<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:29:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566222" ref_strand="+" ref_description="SGN-U566222 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|157352019|emb|CAO43009.1| (e_value=7e-74) unnamed; (*ATH) AT3G04930.1 (e_value=6e-60) | Symbol: None | expressed protein, contains Pfam profile: PF04504 protein of unknown function, DUF573 | chr3:1362920-1364805 FORWARD | Aliases: T9J14.12, T9J14_12; ">
      <seq>aacccagtcttacacgaaacctctccccgctcgtgactccctttactttcggcctaaccacccccttttacatcttaacctcgaaccctaatcgccacccccacccaaccctcacctcaccctaattacaccttcaagcttctcaaatggcttccgtagaagatcaggccgtcgtctacaacgatgatgatcttgacgatgaggaagatgatgaagagagcggtcatccccagaacgaagccgttgttgatgaagatgacgacgtagatgtcgatgaggaggaggaggaagaggacgattccacttcctctcctcccgtgcccgttgcgaaccattccgtcgccggagaggttactatagccgttgtcggtgtccctgcaactgattcactttgtattgaaccaaaacgagagcggatcaacgatttcggcgttactccggccacgatggttgtggaagaaaaaaagcccttagttttggatgattctcgcaagctttttcaacggctgtggatggatgaagatgagatcgaattgttacaaggatttctggaatacacaacccagcgcggtgggataaattcatcttcgcatcatcatcatgatacaggtgcgttctatgaccaaatcaagaacaagctgcagttggatttcaacaagaatcaattagtagagaagctgaggagattgaagaagaagtatcggacagtgatgagcaagatgggatctggtaaggaatttgtgtttaagagccctcacgatcaagccaccttcgagatctctcgcaagatctggagcaatgccggaccaattgtcgtccgtagcagtggtcccccaccaccaccaccagcagatgatggtggatttgatgatgaggattcacatctcaaccttaaccacgcaaatttcattgatcacacccctaacttcaatcttaatcctaacgggtttgatgttaaaacttctaagtcgaaaaaaaggcctcgaggaggagaagaaaaacccgggtatattcaacagtactatcatcagtcatctggtggaggaacaaatgtcattctccccccaactccggtctcgatggccgccccccaggccacagccacagctacagctgcagcttcaattcctagtttgatcgaggaaactgtgaggagctgtctatcacccattttcaaggaattgtttaacaatttgaatggatctagatattctgggttcggaatgtcattgggtccatcccctttagtaggatttgggaacagtttaatgagctgtgatatcaatatgaagacggatgagaaatggaggaagcaacagattctggaattggaagtttattcaaagagattagagcttgttcaagatcaaataaaggcacagttggaagaactcagatccatgaacagttagaccatggtttacccctttcttatactagtagaattttataataattcttgttgatggatgatattaccagattgcgaaaatagctaattgttctatttacataattgtgaaggctgtttagataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="2730" stop="595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="892" g_length="1539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1539" r_length="1539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-U566222" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U566222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCAGTCTTACACGAAACCTCTCCCCGCTCGTGACTCCCTTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATTT</genome_strand>
        <mrna_strand>AACCCAGTCTTACACGAAACCTCTCCCCGCTCGTGACTCCCTTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595460" ref_strand="+" ref_description="SGN-U595460 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>acttaaaaggagaaagaagaaaagggatgagcttatgtaattagtggaatcgtttacaatgtgagtttaatagaagctagcacatttgtacctcgttttgctctttcttttttcttatttaacaattaacaaccttatctactatactcaatgaaattttaattgtaattagaaactctataatttcaaaagtgaacctataaaaagtacaaaagccaccattagtggtggaaattgaataactcttgaaggttgattactagttgagcttcctaccgccaaactagctaaccaagatccatccgctagcatggtctgacccatcgcccctgaccctgattttgattttgattcaaagccaggtaatgattcgggatcggaccccgattcagaacctgactcaggtgtcgatccatccgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="+" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="3876" stop="4898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4176" g_stop="4598" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="+" ref_id="SGN-U595460" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4176" e_stop="4598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAAAAGGAGAAAGAAGAAAAGGGATGAGCTTATGTAATTAGTGGAATCGTTTACAATGTGAGTTTAATAGAAGCTAGCACATTTGTACCTCGTTTTGCTCTTTCTTTTTTCTTATTTAACAATTAACAACCTTATCTACTATACTCAATGAAATTTTAATTGTAATTAGAAACTCTATAATTTCAAAAGTGAACCTATAAAAAGTACAAAAGCCACCATTAGTGGTGTAAATTGAATAACTCTTGAAGGTTGATTACTAGTTGAGCTTCCTACCGCCAAACTAGCTAACCAAGATCCATCCGCTAGCATGGTCTGACCCATCGCCCCTGACCCTGATCCTGACCCTGATTCAGAGCCAGGTAATGATTCAGGATCTGACCCTGATTCAGAACCTGACTCAGGTGTCGATCCATCCGCTTT</genome_strand>
        <mrna_strand>ACTTAAAAGGAGAAAGAAGAAAAGGGATGAGCTTATGTAATTAGTGGAATCGTTTACAATGTGAGTTTAATAGAAGCTAGCACATTTGTACCTCGTTTTGCTCTTTCTTTTTTCTTATTTAACAATTAACAACCTTATCTACTATACTCAATGAAATTTTAATTGTAATTAGAAACTCTATAATTTCAAAAGTGAACCTATAAAAAGTACAAAAGCCACCATTAGTGGTGGAAATTGAATAACTCTTGAAGGTTGATTACTAGTTGAGCTTCCTACCGCCAAACTAGCTAACCAAGATCCATCCGCTAGCATGGTCTGACCCATCGCCCCTGACCCTGATTTTGATTTTGATTCAAAGCCAGGTAATGATTCGGGATCGGACCCCGATTCAGAACCTGACTCAGGTGTCGATCCATCCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584884" ref_strand="+" ref_description="SGN-U584884 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|118481123|gb|ABK92515.1| (e_value=7e-110) unknown; (*ATH) AT4G38660.1 (e_value=2e-100)  Symbol: None | thaumatin, putative, similar to thaumatin-like protein (Arabidopsis thaliana) GI:2435406, thaumatin-like protein precursor (Pyrus pyrifolia) GI:3241854; contains Pfam profile PF00314: Thaumatin family | chr4:18066171-18068095 REVERSE ... ; (*SWP) sp|P83332|TLP1_PRUPE (e_value=1e-69) Thaumatin-like protein 1 OS=Prunus persica; ">
      <seq>actcacacaccctccttaatttcccaattcttatatagtgagcgccaccagccccccttcaaatttcgtctaatttcttgggtggtcgatgtttcttgtttaatttcatctgcatttctttcttattactctacctttttccgattactacctacttatataccctaccaatcaagaatccattatcaccataaccattgcctctgctttctccactgtgattaagcttatttatcaacatttttgttcaaattaccaattgtgaaaatctctatggcaatttccacttctttgatgattctcagccttcttttgctcaccttctgtcaaggtatatttggggctacgtttacatttgtgaacaagtgtgaccatactgtgtggcctggaattctgggcagtccaaaactggatagcactggtttcgagctaaccaaagacacttctcgttcattccaagcgccgactggctggtctggccgtttctggggccgaacaggctgtaatttcgacgattcgggaaccggtacatgtgcaacagccgattgcggttccggacagatggagtgcaacggcggaggagctgcaactccggcgacactagcagagtttacactcggctcaggttcgcaggatttctatgacgtgagcctagtggacgggtacaatttgcctatgatggtggaggtgagtggcgggtcgggtccttgcgcatccacgggttgcaacgtcgacttgaaccaaaaatgcccgacggagctaagggcggacggtggtggcgcttgtaggagcgcgtgtgatgcttttaagactccacagtactgttgtgaaggcgcttatgcttcaccggcgacgtgctcgccgtcggtttactcgcagatgttcaagttagcgtgtccaaaatcttacagctatgcatatgacgatgcgacaagtacattcacatgttctaatgccaattacatcatcacattttgtccatcctctcaaaccagcaaaaaatcttcaaaagcggatggatcgacacctgagtcaggttctgaatcagggtcagatcctgaatcattacctggctctgaatcagggtcaggatcagggtcaggggcgatgggtcagaccatgctagcggatggatcttggttagctagtttggcggtaggaagctcaactagtaatcaaccttcaagagttattcaatttacaccactaatggtggcttttgtactttttataggttcacttttgaaattatagagtttctaattacaattaaaatttcattgagtatagtagataaggttgttaattgttaaataagaaaaaagaaagagcaaaacgaggtacaaatgtgctagcttctattaaactcacattgtaaacgattccactaattacataagctcatcccttttcttctttctccttttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="6298" stop="3876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5998" g_stop="5668" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5429" g_stop="4766" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="995" r_length="664" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4611" g_stop="4178" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1429" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-U584884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1429</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5998" e_stop="5668"/>
          <exon e_start="5429" e_stop="4766"/>
          <exon e_start="4611" e_stop="4178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAGGTAACCAACGAATGCTCTTTTTTTCTTCTTCTATTCAAATTGGGGTAGGAAAATTGAACTCTCTCGCTCACAACATGAAAGTTTAGATAACCAATCGATCAATTGAGCTACTAAGCTATCACAAACATTTCTAAATTTGCTTTCTTATTTATTGTTATGAATAGAAAAATTGTCAGTGATGATTACATTGGTTTTTAATTGTTTAATTTTGGTATTTTTCGCTTTTTTGCTTATGTAGGTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAGGTAAATGAAATCATAAAATCTATAAGTCAAAAGAGAAGTGTAAATGACTATTCATTAGTAAAATTTAAATTTATTTTGATGTACATTAGTATTATAAATCATTTTGGCCAAGTTTAATAAGCTTTTGATTAACATTTTTCTCCTTTTTGTGCAGCAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</genome_strand>
        <mrna_strand>ACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG..............................................................................................................................................................................................................................................GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG..........................................................................................................................................................CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597839" ref_strand="+" ref_description="SGN-U597839 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|15233437|ref|NP_195325.1| (e_value=4e-63) thaumatin family [Arabidopsis thaliana]; (*ATH) AT4G36010.2 (e_value=4e-65)  Symbol: None | similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:At2g17860.1); similar to putative thaumatin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAP52110.1); contains InterPro domain Thaumati... ; (*SWP) sp|P83332|TLP1_PRUPE (e_value=9e-42) Thaumatin-like protein 1 OS=Prunus persica; ">
      <seq>acaaaacaggggtgtcatcagcaacatttacattagtaaaccagtgcagttatacagtatggccggggatattatctggggctggaacatccccggtttctcctactggatttcagctgaatccaggacaggccattcccgtttctgttccggcgggttggtcaagtcgtttatggggtcggtctttttgctcccaagattcggcaacgggtaaattcacttgcgtaacaagtgattgcggctccggaacattagagtgcaccggcggagctgctccgccggcgactttagcggagttcacactcaacggagccgatgggcttgacttctacgacgttagtttagtggatggttataacttgcccatgttaataaccccacaaggtggaaccggttccggaaactgttctgcaactgggtgtgtggttgatctgaacgggccatgtccgtcggagctaaagcttgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="25142" stop="24074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24842" g_stop="24374" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-U597839" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24842" e_stop="24374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAGGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAGGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</genome_strand>
        <mrna_strand>ACAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAAGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAAGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569456" ref_strand="+" ref_description="SGN-U569456 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|147791391|emb|CAN59784.1| (e_value=5e-27) hypothetical; (*ATH) AT2G17870.1 (e_value=6e-27) | Symbol: None | cold-shock DNA-binding family protein, contains Pfam domains, PF00313: 'Cold-shock' DNA-binding domain and PF00098: Zinc knuckle | chr2:7771057-7772312 REVERSE | Aliases: T13L16.11, T13L16_11; (*SWP) sp|P27484|GRP2_NICSY (e_value=7e-18) Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2; ">
      <seq>tttaaaacggttttagacgcagaaaccgtatttagggttcccctagacttctctttaataaaaaaataaaatatctgtcatagaattagaacattctcaagggttttgcggagttccgatcaatagattggttaggaatggcggtggaggcatccagaatgacaggaacagtttctaagttcagtaacccaaagggttacggtttcatcaaacctgatgatggatccgaagatctgttcgttcatcaatcagagatcaaatctgatggctaccgttctctctacgaaggccagaaagtggagttcaccatgactgtgaagggagataagtaccaggctattgatgtcactgggcccgatggcgctcctctcgatagtggccgcaatggcaggggaaatagtaacagtcgtgggggtgggggttacggttatggtggtgatgatggtggttatcggaggaacggcaatgatggtgggtatcgtagcgccggtgagtgttataactgtggaaggacgggacatttggctagggactgtgatcgcaacagtggaggtggaggaggtggcagaggcgggtgttataactgtggtgctgctggacatttagctagggattgtgaccgtagtagtggtggtggtggtggaggaggaggagcaagtggtggtgtctgttacacttgcggtgggtatggccatatggctcgagattgcccgagtgctggacgtgttggcggccgtggtggaggaggtagtggggcttgttattcatgcggtgcacaaggacacttggctagagactgtcccggtggtggtggtagtaattttgggagatctgggggtggtagtggaggaagcaagtgttacaactgtggagaggcgggccactttgctagagaatgcactagccaatccgtgaactgatcatgtaaatgatctttctctttattccctacaccctcttagtactcattttcttagcagtgacatgtttttccagtttttctttgattagctatatgaccggttgtgctttcggagtagctctaccgagctgtttgaattcatgttcttgggatgcaaagttttagttaatgatttatatacaagtatataaaaaggctgaaggttcgattcttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="30509" stop="28772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30209" g_stop="29070" g_length="1140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1140" r_length="1140" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-U569456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1140</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30209" e_stop="29070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCACT</genome_strand>
        <mrna_strand>TTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579448" ref_strand="+" ref_description="SGN-U579448 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|73808626|gb|AAZ85313.1| (e_value=4e-49) putative ferredoxin NADP reductase [Solanum ochranthum]; (*ATH) AT5G66190.1 (e_value=8e-46)  Symbol: None | ferredoxin--NADP(+) reductase, putative / adrenodoxin reductase, putative, strong similarity to Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) from {Pisum sativum} SP:P10933, {Mesembryanthemum crystallinum} SP:P... ; (*SWP) sp|O04977|FENR1_TOBAC (e_value=5e-50) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic OS=Nicotiana tabacum GN=PETH; ">
      <seq>tttccgttcattcctgtggaaaatgttctttgagaaacacgaggattacaaggtacacaaaataaatatttctttgattgtttctcttcattcttaatttaattggctattcagcatatgctaggaaaagaagtaaaagaaaaaaattgcttggttaccgtcaaagccttctctagtctgaactaaagcaataagtataggccaatatgctgtctatttaagtgttctatctaatgagttcaagttacgcataaaagtaggagttttagatggatgacgcggtgaactataaagtgctatttgagtcaaggatgaatgtttattaaacatttaaaataaccaaacattggtttactcagaaatggttgtgggatttacattgagtatgtagttgttgtagtttattcaaaggttcagcagaatttcattgtagtgttatgtagcaattctttttttaacctccgatcattaatctgctgattgacatggatttggtgttatgtagttcaacggtacagcatggcttttcttgggtgttcccaccagcagctcactactttacaaggaggaattcgagaaaatgaaggagaaggccccagaaaacttcagattggactttgctgtgagcagagagcaaacgaacgaaaagggtgaaaagatgtacattcaaaccagaatggctcaatatgctgaagaactatggactttgctccaaaaagacaacaccttcatctacatgtgtggactcaagggcatggagcagggaattgatgaaattatgtcttcacttgcagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0056D15-6B56r/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0056D15.1" temp_strand="-" temp_description="C02HBa0056D15.1  AC215370.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0056D15 sequenced_by:kribb upload_account_name:korea">
        <position start="32457" stop="30941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32157" g_stop="31590" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31469" g_stop="31241" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="797" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0056D15.1" gen_strand="-" ref_id="SGN-U579448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0056D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U579448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32157" e_stop="31590"/>
          <exon e_start="31469" e_stop="31241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAGGTGATTTTCTAGCATATCGATAACTTTTTGATCTCCACAGTTTACTGAGCTGAATCGAAGTATTTCTATCAAAGTTGATCATATTTTGAAGTCTGGACTTATCATGTTGCTATGTTGTAGGAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAA</genome_strand>
        <mrna_strand>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG........................................................................................................................GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2430" PGL_stop="892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2430" e_stop="892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="2430" e_stop="892" e_length="1539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCAGTCTTACACGAAACCTCTCCCCGCTCGTGACTCCCTTTACTTTCGGCCTAACCACCCCCTTTTACATCTTAACCTCGAACCCTAATCGCCACCCCCACCCAACCCTCACCTCACCCTAATTACACCTTCAAGCTTCTCAAATGGCTTCCGTAGAAGATCAGGCCGTCGTCTACAACGATGATGATCTTGACGATGAGGAAGATGATGAAGAGAGCGGTCATCCCCAGAACGAAGCCGTTGTTGATGAAGATGACGACGTAGATGTCGATGAGGAGGAGGAGGAAGAGGACGATTCCACTTCCTCTCCTCCCGTGCCCGTTGCGAACCATTCCGTCGCCGGAGAGGTTACTATAGCCGTTGTCGGTGTCCCTGCAACTGATTCACTTTGTATTGAACCAAAACGAGAGCGGATCAACGATTTCGGCGTTACTCCGGCCACGATGGTTGTGGAAGAAAAAAAGCCCTTAGTTTTGGATGATTCTCGCAAGCTTTTTCAACGGCTGTGGATGGATGAAGATGAGATCGAATTGTTACAAGGATTTCTGGAATACACAACCCAGCGCGGTGGGATAAATTCATCTTCGCATCATCATCATGATACAGGTGCGTTCTATGACCAAATCAAGAACAAGCTGCAGTTGGATTTCAACAAGAATCAATTAGTAGAGAAGCTGAGGAGATTGAAGAAGAAGTATCGGACAGTGATGAGCAAGATGGGATCTGGTAAGGAATTTGTGTTTAAGAGCCCTCACGATCAAGCCACCTTCGAGATCTCTCGCAAGATCTGGAGCAATGCCGGACCAATTGTCGTCCGTAGCAGTGGTCCCCCACCACCACCACCAGCAGATGATGGTGGATTTGATGATGAGGATTCACATCTCAACCTTAACCACGCAAATTTCATTGATCACACCCCTAACTTCAATCTTAATCCTAACGGGTTTGATGTTAAAACTTCTAAGTCGAAAAAAAGGCCTCGAGGAGGAGAAGAAAAACCCGGGTATATTCAACAGTACTATCATCAGTCATCTGGTGGAGGAACAAATGTCATTCTCCCCCCAACTCCGGTCTCGATGGCCGCCCCCCAGGCCACAGCCACAGCTACAGCTGCAGCTTCAATTCCTAGTTTGATCGAGGAAACTGTGAGGAGCTGTCTATCACCCATTTTCAAGGAATTGTTTAACAATTTGAATGGATCTAGATATTCTGGGTTCGGAATGTCATTGGGTCCATCCCCTTTAGTAGGATTTGGGAACAGTTTAATGAGCTGTGATATCAATATGAAGACGGATGAGAAATGGAGGAAGCAACAGATTCTGGAATTGGAAGTTTATTCAAAGAGATTAGAGCTTGTTCAAGATCAAATAAAGGCACAGTTGGAAGAACTCAGATCCATGAACAGTTAGACCATGGTTTACCCCTTTCTTATACTAGTAGAATTTTATAATAATTCTTGTTGATGGATGATATTACCAGATTGCGAAAATAGCTAATTGTTCTATTTACATAATTGTGAAGGCTGTTTAGATATTT</gDNA_template>
            <first_frame> N  P  V  L  H  E  T  S  P  R  S  *  L  P  L  L  S  A  *  P  P  P  F  T  S  *  P  R  T  L  I  A  T  P  T  Q  P  S  P  H  P  N  Y  T  F  K  L  L  K  W  L  P  *  K  I  R  P  S  S  T  T  M  M  I  L  T  M  R  K  M  M  K  R  A  V  I  P  R  T  K  P  L  L  M  K  M  T  T  *  M  S  M  R  R  R  R  K  R  T  I  P  L  P  L  L  P  C  P  L  R  T  I  P  S  P  E  R  L  L  *  P  L  S  V  S  L  Q  L  I  H  F  V  L  N  Q  N  E  S  G  S  T  I  S  A  L  L  R  P  R  W  L  W  K  K  K  S  P  *  F  W  M  I  L  A  S  F  F  N  G  C  G  W  M  K  M  R  S  N  C  Y  K  D  F  W  N  T  Q  P  S  A  V  G  *  I  H  L  R  I  I  I  M  I  Q  V  R  S  M  T  K  S  R  T  S  C  S  W  I  S  T  R  I  N  *  *  R  S  *  G  D  *  R  R  S  I  G  Q  *  *  A  R  W  D  L  V  R  N  L  C  L  R  A  L  T  I  K  P  P  S  R  S  L  A  R  S  G  A  M  P  D  Q  L  S  S  V  A  V  V  P  H  H  H  H  Q  Q  M  M  V  D  L  M  M  R  I  H  I  S  T  L  T  T  Q  I  S  L  I  T  P  L  T  S  I  L  I  L  T  G  L  M  L  K  L  L  S  R  K  K  G  L  E  E  E  K  K  N  P  G  I  F  N  S  T  I  I  S  H  L  V  E  E  Q  M  S  F  S  P  Q  L  R  S  R  W  P  P  P  R  P  Q  P  Q  L  Q  L  Q  L  Q  F  L  V  *  S  R  K  L  *  G  A  V  Y  H  P  F  S  R  N  C  L  T  I  *  M  D  L  D  I  L  G  S  E  C  H  W  V  H  P  L  *  *  D  L  G  T  V  *  *  A  V  I  S  I  *  R  R  M  R  N  G  G  S  N  R  F  W  N  W  K  F  I  Q  R  D  *  S  L  F  K  I  K  *  R  H  S  W  K  N  S  D  P  *  T  V  R  P  W  F  T  P  F  L  Y  *  *  N  F  I  I  I  L  V  D  G  *  Y  Y  Q  I  A  K  I  A  N  C  S  I  Y  I  I  V  K  A  V  *  I  F </first_frame>
            <second_frame>  T  Q  S  Y  T  K  P  L  P  A  R  D  S  L  Y  F  R  P  N  H  P  L  L  H  L  N  L  E  P  *  S  P  P  P  P  N  P  H  L  T  L  I  T  P  S  S  F  S  N  G  F  R  R  R  S  G  R  R  L  Q  R  *  *  S  *  R  *  G  R  *  *  R  E  R  S  S  P  E  R  S  R  C  *  *  R  *  R  R  R  C  R  *  G  G  G  G  R  G  R  F  H  F  L  S  S  R  A  R  C  E  P  F  R  R  R  R  G  Y  Y  S  R  C  R  C  P  C  N  *  F  T  L  Y  *  T  K  T  R  A  D  Q  R  F  R  R  Y  S  G  H  D  G  C  G  R  K  K  A  L  S  F  G  *  F  S  Q  A  F  S  T  A  V  D  G  *  R  *  D  R  I  V  T  R  I  S  G  I  H  N  P  A  R  W  D  K  F  I  F  A  S  S  S  *  Y  R  C  V  L  *  P  N  Q  E  Q  A  A  V  G  F  Q  Q  E  S  I  S  R  E  A  E  E  I  E  E  E  V  S  D  S  D  E  Q  D  G  I  W  *  G  I  C  V  *  E  P  S  R  S  S  H  L  R  D  L  S  Q  D  L  E  Q  C  R  T  N  C  R  P  *  Q  W  S  P  T  T  T  T  S  R  *  W  W  I  *  *  *  G  F  T  S  Q  P  *  P  R  K  F  H  *  S  H  P  *  L  Q  S  *  S  *  R  V  *  C  *  N  F  *  V  E  K  K  A  S  R  R  R  R  K  T  R  V  Y  S  T  V  L  S  S  V  I  W  W  R  N  K  C  H  S  P  P  N  S  G  L  D  G  R  P  P  G  H  S  H  S  Y  S  C  S  F  N  S  *  F  D  R  G  N  C  E  E  L  S  I  T  H  F  Q  G  I  V  *  Q  F  E  W  I  *  I  F  W  V  R  N  V  I  G  S  I  P  F  S  R  I  W  E  Q  F  N  E  L  *  Y  Q  Y  E  D  G  *  E  M  E  E  A  T  D  S  G  I  G  S  L  F  K  E  I  R  A  C  S  R  S  N  K  G  T  V  G  R  T  Q  I  H  E  Q  L  D  H  G  L  P  L  S  Y  T  S  R  I  L  *  *  F  L  L  M  D  D  I  T  R  L  R  K  *  L  I  V  L  F  T  *  L  *  R  L  F  R  Y   </second_frame>
            <third_frame>   P  S  L  T  R  N  L  S  P  L  V  T  P  F  T  F  G  L  T  T  P  F  Y  I  L  T  S  N  P  N  R  H  P  H  P  T  L  T  S  P  *  L  H  L  Q  A  S  Q  M  A  S  V  E  D  Q  A  V  V  Y  N  D  D  D  L  D  D  E  E  D  D  E  E  S  G  H  P  Q  N  E  A  V  V  D  E  D  D  D  V  D  V  D  E  E  E  E  E  E  D  D  S  T  S  S  P  P  V  P  V  A  N  H  S  V  A  G  E  V  T  I  A  V  V  G  V  P  A  T  D  S  L  C  I  E  P  K  R  E  R  I  N  D  F  G  V  T  P  A  T  M  V  V  E  E  K  K  P  L  V  L  D  D  S  R  K  L  F  Q  R  L  W  M  D  E  D  E  I  E  L  L  Q  G  F  L  E  Y  T  T  Q  R  G  G  I  N  S  S  S  H  H  H  H  D  T  G  A  F  Y  D  Q  I  K  N  K  L  Q  L  D  F  N  K  N  Q  L  V  E  K  L  R  R  L  K  K  K  Y  R  T  V  M  S  K  M  G  S  G  K  E  F  V  F  K  S  P  H  D  Q  A  T  F  E  I  S  R  K  I  W  S  N  A  G  P  I  V  V  R  S  S  G  P  P  P  P  P  P  A  D  D  G  G  F  D  D  E  D  S  H  L  N  L  N  H  A  N  F  I  D  H  T  P  N  F  N  L  N  P  N  G  F  D  V  K  T  S  K  S  K  K  R  P  R  G  G  E  E  K  P  G  Y  I  Q  Q  Y  Y  H  Q  S  S  G  G  G  T  N  V  I  L  P  P  T  P  V  S  M  A  A  P  Q  A  T  A  T  A  T  A  A  A  S  I  P  S  L  I  E  E  T  V  R  S  C  L  S  P  I  F  K  E  L  F  N  N  L  N  G  S  R  Y  S  G  F  G  M  S  L  G  P  S  P  L  V  G  F  G  N  S  L  M  S  C  D  I  N  M  K  T  D  E  K  W  R  K  Q  Q  I  L  E  L  E  V  Y  S  K  R  L  E  L  V  Q  D  Q  I  K  A  Q  L  E  E  L  R  S  M  N  S  *  T  M  V  Y  P  F  L  I  L  V  E  F  Y  N  N  S  C  *  W  M  I  L  P  D  C  E  N  S  *  L  F  Y  L  H  N  C  E  G  C  L  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2305" stop="1019"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLQASQMASVEDQAVVYNDDDLDDEEDDEESGHPQNEAVVDEDDDVDVDEEEEEEDDSTSSPPVPVANHSVAGEVTIAVVGVPATDSLCIEPKRERINDFGVTPATMVVEEKKPLVLDDSRKLFQRLWMDEDEIELLQGFLEYTTQRGGINSSSHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQATFEISRKIWSNAGPIVVRSSGPPPPPPADDGGFDDEDSHLNLNHANFIDHTPNFNLNPNGFDVKTSKSKKRPRGGEEKPGYIQQYYHQSSGGGTNVILPPTPVSMAAPQATATATAAASIPSLIEETVRSCLSPIFKELFNNLNGSRYSGFGMSLGPSPLVGFGNSLMSCDINMKTDEKWRKQQILELEVYSKRLELVQDQIKAQLEELRSMNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4176" PGL_stop="4598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4176" e_stop="4598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="4176" e_stop="4598" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4176" stop="4598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTAAAAGGAGAAAGAAGAAAAGGGATGAGCTTATGTAATTAGTGGAATCGTTTACAATGTGAGTTTAATAGAAGCTAGCACATTTGTACCTCGTTTTGCTCTTTCTTTTTTCTTATTTAACAATTAACAACCTTATCTACTATACTCAATGAAATTTTAATTGTAATTAGAAACTCTATAATTTCAAAAGTGAACCTATAAAAAGTACAAAAGCCACCATTAGTGGTGTAAATTGAATAACTCTTGAAGGTTGATTACTAGTTGAGCTTCCTACCGCCAAACTAGCTAACCAAGATCCATCCGCTAGCATGGTCTGACCCATCGCCCCTGACCCTGATCCTGACCCTGATTCAGAGCCAGGTAATGATTCAGGATCTGACCCTGATTCAGAACCTGACTCAGGTGTCGATCCATCCGCTTT</gDNA_template>
            <first_frame> T  *  K  E  K  E  E  K  G  *  A  Y  V  I  S  G  I  V  Y  N  V  S  L  I  E  A  S  T  F  V  P  R  F  A  L  S  F  F  L  F  N  N  *  Q  P  Y  L  L  Y  S  M  K  F  *  L  *  L  E  T  L  *  F  Q  K  *  T  Y  K  K  Y  K  S  H  H  *  W  C  K  L  N  N  S  *  R  L  I  T  S  *  A  S  Y  R  Q  T  S  *  P  R  S  I  R  *  H  G  L  T  H  R  P  *  P  *  S  *  P  *  F  R  A  R  *  *  F  R  I  *  P  *  F  R  T  *  L  R  C  R  S  I  R  F </first_frame>
            <second_frame>  L  K  R  R  K  K  K  R  D  E  L  M  *  L  V  E  S  F  T  M  *  V  *  *  K  L  A  H  L  Y  L  V  L  L  F  L  F  S  Y  L  T  I  N  N  L  I  Y  Y  T  Q  *  N  F  N  C  N  *  K  L  Y  N  F  K  S  E  P  I  K  S  T  K  A  T  I  S  G  V  N  *  I  T  L  E  G  *  L  L  V  E  L  P  T  A  K  L  A  N  Q  D  P  S  A  S  M  V  *  P  I  A  P  D  P  D  P  D  P  D  S  E  P  G  N  D  S  G  S  D  P  D  S  E  P  D  S  G  V  D  P  S  A   </second_frame>
            <third_frame>   L  K  G  E  R  R  K  G  M  S  L  C  N  *  W  N  R  L  Q  C  E  F  N  R  S  *  H  I  C  T  S  F  C  S  F  F  F  L  I  *  Q  L  T  T  L  S  T  I  L  N  E  I  L  I  V  I  R  N  S  I  I  S  K  V  N  L  *  K  V  Q  K  P  P  L  V  V  *  I  E  *  L  L  K  V  D  Y  *  L  S  F  L  P  P  N  *  L  T  K  I  H  P  L  A  W  S  D  P  S  P  L  T  L  I  L  T  L  I  Q  S  Q  V  M  I  Q  D  L  T  L  I  Q  N  L  T  Q  V  S  I  H  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0056D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5998" PGL_stop="4178"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5998" e_stop="5668"/>
            <exon e_start="5429" e_stop="4766"/>
            <exon e_start="4611" e_stop="4178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5998" e_stop="5668" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5667" i_stop="5430" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5429" e_stop="4766" e_length="664"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4765" i_stop="4612" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4611" e_stop="4178" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5998" stop="5668"/>
              <exon start="5429" stop="4766"/>
              <exon start="4611" stop="4178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCACACACCCTCCTTAATTTCCCAATTCTTATATAGTGAGCGCCACCAGCCCCCCTTCAAATTTCGTCTAATTTCTTGGGTGGTCGATGTTTCTTGTTTAATTTCATCTGCATTTCTTTCTTATTACTCTACCTTTTTCCGATTACTACCTACTTATATACCCTACCAATCAAGAATCCATTATCACCATAACCATTGCCTCTGCTTTCTCCACTGTGATTAAGCTTATTTATCAACATTTTTGTTCAAATTACCAATTGTGAAAATCTCTATGGCAATTTCCACTTCTTTGATGATTCTCAGCCTTCTTTTGCTCACCTTCTGTCAAG : GTATATTTGGGGCTACGTTTACATTTGTGAACAAGTGTGACCATACTGTGTGGCCTGGAATTCTGGGCAGTCCAAAACTGGATAGCACTGGTTTCGAGCTAACCAAAGACACTTCTCGTTCATTCCAAGCGCCGACTGGCTGGTCTGGCCGTTTCTGGGGCCGAACAGGCTGTAATTTCGACGATTCGGGAACCGGTACATGTGCAACAGCCGATTGCGGTTCCGGACAGATGGAGTGCAACGGCGGAGGAGCTGCAACTCCGGCGACACTAGCAGAGTTTACACTCGGCTCAGGTTCGCAGGATTTCTATGACGTGAGCCTAGTGGACGGGTACAATTTGCCTATGATGGTGGAGGTGAGTGGCGGGTCGGGTCCTTGCGCATCCACGGGTTGCAACGTCGACTTGAACCAAAAATGCCCGACGGAGCTAAGGGCGGACGGTGGTGGCGCTTGTAGGAGCGCGTGTGATGCTTTTAAGACTCCACAGTACTGTTGTGAAGGCGCTTATGCTTCACCGGCGACGTGCTCGCCGTCGGTTTACTCGCAGATGTTCAAGTTAGCGTGTCCAAAATCTTACAGCTATGCATATGACGATGCGACAAGTACATTCACATGTTCTAATGCCAATTACATCATCACATTTTGTCCATCCTCTCAAACCAG : CAAAAAATCTTCAAAAGCGGATGGATCGACACCTGAGTCAGGTTCTGAATCAGGGTCAGATCCTGAATCATTACCTGGCTCTGAATCAGGGTCAGGATCAGGGTCAGGGGCGATGGGTCAGACCATGCTAGCGGATGGATCTTGGTTAGCTAGTTTGGCGGTAGGAAGCTCAACTAGTAATCAACCTTCAAGAGTTATTCAATTTACACCACTAATGGTGGCTTTTGTACTTTTTATAGGTTCACTTTTGAAATTATAGAGTTTCTAATTACAATTAAAATTTCATTGAGTATAGTAGATAAGGTTGTTAATTGTTAAATAAGAAAAAAGAAAGAGCAAAACGAGGTACAAATGTGCTAGCTTCTATTAAACTCACATTGTAAACGATTCCACTAATTACATAAGCTCATCCCTTTTCTTCTTTCTCCTTTTAA</gDNA_template>
            <first_frame> T  H  T  P  S  L  I  S  Q  F  L  Y  S  E  R  H  Q  P  P  F  K  F  R  L  I  S  W  V  V  D  V  S  C  L  I  S  S  A  F  L  S  Y  Y  S  T  F  F  R  L  L  P  T  Y  I  P  Y  Q  S  R  I  H  Y  H  H  N  H  C  L  C  F  L  H  C  D  *  A  Y  L  S  T  F  L  F  K  L  P  I  V  K  I  S  M  A  I  S  T  S  L  M  I  L  S  L  L  L  L  T  F  C  Q   : G  I  F  G  A  T  F  T  F  V  N  K  C  D  H  T  V  W  P  G  I  L  G  S  P  K  L  D  S  T  G  F  E  L  T  K  D  T  S  R  S  F  Q  A  P  T  G  W  S  G  R  F  W  G  R  T  G  C  N  F  D  D  S  G  T  G  T  C  A  T  A  D  C  G  S  G  Q  M  E  C  N  G  G  G  A  A  T  P  A  T  L  A  E  F  T  L  G  S  G  S  Q  D  F  Y  D  V  S  L  V  D  G  Y  N  L  P  M  M  V  E  V  S  G  G  S  G  P  C  A  S  T  G  C  N  V  D  L  N  Q  K  C  P  T  E  L  R  A  D  G  G  G  A  C  R  S  A  C  D  A  F  K  T  P  Q  Y  C  C  E  G  A  Y  A  S  P  A  T  C  S  P  S  V  Y  S  Q  M  F  K  L  A  C  P  K  S  Y  S  Y  A  Y  D  D  A  T  S  T  F  T  C  S  N  A  N  Y  I  I  T  F  C  P  S  S  Q  T  S :   K  K  S  S  K  A  D  G  S  T  P  E  S  G  S  E  S  G  S  D  P  E  S  L  P  G  S  E  S  G  S  G  S  G  S  G  A  M  G  Q  T  M  L  A  D  G  S  W  L  A  S  L  A  V  G  S  S  T  S  N  Q  P  S  R  V  I  Q  F  T  P  L  M  V  A  F  V  L  F  I  G  S  L  L  K  L  *  S  F  *  L  Q  L  K  F  H  *  V  *  *  I  R  L  L  I  V  K  *  E  K  R  K  S  K  T  R  Y  K  C  A  S  F  Y  *  T  H  I  V  N  D  S  T  N  Y  I  S  S  S  L  F  F  F  L  L  L  </first_frame>
            <second_frame>  L  T  H  P  P  *  F  P  N  S  Y  I  V  S  A  T  S  P  P  S  N  F  V  *  F  L  G  W  S  M  F  L  V  *  F  H  L  H  F  F  L  I  T  L  P  F  S  D  Y  Y  L  L  I  Y  P  T  N  Q  E  S  I  I  T  I  T  I  A  S  A  F  S  T  V  I  K  L  I  Y  Q  H  F  C  S  N  Y  Q  L  *  K  S  L  W  Q  F  P  L  L  *  *  F  S  A  F  F  C  S  P  S  V  K  :  V  Y  L  G  L  R  L  H  L  *  T  S  V  T  I  L  C  G  L  E  F  W  A  V  Q  N  W  I  A  L  V  S  S  *  P  K  T  L  L  V  H  S  K  R  R  L  A  G  L  A  V  S  G  A  E  Q  A  V  I  S  T  I  R  E  P  V  H  V  Q  Q  P  I  A  V  P  D  R  W  S  A  T  A  E  E  L  Q  L  R  R  H  *  Q  S  L  H  S  A  Q  V  R  R  I  S  M  T  *  A  *  W  T  G  T  I  C  L  *  W  W  R  *  V  A  G  R  V  L  A  H  P  R  V  A  T  S  T  *  T  K  N  A  R  R  S  *  G  R  T  V  V  A  L  V  G  A  R  V  M  L  L  R  L  H  S  T  V  V  K  A  L  M  L  H  R  R  R  A  R  R  R  F  T  R  R  C  S  S  *  R  V  Q  N  L  T  A  M  H  M  T  M  R  Q  V  H  S  H  V  L  M  P  I  T  S  S  H  F  V  H  P  L  K  P   : A  K  N  L  Q  K  R  M  D  R  H  L  S  Q  V  L  N  Q  G  Q  I  L  N  H  Y  L  A  L  N  Q  G  Q  D  Q  G  Q  G  R  W  V  R  P  C  *  R  M  D  L  G  *  L  V  W  R  *  E  A  Q  L  V  I  N  L  Q  E  L  F  N  L  H  H  *  W  W  L  L  Y  F  L  *  V  H  F  *  N  Y  R  V  S  N  Y  N  *  N  F  I  E  Y  S  R  *  G  C  *  L  L  N  K  K  K  E  R  A  K  R  G  T  N  V  L  A  S  I  K  L  T  L  *  T  I  P  L  I  T  *  A  H  P  F  S  S  F  S  F  * </second_frame>
            <third_frame>   S  H  T  L  L  N  F  P  I  L  I  *  *  A  P  P  A  P  L  Q  I  S  S  N  F  L  G  G  R  C  F  L  F  N  F  I  C  I  S  F  L  L  L  Y  L  F  P  I  T  T  Y  L  Y  T  L  P  I  K  N  P  L  S  P  *  P  L  P  L  L  S  P  L  *  L  S  L  F  I  N  I  F  V  Q  I  T  N  C  E  N  L  Y  G  N  F  H  F  F  D  D  S  Q  P  S  F  A  H  L  L  S  R :   Y  I  W  G  Y  V  Y  I  C  E  Q  V  *  P  Y  C  V  A  W  N  S  G  Q  S  K  T  G  *  H  W  F  R  A  N  Q  R  H  F  S  F  I  P  S  A  D  W  L  V  W  P  F  L  G  P  N  R  L  *  F  R  R  F  G  N  R  Y  M  C  N  S  R  L  R  F  R  T  D  G  V  Q  R  R  R  S  C  N  S  G  D  T  S  R  V  Y  T  R  L  R  F  A  G  F  L  *  R  E  P  S  G  R  V  Q  F  A  Y  D  G  G  G  E  W  R  V  G  S  L  R  I  H  G  L  Q  R  R  L  E  P  K  M  P  D  G  A  K  G  G  R  W  W  R  L  *  E  R  V  *  C  F  *  D  S  T  V  L  L  *  R  R  L  C  F  T  G  D  V  L  A  V  G  L  L  A  D  V  Q  V  S  V  S  K  I  L  Q  L  C  I  *  R  C  D  K  Y  I  H  M  F  *  C  Q  L  H  H  H  I  L  S  I  L  S  N  Q  :  Q  K  I  F  K  S  G  W  I  D  T  *  V  R  F  *  I  R  V  R  S  *  I  I  T  W  L  *  I  R  V  R  I  R  V  R  G  D  G  S  D  H  A  S  G  W  I  L  V  S  *  F  G  G  R  K  L  N  *  *  S  T  F  K  S  Y  S  I  Y  T  T  N  G  G  F  C  T  F  Y  R  F  T  F  E  I  I  E  F  L  I  T  I  K  I  S  L  S  I  V  D  K  V  V  N  C  *  I  R  K  K  K  E  Q  N  E  V  Q  M  C  *  L  L  L  N  S  H  C  K  R  F  H  *  L  H  K  L  I  P  F  L  L  S  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5773" stop="5668"/>
                    <exon start="5429" stop="4766"/>
                    <exon start="4611" stop="4353"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLSTFLFKLPIVKISMAISTSLMILSLLLLTFCQGIFGATFTFVNKCDHTVWPGILGSPKLDSTGFELTKDTSRSFQAPTGWSGRFWGRTGCNFDDSGTGTCATADCGSGQMECNGGGAATPATLAEFTLGSGSQDFYDVSLVDGYNLPMMVEVSGGSGPCASTGCNVDLNQKCPTELRADGGGACRSACDAFKTPQYCCEGAYASPATCSPSVYSQMFKLACPKSYSYAYDDATSTFTCSNANYIITFCPSSQTSKKSSKADGSTPESGSESGSDPESLPGSESGSGSGSGAMGQTMLADGSWLASLAVGSSTSNQPSRVIQFTPLMVAFVLFIGSLLKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5998" stop="5774"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THTPSLISQFLYSERHQPPFKFRLISWVVDVSCLISSAFLSYYSTFFRLLPTYIPYQSRIHYHHNHCLCFLHCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24842" PGL_stop="24374"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24842" e_stop="24374"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="24842" e_stop="24374" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24842" stop="24374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAACAGGGGTGTCATCAGCAACATTTACATTAGTAAACCAGTGCAGTTATACAGTATGGCCGGGGATATTATCTGGGGCTGGAACATCCCCGGTTTCTCCTACTGGATTTCAGCTGAATCCAGGACAGGCCATTCCCGTTTCTGTTCCGGCGGGTTGGTCAGGTCGTTTATGGGGTCGGTCTTTTTGCTCCCAAGATTCGGCAACGGGTAAATTCACTTGCGTAACAGGTGATTGCGGCTCCGGAACATTAGAGTGCACCGGCGGAGCTGCTCCGCCGGCGACTTTAGCGGAGTTCACACTCAACGGAGCCGATGGGCTTGACTTCTACGACGTTAGTTTAGTGGATGGTTATAACTTGCCCATGTTAATAACCCCACAAGGTGGAACCGGTTCCGGAAACTGTTCTGCAACTGGGTGTGTGGTTGATCTGAACGGGCCATGTCCGTCGGAGCTAAAGCTTGTGAG</gDNA_template>
            <first_frame> T  K  Q  G  C  H  Q  Q  H  L  H  *  *  T  S  A  V  I  Q  Y  G  R  G  Y  Y  L  G  L  E  H  P  R  F  L  L  L  D  F  S  *  I  Q  D  R  P  F  P  F  L  F  R  R  V  G  Q  V  V  Y  G  V  G  L  F  A  P  K  I  R  Q  R  V  N  S  L  A  *  Q  V  I  A  A  P  E  H  *  S  A  P  A  E  L  L  R  R  R  L  *  R  S  S  H  S  T  E  P  M  G  L  T  S  T  T  L  V  *  W  M  V  I  T  C  P  C  *  *  P  H  K  V  E  P  V  P  E  T  V  L  Q  L  G  V  W  L  I  *  T  G  H  V  R  R  S  *  S  L  *  </first_frame>
            <second_frame>  Q  N  R  G  V  I  S  N  I  Y  I  S  K  P  V  Q  L  Y  S  M  A  G  D  I  I  W  G  W  N  I  P  G  F  S  Y  W  I  S  A  E  S  R  T  G  H  S  R  F  C  S  G  G  L  V  R  S  F  M  G  S  V  F  L  L  P  R  F  G  N  G  *  I  H  L  R  N  R  *  L  R  L  R  N  I  R  V  H  R  R  S  C  S  A  G  D  F  S  G  V  H  T  Q  R  S  R  W  A  *  L  L  R  R  *  F  S  G  W  L  *  L  A  H  V  N  N  P  T  R  W  N  R  F  R  K  L  F  C  N  W  V  C  G  *  S  E  R  A  M  S  V  G  A  K  A  C  E </second_frame>
            <third_frame>   K  T  G  V  S  S  A  T  F  T  L  V  N  Q  C  S  Y  T  V  W  P  G  I  L  S  G  A  G  T  S  P  V  S  P  T  G  F  Q  L  N  P  G  Q  A  I  P  V  S  V  P  A  G  W  S  G  R  L  W  G  R  S  F  C  S  Q  D  S  A  T  G  K  F  T  C  V  T  G  D  C  G  S  G  T  L  E  C  T  G  G  A  A  P  P  A  T  L  A  E  F  T  L  N  G  A  D  G  L  D  F  Y  D  V  S  L  V  D  G  Y  N  L  P  M  L  I  T  P  Q  G  G  T  G  S  G  N  C  S  A  T  G  C  V  V  D  L  N  G  P  C  P  S  E  L  K  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24840" stop="24376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTGVSSATFTLVNQCSYTVWPGILSGAGTSPVSPTGFQLNPGQAIPVSVPAGWSGRLWGRSFCSQDSATGKFTCVTGDCGSGTLECTGGAAPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLITPQGGTGSGNCSATGCVVDLNGPCPSELKLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30209" PGL_stop="29070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30209" e_stop="29070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30209" e_stop="29070" e_length="1140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30209" stop="29070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAAACGGTTTTAGACGCAGAAACCGTATTTAGGGTTCCCCTAGACTTCTCTTTAATAAAAAAATAAAATATCTGTCATAGAATTAGAACATTCTCAAGGGTTTTGCGGAGTTCCGATCAATAGATTGGTTAGGAATGGCGGTGGAGGCATCCAGAATGACAGGAACAGTTTCTAAGTTCAGTAACCCAAAGGGTTACGGTTTCATCAAACCTGATGATGGATCCGAAGATCTGTTCGTTCATCAATCAGAGATCAAATCTGATGGCTACCGTTCTCTCTACGAAGGCCAGAAAGTGGAGTTCACCATGACTGTGAAGGGAGATAAGTACCAGGCTATTGATGTCACTGGGCCCGATGGCGCTCCTCTCGATAGTGGCCGCAATGGCAGGGGAAATAGTAACAGTCGTGGGGGTGGGGGTTACGGTTATGGTGGTGATGATGGTGGTTATCGGAGGAACGGCAATGATGGTGGGTATCGTAGCGCCGGTGAGTGTTATAACTGTGGAAGGACGGGACATTTGGCTAGGGACTGTGATCGCAACAGTGGAGGTGGAGGAGGTGGCAGAGGCGGGTGTTATAACTGTGGTGCTGCTGGACATTTAGCTAGGGATTGTGACCGTAGTAGTGGTGGTGGTGGTGGAGGAGGAGGAGCAAGTGGTGGTGTCTGTTACACTTGCGGTGGGTATGGCCATATGGCTCGAGATTGCCCGAGTGCTGGACGTGTTGGCGGCCGTGGTGGAGGAGGTAGTGGGGCTTGTTATTCATGCGGTGCACAAGGACACTTGGCTAGAGACTGTCCCGGTGGTGGTGGTAGTAATTTTGGGAGATCTGGGGGTGGTAGTGGAGGAAGCAAGTGTTACAACTGTGGAGAGGCGGGCCACTTTGCTAGAGAATGCACTAGCCAATCCGTGAACTGATCATGTAAATGATCTTTCTCTTTATTCCCTACACCCTCTTAGTACTCATTTTCTTAGCAGTGACATGTTTTTCCAGTTTTTCTTTGATTAGCTATATGACCGGTTGTGCTTTCGGAGTAGCTCTACCGAGCTGTTTGAATTCATGTTCTTGGGATGCAAAGTTTTAGTTAATGATTTATATACAAGTATATAAAAAGGCTGAAGGTTCGATTCTTGCACT</gDNA_template>
            <first_frame> F  K  T  V  L  D  A  E  T  V  F  R  V  P  L  D  F  S  L  I  K  K  *  N  I  C  H  R  I  R  T  F  S  R  V  L  R  S  S  D  Q  *  I  G  *  E  W  R  W  R  H  P  E  *  Q  E  Q  F  L  S  S  V  T  Q  R  V  T  V  S  S  N  L  M  M  D  P  K  I  C  S  F  I  N  Q  R  S  N  L  M  A  T  V  L  S  T  K  A  R  K  W  S  S  P  *  L  *  R  E  I  S  T  R  L  L  M  S  L  G  P  M  A  L  L  S  I  V  A  A  M  A  G  E  I  V  T  V  V  G  V  G  V  T  V  M  V  V  M  M  V  V  I  G  G  T  A  M  M  V  G  I  V  A  P  V  S  V  I  T  V  E  G  R  D  I  W  L  G  T  V  I  A  T  V  E  V  E  E  V  A  E  A  G  V  I  T  V  V  L  L  D  I  *  L  G  I  V  T  V  V  V  V  V  V  V  E  E  E  E  Q  V  V  V  S  V  T  L  A  V  G  M  A  I  W  L  E  I  A  R  V  L  D  V  L  A  A  V  V  E  E  V  V  G  L  V  I  H  A  V  H  K  D  T  W  L  E  T  V  P  V  V  V  V  V  I  L  G  D  L  G  V  V  V  E  E  A  S  V  T  T  V  E  R  R  A  T  L  L  E  N  A  L  A  N  P  *  T  D  H  V  N  D  L  S  L  Y  S  L  H  P  L  S  T  H  F  L  S  S  D  M  F  F  Q  F  F  F  D  *  L  Y  D  R  L  C  F  R  S  S  S  T  E  L  F  E  F  M  F  L  G  C  K  V  L  V  N  D  L  Y  T  S  I  *  K  G  *  R  F  D  S  C  T </first_frame>
            <second_frame>  L  K  R  F  *  T  Q  K  P  Y  L  G  F  P  *  T  S  L  *  *  K  N  K  I  S  V  I  E  L  E  H  S  Q  G  F  C  G  V  P  I  N  R  L  V  R  N  G  G  G  G  I  Q  N  D  R  N  S  F  *  V  Q  *  P  K  G  L  R  F  H  Q  T  *  *  W  I  R  R  S  V  R  S  S  I  R  D  Q  I  *  W  L  P  F  S  L  R  R  P  E  S  G  V  H  H  D  C  E  G  R  *  V  P  G  Y  *  C  H  W  A  R  W  R  S  S  R  *  W  P  Q  W  Q  G  K  *  *  Q  S  W  G  W  G  L  R  L  W  W  *  *  W  W  L  S  E  E  R  Q  *  W  W  V  S  *  R  R  *  V  L  *  L  W  K  D  G  T  F  G  *  G  L  *  S  Q  Q  W  R  W  R  R  W  Q  R  R  V  L  *  L  W  C  C  W  T  F  S  *  G  L  *  P  *  *  W  W  W  W  W  R  R  R  S  K  W  W  C  L  L  H  L  R  W  V  W  P  Y  G  S  R  L  P  E  C  W  T  C  W  R  P  W  W  R  R  *  W  G  L  L  F  M  R  C  T  R  T  L  G  *  R  L  S  R  W  W  W  *  *  F  W  E  I  W  G  W  *  W  R  K  Q  V  L  Q  L  W  R  G  G  P  L  C  *  R  M  H  *  P  I  R  E  L  I  M  *  M  I  F  L  F  I  P  Y  T  L  L  V  L  I  F  L  A  V  T  C  F  S  S  F  S  L  I  S  Y  M  T  G  C  A  F  G  V  A  L  P  S  C  L  N  S  C  S  W  D  A  K  F  *  L  M  I  Y  I  Q  V  Y  K  K  A  E  G  S  I  L  A   </second_frame>
            <third_frame>   *  N  G  F  R  R  R  N  R  I  *  G  S  P  R  L  L  F  N  K  K  I  K  Y  L  S  *  N  *  N  I  L  K  G  F  A  E  F  R  S  I  D  W  L  G  M  A  V  E  A  S  R  M  T  G  T  V  S  K  F  S  N  P  K  G  Y  G  F  I  K  P  D  D  G  S  E  D  L  F  V  H  Q  S  E  I  K  S  D  G  Y  R  S  L  Y  E  G  Q  K  V  E  F  T  M  T  V  K  G  D  K  Y  Q  A  I  D  V  T  G  P  D  G  A  P  L  D  S  G  R  N  G  R  G  N  S  N  S  R  G  G  G  G  Y  G  Y  G  G  D  D  G  G  Y  R  R  N  G  N  D  G  G  Y  R  S  A  G  E  C  Y  N  C  G  R  T  G  H  L  A  R  D  C  D  R  N  S  G  G  G  G  G  G  R  G  G  C  Y  N  C  G  A  A  G  H  L  A  R  D  C  D  R  S  S  G  G  G  G  G  G  G  G  A  S  G  G  V  C  Y  T  C  G  G  Y  G  H  M  A  R  D  C  P  S  A  G  R  V  G  G  R  G  G  G  G  S  G  A  C  Y  S  C  G  A  Q  G  H  L  A  R  D  C  P  G  G  G  G  S  N  F  G  R  S  G  G  G  S  G  G  S  K  C  Y  N  C  G  E  A  G  H  F  A  R  E  C  T  S  Q  S  V  N  *  S  C  K  *  S  F  S  L  F  P  T  P  S  *  Y  S  F  S  *  Q  *  H  V  F  P  V  F  L  *  L  A  I  *  P  V  V  L  S  E  *  L  Y  R  A  V  *  I  H  V  L  G  M  Q  S  F  S  *  *  F  I  Y  K  Y  I  K  R  L  K  V  R  F  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30120" stop="29290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NILKGFAEFRSIDWLGMAVEASRMTGTVSKFSNPKGYGFIKPDDGSEDLFVHQSEIKSDGYRSLYEGQKVEFTMTVKGDKYQAIDVTGPDGAPLDSGRNGRGNSNSRGGGGYGYGGDDGGYRRNGNDGGYRSAGECYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAGHLARDCDRSSGGGGGGGGASGGVCYTCGGYGHMARDCPSAGRVGGRGGGGSGACYSCGAQGHLARDCPGGGGSNFGRSGGGSGGSKCYNCGEAGHFARECTSQSVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32157" PGL_stop="31241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32157" e_stop="31590"/>
            <exon e_start="31469" e_stop="31241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32157" e_stop="31590" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31589" i_stop="31470" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31469" e_stop="31241" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32157" stop="31590"/>
              <exon start="31469" stop="31241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCGTTCATTCCTGTGGAAAATGTTCTTTGAGAAACACGAGGATTACAAGGTACACAAAATAAATATTTCTTTGATTGTTTCTCTTCATTCTTAATTTAATTGGCTATTCAGCATATGCTAGGAAAAGAAGTAAAAGAAAAAAATTGCTTGGTTACCGTCAAAGCCTTCTCTAGTCTGAACTAAAGCAATAAGTATAGGCCAATATGCTGTCTATTTAAGTGTTCTATCTAATGAGTTCAAGTTACGCATAAAAGTAGGAGTTTTAGATGGATGACGCGGTGAACTATAAAGTGCTATTTGAGTCAAGGATGAATGTTTATTAAACATTTAAAATAACCAAACATTGGTTTACTCAGAAATGGTTGTGGGATTTACATTGAGTATGTAGTTGTTGTAGTTTATTCAAAGGTTCAGCAGAATTTCATTGTAGTGTTATGTAGCAATTCTTTTTTTAACCTCCGATCATTAATCTGCTGATTGACATGGATTTGGTGTTATGTAGTTCAACGGTACAGCATGGCTTTTCTTGGGTGTTCCCACCAGCAGCTCACTACTTTACAAGGAG : GAATTCGAGAAAATGAAGGAGAAGGCCCCAGAAAACTTCAGATTGGACTTTGCTGTGAGCAGAGAGCAAACGAACGAAAAGGGTGAAAAGATGTACATTCAAACCAGAATGGCTCAATATGCTGAAGAACTATGGACTTTGCTCCAAAAAGACAACACCTTCATCTACATGTGTGGACTCAAGGGCATGGAGCAGGGAATTGATGAAATTATGTCTTCACTTGCAGAAA</gDNA_template>
            <first_frame> F  P  F  I  P  V  E  N  V  L  *  E  T  R  G  L  Q  G  T  Q  N  K  Y  F  F  D  C  F  S  S  F  L  I  *  L  A  I  Q  H  M  L  G  K  E  V  K  E  K  N  C  L  V  T  V  K  A  F  S  S  L  N  *  S  N  K  Y  R  P  I  C  C  L  F  K  C  S  I  *  *  V  Q  V  T  H  K  S  R  S  F  R  W  M  T  R  *  T  I  K  C  Y  L  S  Q  G  *  M  F  I  K  H  L  K  *  P  N  I  G  L  L  R  N  G  C  G  I  Y  I  E  Y  V  V  V  V  V  Y  S  K  V  Q  Q  N  F  I  V  V  L  C  S  N  S  F  F  N  L  R  S  L  I  C  *  L  T  W  I  W  C  Y  V  V  Q  R  Y  S  M  A  F  L  G  C  S  H  Q  Q  L  T  T  L  Q  G   : G  I  R  E  N  E  G  E  G  P  R  K  L  Q  I  G  L  C  C  E  Q  R  A  N  E  R  K  G  *  K  D  V  H  S  N  Q  N  G  S  I  C  *  R  T  M  D  F  A  P  K  R  Q  H  L  H  L  H  V  W  T  Q  G  H  G  A  G  N  *  *  N  Y  V  F  T  C  R   </first_frame>
            <second_frame>  F  R  S  F  L  W  K  M  F  F  E  K  H  E  D  Y  K  V  H  K  I  N  I  S  L  I  V  S  L  H  S  *  F  N  W  L  F  S  I  C  *  E  K  K  *  K  K  K  I  A  W  L  P  S  K  P  S  L  V  *  T  K  A  I  S  I  G  Q  Y  A  V  Y  L  S  V  L  S  N  E  F  K  L  R  I  K  V  G  V  L  D  G  *  R  G  E  L  *  S  A  I  *  V  K  D  E  C  L  L  N  I  *  N  N  Q  T  L  V  Y  S  E  M  V  V  G  F  T  L  S  M  *  L  L  *  F  I  Q  R  F  S  R  I  S  L  *  C  Y  V  A  I  L  F  L  T  S  D  H  *  S  A  D  *  H  G  F  G  V  M  *  F  N  G  T  A  W  L  F  L  G  V  P  T  S  S  S  L  L  Y  K  E  :  E  F  E  K  M  K  E  K  A  P  E  N  F  R  L  D  F  A  V  S  R  E  Q  T  N  E  K  G  E  K  M  Y  I  Q  T  R  M  A  Q  Y  A  E  E  L  W  T  L  L  Q  K  D  N  T  F  I  Y  M  C  G  L  K  G  M  E  Q  G  I  D  E  I  M  S  S  L  A  E  </second_frame>
            <third_frame>   S  V  H  S  C  G  K  C  S  L  R  N  T  R  I  T  R  Y  T  K  *  I  F  L  *  L  F  L  F  I  L  N  L  I  G  Y  S  A  Y  A  R  K  R  S  K  R  K  K  L  L  G  Y  R  Q  S  L  L  *  S  E  L  K  Q  *  V  *  A  N  M  L  S  I  *  V  F  Y  L  M  S  S  S  Y  A  *  K  *  E  F  *  M  D  D  A  V  N  Y  K  V  L  F  E  S  R  M  N  V  Y  *  T  F  K  I  T  K  H  W  F  T  Q  K  W  L  W  D  L  H  *  V  C  S  C  C  S  L  F  K  G  S  A  E  F  H  C  S  V  M  *  Q  F  F  F  *  P  P  I  I  N  L  L  I  D  M  D  L  V  L  C  S  S  T  V  Q  H  G  F  S  W  V  F  P  P  A  A  H  Y  F  T  R  R :   N  S  R  K  *  R  R  R  P  Q  K  T  S  D  W  T  L  L  *  A  E  S  K  R  T  K  R  V  K  R  C  T  F  K  P  E  W  L  N  M  L  K  N  Y  G  L  C  S  K  K  T  T  P  S  S  T  C  V  D  S  R  A  W  S  R  E  L  M  K  L  C  L  H  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0056D15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31652" stop="31590"/>
                    <exon start="31469" stop="31242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNGTAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLQKDNTFIYMCGLKGMEQGIDEIMSSLAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 12208 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2034 bytes was the average size of a spliced alignment
$ 11504 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1917 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 21 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:29:33
-->
