATAAACCACCACAAGGGCGATCCAATTTCAAGACTCGACAGTTTGCAAGTGACAATGGACTTGATCTTCCTGTGGCTGCACTGTACTTTAATTCACAAAAGGAACATGCTGCTCATCACTAGCTCTTTACAATGTGTGCTGCTATATATAGCAATGTAATTACTACCTTATGCTTGTTAGCTAGTATTGCAAGTGCTTTGCATATATAGAGTTATGTATACTTGTGTTT</gDNA_template>
            <first_frame> L  R  R  G  R  *  I  L  *  W  S  E  R  *  S  E  M  F  W  T  C  L  F  R  W  L  T  L  R  W  S  M  L  P  N  K  Y  R  I  M  E  L  K  L  S  Q  Q  K  L  H  K  S  L  E  F  I  *  R  V  L  F  I  L  I  I  F  T  P  L :   L  W  L  I  Q  M  L  L  V  Q  V  N  R  L  L  E  N  G  S  I   : G  L  S  R  I  F  L  R  E  V  M  P  L  K  :  G  G  R  W  W  N  I  W  D  R  S  H  R  Q  G  Y  I  D  T  C  S  L  C  L  G  R  R  R  R  S  K  C  P  I  N  H  H  K  G  D  P  I  S  R  L  D  S  L  Q  V  T  M  D  L  I  F  L  W  L  H  C  T  L  I  H  K  R  N  M  L  L  I  T  S  S  L  Q  C  V  L  L  Y  I  A  M  *  L  L  P  Y  A  C  *  L  V  L  Q  V  L  C  I  Y  R  V  M  Y  T  C  V  </first_frame>
            <second_frame>  F  G  E  V  G  R  S  S  S  G  R  K  G  D  R  R  C  F  G  H  V  C  S  G  G  *  L  Y  G  G  V  C  F  Q  T  N  I  E  *  W  S  *  N  *  A  S  R  S  C  T  K  A  *  S  S  Y  K  G  F  S  S  F  *  *  S  L  H  P   : C  Y  G  *  S  R  C  S  *  S  K  *  T  D  F  *  R  M  A  P  L  :  D  C  H  G  Y  S  *  G  R  *  C  L  S  R :   E  G  D  G  G  I  Y  G  T  E  A  T  G  R  D  T  S  I  R  V  H  S  V  *  A  E  G  G  G  A  S  A  P  *  T  T  T  R  A  I  Q  F  Q  D  S  T  V  C  K  *  Q  W  T  *  S  S  C  G  C  T  V  L  *  F  T  K  G  T  C  C  S  S  L  A  L  Y  N  V  C  C  Y  I  *  Q  C  N  Y  Y  L  M  L  V  S  *  Y  C  K  C  F  A  Y  I  E  L  C  I  L  V  F </second_frame>
            <third_frame>   S  A  R  S  V  D  P  L  V  V  G  K  V  I  G  D  V  L  D  M  F  V  P  V  V  D  F  T  V  E  Y  A  S  K  Q  I  S  N  N  G  V  E  I  K  P  A  E  A  A  Q  K  P  R  V  H  I  K  G  S  L  H  S  N  N  L  Y  T  L  :  V  M  A  D  P  D  A  P  S  P  S  E  P  T  F  R  E  W  L  H  W :   I  V  T  D  I  P  E  G  G  D  A  S  Q   : G  R  E  M  V  E  Y  M  G  P  K  P  P  A  G  I  H  R  Y  V  F  T  L  F  R  Q  K  E  A  E  Q  V  P  H  K  P  P  Q  G  R  S  N  F  K  T  R  Q  F  A  S  D  N  G  L  D  L  P  V  A  A  L  Y  F  N  S  Q  K  E  H  A  A  H  H  *  L  F  T  M  C  A  A  I  Y  S  N  V  I  T  T  L  C  L  L  A  S  I  A  S  A  L  H  I  *  S  Y  V  Y  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35140" stop="35343"/>
                    <exon start="35492" stop="35553"/>
                    <exon start="35687" stop="35727"/>
                    <exon start="35867" stop="36087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SARSVDPLVVGKVIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSLHSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGGDASQGREMVEYMGPKPPAGIHRYVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEHAAHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="39187" PGL_stop="36790"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39187" e_stop="39110"/>
            <exon e_start="39021" e_stop="38949"/>
            <exon e_start="38871" e_stop="38786"/>
            <exon e_start="37582" e_stop="37463"/>
            <exon e_start="37154" e_stop="36790"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.507" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39187" e_stop="39110" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.959">
            <gDNA_intron_boundary i_start="39109" i_stop="39022" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39021" e_stop="38949" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.897">
            <gDNA_intron_boundary i_start="38948" i_stop="38872" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38871" e_stop="38786" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.507">
            <gDNA_intron_boundary i_start="38785" i_stop="37583" i_length="1203"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37582" e_stop="37463" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37462" i_stop="37155" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37154" e_stop="36790" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39187" stop="39110"/>
              <exon start="39021" stop="38949"/>
              <exon start="38871" stop="38786"/>
              <exon start="37582" stop="37463"/>
              <exon start="37154" stop="36903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37055" stop="36790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATGTCCCAAAGCTTCTAGAGTACCTCAAAAGGCATTCTAGCGAGTTCACCTCAATGCGTGGTTATTCCAAACAA : GTTGTTCACCCAATTCTTGATCAAAGTTTCTTCTTTGATGCATTCCACAAAATGAGGCTTAAGGAGGAATTCG : ATGTTCAACCTTGGACTTTTGAACAACATCTTGGAGAAGCTATTATCATCCCTGCTGGATGTCCATATCAAGTCAAACAACTTAAG : TCATGTATCAACGTTGTTTTGCACTTCATCTCCCCTGAAAACGTCGCTGAATGTATAAACGTAACTGATGAAATTCGTCTACTTCCTGAGCACCACAAGGCCAGGGGAAAAGTGCTGGAG : GTGAAGAAAATGGTTATCTGTGGGATGAAGAATGCAATTGCAGAAATTCGCAACCTCACGCATAGCAAACAGTCCTCTTGAAAGATGATAGACAAAACTGATTTGATGCAGATCTCGTAGACTTTGCAGGTTCGTGCTTACATACTGCTAGGGAGTAGAATCTAGTTCTTTTTTATGACAAAGGAGGGATGACTGGATACTGATTGCTTAAGATCTTTGTCACTTGGCAAAGATTTACTTATGTGTATATATGTTAGAACCATTAAGGTGTAACTCATAGATCTACTCAGTGACAGATTTAACTCATAAAAAGGCAATGTAAACATATGCTACTATTTAATACTGCATTCTACATGCTTTGATAG</gDNA_template>
            <first_frame> E  D  V  P  K  L  L  E  Y  L  K  R  H  S  S  E  F  T  S  M  R  G  Y  S  K  Q  :  V  V  H  P  I  L  D  Q  S  F  F  F  D  A  F  H  K  M  R  L  K  E  E  F   : D  V  Q  P  W  T  F  E  Q  H  L  G  E  A  I  I  I  P  A  G  C  P  Y  Q  V  K  Q  L  K  :  S  C  I  N  V  V  L  H  F  I  S  P  E  N  V  A  E  C  I  N  V  T  D  E  I  R  L  L  P  E  H  H  K  A  R  G  K  V  L  E  :  V  K  K  M  V  I  C  G  M  K  N  A  I  A  E  I  R  N  L  T  H  S  K  Q  S  S  *  K  M  I  D  K  T  D  L  M  Q  I  S  *  T  L  Q  V  R  A  Y  I  L  L  G  S  R  I  *  F  F  F  M  T  K  E  G  *  L  D  T  D  C  L  R  S  L  S  L  G  K  D  L  L  M  C  I  Y  V  R  T  I  K  V  *  L  I  D  L  L  S  D  R  F  N  S  *  K  G  N  V  N  I  C  Y  Y  L  I  L  H  S  T  C  F  D   </first_frame>
            <second_frame>  K  M  S  Q  S  F  *  S  T  S  K  G  I  L  A  S  S  P  Q  C  V  V  I  P  N  K :   L  F  T  Q  F  L  I  K  V  S  S  L  M  H  S  T  K  *  G  L  R  R  N  S  :  M  F  N  L  G  L  L  N  N  I  L  E  K  L  L  S  S  L  L  D  V  H  I  K  S  N  N  L  S :   H  V  S  T  L  F  C  T  S  S  P  L  K  T  S  L  N  V  *  T  *  L  M  K  F  V  Y  F  L  S  T  T  R  P  G  E  K  C  W  R :   *  R  K  W  L  S  V  G  *  R  M  Q  L  Q  K  F  A  T  S  R  I  A  N  S  P  L  E  R  *  *  T  K  L  I  *  C  R  S  R  R  L  C  R  F  V  L  T  Y  C  *  G  V  E  S  S  S  F  L  *  Q  R  R  D  D  W  I  L  I  A  *  D  L  C  H  L  A  K  I  Y  L  C  V  Y  M  L  E  P  L  R  C  N  S  *  I  Y  S  V  T  D  L  T  H  K  K  A  M  *  T  Y  A  T  I  *  Y  C  I  L  H  A  L  I  </second_frame>
            <third_frame>   R  C  P  K  A  S  R  V  P  Q  K  A  F  *  R  V  H  L  N  A  W  L  F  Q  T   : S  C  S  P  N  S  *  S  K  F  L  L  *  C  I  P  Q  N  E  A  *  G  G  I  R :   C  S  T  L  D  F  *  T  T  S  W  R  S  Y  Y  H  P  C  W  M  S  I  S  S  Q  T  T  *   : V  M  Y  Q  R  C  F  A  L  H  L  P  *  K  R  R  *  M  Y  K  R  N  *  *  N  S  S  T  S  *  A  P  Q  G  Q  G  K  S  A  G   : G  E  E  N  G  Y  L  W  D  E  E  C  N  C  R  N  S  Q  P  H  A  *  Q  T  V  L  L  K  D  D  R  Q  N  *  F  D  A  D  L  V  D  F  A  G  S  C  L  H  T  A  R  E  *  N  L  V  L  F  Y  D  K  G  G  M  T  G  Y  *  L  L  K  I  F  V  T  W  Q  R  F  T  Y  V  Y  I  C  *  N  H  *  G  V  T  H  R  S  T  Q  *  Q  I  *  L  I  K  R  Q  C  K  H  M  L  L  F  N  T  A  F  Y  M  L  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39187" stop="39110"/>
                    <exon start="39021" stop="38949"/>
                    <exon start="38871" stop="38786"/>
                    <exon start="37582" stop="37463"/>
                    <exon start="37154" stop="37074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDVPKLLEYLKRHSSEFTSMRGYSKQVVHPILDQSFFFDAFHKMRLKEEFDVQPWTFEQHLGEAIIIPAGCPYQVKQLKSCINVVLHFISPENVAECINVTDEIRLLPEHHKARGKVLEVKKMVICGMKNAIAEIRNLTHSKQSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="42349" PGL_stop="39488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42349" e_stop="42108"/>
            <exon e_start="40358" e_stop="40029"/>
            <exon e_start="39634" e_stop="39488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42349" e_stop="42108" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42107" i_stop="40359" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40358" e_stop="40029" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.743" acc_prob="0.970">
            <gDNA_intron_boundary i_start="40028" i_stop="39635" i_length="394"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="39634" e_stop="39488" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42349" stop="42108"/>
              <exon start="40358" stop="40029"/>
              <exon start="39634" stop="39488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTCGAGGGATAAGTTTCTGTATAGTCCATCTATAAATAATCTTCGTGAGGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGGTCATCCTATTATAGTACGGAATGTGCTTCGGAATTCTTCTAATTTGTCTTGGGATCCAGTTGTTATGTTCTGCACTTACCTTGAGAAAAGGTCAAAATGTTCCTTGGATAAAGAAACAGCTAAGGCACAAAATCACTCGGACTGGTGTGAG : GTGGAAATAGCTAGAAAACAGATATTTATGGGGTCACTTGAATGGCAAACACATGCAACAATGCAGCGTGAAATAGTAAAATTCAAAGCATGGCTTTCTTCCCATCTATTCCAAGAGCAATTTCCTGGTCACCATGCTGAGATCTTGCAGGCTATACCACTACAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAATTGCCACCGGAAATGCCACAAACTGATTTAGGACCTTCAATCTATATTTCCTATGGTGGGCCTGAAGAACTATCACAAGCAGAATTTATCTCTAACCTATGTTGTGAATCATATGATATG : GTTAATATTCTTGCAAGTGCTACTGATGTTCTTGCTTCCAAGGAACAAGTAAGAAAAATAAAATGTTTAATGAAAAATAAGAAGCCTCAAGATCACAAGGAAATTACCAGCCATTCCAGTGACCAGAAAGGAAAATCATCTCTGCAT</gDNA_template>
            <first_frame> E  I  R  G  I  S  F  C  I  V  H  L  *  I  I  F  V  R  K  T  L  N  T  F  R  N  T  G  V  K  V  I  L  L  *  Y  G  M  C  F  G  I  L  L  I  C  L  G  I  Q  L  L  C  S  A  L  T  L  R  K  G  Q  N  V  P  W  I  K  K  Q  L  R  H  K  I  T  R  T  G  V  R :   W  K  *  L  E  N  R  Y  L  W  G  H  L  N  G  K  H  M  Q  Q  C  S  V  K  *  *  N  S  K  H  G  F  L  P  I  Y  S  K  S  N  F  L  V  T  M  L  R  S  C  R  L  Y  H  Y  K  S  I  *  I  Q  N  L  V  F  *  I  *  Q  L  N  C  H  R  K  C  H  K  L  I  *  D  L  Q  S  I  F  P  M  V  G  L  K  N  Y  H  K  Q  N  L  S  L  T  Y  V  V  N  H  M  I  W :   L  I  F  L  Q  V  L  L  M  F  L  L  P  R  N  K  *  E  K  *  N  V  *  *  K  I  R  S  L  K  I  T  R  K  L  P  A  I  P  V  T  R  K  E  N  H  L  C   </first_frame>
            <second_frame>  K  F  E  G  *  V  S  V  *  S  I  Y  K  *  S  S  *  G  K  P  *  T  L  S  E  T  L  G  *  R  S  S  Y  Y  S  T  E  C  A  S  E  F  F  *  F  V  L  G  S  S  C  Y  V  L  H  L  P  *  E  K  V  K  M  F  L  G  *  R  N  S  *  G  T  K  S  L  G  L  V  *   : G  G  N  S  *  K  T  D  I  Y  G  V  T  *  M  A  N  T  C  N  N  A  A  *  N  S  K  I  Q  S  M  A  F  F  P  S  I  P  R  A  I  S  W  S  P  C  *  D  L  A  G  Y  T  T  T  R  V  Y  E  S  K  I  W  S  S  K  S  S  S  *  I  A  T  G  N  A  T  N  *  F  R  T  F  N  L  Y  F  L  W  W  A  *  R  T  I  T  S  R  I  Y  L  *  P  M  L  *  I  I  *  Y   : G  *  Y  S  C  K  C  Y  *  C  S  C  F  Q  G  T  S  K  K  N  K  M  F  N  E  K  *  E  A  S  R  S  Q  G  N  Y  Q  P  F  Q  *  P  E  R  K  I  I  S  A  </second_frame>
            <third_frame>   N  S  R  D  K  F  L  Y  S  P  S  I  N  N  L  R  E  E  N  L  E  H  F  Q  K  H  W  G  E  G  H  P  I  I  V  R  N  V  L  R  N  S  S  N  L  S  W  D  P  V  V  M  F  C  T  Y  L  E  K  R  S  K  C  S  L  D  K  E  T  A  K  A  Q  N  H  S  D  W  C  E  :  V  E  I  A  R  K  Q  I  F  M  G  S  L  E  W  Q  T  H  A  T  M  Q  R  E  I  V  K  F  K  A  W  L  S  S  H  L  F  Q  E  Q  F  P  G  H  H  A  E  I  L  Q  A  I  P  L  Q  E  Y  M  N  P  K  S  G  L  L  N  L  A  V  K  L  P  P  E  M  P  Q  T  D  L  G  P  S  I  Y  I  S  Y  G  G  P  E  E  L  S  Q  A  E  F  I  S  N  L  C  C  E  S  Y  D  M  :  V  N  I  L  A  S  A  T  D  V  L  A  S  K  E  Q  V  R  K  I  K  C  L  M  K  N  K  K  P  Q  D  H  K  E  I  T  S  H  S  S  D  Q  K  G  K  S  S  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42347" stop="42108"/>
                    <exon start="40358" stop="40029"/>
                    <exon start="39634" stop="39488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRDKFLYSPSINNLREENLEHFQKHWGEGHPIIVRNVLRNSSNLSWDPVVMFCTYLEKRSKCSLDKETAKAQNHSDWCEVEIARKQIFMGSLEWQTHATMQREIVKFKAWLSSHLFQEQFPGHHAEILQAIPLQEYMNPKSGLLNLAVKLPPEMPQTDLGPSIYISYGGPEELSQAEFISNLCCESYDMVNILASATDVLASKEQVRKIKCLMKNKKPQDHKEITSHSSDQKGKSSLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61302" PGL_stop="56043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61302" e_stop="61260"/>
            <exon e_start="61179" e_stop="61074"/>
            <exon e_start="60984" e_stop="60809"/>
            <exon e_start="60722" e_stop="60562"/>
            <exon e_start="60315" e_stop="60057"/>
            <exon e_start="59958" e_stop="59608"/>
            <exon e_start="58455" e_stop="58445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.962" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.510" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.692" acc_prob="0.895" e_score="0.994"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61302" e_stop="61260" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.962" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61259" i_stop="61180" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61179" e_stop="61074" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.510">
            <gDNA_intron_boundary i_start="61073" i_stop="60985" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60984" e_stop="60809" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60808" i_stop="60723" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60722" e_stop="60562" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60561" i_stop="60316" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60315" e_stop="60057" e_length="259"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60056" i_stop="59959" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="59958" e_stop="59608" e_length="351"/>
          </exon>
          <intron i_serial="6" don_prob="0.692" acc_prob="0.895">
            <gDNA_intron_boundary i_start="59607" i_stop="58456" i_length="1152"/>
          </intron>
          <exon e_serial="7" e_score="0.727">
            <gDNA_exon_boundary e_start="58455" e_stop="58445" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60562"/>
              <exon start="60315" stop="60111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60562"/>
              <exon start="60315" stop="60226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60562"/>
              <exon start="60315" stop="60269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60809"/>
              <exon start="60722" stop="60693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61302" stop="61260"/>
              <exon start="61179" stop="61074"/>
              <exon start="60984" stop="60864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60812" stop="60809"/>
              <exon start="60722" stop="60562"/>
              <exon start="60315" stop="60057"/>
              <exon start="59958" stop="59608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59870" stop="59608"/>
              <exon start="58455" stop="58445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGTTGGAGATATAGCTTTCATGTGCCCCGAGTTTATGCAA : TCGTTTTTTGGTGGTGTTGCTGCATCTGGTGCACTTACCTCTGGTTTAAGGCTAATAACCAAAGCAGCTTTTGAAAACAGTAACAATGGCCTTCGCAAAGGAGTTA : TGTTGTTCCTTGCTATCTCCGCATTCTTTGAATTCCTATGCATCCTTCTATATTCATTCGTATTCCCTAAGCTACCAATTGTGAAGCACTACCGTTCAAAGGCAGCTGCAGAAGGATCAACAACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA : GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGAATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCCGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG : GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAATGGTTACCTCACTGTTTGTGTCATGACAGCTGCACCTAAAGGATACAAG : GGTCCTGAGGCAAATGCATTGGGTAACTTGCTAGTGTTATTCCTACTAGCTGGTATATTTTCCGGTGTTGCTTTGGATTGGTTGTGGATTATTGGTAACGGAAAATTCTGAGTACTCAAGATTGTATGCGACAGGACATTTGATAACATGTCATTTTAGTTGGGGAACACATAATAGTTCTGGTTCCAAATATGCATTTTGTGTGAATGTTTTGCTTTCTTTTTTCTTTTTTTTCATGTCAACTTTCAACTTCTAGGAGTATGAATTGTGAAATCTACGTATGTGATTATTTAACTTATTTCTGGATTGCAAAGAATGTAAAGTTCAATTCACATAGAAAGACAAAAAAGG : TACAAAAATAA</gDNA_template>
            <first_frame> N  G  W  R  Y  S  F  H  V  P  R  V  Y  A   : I  V  F  W  W  C  C  C  I  W  C  T  Y  L  W  F  K  A  N  N  Q  S  S  F  *  K  Q  *  Q  W  P  S  Q  R  S  Y :   V  V  P  C  Y  L  R  I  L  *  I  P  M  H  P  S  I  F  I  R  I  P  *  A  T  N  C  E  A  L  P  F  K  G  S  C  R  R  I  N  N  C  C  S  *  L  G  C  C  R  H  W  N  S  T  N  G  K   : S  *  Q  R  C  *  A  I  R  T  S  D  H  Q  T  I  A  S  P  E  H  *  L  *  I  E  L  V  L  D  L  C  P  H  F  I  Y  F  P  R  I  L  V  *  K  H  W  Y  S  P  I  G  I  M  :  V  P  S  S  S  D  S  N  V  Q  C  L  G  S  D  R  K  I  R  S  T  D  *  E  N  R  A  S  I  T  Q  G  P  H  H  C  N  P  L  S  F  L  V  Y  P  L  L  L  F  H  C  K  I  W  *  S  R  L  D  D  I  S  R  I  L  L  G  T  H  K  W  L  P  H  C  L  C  H  D  S  C  T  *  R  I  Q   : G  S  *  G  K  C  I  G  *  L  A  S  V  I  P  T  S  W  Y  I  F  R  C  C  F  G  L  V  V  D  Y  W  *  R  K  I  L  S  T  Q  D  C  M  R  Q  D  I  *  *  H  V  I  L  V  G  E  H  I  I  V  L  V  P  N  M  H  F  V  *  M  F  C  F  L  F  S  F  F  S  C  Q  L  S  T  S  R  S  M  N  C  E  I  Y  V  C  D  Y  L  T  Y  F  W  I  A  K  N  V  K  F  N  S  H  R  K  T  K  K   : V  Q  K  * </first_frame>
            <second_frame>  M  V  G  D  I  A  F  M  C  P  E  F  M  Q  :  S  F  F  G  G  V  A  A  S  G  A  L  T  S  G  L  R  L  I  T  K  A  A  F  E  N  S  N  N  G  L  R  K  G  V   : M  L  F  L  A  I  S  A  F  F  E  F  L  C  I  L  L  Y  S  F  V  F  P  K  L  P  I  V  K  H  Y  R  S  K  A  A  A  E  G  S  T  T  V  A  A  D  L  A  A  A  G  I  G  I  Q  P  M  E  K  :  A  N  N  D  A  K  Q  S  E  R  L  T  T  K  Q  L  L  L  Q  N  I  D  Y  E  L  N  L  Y  L  I  Y  V  L  T  L  S  I  F  P  G  F  L  Y  E  N  T  G  T  H  Q  L  G  S  W :   Y  P  L  V  L  I  A  M  Y  N  V  W  D  L  I  G  R  Y  V  P  L  I  K  K  I  E  L  Q  S  R  K  G  L  I  I  A  T  L  S  R  F  S  F  I  P  C  F  Y  F  T  A  K  Y  G  D  Q  G  W  M  I  F  L  V  S  F  L  G  L  T  N  G  Y  L  T  V  C  V  M  T  A  A  P  K  G  Y  K  :  G  P  E  A  N  A  L  G  N  L  L  V  L  F  L  L  A  G  I  F  S  G  V  A  L  D  W  L  W  I  I  G  N  G  K  F  *  V  L  K  I  V  C  D  R  T  F  D  N  M  S  F  *  L  G  N  T  *  *  F  W  F  Q  I  C  I  L  C  E  C  F  A  F  F  F  L  F  F  H  V  N  F  Q  L  L  G  V  *  I  V  K  S  T  Y  V  I  I  *  L  I  S  G  L  Q  R  M  *  S  S  I  H  I  E  R  Q  K  R  :  Y  K  N   </second_frame>
            <third_frame>   W  L  E  I  *  L  S  C  A  P  S  L  C  N :   R  F  L  V  V  L  L  H  L  V  H  L  P  L  V  *  G  *  *  P  K  Q  L  L  K  T  V  T  M  A  F  A  K  E  L  :  C  C  S  L  L  S  P  H  S  L  N  S  Y  A  S  F  Y  I  H  S  Y  S  L  S  Y  Q  L  *  S  T  T  V  Q  R  Q  L  Q  K  D  Q  Q  L  L  Q  L  T  W  L  L  Q  A  L  E  F  N  Q  W  K  K :   L  T  T  M  L  S  N  Q  N  V  *  P  P  N  N  C  F  S  R  T  L  I  M  N  *  T  C  T  *  F  M  S  S  L  Y  L  F  S  P  D  S  C  M  K  T  L  V  L  T  N  W  D  H   : G  T  L  *  F  *  *  Q  C  T  M  F  G  I  *  *  E  D  T  F  H  *  L  R  K  S  S  F  N  H  A  R  A  S  S  L  Q  P  S  L  V  S  R  L  S  L  A  S  I  S  L  Q  N  M  V  I  K  A  G  *  Y  F  S  Y  P  S  W  D  S  Q  M  V  T  S  L  F  V  S  *  Q  L  H  L  K  D  T  R :   V  L  R  Q  M  H  W  V  T  C  *  C  Y  S  Y  *  L  V  Y  F  P  V  L  L  W  I  G  C  G  L  L  V  T  E  N  S  E  Y  S  R  L  Y  A  T  G  H  L  I  T  C  H  F  S  W  G  T  H  N  S  S  G  S  K  Y  A  F  C  V  N  V  L  L  S  F  F  F  F  F  M  S  T  F  N  F  *  E  Y  E  L  *  N  L  R  M  *  L  F  N  L  F  L  D  C  K  E  C  K  V  Q  F  T  *  K  D  K  K  G :   T  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61301" stop="61260"/>
                    <exon start="61179" stop="61074"/>
                    <exon start="60984" stop="60809"/>
                    <exon start="60722" stop="60562"/>
                    <exon start="60315" stop="60057"/>
                    <exon start="59958" stop="59848"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGDIAFMCPEFMQSFFGGVAASGALTSGLRLITKAAFENSNNGLRKGVMLFLAISAFFEFLCILLYSFVFPKLPIVKHYRSKAAAEGSTTVAADLAAAGIGIQPMEKANNDAKQSERLTTKQLLLQNIDYELNLYLIYVLTLSIFPGFLYENTGTHQLGSWYPLVLIAMYNVWDLIGRYVPLIKKIELQSRKGLIIATLSRFSFIPCFYFTAKYGDQGWMIFLVSFLGLTNGYLTVCVMTAAPKGYKGPEANALGNLLVLFLLAGIFSGVALDWLWIIGNGKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58554" e_stop="58369"/>
            <exon e_start="57147" e_stop="57058"/>
            <exon e_start="56920" e_stop="56336"/>
            <exon e_start="56143" e_stop="56043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.640" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58554" e_stop="58369" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="58368" i_stop="57148" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57147" e_stop="57058" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.897">
            <gDNA_intron_boundary i_start="57057" i_stop="56921" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56920" e_stop="56336" e_length="585"/>
          </exon>
          <intron i_serial="3" don_prob="0.640" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56335" i_stop="56144" i_length="192"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="56143" e_stop="56043" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58554" stop="58369"/>
              <exon start="57147" stop="57058"/>
              <exon start="56920" stop="56344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58406" stop="58369"/>
              <exon start="57147" stop="57058"/>
              <exon start="56920" stop="56394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58406" stop="58369"/>
              <exon start="57147" stop="57058"/>
              <exon start="56920" stop="56432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57123" stop="57058"/>
              <exon start="56920" stop="56336"/>
              <exon start="56143" stop="56043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTCAGAAGACGTAAATATGAACCCAAAAATGCTCAAGGGACTATTAAATCTACCCCAAACATAAGGACATTTTTACCATTTTGTCCAAAATTTAGTACAAAAATAACTTGGCGCGCAGAGTGCAAACCCTAGTCCGAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG : GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG : TCCCTTCACGCCCTTAGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACGGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAGGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGGTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGACGCCACAGATTTTTCTGACTTTGAGAAAGCTCACCATAAGATGATCGATGTGTCCTGGGGGATCGGAGGTATCTTCATTCCTGTTGTGCTGTTCATGTCATTTTGTAACTATTACTATG : GACAGGATGCCTCGTCTCCTGACAAGCTGTCTTTTGCTGTATGAGATGTTCAAGACGAGATATAAATACTTTTGTGGTGGCAGTGATCTTTGGTTTTGGCT</gDNA_template>
            <first_frame> I  F  Q  K  T  *  I  *  T  Q  K  C  S  R  D  Y  *  I  Y  P  K  H  K  D  I  F  T  I  L  S  K  I  *  Y  K  N  N  L  A  R  R  V  Q  T  L  V  R  A  R  L  S  L  T  A  V  L  E  C  L  A  E  L  :  D  I  E  K  L  M  I  L  E  V  F  N  I  L  V  S  S  W  L  E  Q  N  I  *  L  L  I  V  L  K  :  S  L  H  A  L  S  V  Q  V  L  *  S  C  *  M  W  N  G  E  G  M  H  *  I  K  *  T  G  T  W  N  D  K  H  L  R  L  Y  L  N  *  S  S  I  P  S  F  F  S  H  G  Q  E  E  L  V  S  T  *  P  P  V  Y  L  L  L  W  P  L  P  C  L  F  Y  *  C  V  Y  F  W  L  I  R  S  Y  T  L  A  W  Q  N  Q  E  L  Q  K  *  T  C  S  S  *  I  *  C  E  V  I  N  I  *  E  K  K  Q  E  I  *  W  N  L  T  E  A  R  K  E  G  *  L  M  L  W  I  T  V  K  V  L  S  W  T  W  T  L  L  L  P  E  L  R  L  F  V  M  T  P  Q  I  F  L  T  L  R  K  L  T  I  R  *  S  M  C  P  G  G  S  E  V  S  S  F  L  L  C  C  S  C  H  F  V  T  I  T  M  :  D  R  M  P  R  L  L  T  S  C  L  L  L  Y  E  M  F  K  T  R  Y  K  Y  F  C  G  G  S  D  L  W  F  W   </first_frame>
            <second_frame>  F  F  R  R  R  K  Y  E  P  K  N  A  Q  G  T  I  K  S  T  P  N  I  R  T  F  L  P  F  C  P  K  F  S  T  K  I  T  W  R  A  E  C  K  P  *  S  E  L  V  S  P  L  P  R  C  S  S  V  S  P  S  W :   T  *  R  N  *  *  Y  W  K  S  S  T  Y  W  F  P  H  G  W  N  R  T  Y  N  Y  *  L  Y  *  S :   P  F  T  P  L  A  F  K  C  C  E  V  V  R  C  G  T  E  K  E  C  I  K  S  N  E  L  G  L  G  T  T  S  T  *  G  C  I  *  T  R  A  A  Y  P  L  S  F  R  M  D  R  R  N  *  Y  L  P  N  H  Q  Y  T  F  C  Y  G  L  C  H  V  Y  S  I  D  V  F  I  F  G  *  F  V  H  T  H  W  H  G  K  I  K  N  Y  K  N  E  R  A  H  H  E  F  D  A  K  L  *  I  F  K  R  R  N  K  K  S  N  G  I  *  P  K  Q  E  R  K  A  S  *  C  C  G  *  Q  *  R  S  C  H  G  H  G  L  F  Y  C  Q  N  *  D  Y  L  *  *  R  H  R  F  F  *  L  *  E  S  S  P  *  D  D  R  C  V  L  G  D  R  R  Y  L  H  S  C  C  A  V  H  V  I  L  *  L  L  L  W :   T  G  C  L  V  S  *  Q  A  V  F  C  C  M  R  C  S  R  R  D  I  N  T  F  V  V  A  V  I  F  G  F  G  </second_frame>
            <third_frame>   F  S  E  D  V  N  M  N  P  K  M  L  K  G  L  L  N  L  P  Q  T  *  G  H  F  Y  H  F  V  Q  N  L  V  Q  K  *  L  G  A  Q  S  A  N  P  S  P  S  S  S  L  P  Y  R  G  A  R  V  S  R  R  V   : G  H  R  E  I  D  D  I  G  S  L  Q  H  I  G  F  L  M  A  G  T  E  H  I  T  I  D  C  I  E   : V  P  S  R  P  *  R  S  S  V  V  K  L  L  D  V  E  R  R  R  N  A  L  N  Q  M  N  W  D  L  E  R  Q  A  L  E  V  V  S  K  L  E  Q  H  T  L  F  L  F  A  W  T  G  G  I  S  I  Y  L  T  T  S  I  P  S  A  M  A  F  A  M  S  I  L  L  M  C  L  F  L  A  D  S  F  I  H  I  G  M  A  K  S  R  I  T  K  M  N  V  L  I  M  N  L  M  R  S  Y  K  Y  L  R  E  E  T  R  N  L  M  E  F  D  R  S  K  K  G  R  L  A  N  V  V  D  N  S  E  G  P  V  M  D  M  D  S  F  I  A  R  T  K  T  I  C  D  D  A  T  D  F  S  D  F  E  K  A  H  H  K  M  I  D  V  S  W  G  I  G  G  I  F  I  P  V  V  L  F  M  S  F  C  N  Y  Y  Y   : G  Q  D  A  S  S  P  D  K  L  S  F  A  V  *  D  V  Q  D  E  I  *  I  L  L  W  W  Q  *  S  L  V  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56903" stop="56336"/>
                    <exon start="56143" stop="56100"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSVVKLLDVERRRNALNQMNWDLERQALEVVSKLEQHTLFLFAWTGGISIYLTTSIPSAMAFAMSILLMCLFLADSFIHIGMAKSRITKMNVLIMNLMRSYKYLREETRNLMEFDRSKKGRLANVVDNSEGPVMDMDSFIARTKTICDDATDFSDFEKAHHKMIDVSWGIGGIFIPVVLFMSFCNYYYGQDASSPDKLSFAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="71677" PGL_stop="69569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71677" e_stop="71631"/>
            <exon e_start="70354" e_stop="70265"/>
            <exon e_start="70125" e_stop="69569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71677" e_stop="71631" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="71630" i_stop="70355" i_length="1276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70354" e_stop="70265" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.944">
            <gDNA_intron_boundary i_start="70264" i_stop="70126" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="70125" e_stop="69569" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71677" stop="71631"/>
              <exon start="70354" stop="70265"/>
              <exon start="70125" stop="69569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71658" stop="71631"/>
              <exon start="70354" stop="70265"/>
              <exon start="70125" stop="69889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70354" stop="70265"/>
              <exon start="70125" stop="69608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70354" stop="70265"/>
              <exon start="70125" stop="69658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTCGTCTCTCCCTTACCGCGGTGCTCGAGTGTCTCGCCGAGTTG : GACATAGAGAAATTGATGATATTGGAAGTCTTCAACATATTGGTTTCCTCATGGCTGGAACAGAACATATAACTATTGATTGTATTGAAG : TCCCTTCACGCCCTTTGCGTTCAAGTGTTGTGAAGTTGTTAGATGTGGAACAGAGAAGGAATGCATTAAATCAAATGAACTGGGACTTGGAACGACAAGCACTTGAGGTTGTATCTAAACTAGAGCAGCATACCCTCTTTCTTTTCGCATGGACAGGAGGAATTAGTATCTACCTAACCACCAGTATACCTTCTGCTATGGCCTTTGCCATGTCTATTCTATTGATGTGTTTATTTTTGGCTGATTCGTTCATACACATTGGCATGGCAAAATCAAGAATTACAAAAATGAACGTGCTCATCATGAATTTGATGCGAAGTTATAAATATTTAAGAGAAGAAACAAGAAATCTAATGGAATTTGACCGAAGCAAGAAAAGAAGGCTAGCTAATGTTGTGGATAACAGTGAAGTTCCTGTCATGGACATGGACTCTTTTATTGCCAGAACTAAGACTATTTGTGATGATGCCACAGATTTTTCTGACTTTGAGAAAGCTCGCCATAAGATGATCGATGTGTCCTGGGGGTTCGGAGGTATCTTCATTCCTGTTGTGCTG</gDNA_template>
            <first_frame> E  L  V  S  P  L  P  R  C  S  S  V  S  P  S  W :   T  *  R  N  *  *  Y  W  K  S  S  T  Y  W  F  P  H  G  W  N  R  T  Y  N  Y  *  L  Y  *  S :   P  F  T  P  F  A  F  K  C  C  E  V  V  R  C  G  T  E  K  E  C  I  K  S  N  E  L  G  L  G  T  T  S  T  *  G  C  I  *  T  R  A  A  Y  P  L  S  F  R  M  D  R  R  N  *  Y  L  P  N  H  Q  Y  T  F  C  Y  G  L  C  H  V  Y  S  I  D  V  F  I  F  G  *  F  V  H  T  H  W  H  G  K  I  K  N  Y  K  N  E  R  A  H  H  E  F  D  A  K  L  *  I  F  K  R  R  N  K  K  S  N  G  I  *  P  K  Q  E  K  K  A  S  *  C  C  G  *  Q  *  S  S  C  H  G  H  G  L  F  Y  C  Q  N  *  D  Y  L  *  *  C  H  R  F  F  *  L  *  E  S  S  P  *  D  D  R  C  V  L  G  V  R  R  Y  L  H  S  C  C  A  </first_frame>
            <second_frame>  S  S  S  L  P  Y  R  G  A  R  V  S  R  R  V   : G  H  R  E  I  D  D  I  G  S  L  Q  H  I  G  F  L  M  A  G  T  E  H  I  T  I  D  C  I  E   : V  P  S  R  P  L  R  S  S  V  V  K  L  L  D  V  E  Q  R  R  N  A  L  N  Q  M  N  W  D  L  E  R  Q  A  L  E  V  V  S  K  L  E  Q  H  T  L  F  L  F  A  W  T  G  G  I  S  I  Y  L  T  T  S  I  P  S  A  M  A  F  A  M  S  I  L  L  M  C  L  F  L  A  D  S  F  I  H  I  G  M  A  K  S  R  I  T  K  M  N  V  L  I  M  N  L  M  R  S  Y  K  Y  L  R  E  E  T  R  N  L  M  E  F  D  R  S  K  K  R  R  L  A  N  V  V  D  N  S  E  V  P  V  M  D  M  D  S  F  I  A  R  T  K  T  I  C  D  D  A  T  D  F  S  D  F  E  K  A  R  H  K  M  I  D  V  S  W  G  F  G  G  I  F  I  P  V  V  L </second_frame>
            <third_frame>   A  R  L  S  L  T  A  V  L  E  C  L  A  E  L  :  D  I  E  K  L  M  I  L  E  V  F  N  I  L  V  S  S  W  L  E  Q  N  I  *  L  L  I  V  L  K  :  S  L  H  A  L  C  V  Q  V  L  *  S  C  *  M  W  N  R  E  G  M  H  *  I  K  *  T  G  T  W  N  D  K  H  L  R  L  Y  L  N  *  S  S  I  P  S  F  F  S  H  G  Q  E  E  L  V  S  T  *  P  P  V  Y  L  L  L  W  P  L  P  C  L  F  Y  *  C  V  Y  F  W  L  I  R  S  Y  T  L  A  W  Q  N  Q  E  L  Q  K  *  T  C  S  S  *  I  *  C  E  V  I  N  I  *  E  K  K  Q  E  I  *  W  N  L  T  E  A  R  K  E  G  *  L  M  L  W  I  T  V  K  F  L  S  W  T  W  T  L  L  L  P  E  L  R  L  F  V  M  M  P  Q  I  F  L  T  L  R  K  L  A  I  R  *  S  M  C  P  G  G  S  E  V  S  S  F  L  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71676" stop="71631"/>
                    <exon start="70354" stop="70265"/>
                    <exon start="70125" stop="69569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSLPYRGARVSRRVGHREIDDIGSLQHIGFLMAGTEHITIDCIEVPSRPLRSSVVKLLDVEQRRNALNQMNWDLERQALEVVSKLEQHTLFLFAWTGGISIYLTTSIPSAMAFAMSILLMCLFLADSFIHIGMAKSRITKMNVLIMNLMRSYKYLREETRNLMEFDRSKKRRLANVVDNSEVPVMDMDSFIARTKTICDDATDFSDFEKARHKMIDVSWGFGGIFIPVVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="74131" PGL_stop="73375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74131" e_stop="74078"/>
            <exon e_start="73991" e_stop="73831"/>
            <exon e_start="73584" e_stop="73375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74131" e_stop="74078" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74077" i_stop="73992" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73991" e_stop="73831" e_length="161"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73830" i_stop="73585" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73584" e_stop="73375" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74131" stop="74078"/>
              <exon start="73991" stop="73831"/>
              <exon start="73584" stop="73375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTTGCAGCTGACTTGGCTGCTGCAGGCATTGGAATTCAACCAATGGAAAAA : GCTAACAACGATGCTAAGCAATCAGAACGTCTGACCACCAAACAATTGCTTCTCCAGAACATTGATTATGTATTGAACTTGTACTTGATTTATGTCCTCACTTTATCTATTTTCCCTGGATTCTTGTATGAAAACACTGGTACTCACCAATTGGGATCATG : GTACCCTCTAGTTCTGATAGCAATGTACAATGTTTGGGATCTGATAGGAAGATACGTTCCACTGATTAAGAAAATCGAGCTTCAATCACGCAAGGGCCTCATCATTGCAACCCTCTCTCGTTTCTCGTTTATCCCTTGCTTCTATTTCACTGCAAAATATGGTGATCAAGGCTGGATGATATTTCTCGTATCCTTCTTGGGACTCACAAA</gDNA_template>
            <first_frame> T  V  A  A  D  L  A  A  A  G  I  G  I  Q  P  M  E  K  :  A  N  N  D  A  K  Q  S  E  R  L  T  T  K  Q  L  L  L  Q  N  I  D  Y  V  L  N  L  Y  L  I  Y  V  L  T  L  S  I  F  P  G  F  L  Y  E  N  T  G  T  H  Q  L  G  S  W :   Y  P  L  V  L  I  A  M  Y  N  V  W  D  L  I  G  R  Y  V  P  L  I  K  K  I  E  L  Q  S  R  K  G  L  I  I  A  T  L  S  R  F  S  F  I  P  C  F  Y  F  T  A  K  Y  G  D  Q  G  W  M  I  F  L  V  S  F  L  G  L  T   </first_frame>
            <second_frame>  L  L  Q  L  T  W  L  L  Q  A  L  E  F  N  Q  W  K  K :   L  T  T  M  L  S  N  Q  N  V  *  P  P  N  N  C  F  S  R  T  L  I  M  Y  *  T  C  T  *  F  M  S  S  L  Y  L  F  S  L  D  S  C  M  K  T  L  V  L  T  N  W  D  H   : G  T  L  *  F  *  *  Q  C  T  M  F  G  I  *  *  E  D  T  F  H  *  L  R  K  S  S  F  N  H  A  R  A  S  S  L  Q  P  S  L  V  S  R  L  S  L  A  S  I  S  L  Q  N  M  V  I  K  A  G  *  Y  F  S  Y  P  S  W  D  S  Q  </second_frame>
            <third_frame>   C  C  S  *  L  G  C  C  R  H  W  N  S  T  N  G  K   : S  *  Q  R  C  *  A  I  R  T  S  D  H  Q  T  I  A  S  P  E  H  *  L  C  I  E  L  V  L  D  L  C  P  H  F  I  Y  F  P  W  I  L  V  *  K  H  W  Y  S  P  I  G  I  M  :  V  P  S  S  S  D  S  N  V  Q  C  L  G  S  D  R  K  I  R  S  T  D  *  E  N  R  A  S  I  T  Q  G  P  H  H  C  N  P  L  S  F  L  V  Y  P  L  L  L  F  H  C  K  I  W  *  S  R  L  D  D  I  S  R  I  L  L  G  T  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74131" stop="74078"/>
                    <exon start="73991" stop="73831"/>
                    <exon start="73584" stop="73377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAADLAAAGIGIQPMEKANNDAKQSERLTTKQLLLQNIDYVLNLYLIYVLTLSIFPGFLYENTGTHQLGSWYPLVLIAMYNVWDLIGRYVPLIKKIELQSRKGLIIATLSRFSFIPCFYFTAKYGDQGWMIFLVSFLGLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83239" PGL_stop="86433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83239" e_stop="83359"/>
            <exon e_start="84980" e_stop="86433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83239" e_stop="83359" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="84980" e_stop="86433" e_length="1454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83239" stop="83359"/>
              <exon start="84980" stop="85737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83242" stop="83359"/>
              <exon start="84980" stop="85524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83242" stop="83359"/>
              <exon start="84980" stop="85501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83242" stop="83359"/>
              <exon start="84980" stop="85496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83245" stop="83359"/>
              <exon start="84980" stop="85601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83245" stop="83359"/>
              <exon start="84980" stop="85425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83246" stop="83359"/>
              <exon start="84980" stop="85365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83246" stop="83359"/>
              <exon start="84980" stop="85337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83254" stop="83359"/>
              <exon start="84980" stop="85448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85165" stop="85703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85580" stop="86410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85723" stop="86433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85723" stop="86433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85723" stop="86432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85724" stop="86305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85753" stop="86271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86035" stop="86390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT : AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGGAGCGTGGGCGATCCGAAGTATCGTCTATTGTTTCTGAAGTTCCGGATTACTTGTTCGGGCTGGACAATTCCGATGACCCGCCCCGCGAATCGAAATTCGTGAAGAACAAGATAATTTCGGAGCCGGGCTCACCCGCTCCACCCATTGTTTCTTCTCCTTATTGCTCTATTTCATCATCATCAATGACACCTACAGCAGCTATGACAGTGATGCCGGATCTTCCACCGGTTAAAACAAAGCTCGATAAACCAAATCCGACAGCTGAATCCAGAGAAACACCGGTTGCGAGTGCGACTGAAACCGGTGAAAGGACGGTTCAACAGCAACAACAGAGTTATCCAAGTAGTCCACTATGGCATTACCCAGCACCACCGGTGCAAACCATACCCGTTTACTATGTCCCTGGTTCGGTTCAGCCAGGAAATATCCCGGTTCAACCCATTACATTAAGGGCTCCATATATTCATCCTTTTCCAGTTCCTCCGAATCAATTACCCGTCGGGTATCCACCCGCTTCAAGTATGGGCCAAGTATATAGTGGATTGAGGCCGGTAATGAGTGTTGACCCGAATGAATTAAGAGTTGTTACTGAAGGAATGAATTACTATGCAGTTAGGAATTCAGGAGTTGTTCCGGGTTACGGAGGTCCAGTTAGCGAAGAAATGCAGGGATCCGGAGGTGATGGAATGTCGGGTCGGGTCTCCCAATGATCAAAAGGTTTGATTGAGAAGCATATTTTGTGTGCTACCGTTTGTGTTAATCATTTTGTTTTAATTTGAAGCAAAGTTTCGTGAATGGTAAATAAATTGTAGTAATTGATAATCTATCCTCCAACTTTAATATGTAAGTATTTGATTAGTAAAAAAGCATTTAAGCAAAGTAACTTCTCAATGTTTTTAAAAGGTTTTG</gDNA_template>
            <first_frame> I  F  L  S  F  F  P  T  N  I  S  S  L  S  S  F  A  V  Q  N  C  I  T  I  N  T  L  L  N  L  E  T  P  K  S  Y  K  S  P  S   : *  R  *  V  G  L  F  T  R  R  Q  S  S  T  P  A  T  A  I  Q  *  P  P  H  L  A  R  S  T  T  T  T  T  C  M  M  T  P  P  L  H  S  H  V  P  V  S  C  A  A  S  V  A  K  L  C  S  G  H  T  T  I  N  F  V  T  S  A  A  I  L  E  L  L  R  *  T  A  T  L  P  S  Q  L  S  L  E  N  S  P  N  S  S  D  I  Q  T  L  T  S  S  T  S  F  L  T  R  N  W  M  L  *  *  P  S  Q  P  M  K  I  W  R  I  *  W  K  S  T  I  G  L  R  R  I  R  N  R  L  G  F  V  S  S  F  S  L  T  I  L  V  P  E  P  A  L  S  A  P  S  S  T  A  H  L  S  E  S  N  G  L  L  T  L  S  M  V  A  P  V  R  V  W  S  V  G  D  P  K  Y  R  L  L  F  L  K  F  R  I  T  C  S  G  W  T  I  P  M  T  R  P  A  N  R  N  S  *  R  T  R  *  F  R  S  R  A  H  P  L  H  P  L  F  L  L  L  I  A  L  F  H  H  H  Q  *  H  L  Q  Q  L  *  Q  *  C  R  I  F  H  R  L  K  Q  S  S  I  N  Q  I  R  Q  L  N  P  E  K  H  R  L  R  V  R  L  K  P  V  K  G  R  F  N  S  N  N  R  V  I  Q  V  V  H  Y  G  I  T  Q  H  H  R  C  K  P  Y  P  F  T  M  S  L  V  R  F  S  Q  E  I  S  R  F  N  P  L  H  *  G  L  H  I  F  I  L  F  Q  F  L  R  I  N  Y  P  S  G  I  H  P  L  Q  V  W  A  K  Y  I  V  D  *  G  R  *  *  V  L  T  R  M  N  *  E  L  L  L  K  E  *  I  T  M  Q  L  G  I  Q  E  L  F  R  V  T  E  V  Q  L  A  K  K  C  R  D  P  E  V  M  E  C  R  V  G  S  P  N  D  Q  K  V  *  L  R  S  I  F  C  V  L  P  F  V  L  I  I  L  F  *  F  E  A  K  F  R  E  W  *  I  N  C  S  N  *  *  S  I  L  Q  L  *  Y  V  S  I  *  L  V  K  K  H  L  S  K  V  T  S  Q  C  F  *  K  V  L </first_frame>
            <second_frame>  Y  F  F  L  S  F  Q  Q  T  F  H  H  F  L  L  L  Q  S  K  I  A  S  Q  L  I  L  F  *  I  L  R  H  Q  R  V  T  S  L  H  H  :  S  D  E  W  V  Y  S  R  A  A  R  V  R  L  R  Q  R  R  F  S  S  L  H  T  S  L  G  A  P  P  P  P  H  V  *  *  H  H  R  Y  T  A  T  C  P  F  H  V  Q  L  R  W  Q  N  C  A  Q  A  T  R  Q  S  T  S  L  R  R  R  R  Y  S  N  C  C  G  E  P  P  H  Y  L  R  S  S  P  W  K  T  L  Q  T  H  R  I  S  K  H  *  H  Q  V  P  A  S  *  R  G  T  G  C  F  D  N  R  H  N  R  *  R  F  G  E  Y  D  G  R  V  R  S  A  Y  A  E  S  E  I  G  S  A  S  S  L  P  F  P  *  R  F  W  F  Q  S  Q  H  Y  Q  L  H  P  R  R  L  I  *  A  R  A  M  V  C  *  R  S  Q  W  W  R  R  S  G  S  G  A  W  A  I  R  S  I  V  Y  C  F  *  S  S  G  L  L  V  R  A  G  Q  F  R  *  P  A  P  R  I  E  I  R  E  E  Q  D  N  F  G  A  G  L  T  R  S  T  H  C  F  F  S  L  L  L  Y  F  I  I  I  N  D  T  Y  S  S  Y  D  S  D  A  G  S  S  T  G  *  N  K  A  R  *  T  K  S  D  S  *  I  Q  R  N  T  G  C  E  C  D  *  N  R  *  K  D  G  S  T  A  T  T  E  L  S  K  *  S  T  M  A  L  P  S  T  T  G  A  N  H  T  R  L  L  C  P  W  F  G  S  A  R  K  Y  P  G  S  T  H  Y  I  K  G  S  I  Y  S  S  F  S  S  S  S  E  S  I  T  R  R  V  S  T  R  F  K  Y  G  P  S  I  *  W  I  E  A  G  N  E  C  *  P  E  *  I  K  S  C  Y  *  R  N  E  L  L  C  S  *  E  F  R  S  C  S  G  L  R  R  S  S  *  R  R  N  A  G  I  R  R  *  W  N  V  G  S  G  L  P  M  I  K  R  F  D  *  E  A  Y  F  V  C  Y  R  L  C  *  S  F  C  F  N  L  K  Q  S  F  V  N  G  K  *  I  V  V  I  D  N  L  S  S  N  F  N  M  *  V  F  D  *  *  K  S  I  *  A  K  *  L  L  N  V  F  K  R  F   </second_frame>
            <third_frame>   I  S  F  F  L  S  N  K  H  F  I  T  F  F  F  C  S  P  K  L  H  H  N  *  Y  S  F  K  S  *  D  T  K  E  L  Q  V  S  I  I :   A  M  S  G  S  I  H  A  P  P  E  F  D  S  G  N  G  D  S  V  A  S  T  P  R  S  E  H  H  H  H  H  M  Y  D  D  T  T  A  T  Q  P  R  A  R  F  M  C  S  F  G  G  K  I  V  L  R  P  H  D  N  Q  L  R  Y  V  G  G  D  T  R  I  V  A  V  N  R  H  T  T  F  A  A  L  L  G  K  L  S  K  L  I  G  Y  P  N  I  N  I  K  Y  Q  L  P  N  E  E  L  D  A  L  I  T  V  T  T  D  E  D  L  E  N  M  M  E  E  Y  D  R  L  T  Q  N  Q  K  S  A  R  L  R  L  F  L  F  P  N  D  S  G  S  R  A  S  T  I  S  S  I  L  D  G  S  S  K  R  E  Q  W  F  V  D  A  L  N  G  G  A  G  P  G  L  E  R  G  R  S  E  V  S  S  I  V  S  E  V  P  D  Y  L  F  G  L  D  N  S  D  D  P  P  R  E  S  K  F  V  K  N  K  I  I  S  E  P  G  S  P  A  P  P  I  V  S  S  P  Y  C  S  I  S  S  S  S  M  T  P  T  A  A  M  T  V  M  P  D  L  P  P  V  K  T  K  L  D  K  P  N  P  T  A  E  S  R  E  T  P  V  A  S  A  T  E  T  G  E  R  T  V  Q  Q  Q  Q  Q  S  Y  P  S  S  P  L  W  H  Y  P  A  P  P  V  Q  T  I  P  V  Y  Y  V  P  G  S  V  Q  P  G  N  I  P  V  Q  P  I  T  L  R  A  P  Y  I  H  P  F  P  V  P  P  N  Q  L  P  V  G  Y  P  P  A  S  S  M  G  Q  V  Y  S  G  L  R  P  V  M  S  V  D  P  N  E  L  R  V  V  T  E  G  M  N  Y  Y  A  V  R  N  S  G  V  V  P  G  Y  G  G  P  V  S  E  E  M  Q  G  S  G  G  D  G  M  S  G  R  V  S  Q  *  S  K  G  L  I  E  K  H  I  L  C  A  T  V  C  V  N  H  F  V  L  I  *  S  K  V  S  *  M  V  N  K  L  *  *  L  I  I  Y  P  P  T  L  I  C  K  Y  L  I  S  K  K  A  F  K  Q  S  N  F  S  M  F  L  K  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83331" stop="83359"/>
                    <exon start="84980" stop="86234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTKELQVSIIAMSGSIHAPPEFDSGNGDSVASTPRSEHHHHHMYDDTTATQPRARFMCSFGGKIVLRPHDNQLRYVGGDTRIVAVNRHTTFAALLGKLSKLIGYPNINIKYQLPNEELDALITVTTDEDLENMMEEYDRLTQNQKSARLRLFLFPNDSGSRASTISSILDGSSKREQWFVDALNGGAGPGLERGRSEVSSIVSEVPDYLFGLDNSDDPPRESKFVKNKIISEPGSPAPPIVSSPYCSISSSSMTPTAAMTVMPDLPPVKTKLDKPNPTAESRETPVASATETGERTVQQQQQSYPSSPLWHYPAPPVQTIPVYYVPGSVQPGNIPVQPITLRAPYIHPFPVPPNQLPVGYPPASSMGQVYSGLRPVMSVDPNELRVVTEGMNYYAVRNSGVVPGYGGPVSEEMQGSGGDGMSGRVSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="85703" PGL_stop="85165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85703" e_stop="85165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="85703" e_stop="85165" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85703" stop="85165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGATGAAATAGAGCAATAAGGAGAAGAAACAATGGGTGGAGCGGGTGAGCCCGGCTCCGAAATTATCTTGTTCTTCACGAATTTCGATTCGCGGGGCGGGTCATCGGAATTGTCCAGCCCGAACAAGTAATCCGGAACTTCAGAAACAATAGACGATACTTCGGATCGCCCACGCTCCAGACCCGGACCGGCGCCACCATTGAGAGCGTCAACAAACCATTGCTCTCGCTTAGATGAGCCGTCGAGGATGGAGCTGATAGTGCTGGCTCTGGAACCAGAATCGTTAGGGAAAAGGAAGAGACGAAGCCGAGCCGATTTCTGATTCTGCGTAAGCCGATCGTACTCTTCCATCATATTCTCCAAATCTTCATCGGTTGTGACGGTTATCAAAGCATCCAGTTCCTCGTTAGGAAGCTGGTACTTGATGTTAATGTTTGGATATCCGATGAGTTTGGAGAGTTTTCCAAGGAGAGCTGCGAAGGTAGTGTGGCGGTTCACCGCAACAATTCGAGTATCGCCGCCGACGTAACGAAGTT</gDNA_template>
            <first_frame> *  *  *  N  R  A  I  R  R  R  N  N  G  W  S  G  *  A  R  L  R  N  Y  L  V  L  H  E  F  R  F  A  G  R  V  I  G  I  V  Q  P  E  Q  V  I  R  N  F  R  N  N  R  R  Y  F  G  S  P  T  L  Q  T  R  T  G  A  T  I  E  S  V  N  K  P  L  L  S  L  R  *  A  V  E  D  G  A  D  S  A  G  S  G  T  R  I  V  R  E  K  E  E  T  K  P  S  R  F  L  I  L  R  K  P  I  V  L  F  H  H  I  L  Q  I  F  I  G  C  D  G  Y  Q  S  I  Q  F  L  V  R  K  L  V  L  D  V  N  V  W  I  S  D  E  F  G  E  F  S  K  E  S  C  E  G  S  V  A  V  H  R  N  N  S  S  I  A  A  D  V  T  K   </first_frame>
            <second_frame>  D  D  E  I  E  Q  *  G  E  E  T  M  G  G  A  G  E  P  G  S  E  I  I  L  F  F  T  N  F  D  S  R  G  G  S  S  E  L  S  S  P  N  K  *  S  G  T  S  E  T  I  D  D  T  S  D  R  P  R  S  R  P  G  P  A  P  P  L  R  A  S  T  N  H  C  S  R  L  D  E  P  S  R  M  E  L  I  V  L  A  L  E  P  E  S  L  G  K  R  K  R  R  S  R  A  D  F  *  F  C  V  S  R  S  Y  S  S  I  I  F  S  K  S  S  S  V  V  T  V  I  K  A  S  S  S  S  L  G  S  W  Y  L  M  L  M  F  G  Y  P  M  S  L  E  S  F  P  R  R  A  A  K  V  V  W  R  F  T  A  T  I  R  V  S  P  P  T  *  R  S  </second_frame>
            <third_frame>   M  M  K  *  S  N  K  E  K  K  Q  W  V  E  R  V  S  P  A  P  K  L  S  C  S  S  R  I  S  I  R  G  A  G  H  R  N  C  P  A  R  T  S  N  P  E  L  Q  K  Q  *  T  I  L  R  I  A  H  A  P  D  P  D  R  R  H  H  *  E  R  Q  Q  T  I  A  L  A  *  M  S  R  R  G  W  S  *  *  C  W  L  W  N  Q  N  R  *  G  K  G  R  D  E  A  E  P  I  S  D  S  A  *  A  D  R  T  L  P  S  Y  S  P  N  L  H  R  L  *  R  L  S  K  H  P  V  P  R  *  E  A  G  T  *  C  *  C  L  D  I  R  *  V  W  R  V  F  Q  G  E  L  R  R  *  C  G  G  S  P  Q  Q  F  E  Y  R  R  R  R  N  E  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85463" stop="85167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVEDGADSAGSGTRIVREKEETKPSRFLILRKPIVLFHHILQIFIGCDGYQSIQFLVRKLVLDVNVWISDEFGEFSKESCEGSVAVHRNNSSIAADVTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92049" PGL_stop="92588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92049" e_stop="92173"/>
            <exon e_start="92332" e_stop="92418"/>
            <exon e_start="92493" e_stop="92588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.944"/>
          <exon-intron don_prob="0.732" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="92049" e_stop="92173" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92174" i_stop="92331" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92332" e_stop="92418" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.732" acc_prob="0.898">
            <gDNA_intron_boundary i_start="92419" i_stop="92492" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="92493" e_stop="92588" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92049" stop="92173"/>
              <exon start="92332" stop="92418"/>
              <exon start="92493" stop="92588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280044" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATTTCGACGCCGTTTCAGCTCTCTTTGCCAACGAGTCCGATCACATGCCGTCGTTTCTCGACTTCAAATCCACCGATGTGCGCTTTTCCCTTCGCCGCCATTCTGTTTTCCTTATTTCTCAA : GTACAAAGTTCTTACAAATTTGATGGCTATATTGCATACCTCGCCGTCAATTACATTGATCGTTTTCTCTCCAAACAAGCAGTTCTG : GAGAATAAGCCATGGATTGTACGGATTCTCGTCATTGTTAGCCTTTCTCTTGCCGCAAAAATGAGGAACGTCGATTTATCACTGTCGGATATTCAG</gDNA_template>
            <first_frame> T  I  S  T  P  F  Q  L  S  L  P  T  S  P  I  T  C  R  R  F  S  T  S  N  P  P  M  C  A  F  P  F  A  A  I  L  F  S  L  F  L  K :   Y  K  V  L  T  N  L  M  A  I  L  H  T  S  P  S  I  T  L  I  V  F  S  P  N  K  Q  F  W :   R  I  S  H  G  L  Y  G  F  S  S  L  L  A  F  L  L  P  Q  K  *  G  T  S  I  Y  H  C  R  I  F   </first_frame>
            <second_frame>  P  F  R  R  R  F  S  S  L  C  Q  R  V  R  S  H  A  V  V  S  R  L  Q  I  H  R  C  A  L  F  P  S  P  P  F  C  F  P  Y  F  S   : S  T  K  F  L  Q  I  *  W  L  Y  C  I  P  R  R  Q  L  H  *  S  F  S  L  Q  T  S  S  S   : G  E  *  A  M  D  C  T  D  S  R  H  C  *  P  F  S  C  R  K  N  E  E  R  R  F  I  T  V  G  Y  S  </second_frame>
            <third_frame>   H  F  D  A  V  S  A  L  F  A  N  E  S  D  H  M  P  S  F  L  D  F  K  S  T  D  V  R  F  S  L  R  R  H  S  V  F  L  I  S  Q  :  V  Q  S  S  Y  K  F  D  G  Y  I  A  Y  L  A  V  N  Y  I  D  R  F  L  S  K  Q  A  V  L  :  E  N  K  P  W  I  V  R  I  L  V  I  V  S  L  S  L  A  A  K  M  R  N  V  D  L  S  L  S  D  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92051" stop="92173"/>
                    <exon start="92332" stop="92418"/>
                    <exon start="92493" stop="92588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFDAVSALFANESDHMPSFLDFKSTDVRFSLRRHSVFLISQVQSSYKFDGYIAYLAVNYIDRFLSKQAVLENKPWIVRILVIVSLSLAAKMRNVDLSLSDIQ</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92049" stop="92173"/>
                    <exon start="92332" stop="92418"/>
                    <exon start="92493" stop="92556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISTPFQLSLPTSPITCRRFSTSNPPMCAFPFAAILFSLFLKYKVLTNLMAILHTSPSITLIVFSPNKQFWRISHGLYGFSSLLAFLLPQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94192" PGL_stop="93458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94192" e_stop="93458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94192" e_stop="93458" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94192" stop="93458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCTTTCAAAGAAGCTAATGACAATATGTCTTTATTCCAAAATTCAAACACCCTGCTAAAATCAGCATAATAACAACGTTTTCTCTCTCTAAGCCCCACTCGGACATTATTATTCATCACTCTTAGCCTCTCTGGAAAGTGGCAAAGCTAAATACAGGAAGCTTCTCTTCTTCCGCCTTTTTTTTCCCTATTGGCACTGACTGCACATAAAACTACAAATTTATGTAAATATTCAGCTTCACAGTACTCCCTTATCTTTGTTCACCCCCTCCAGTTCCAAAGAACAAAGATTCTTTGAATAGTCTATAACATAAAAGTACAAATAGGCGAATTTTCTCTACACAATTATGCTAATAGTGAAACCTATAGAGATTGTGCATCTAATTAGTTGCAATTCTACACTCTGCTTTAGTTTAGAGTTCAATTCATTCAAAGATCCTCCACGTATCTGTTCCCACTCGAACAAAACTGCTATGCATGAGACAACAAAATCAATGAAAACAAAATAGGGACGCTGGTTCACTGTCTTACTATCTTAGCACCACTGAACCTGAGAAATCTGGAACGTTTGATCATCCCTTATATCGCTCAATCTCCGCTTTTTGATATTGTCCTTATCCTGAGTCTCGCATTGAGAGCTTGTATGTTCACACTCCAGAACACTTTTTGGCGTCAACTTACTACAGTACTCCCTCCCTTCTATCGGCATTTCCCGCATTACAGCCAAAGCATTC</gDNA_template>
            <first_frame> L  L  S  K  K  L  M  T  I  C  L  Y  S  K  I  Q  T  P  C  *  N  Q  H  N  N  N  V  F  S  L  *  A  P  L  G  H  Y  Y  S  S  L  L  A  S  L  E  S  G  K  A  K  Y  R  K  L  L  F  F  R  L  F  F  P  Y  W  H  *  L  H  I  K  L  Q  I  Y  V  N  I  Q  L  H  S  T  P  L  S  L  F  T  P  S  S  S  K  E  Q  R  F  F  E  *  S  I  T  *  K  Y  K  *  A  N  F  L  Y  T  I  M  L  I  V  K  P  I  E  I  V  H  L  I  S  C  N  S  T  L  C  F  S  L  E  F  N  S  F  K  D  P  P  R  I  C  S  H  S  N  K  T  A  M  H  E  T  T  K  S  M  K  T  K  *  G  R  W  F  T  V  L  L  S  *  H  H  *  T  *  E  I  W  N  V  *  S  S  L  I  S  L  N  L  R  F  L  I  L  S  L  S  *  V  S  H  *  E  L  V  C  S  H  S  R  T  L  F  G  V  N  L  L  Q  Y  S  L  P  S  I  G  I  S  R  I  T  A  K  A  F </first_frame>
            <second_frame>  C  F  Q  R  S  *  *  Q  Y  V  F  I  P  K  F  K  H  P  A  K  I  S  I  I  T  T  F  S  L  S  K  P  H  S  D  I  I  I  H  H  S  *  P  L  W  K  V  A  K  L  N  T  G  S  F  S  S  S  A  F  F  F  P  I  G  T  D  C  T  *  N  Y  K  F  M  *  I  F  S  F  T  V  L  P  Y  L  C  S  P  P  P  V  P  K  N  K  D  S  L  N  S  L  *  H  K  S  T  N  R  R  I  F  S  T  Q  L  C  *  *  *  N  L  *  R  L  C  I  *  L  V  A  I  L  H  S  A  L  V  *  S  S  I  H  S  K  I  L  H  V  S  V  P  T  R  T  K  L  L  C  M  R  Q  Q  N  Q  *  K  Q  N  R  D  A  G  S  L  S  Y  Y  L  S  T  T  E  P  E  K  S  G  T  F  D  H  P  L  Y  R  S  I  S  A  F  *  Y  C  P  Y  P  E  S  R  I  E  S  L  Y  V  H  T  P  E  H  F  L  A  S  T  Y  Y  S  T  P  S  L  L  S  A  F  P  A  L  Q  P  K  H   </second_frame>
            <third_frame>   A  F  K  E  A  N  D  N  M  S  L  F  Q  N  S  N  T  L  L  K  S  A  *  *  Q  R  F  L  S  L  S  P  T  R  T  L  L  F  I  T  L  S  L  S  G  K  W  Q  S  *  I  Q  E  A  S  L  L  P  P  F  F  S  L  L  A  L  T  A  H  K  T  T  N  L  C  K  Y  S  A  S  Q  Y  S  L  I  F  V  H  P  L  Q  F  Q  R  T  K  I  L  *  I  V  Y  N  I  K  V  Q  I  G  E  F  S  L  H  N  Y  A  N  S  E  T  Y  R  D  C  A  S  N  *  L  Q  F  Y  T  L  L  *  F  R  V  Q  F  I  Q  R  S  S  T  Y  L  F  P  L  E  Q  N  C  Y  A  *  D  N  K  I  N  E  N  K  I  G  T  L  V  H  C  L  T  I  L  A  P  L  N  L  R  N  L  E  R  L  I  I  P  Y  I  A  Q  S  P  L  F  D  I  V  L  I  L  S  L  A  L  R  A  C  M  F  T  L  Q  N  T  F  W  R  Q  L  T  T  V  L  P  P  F  Y  R  H  F  P  H  Y  S  Q  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93710" stop="93459"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNKINENKIGTLVHCLTILAPLNLRNLERLIIPYIAQSPLFDIVLILSLALRACMFTLQNTFWRQLTTVLPPFYRHFPHYSQSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="97779" PGL_stop="96428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97779" e_stop="96428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="97779" e_stop="96428" e_length="1352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97779" stop="97223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97445" stop="96883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96938" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATGTGGGTCAGTGGGCACTGCTAGGTTGGTTTTTGATAAGATGGATTCTAAGACGGCTGTATCATTGAATGCTATGATAGATGGATATGCACGGAATGGATATCACGATGAAGCTCTTATCATCTTTCAGAAAATGTTGGATGAAGGATTCAAACCAACGAATGTGACTATTATGAGCACTTTACATGCGTGTGCTGAAACAAGGAATATTGAGCTTGGACAATATGTTCACAAACTGGTCAACCAACTAGGTCTTGGTTCTAATGTTGCAGTTGTTAACTCGTTGATTTCAATGTATTGCAAGTGCCAAAGAGTGGATATTGCAGCTGAATTGTTTGAAAACTTGAAAGGAAAAACACTTGTTTCATGGAATGCTTTGATTTTGGGCTATGCACAAAATGGATGTGTAATGGATGCATTAACTCATTTTTGTGAAATGCATCTGCAGAACATCACACCTGATTCATTTACAATGGTAAGTGTTGTTACTGCTCTTGCTGAGTTATCAGTATTACGCCAAGCTAAGTGGATACATGGATTTGCTGTAAGAACTTGTTTGAACGGGAATGTTTTTGTAGCCACTGCACTTGTTGACATGTATGCAAAATGTGGAGCAGTTCACACAGCAAGAAAGCTATTTGACATGATGGATGATAGGCATGTTACAACATGGAATGCCATGATAGATGGATATGGCACACATGGCTTTGGAAAGGAAGCTGTTGAATTATTTGAGGAAATGAGAAAGGGGCATGTAGAGCCTAACGACATAACATTTCTCTGTGTCATCTCAGCTTGCAGCCACTCTGGCTTTGTAGACAAGGGGCGCAACTATTTCACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTG</gDNA_template>
            <first_frame> *  M  W  V  S  G  H  C  *  V  G  F  *  *  D  G  F  *  D  G  C  I  I  E  C  Y  D  R  W  I  C  T  E  W  I  S  R  *  S  S  Y  H  L  S  E  N  V  G  *  R  I  Q  T  N  E  C  D  Y  Y  E  H  F  T  C  V  C  *  N  K  E  Y  *  A  W  T  I  C  S  Q  T  G  Q  P  T  R  S  W  F  *  C  C  S  C  *  L  V  D  F  N  V  L  Q  V  P  K  S  G  Y  C  S  *  I  V  *  K  L  E  R  K  N  T  C  F  M  E  C  F  D  F  G  L  C  T  K  W  M  C  N  G  C  I  N  S  F  L  *  N  A  S  A  E  H  H  T  *  F  I  Y  N  G  K  C  C  Y  C  S  C  *  V  I  S  I  T  P  S  *  V  D  T  W  I  C  C  K  N  L  F  E  R  E  C  F  C  S  H  C  T  C  *  H  V  C  K  M  W  S  S  S  H  S  K  K  A  I  *  H  D  G  *  *  A  C  Y  N  M  E  C  H  D  R  W  I  W  H  T  W  L  W  K  G  S  C  *  I  I  *  G  N  E  K  G  A  C  R  A  *  R  H  N  I  S  L  C  H  L  S  L  Q  P  L  W  L  C  R  Q  G  A  Q  L  F  H  D  H  E  G  R  I  Q  L  G  A  F  N  G  P  L  W  G  N  G  *  P  N  W  S  S  W  S  A  E  *  G  L  E  L  H  *  *  Y  A  Y  Q  T  R  T  Q  C  L  W  C  N  V  G  S  L  Q  D  S  Q  K  C  R  F  G  G  E  G  S  R  Q  T  I  *  A  R  S  R  *  W  W  I  S  C  A  S  C  *  Y  V  R  Q  G  F  N  M  A  *  S  C  *  C  Q  N  Y  D  G  E  K  R  Y  S  K  D  T  W  M  E  S  S  *  F  K  K  R  G  P  H  I  L  L  R  K  H  *  P  S  S  V  R  E  D  L  C  L  P  *  E  T  V  *  *  D  *  S  C  W  I  Y  T  *  Y  *  F  N  S  R  C  G  R  C   </first_frame>
            <second_frame>  K  C  G  S  V  G  T  A  R  L  V  F  D  K  M  D  S  K  T  A  V  S  L  N  A  M  I  D  G  Y  A  R  N  G  Y  H  D  E  A  L  I  I  F  Q  K  M  L  D  E  G  F  K  P  T  N  V  T  I  M  S  T  L  H  A  C  A  E  T  R  N  I  E  L  G  Q  Y  V  H  K  L  V  N  Q  L  G  L  G  S  N  V  A  V  V  N  S  L  I  S  M  Y  C  K  C  Q  R  V  D  I  A  A  E  L  F  E  N  L  K  G  K  T  L  V  S  W  N  A  L  I  L  G  Y  A  Q  N  G  C  V  M  D  A  L  T  H  F  C  E  M  H  L  Q  N  I  T  P  D  S  F  T  M  V  S  V  V  T  A  L  A  E  L  S  V  L  R  Q  A  K  W  I  H  G  F  A  V  R  T  C  L  N  G  N  V  F  V  A  T  A  L  V  D  M  Y  A  K  C  G  A  V  H  T  A  R  K  L  F  D  M  M  D  D  R  H  V  T  T  W  N  A  M  I  D  G  Y  G  T  H  G  F  G  K  E  A  V  E  L  F  E  E  M  R  K  G  H  V  E  P  N  D  I  T  F  L  C  V  I  S  A  C  S  H  S  G  F  V  D  K  G  R  N  Y  F  T  I  M  R  E  E  Y  N  L  E  P  S  M  D  H  Y  G  A  M  V  D  L  I  G  R  A  G  R  L  S  E  A  W  N  F  I  D  N  M  P  T  R  P  G  L  N  V  Y  G  A  M  L  G  A  C  K  I  H  K  N  V  D  L  G  E  K  A  A  D  K  L  F  E  L  D  P  D  D  G  G  Y  H  V  L  L  A  N  M  Y  A  R  A  S  I  W  H  K  V  A  N  V  R  T  M  M  E  R  K  G  I  Q  K  T  P  G  W  S  L  V  D  L  R  N  E  V  H  T  F  Y  S  G  S  T  S  H  P  Q  S  E  K  I  Y  A  Y  L  E  K  L  F  D  R  I  K  A  A  G  Y  I  P  D  T  D  S  I  H  D  V  E  D  V  </second_frame>
            <third_frame>   N  V  G  Q  W  A  L  L  G  W  F  L  I  R  W  I  L  R  R  L  Y  H  *  M  L  *  *  M  D  M  H  G  M  D  I  T  M  K  L  L  S  S  F  R  K  C  W  M  K  D  S  N  Q  R  M  *  L  L  *  A  L  Y  M  R  V  L  K  Q  G  I  L  S  L  D  N  M  F  T  N  W  S  T  N  *  V  L  V  L  M  L  Q  L  L  T  R  *  F  Q  C  I  A  S  A  K  E  W  I  L  Q  L  N  C  L  K  T  *  K  E  K  H  L  F  H  G  M  L  *  F  W  A  M  H  K  M  D  V  *  W  M  H  *  L  I  F  V  K  C  I  C  R  T  S  H  L  I  H  L  Q  W  *  V  L  L  L  L  L  L  S  Y  Q  Y  Y  A  K  L  S  G  Y  M  D  L  L  *  E  L  V  *  T  G  M  F  L  *  P  L  H  L  L  T  C  M  Q  N  V  E  Q  F  T  Q  Q  E  S  Y  L  T  *  W  M  I  G  M  L  Q  H  G  M  P  *  *  M  D  M  A  H  M  A  L  E  R  K  L  L  N  Y  L  R  K  *  E  R  G  M  *  S  L  T  T  *  H  F  S  V  S  S  Q  L  A  A  T  L  A  L  *  T  R  G  A  T  I  S  R  S  *  G  K  N  T  T  W  S  L  Q  W  T  I  M  G  Q  W  L  T  *  L  V  E  L  V  G  *  V  R  L  G  T  S  L  I  I  C  L  P  D  Q  D  S  M  S  M  V  Q  C  W  E  L  A  R  F  T  K  M  *  I  W  G  R  R  Q  Q  T  N  Y  L  S  *  I  P  M  M  V  D  I  M  C  F  L  L  I  C  T  P  G  L  Q  Y  G  I  K  L  L  M  S  E  L  *  W  R  E  K  V  F  K  R  H  L  D  G  V  *  L  I  *  E  T  R  S  T  H  S  T  Q  E  A  L  A  I  L  S  Q  R  R  S  M  L  T  L  R  N  C  L  I  G  L  K  L  L  D  I  Y  L  I  L  I  Q  F  T  M  W  K  M  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97778" stop="96429"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCGSVGTARLVFDKMDSKTAVSLNAMIDGYARNGYHDEALIIFQKMLDEGFKPTNVTIMSTLHACAETRNIELGQYVHKLVNQLGLGSNVAVVNSLISMYCKCQRVDIAAELFENLKGKTLVSWNALILGYAQNGCVMDALTHFCEMHLQNITPDSFTMVSVVTALAELSVLRQAKWIHGFAVRTCLNGNVFVATALVDMYAKCGAVHTARKLFDMMDDRHVTTWNAMIDGYGTHGFGKEAVELFEEMRKGHVEPNDITFLCVISACSHSGFVDKGRNYFTIMREEYNLEPSMDHYGAMVDLIGRAGRLSEAWNFIDNMPTRPGLNVYGAMLGACKIHKNVDLGEKAADKLFELDPDDGGYHVLLANMYARASIWHKVANVRTMMERKGIQKTPGWSLVDLRNEVHTFYSGSTSHPQSEKIYAYLEKLFDRIKAAGYIPDTDSIHDVEDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="100523" PGL_stop="99420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100523" e_stop="100421"/>
            <exon e_start="100045" e_stop="99983"/>
            <exon e_start="99754" e_stop="99420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.915" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100523" e_stop="100421" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.915" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100045" e_stop="99983" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99754" e_stop="99420" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100523" stop="100421"/>
              <exon start="100045" stop="99983"/>
              <exon start="99754" stop="99420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA : GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAG : GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATAC</gDNA_template>
            <first_frame> K  E  A  L  L  F  I  C  W  W  C  F  Y  N  I  S  W  S  I  Y  G  L  S  P  H  K  N  E  K  Q  V  Q  Y  Q   : R  *  *  F  F  G  *  L  H  L  P  F  D  L  S  V  L  H  L  I  S   : G  S  *  N  I  R  D  E  Q  C  P  R  W  H  L  A  W  *  R  *  Y  H  M  R  R  K  L  F  *  T  W  Q  D  P  I  *  T  K  S  A  C  C  C  V  N  K  V  L  N  H  E  L  Y  R  G  L  R  T  Q  K  G  M  T  I  R  G  *  Q  L  I  L  E  *  S  I  L  H  I  V  L  Y  L  E  K  P  S  L  Q  A  R  S  *  I  S  N  I  L  F  P  E  Q  K  N  L  I  R  L  A  H  S  *  Y </first_frame>
            <second_frame>  K  K  H  C  F  L  Y  V  G  G  A  F  I  I  L  V  G  V  Y  M  G  Y  H  R  T  K  M  R  N  K  F  N  I  R  :  G  D  S  S  L  D  D  C  I  F  H  L  T  C  P  C  C  T  L  S  Q  :  E  A  R  T  L  E  M  N  N  V  Q  D  G  I  W  H  G  R  G  D  T  I  C  V  G  S  Y  S  E  P  G  R  T  P  F  E  L  S  P  P  A  V  V  S  T  K  S  *  T  M  N  S  T  E  G  L  G  H  K  K  E  *  Q  Y  G  V  S  S  *  F  *  S  R  A  S  F  T  L  F  S  T  L  K  S  Q  A  Y  K  R  G  P  E  L  A  T  F  F  F  Q  N  R  R  I  S  L  D  L  P  I  H  D   </second_frame>
            <third_frame>   R  S  T  A  F  Y  M  L  V  V  L  L  *  Y  *  L  E  Y  I  W  V  I  T  A  Q  K  *  E  T  S  S  I  S  E :   V  I  V  L  W  M  I  A  S  S  I  *  P  V  R  A  A  P  Y  L  R :   K  L  E  H  *  R  *  T  M  S  K  M  A  F  G  M  V  E  V  I  P  Y  A  *  E  V  I  L  N  L  A  G  P  H  L  N  *  V  R  L  L  L  C  Q  Q  S  P  E  P  *  T  L  Q  R  A  *  D  T  K  R  N  D  N  T  G  L  A  V  N  S  R  V  E  H  P  S  H  C  S  L  P  *  K  A  K  P  T  S  A  V  L  N  *  Q  H  S  F  S  R  T  E  E  S  H  *  T  C  P  F  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100522" stop="100421"/>
                    <exon start="100045" stop="99983"/>
                    <exon start="99754" stop="99611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKHCFLYVGGAFIILVGVYMGYHRTKMRNKFNIRGDSSLDDCIFHLTCPCCTLSQEARTLEMNNVQDGIWHGRGDTICVGSYSEPGRTPFELSPPAVVSTKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="102174" PGL_stop="101726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102174" e_stop="101726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102174" e_stop="101726" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102174" stop="101726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCCACCATATCCTCCTCTAAAAATAAAAATAAAAATAGACTATAATTATGTTCCACAATATCCCTTATTTACCAAATTAACTCTTTATATATAAACTCTGTCTCAATCTCAACTATTTTAATCATATATCTCTATATCTCTTCCGTTCTGCTCGGCACAAATATTTCCGCTTAATCCATACTCTGTTCGTTTGTATAAACTTTTTGATAATTTTTGGAAGAGTGCAGCCAGATAATGGATGTGTTTGAAAAGAGAGAAATGGCGGCGGAGAAAGCAAGAGGAAGGGAGGAGGAGGAAGAGGGAGAGGGGCAGAGGTTGTTGTCGGAAGGGGTGACTGTGGTGGATTTTGATTTGTTGTGTTCCACGGTGGCGATGCAGGCACAAAAGGGGCAGTGGGTGAAGTTAAATTTGAATGGGGATGAAGAAAATGCTATGGGTTATGATTATG</gDNA_template>
            <first_frame> S  H  H  I  L  L  *  K  *  K  *  K  *  T  I  I  M  F  H  N  I  P  Y  L  P  N  *  L  F  I  Y  K  L  C  L  N  L  N  Y  F  N  H  I  S  L  Y  L  F  R  S  A  R  H  K  Y  F  R  L  I  H  T  L  F  V  C  I  N  F  L  I  I  F  G  R  V  Q  P  D  N  G  C  V  *  K  E  R  N  G  G  G  E  S  K  R  K  G  G  G  G  R  G  R  G  A  E  V  V  V  G  R  G  D  C  G  G  F  *  F  V  V  F  H  G  G  D  A  G  T  K  G  A  V  G  E  V  K  F  E  W  G  *  R  K  C  Y  G  L  *  L   </first_frame>
            <second_frame>  A  T  I  S  S  S  K  N  K  N  K  N  R  L  *  L  C  S  T  I  S  L  I  Y  Q  I  N  S  L  Y  I  N  S  V  S  I  S  T  I  L  I  I  Y  L  Y  I  S  S  V  L  L  G  T  N  I  S  A  *  S  I  L  C  S  F  V  *  T  F  *  *  F  L  E  E  C  S  Q  I  M  D  V  F  E  K  R  E  M  A  A  E  K  A  R  G  R  E  E  E  E  E  G  E  G  Q  R  L  L  S  E  G  V  T  V  V  D  F  D  L  L  C  S  T  V  A  M  Q  A  Q  K  G  Q  W  V  K  L  N  L  N  G  D  E  E  N  A  M  G  Y  D  Y  </second_frame>
            <third_frame>   P  P  Y  P  P  L  K  I  K  I  K  I  D  Y  N  Y  V  P  Q  Y  P  L  F  T  K  L  T  L  Y  I  *  T  L  S  Q  S  Q  L  F  *  S  Y  I  S  I  S  L  P  F  C  S  A  Q  I  F  P  L  N  P  Y  S  V  R  L  Y  K  L  F  D  N  F  W  K  S  A  A  R  *  W  M  C  L  K  R  E  K  W  R  R  R  K  Q  E  E  G  R  R  R  K  R  E  R  G  R  G  C  C  R  K  G  *  L  W  W  I  L  I  C  C  V  P  R  W  R  C  R  H  K  R  G  S  G  *  S  *  I  *  M  G  M  K  K  M  L  W  V  M  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101963" stop="101727"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLEECSQIMDVFEKREMAAEKARGREEEEEGEGQRLLSEGVTVVDFDLLCSTVAMQAQKGQWVKLNLNGDEENAMGYDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="108654" PGL_stop="105935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108654" e_stop="108323"/>
            <exon e_start="106811" e_stop="105935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108654" e_stop="108323" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.977">
            <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106811" e_stop="105935" e_length="877"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108654" stop="108323"/>
              <exon start="106811" stop="106337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108649" stop="108323"/>
              <exon start="106811" stop="106483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108648" stop="108323"/>
              <exon start="106811" stop="106521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108647" stop="108323"/>
              <exon start="106811" stop="106426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108644" stop="108323"/>
              <exon start="106811" stop="106634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108640" stop="108323"/>
              <exon start="106811" stop="105935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108640" stop="108323"/>
              <exon start="106811" stop="106496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108639" stop="108323"/>
              <exon start="106811" stop="106552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108639" stop="108323"/>
              <exon start="106811" stop="106703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108635" stop="108323"/>
              <exon start="106811" stop="106366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108582" stop="108323"/>
              <exon start="106811" stop="106207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108571" stop="108323"/>
              <exon start="106811" stop="106271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108571" stop="108323"/>
              <exon start="106811" stop="106354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108570" stop="108323"/>
              <exon start="106811" stop="106581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108564" stop="108323"/>
              <exon start="106811" stop="106694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108562" stop="108323"/>
              <exon start="106811" stop="106326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108562" stop="108323"/>
              <exon start="106811" stop="106711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108462" stop="108323"/>
              <exon start="106811" stop="106426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106679" stop="106172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106649" stop="105947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106649" stop="105947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGGATAATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG : AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTCAA</gDNA_template>
            <first_frame> D  W  I  I  H  F  I  G  F  F  F  F  P  K  F  I  K  F  V  F  Q  I  H  V  I  A  L  G  F  *  K  M  P  Q  R  H  S  K  N  N  N  D  L  A  F  F  T  Y  D  E  K  R  K  L  G  Y  G  T  Q  K  E  R  L  G  K  D  S  I  K  P  F  D  A  C  S  L  C  L  K  P  F  I  D  P  L  C  C  Q  K  G  H  V  F  C  K  E  C  I  L  E  C  L  L  S  Q  K  K  D  I  Q  R :   K  L  A  A  H  T  G  Q  Q  K  Q  E  K  E  E  E  E  E  R  L  M  L  Q  K  A  R  D  L  D  A  F  D  Q  Q  N  H  G  P  V  P  Q  Y  N  D  K  N  Y  N  R  D  K  N  G  F  H  G  A  N  S  V  K  A  T  S  Y  E  E  E  A  L  R  T  M  K  A  F  W  L  P  S  A  T  P  D  A  P  A  K  V  E  A  P  S  T  S  T  T  C  P  E  G  R  E  K  I  K  M  K  N  L  F  P  I  H  F  T  E  D  T  S  A  Q  K  K  H  K  S  L  D  K  S  F  I  C  P  S  C  K  V  T  L  T  N  T  L  S  L  V  A  L  N  T  C  G  H  V  F  C  K  K  C  A  E  K  F  V  A  V  D  K  V  C  V  V  C  D  K  P  C  K  N  R  N  L  V  N  V  E  K  G  G  T  G  F  A  A  H  G  D  N  L  E  A  K  D  F  K  H  L  G  S  G  S  G  L  G  L  V  R  P  A  M  K  T  *  L  A  V  Y  Q  F  A  Y  *  R  *  W  G  F  V  W  C  V  V  I  W  Y  I  I  F  Y  P  E  N  *  V  F  S  C  I  V  F  I  *  L  Q  L  R  E  S  N  L  Y  P  F  Q  F  T  S  N  I  S  F  Y  N  C  L  K  L  V  P  Q </first_frame>
            <second_frame>  I  G  *  S  T  S  *  G  F  S  S  S  P  N  S  *  N  S  S  S  K  F  M  *  L  H  *  G  F  E  R  C  R  R  D  T  R  R  T  T  T  I  L  P  S  L  R  T  M  R  R  E  S  *  G  M  E  H  K  R  R  G  W  E  K  I  Q  S  S  H  S  M  L  V  P  F  V  *  N  P  S  S  I  R  C  V  A  R  K  G  M  S  F  A  K  N  A  F  *  N  A  F  C  P  R  K  R  I  S  K   : E  S  *  L  L  I  Q  V  S  R  S  K  K  K  K  R  K  R  R  G  *  C  C  R  K  P  G  I  L  M  H  L  I  N  K  I  M  V  Q  F  R  S  T  M  I  R  T  T  T  E  T  K  M  D  S  M  E  L  T  V  *  K  L  L  L  M  R  R  K  H  L  E  P  *  K  H  F  G  C  P  L  Q  H  Q  M  H  L  L  R  W  K  P  H  P  L  A  Q  L  V  L  K  G  G  K  K  L  R  *  K  T  F  S  L  Y  T  S  L  K  I  Q  V  H  R  R  N  T  S  L  L  T  R  V  S  Y  V  P  V  A  R  S  H  *  P  I  L  C  H  L  *  H  L  I  L  V  D  M  S  S  A  R  N  V  Q  K  N  L  W  L  L  T  R  F  A  W  S  V  T  N  H  V  K  I  E  I  W  *  M  W  K  R  E  E  Q  G  L  L  P  M  E  I  I  L  K  Q  K  T  S  N  T  W  G  V  E  V  V  W  A  W  *  G  L  P  *  R  R  N  L  L  Y  T  S  L  L  I  R  D  S  G  A  L  Y  G  V  L  *  Y  G  I  S  S  S  T  L  K  T  E  Y  F  L  V  S  S  L  F  N  C  S  S  A  K  A  T  Y  I  L  S  N  S  L  V  I  F  H  S  I  I  V  *  N  L  F  L   </second_frame>
            <third_frame>   L  D  N  P  L  H  R  V  F  L  L  P  Q  I  H  K  I  R  L  P  N  S  C  D  C  I  R  V  L  K  D  A  A  E  T  L  E  E  Q  Q  R  S  C  L  L  Y  V  R  *  E  E  K  V  R  V  W  N  T  K  G  E  A  G  K  R  F  N  Q  A  I  R  C  L  F  P  L  F  K  T  L  H  R  S  V  V  L  P  E  R  A  C  L  L  Q  R  M  H  S  R  M  P  F  V  P  E  K  G  Y  P  K  :  K  V  S  C  S  Y  R  S  A  E  A  R  K  R  R  G  R  G  E  V  D  A  A  E  S  Q  G  S  *  C  I  *  S  T  K  S  W  S  S  S  A  V  Q  *  *  E  L  Q  Q  R  Q  K  W  I  P  W  S  *  Q  C  E  S  Y  F  L  *  G  G  S  T  *  N  H  E  S  I  L  A  A  L  C  N  T  R  C  T  C  *  G  G  S  P  I  H  *  H  N  L  S  *  R  E  G  K  N  *  D  E  K  P  F  P  Y  T  L  H  *  R  Y  K  C  T  E  E  T  Q  V  S  *  Q  E  F  H  M  S  Q  L  Q  G  H  T  N  Q  Y  F  V  T  C  S  T  *  Y  L  W  T  C  L  L  Q  E  M  C  R  K  I  C  G  C  *  Q  G  L  R  G  L  *  Q  T  M  *  K  *  K  S  G  E  C  G  K  G  R  N  R  V  C  C  P  W  R  *  S  *  S  K  R  L  Q  T  L  G  E  W  K  W  F  G  P  G  E  A  C  H  E  D  V  T  C  C  I  P  V  C  L  L  E  I  V  G  L  C  M  V  C  C  N  M  V  Y  H  L  L  P  *  K  L  S  I  F  L  Y  R  L  Y  L  T  A  A  P  R  K  Q  L  I  S  F  P  I  H  *  *  Y  F  I  L  *  L  F  E  T  C  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108564" stop="108323"/>
                    <exon start="106811" stop="106136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPFIDPLCCQKGHVFCKECILECLLSQKKDIQRKLAAHTGQQKQEKEEEEERLMLQKARDLDAFDQQNHGPVPQYNDKNYNRDKNGFHGANSVKATSYEEEALRTMKAFWLPSATPDAPAKVEAPSTSTTCPEGREKIKMKNLFPIHFTEDTSAQKKHKSLDKSFICPSCKVTLTNTLSLVALNTCGHVFCKKCAEKFVAVDKVCVVCDKPCKNRNLVNVEKGGTGFAAHGDNLEAKDFKHLGSGSGLGLVRPAMKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109962" PGL_stop="110764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109962" e_stop="110764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="109962" e_stop="110764" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109962" stop="110565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109967" stop="110504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109969" stop="110450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109972" stop="110451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109974" stop="110764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACCTCTCTTCTTCCCCAAAGGTCCCAAGAACTCAAACAATACACAATCGAATCGGATTCGAACATCACAAAACACACAATATCTCTCTGAATTCTTCAATACCAATTCCGTATTTATCTATTTACACCAGCATGACATCACCCAAAAAGCCACCACCAGAATCCGACCGCCCACTCACGGCGATCATGCACCAACCGGCATCTCCTCGTTTCCATTTAGGAACTCCGAATTCCGGTGCTAATCGGAAGGTTGCTATCGCCGTCGATCTTAGCGACGAAAGTGCTTATGCCGTCAAATGGGCTGTGCAAAATTATCTCCGACCAGGTGACGCCGTTATACTCCTTCACGTCCGTCCAACTTCGGTACTTTATGGAGCTGATTGGGGTGCTATTGATGTTTCTGTTGACACTGCAAATGAAGAATCACAGCGGAAACTGGAAGATGATTTTGATAACTTCACAACTACGAAATCGAATGATTTAGCTCAGCCACTTGTGGAGGCTAATATTCCATTCAAGATTCATATTGTGAAGGATCATGATATGAAGGAAAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTGAGTGCTGTTATAATGGGGAGTAGAGGGTTTGGTGCATCAAGGCGTAGCCCGAAAGGAGGGATGCTTGGTAGTGTGAGTGATTATTGTGTGCATCATTGTGTTTGCCCCGTTGTTGTTGTTAGATATCCTGATGATAAAGATGCTACTACTGGCAATGACTCGGTCACAGATGTGCTTCACCCTGTACCTGAGGAGGAGCCTATATACCATGATGCCT</gDNA_template>
            <first_frame> *  P  L  F  F  P  K  G  P  K  N  S  N  N  T  Q  S  N  R  I  R  T  S  Q  N  T  Q  Y  L  S  E  F  F  N  T  N  S  V  F  I  Y  L  H  Q  H  D  I  T  Q  K  A  T  T  R  I  R  P  P  T  H  G  D  H  A  P  T  G  I  S  S  F  P  F  R  N  S  E  F  R  C  *  S  E  G  C  Y  R  R  R  S  *  R  R  K  C  L  C  R  Q  M  G  C  A  K  L  S  P  T  R  *  R  R  Y  T  P  S  R  P  S  N  F  G  T  L  W  S  *  L  G  C  Y  *  C  F  C  *  H  C  K  *  R  I  T  A  E  T  G  R  *  F  *  *  L  H  N  Y  E  I  E  *  F  S  S  A  T  C  G  G  *  Y  S  I  Q  D  S  Y  C  E  G  S  *  Y  E  G  K  V  V  F  G  S  *  E  V  G  F  E  C  C  Y  N  G  E  *  R  V  W  C  I  K  A  *  P  E  R  R  D  A  W  *  C  E  *  L  L  C  A  S  L  C  L  P  R  C  C  C  *  I  S  *  *  *  R  C  Y  Y  W  Q  *  L  G  H  R  C  A  S  P  C  T  *  G  G  A  Y  I  P  *  C   </first_frame>
            <second_frame>  N  L  S  S  S  P  K  V  P  R  T  Q  T  I  H  N  R  I  G  F  E  H  H  K  T  H  N  I  S  L  N  S  S  I  P  I  P  Y  L  S  I  Y  T  S  M  T  S  P  K  K  P  P  P  E  S  D  R  P  L  T  A  I  M  H  Q  P  A  S  P  R  F  H  L  G  T  P  N  S  G  A  N  R  K  V  A  I  A  V  D  L  S  D  E  S  A  Y  A  V  K  W  A  V  Q  N  Y  L  R  P  G  D  A  V  I  L  L  H  V  R  P  T  S  V  L  Y  G  A  D  W  G  A  I  D  V  S  V  D  T  A  N  E  E  S  Q  R  K  L  E  D  D  F  D  N  F  T  T  T  K  S  N  D  L  A  Q  P  L  V  E  A  N  I  P  F  K  I  H  I  V  K  D  H  D  M  K  E  R  L  C  L  E  V  E  R  L  G  L  S  A  V  I  M  G  S  R  G  F  G  A  S  R  R  S  P  K  G  G  M  L  G  S  V  S  D  Y  C  V  H  H  C  V  C  P  V  V  V  V  R  Y  P  D  D  K  D  A  T  T  G  N  D  S  V  T  D  V  L  H  P  V  P  E  E  E  P  I  Y  H  D  A  </second_frame>
            <third_frame>   T  S  L  L  P  Q  R  S  Q  E  L  K  Q  Y  T  I  E  S  D  S  N  I  T  K  H  T  I  S  L  *  I  L  Q  Y  Q  F  R  I  Y  L  F  T  P  A  *  H  H  P  K  S  H  H  Q  N  P  T  A  H  S  R  R  S  C  T  N  R  H  L  L  V  S  I  *  E  L  R  I  P  V  L  I  G  R  L  L  S  P  S  I  L  A  T  K  V  L  M  P  S  N  G  L  C  K  I  I  S  D  Q  V  T  P  L  Y  S  F  T  S  V  Q  L  R  Y  F  M  E  L  I  G  V  L  L  M  F  L  L  T  L  Q  M  K  N  H  S  G  N  W  K  M  I  L  I  T  S  Q  L  R  N  R  M  I  *  L  S  H  L  W  R  L  I  F  H  S  R  F  I  L  *  R  I  M  I  *  R  K  G  C  V  W  K  L  R  G  W  V  *  V  L  L  *  W  G  V  E  G  L  V  H  Q  G  V  A  R  K  E  G  C  L  V  V  *  V  I  I  V  C  I  I  V  F  A  P  L  L  L  L  D  I  L  M  I  K  M  L  L  L  A  M  T  R  S  Q  M  C  F  T  L  Y  L  R  R  S  L  Y  T  M  M  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109963" stop="110763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSSSPKVPRTQTIHNRIGFEHHKTHNISLNSSIPIPYLSIYTSMTSPKKPPPESDRPLTAIMHQPASPRFHLGTPNSGANRKVAIAVDLSDESAYAVKWAVQNYLRPGDAVILLHVRPTSVLYGADWGAIDVSVDTANEESQRKLEDDFDNFTTTKSNDLAQPLVEANIPFKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGASRRSPKGGMLGSVSDYCVHHCVCPVVVVRYPDDKDATTGNDSVTDVLHPVPEEEPIYHDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="113996" PGL_stop="113381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113996" e_stop="113857"/>
            <exon e_start="113749" e_stop="113381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113996" e_stop="113857" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113856" i_stop="113750" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113749" e_stop="113381" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113996" stop="113857"/>
              <exon start="113749" stop="113381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113871" stop="113857"/>
              <exon start="113749" stop="113381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113713" stop="113381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113704" stop="113381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG : GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</gDNA_template>
            <first_frame> V  Q  T  H  S  V  K  K  G  A  G  Q  N  S  G  A  T  K  N  G  K  T  E  N  Q  V  V  A  T  K  K  R  E  K  K  K  P  L  P  R  E  E  I  A  K  A  R :   E  E  K  R  K  A  L  R  E  A  T  R  K  A  T  M  K  N  K  *  G  L  V  I  S  R  R  Y  F  T  R  G  D  M  S  E  H  K  T  R  N  S  G  D  F  V  K  A  H  L  A  Y  Y  *  H  L  P  A  S  C  N  I  F  V  I  G  *  *  L  *  D  E  E  S  W  R  S  C  M  I  L  L  *  K  T  T  *  G  S  W  F  A  *  I  *  I  Q  K  F  C  P  I  L  L  T  Y  L  G  M  S  N  E  N  Y  K  G  K  R  V  V  C  I   </first_frame>
            <second_frame>  S  K  H  I  Q  L  R  K  V  L  D  K  T  A  V  Q  L  K  M  E  K  Q  K  T  K  W  W  Q  Q  K  R  G  K  R  R  N  P  F  L  E  R  K  L  Q  K  L   : G  R  R  R  G  K  H  L  G  K  L  H  E  K  P  R  *  R  T  N  E  V  W  *  *  A  E  D  I  L  P  E  V  T  *  A  N  I  K  Q  E  T  L  V  I  L  *  K  L  T  S  R  I  I  S  T  C  Q  L  V  V  I  F  L  L  L  V  D  D  F  E  M  K  R  A  G  G  R  V  *  F  C  F  R  K  Q  L  R  V  H  G  L  H  E  Y  E  S  K  N  F  V  L  Y  F  *  P  T  W  E  *  A  M  K  I  I  K  G  K  G  *  F  V  F  </second_frame>
            <third_frame>   P  N  T  F  S  *  E  R  C  W  T  K  Q  R  C  N  *  K  W  K  N  R  K  P  S  G  G  N  K  K  E  G  K  E  E  T  P  S  *  R  G  N  C  K  S  *  :  G  G  E  E  E  S  T  *  G  S  Y  T  K  S  H  D  E  E  Q  M  R  S  G  D  K  P  K  I  F  Y  Q  R  *  H  E  R  T  *  N  K  K  L  W  *  F  C  E  S  S  P  R  V  L  L  A  P  A  S  *  L  *  Y  F  C  Y  W  L  M  T  L  R  *  R  E  L  E  V  V  Y  D  F  A  L  E  N  N  L  G  F  M  V  C  M  N  M  N  P  K  I  L  S  Y  T  F  N  L  L  G  N  E  Q  *  K  L  *  R  E  K  G  S  L  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113996" stop="113857"/>
                    <exon start="113749" stop="113689"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTHSVKKGAGQNSGATKNGKTENQVVATKKREKKKPLPREEIAKAREEKRKALREATRKATMKNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 138 chains have been computed
$ 
$ memory statistics:
$ 273680 bytes spliced alignments in total
$ 82 spliced alignments have been stored
$ 3337 bytes was the average size of a spliced alignment
$ 28032 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1475 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 153 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:40:48
-->
